Citrus Sinensis ID: 048211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-----
Protein Sequence
MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKLPQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEccccccEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcEEEcccccccccccccccccccccccEEEEEEccHHHHccccccccEEEEEEccEEEEEEcccccccccEEEccccccccccHHHHHHHHcccccEEEEccccccccccccHHHHcccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccccccEEEEEEccccccEEEEEcccccccEEEEEccEEEEEcHHHccccHHHHHHHccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHccccccccccccccHHHHHHccccHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccEEEEEEEEcEHEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEccccHHccccHHHHHHHHHHHcEEEEccHHHccccccccHHHHcccccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPsyakawyrrgkvnvslenhddavHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKnnlrvsdeSVQVQLQCvttpdkgrgitsqydipegslvhseepyavtiskhcrethchyclnelpadaipctscsiplycsrrcrgqaggqvfkncpmernindsVFDNLEEYISQitldndfypedehifehkheckgvhwpvilpsdvVLAGRVLVKSVqkngvsmdvpnllgklelshnysqvspesklesHIYAIVLLYCLQhsygfelpingasVSQVVILISQIRVNSLAIVRMnsnnygqsdhvssgstctvEQVRVGLAIYTagslfnhsclpnihaYFLSRTLmirttefvpsgyplelsygpqvgqwdcKDRLkfledeysfrcqcsgcselntsdLVINAFccvdpncpgvvldnsilNCEKQkrkhlpavpqcsssaphlqvgklsSDYIGLVAYLLLEEnnrtsrygpgyclkcgsdrdlessyatVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIqlslddhnavDTISRLAAIFLHYFgshaetmfpHLLFLQREALKLPQ
Flexible Loop (DISEMBL)
mdandkdrnlVATLYvnrasvlqKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNresslagkkQIESELKIIldqsnrtsnkVVQHTknnlrvsdesvqVQLQCvttpdkgrgitSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGgqvfkncpmeRNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSvqkngvsmdvPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNygqsdhvssgsTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKLPQ
Low Complexity Region (SEG)
MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKLPQ
Disordered region (IsUnstruct)
*********LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI***********************************************QVQLQCVTTP**GRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNY*******KLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEK*****************HLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQR*******
Disordered Region (DISOPRED)
********NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT*************************************************VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL**
Disordered Region (DISEMBL)
MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYG**********CTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQ****************HLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKLPQ
Disordered Region (DISPRO)
****DKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNR****VVQ*****LRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKLP*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKLPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	665	2.2.26 [Sep-21-2011]
Q9CWR2	428	Histone-lysine N-methyltr	yes	no	0.392	0.609	0.227	6e-11
Q8IYR2	804	SET and MYND domain-conta	yes	no	0.541	0.447	0.251	7e-11
Q5R5X9	804	SET and MYND domain-conta	yes	no	0.676	0.559	0.226	8e-11
Q9H7B4	428	Histone-lysine N-methyltr	no	no	0.392	0.609	0.224	1e-10
Q8BTK5	799	SET and MYND domain-conta	no	no	0.434	0.361	0.229	5e-09
Q5F3V0	742	SET and MYND domain-conta	no	no	0.590	0.529	0.222	6e-09
Q5RGL7	434	N-lysine methyltransferas	no	no	0.374	0.573	0.233	8e-09
Q7XJS0	480	Histone-lysine N-methyltr	no	no	0.410	0.568	0.212	8e-09
Q9NRG4	433	N-lysine methyltransferas	no	no	0.378	0.581	0.229	1e-07
Q54Q80	1280	SET and MYND domain-conta	yes	no	0.144	0.075	0.333	1e-07

>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 127/330 (38%), Gaps = 69/330 (20%)

Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++++  TT ++G G+ +   +  G L+   +P A T+ K  R   C  CL       + C
Sbjct: 4   LKVEKFTTANRGNGLRAVAPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 62

Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
           + C I  YCS +C+ +A                                   +P+     
Sbjct: 63  SQCRIAKYCSAKCQKKA-----------------------------------WPD----- 82

Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
            H+ EC  +    P   P  V L GRV+VK + +     +   L    +L  N S+++ +
Sbjct: 83  -HRRECSCLKSCKPRYPPDSVRLLGRVIVKLMDEKPSESE--KLYSFYDLESNISKLTED 139

Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
            K      A+      QH    E+  + + +     L         A  ++  N++    
Sbjct: 140 KKEGLRQLAMTF----QHFMREEIQ-DASQLPPSFDLFE-------AFAKVICNSF---- 183

Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
                + C  E   VG+ +Y + SL NHSC PN    F    L++R    + +G  L + 
Sbjct: 184 -----TICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTIC 238

Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
           Y   +     ++R K L D+Y F C C  C
Sbjct: 239 YLDML--MTSEERRKQLRDQYCFECDCIRC 266

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q8IYR2|SMYD4_HUMAN SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3

 Score = 69.7 bits (169), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 171/425 (40%), Gaps = 65/425 (15%)

Query: 108 KNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISK--------- 158
           + N ++S+ S  + L CV  P KGR + +  DI  G L+  E+ +   ++          
Sbjct: 223 EENEQLSNASSSIGL-CVD-PLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHG 280

Query: 159 -----HCRET----HCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKN-CPMER 208
                  R T    +CH CL    A  +PC  CS   YCS+ C  QA     +  CP+  
Sbjct: 281 LDSKWDTRVTNGDLYCHRCLKHTLA-TVPCDGCSYAKYCSQECLQQAWELYHRTECPLGG 339

Query: 209 NINDS-VFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILP--SDVVLAGRVL 265
            +    VF ++     ++TL   F  ED      K   K  +  + LP  ++ V      
Sbjct: 340 LLLTLGVFCHI---ALRLTLLVGF--EDVRKIITKLCDKISNKDICLPESNNQVKTLNYG 394

Query: 266 VKSVQKNGVSMDVP----NLLGKLELSHNYSQV----------SPESKLESHIYAIVLLY 311
           +   +KNG  ++ P    ++ GK E  +NY+ V          SPE K    +    L  
Sbjct: 395 LGESEKNGNIVETPIPGCDINGKYE--NNYNAVFNLLPHTENHSPEHKFLCALCVSALCR 452

Query: 312 CLQHSYGFELP----INGASVSQVVI--LISQIRVNSLAIVR------MNSNNYGQSDHV 359
            L+ +    +P    +N + +   V   L   + +  +A++R       N+       H 
Sbjct: 453 QLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHT 512

Query: 360 S-SGSTCT-VEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
              GS  T   QVR+   I+   SL NHSC PN    F+S    IR ++ +  G  +   
Sbjct: 513 GPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHC 572

Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC---SELNTSDLVINAFCCVDPNCPGVVLDN 474
           YGP   +    +R + L  +Y F C C  C   +    +     AFCC   +C   +  +
Sbjct: 573 YGPHKSRMGVAERQQKLRSQYFFDCACPACQTEAHRMAAGPRWEAFCC--NSCGAPMQGD 630

Query: 475 SILNC 479
            +L C
Sbjct: 631 DVLRC 635

Homo sapiens (taxid: 9606)

>sp|Q5R5X9|SMYD4_PONAB SET and MYND domain-containing protein 4 OS=Pongo abelii GN=SMYD4 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 127/561 (22%), Positives = 218/561 (38%), Gaps = 111/561 (19%)

Query: 4   NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRA-VQICPS--YAKAWYRRGKVNVSLE 60
           N +D +L    Y NR++ L        CL+D NRA     P     K   R+ +  V+L 
Sbjct: 101 NTEDMSLC---YANRSAALFHLGEYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALG 157

Query: 61  NHDDA---VHDL--------TIAKNRESSL-------AGKKQIESELKIILDQSNRTSNK 102
              +A   + DL        T+A  R  +L         K Q + +L      +   + +
Sbjct: 158 RLQEASQTISDLERNFTATPTLANVRPQTLQRNLHHLKMKVQEKDKLTETFPAALAKTLE 217

Query: 103 VVQHTKNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISK---- 158
                + N ++S  S  V L C+  P KGR + +  DI  G L+  E+ +   ++     
Sbjct: 218 DAALREENEQLSSASSSVGL-CID-PLKGRYLVATKDILPGELLVKEDAFVSVLNPGELP 275

Query: 159 ----------HCRET----HCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKN- 203
                       R T    +CH CL    A  +PC  CS   YCS+ C  QA     +  
Sbjct: 276 PPHHGLDSKWDTRVTNGDLYCHRCLKHTLA-TVPCDGCSYAKYCSQECLQQAWELYHRTE 334

Query: 204 CPMERNINDSV--------------FDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVH 249
           CP+   +                  F+++ + I+++   +    +D  + E  ++ K ++
Sbjct: 335 CPLGGLLLTLGVFCHIALRLTLLVGFEDVRKIITKVC--DKISNKDICLPESNNQVKTLN 392

Query: 250 WPVILPSDVVLAGRVLVKSVQKNGVSMDVP----NLLGKLELSHNYSQV----------S 295
           + +                 +K+G  ++ P    ++ GK E  +NY+ V          S
Sbjct: 393 YGL--------------GESEKSGNIIETPIPGCDINGKYE--NNYNAVFNLLPHTENHS 436

Query: 296 PESKLESHIYAIVLLYCLQHSYGFELP----INGASVSQVVI--LISQIRVNSLAIVR-- 347
           PE K    +    L   L+ +    +P    +N + +   V   L   + +  +A++R  
Sbjct: 437 PEHKFLCALCVSALCRQLEAASFQAIPTERSVNSSQLQAAVTPELCPDVTIWGVAMLRHM 496

Query: 348 ----MNSNNYGQSDHVSS-GSTCT-VEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLM 401
                N+       H  S GS  T   QVR+   I+   SL NHSC PN    F+S    
Sbjct: 497 LQLQCNAQAMTTIQHTGSKGSIVTDSRQVRLATGIFPVVSLLNHSCSPNTSMSFISTVAT 556

Query: 402 IRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGC---SELNTSDLVIN 458
           I+ ++ +  G  +   YGP   +    +R + L  +Y F C C  C   +    ++    
Sbjct: 557 IQASQRIRKGQEILHCYGPHKSRMGVAERQQELRSQYFFDCACPACQTEAHRMAAEPRWE 616

Query: 459 AFCCVDPNCPGVVLDNSILNC 479
           AFCC   +C   +  + +L+C
Sbjct: 617 AFCC--NSCGAPMQGDDVLHC 635

Pongo abelii (taxid: 9601)

>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 128/330 (38%), Gaps = 69/330 (20%)

Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++++   T  +G G+ +   +  G L+   +P A T+ K  R   C  CL       + C
Sbjct: 4   LKVEKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 62

Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
           + C +  YCS +C+ +A                                   +P+     
Sbjct: 63  SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 82

Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
            HK ECK +    P   P  V L GRV+ K +  +G   +   L    +L  N ++++ +
Sbjct: 83  -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 139

Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
            K    +  +V+ +  QH    E+  + + +     L         A  ++  N++    
Sbjct: 140 KK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 183

Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
                + C  E   VG+ +Y + SL NHSC PN    F    L++R    +  G  L + 
Sbjct: 184 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 238

Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
           Y   +     ++R K L D+Y F C C  C
Sbjct: 239 YLDML--MTSEERRKQLRDQYCFECDCFRC 266

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8BTK5|SMYD4_MOUSE SET and MYND domain-containing protein 4 OS=Mus musculus GN=Smyd4 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 141/335 (42%), Gaps = 46/335 (13%)

Query: 320 ELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTA 379
           +L + GA++ + ++   Q++ N+ AI  +   + G ++ + + S     Q+R+   I+  
Sbjct: 480 DLTVWGAAMLRHML---QLQCNAQAITSIC--HTGSNESIITNS----RQIRLATGIFPV 530

Query: 380 GSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYS 439
            SL NHSC PN    F      +R  + +  G  +   YGP   +    +R + L  +Y 
Sbjct: 531 VSLLNHSCRPNTSVSFTGTVATVRAAQRIAKGQEILHCYGPHESRMGVAERQQRLSSQYF 590

Query: 440 FRCQCSGCSELNTSDLVI---NAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSS 496
           F C+C  C              AFCC    C  ++  N +L+C  +          C++S
Sbjct: 591 FDCRCGACHAETLRAAAAPRWEAFCC--KTCRALMQGNDVLSCSNES---------CTNS 639

Query: 497 APHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGY--CLKCGSDRDLESSYATVDEAWIY 554
               Q+     D    V   + ++  RT +        L+C   R+   S+ + +     
Sbjct: 640 VSRDQLVSRLQDLQQQVC--MAQKLLRTGKPEQAIQQLLRC---REAAESFLSAEHT--V 692

Query: 555 IRRLQDAIISKEISRAVLLDASRFLG-LLRSILHAYNKSIAEILEKLYGHNHIVIGYELV 613
           +  ++D           L  A   LG  L+S  H   KS+ +++E  +G + + IG+EL 
Sbjct: 693 LGEIEDG----------LAQAHATLGNWLKSAAHV-QKSL-QVVETRHGPSSVEIGHELF 740

Query: 614 KLSSIQLS-LDDHNAVDTISRLAAIFLHYFGSHAE 647
           KL+ +  + L    A+  I +   I L + G  +E
Sbjct: 741 KLAQVLFNGLAVPEALSAIWKAERILLVHCGPESE 775

Mus musculus (taxid: 10090)

>sp|Q5F3V0|SMYD4_CHICK SET and MYND domain-containing protein 4 OS=Gallus gallus GN=SMYD4 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 109/489 (22%), Positives = 195/489 (39%), Gaps = 96/489 (19%)

Query: 11  VATLYVNRASVLQKRDHLVECLRDCNRAV------QICPSYAKAWYRRGKVNVSLENHDD 64
           VA  + NR++ L    H   CL D  RA       ++ P   K   R+ +  + L    D
Sbjct: 103 VALCFANRSAALFHLGHFEVCLEDIARAESHGYPDRLLP---KVLLRKAECLLRLGRLQD 159

Query: 65  AVHDLTIAKNRESSLAGKKQIESEL-KIILDQSNRTSNKVVQHT-KNNLRVSDESVQVQL 122
           A   LT  +N+   +A    + S + +++L + ++   ++ + +     R +D  VQ + 
Sbjct: 160 ATDTLTAVENK---MAVDGIMTSPIHRMLLKKLSQLKTEIHEGSCPEPAREADGDVQRES 216

Query: 123 QCVT----------------TPDKGRGITSQYDIPEGSLVHSEEPYAVTIS--------- 157
           +                   + ++GR + +  DI  G  +  E+ +   +          
Sbjct: 217 EIWEENGSISGASSSLSLNFSTERGRHLVASQDILPGQNLLKEKAFVSVLCPGEGDSLLL 276

Query: 158 KHCRET-----------HCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKN-CP 205
           +   ET           +CH+CL +L A +IPC  CS   YCS+ C   A  Q  +  CP
Sbjct: 277 QDSSETVWDTRVTNADLYCHHCLKQLLA-SIPCCGCSYAKYCSQNCADVAWEQYHRTECP 335

Query: 206 MERNI-NDSVFDN------LEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDV 258
           +   +    VF +      L    S+++   ++  +D +      E  G H     PS+ 
Sbjct: 336 LGALLLTLGVFFHVALRTVLLAGFSEVSRLVEWSRDDSNKDLCNAEAGGEH-----PSEA 390

Query: 259 V--LAGRVLVKSVQKNGVSMD----VPNLLGKLELSHNYSQVSPESKLESHIYAIVLLYC 312
           +   AGR ++     NG        V NLL  +E      + SPE K    +  + +   
Sbjct: 391 LDTRAGRKVIPGCNDNGQYQSSYQAVFNLLPHVE------KHSPEHKFLCMLSIVAICKK 444

Query: 313 LQHSYGFELPI-NGAS----------------VSQVVILISQIRVNSLAIVRMNSNNYGQ 355
           LQ + G E  + NG S                +S  ++++++  +  +  ++ N+     
Sbjct: 445 LQET-GLEAAVLNGESSTTGSEQKTCGKTSDELSPELMIMAEAMLRHVLQLQCNAQAITV 503

Query: 356 SDHVSSGSTCTVEQ--VRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
              + SG    V +  VR+  A +   SL NHSC PNI   F      +R ++ +PSG  
Sbjct: 504 MQELESGDGAVVNKKPVRLATAFFPVLSLLNHSCSPNISVSFSGTAATVRASQPIPSGQE 563

Query: 414 LELSYGPQV 422
           +   YG ++
Sbjct: 564 IFHCYGEEM 572

Gallus gallus (taxid: 9031)

>sp|Q5RGL7|SMY2B_DANRE N-lysine methyltransferase SMYD2-B OS=Danio rerio GN=smyd2b PE=2 SV=2

 Score = 62.8 bits (151), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 119/330 (36%), Gaps = 81/330 (24%)

Query: 126 TTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIP 185
            +P KGRG+        G L+ S   Y+  +S   R   C  C       A  C  C   
Sbjct: 14  ASPGKGRGLRVSRAYGVGELLFSCPAYSYVLSVGERGLICEQCFTRKKGLA-KCGKCKKA 72

Query: 186 LYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHEC 245
            YC+  C+        KN PM                                  HK EC
Sbjct: 73  FYCNANCQK-------KNWPM----------------------------------HKLEC 91

Query: 246 K-----GVHWPVILPSDVV-LAGRVLVK-SVQKNGVSMDVPNLLGKLELSHNYSQVSPES 298
           +     G +W    PS+ V L  R++ +   QK     ++  LLG++E            
Sbjct: 92  QAMCAFGENWR---PSETVRLVARIIARLKAQKERSPSEILLLLGEMEAHLEDMDNEKRE 148

Query: 299 KLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDH 358
             E+HI  +   Y    S   + P + A    ++ L SQ+  N   +         + + 
Sbjct: 149 MTEAHIAGLHQFY----SKHLDFPDHQA----LLTLFSQVHCNGFTV---------EDEE 191

Query: 359 VSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSY 418
           +S+          +GLAI+   +L NHSC PN+   +      +R  + +  G  +  SY
Sbjct: 192 LSN----------LGLAIFPDIALLNHSCSPNVIVTYRGINAEVRAVKDISPGQEIYTSY 241

Query: 419 GPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
              +  +   DRL+ L D Y F C C  C+
Sbjct: 242 IDLL--YPTADRLERLRDMYYFSCDCKECT 269

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 89/362 (24%)

Query: 128 PDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLY 187
           P KGR + +  D   G ++ S++PY    +    E+ C  C      +   C++C +  Y
Sbjct: 19  PQKGRSLFTARDFRPGEVILSQKPYICVPNNTSSESRCDGCFK--TNNLKKCSACQVVWY 76

Query: 188 CSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKG 247
           C   C+                             S+  L             H+ ECK 
Sbjct: 77  CGSSCQK----------------------------SEWKL-------------HRDECKA 95

Query: 248 V------HWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLE 301
           +          + P+ + L  R+ +K   +N   + +         + NYS V     L 
Sbjct: 96  LTRLEKEKRKFVTPT-IRLMVRLYIKRNLQNEKVLPITT-------TDNYSLVEA---LV 144

Query: 302 SHIYAI----VLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
           SH+  I    +LLY              A ++ +V LI Q     L  +  N + +  + 
Sbjct: 145 SHMSEIDEKQMLLY--------------AQMANLVNLILQFPSVDLREIAENFSKFSCNA 190

Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
           H    S C  E    G+ ++   S+ NHSC PN    F  +  ++R  + +     + +S
Sbjct: 191 H----SICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNISKDSEITIS 246

Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNT-----SDLVINAFCCVDPNCPGVVL 472
           Y    G      R K L+++Y F CQC+ CS            ++  + C +  C G +L
Sbjct: 247 YIETAG--STLTRQKSLKEQYLFHCQCARCSNFGKPHDIEESAILEGYRCANEKCTGFLL 304

Query: 473 DN 474
            +
Sbjct: 305 RD 306

Histone methyltransferase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 123/335 (36%), Gaps = 83/335 (24%)

Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           L+   +P KGRG+ +      G L+ S   YA  ++ + R  HC YC       +  C  
Sbjct: 9   LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLS-KCGR 67

Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC+  C+ +       + PM                                  H
Sbjct: 68  CKQAFYCNVECQKE-------DWPM----------------------------------H 86

Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
           K EC      G +W    PS+ V L  R+L K  + +        LL   E   +  ++ 
Sbjct: 87  KLECSPMVVFGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVKEFESHLDKLD 142

Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
            E K  ++S I A+   Y    S     P N +    +V+L +Q+  N   I        
Sbjct: 143 NEKKDLIQSDIAALHHFY----SKHLGFPDNDS----LVVLFAQVNCNGFTI-------- 186

Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
            + + +S           +G AI+   +L NHSC PN+   +      +R  + +  G  
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE 235

Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
           +  SY   +  +  +DR   L D Y F C+C  C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECQECT 268

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q54Q80|Y4059_DICDI SET and MYND domain-containing protein DDB_G0284059 OS=Dictyostelium discoideum GN=DDB_G0284059 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 369  QVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCK 428
            Q ++G A+Y   SL NHSC  N H  +   +L I++   +  G  +   YGP       K
Sbjct: 915  QDKIGYAVYPMASLMNHSCDNNTHLQYDGCSLTIKSLFNIEKGEEILGCYGPHAFLNPLK 974

Query: 429  DRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLD 473
            DRL  L +E+ F C+C  CSE +  D +          CPG   D
Sbjct: 975  DRLINLYNEFFFVCRCKACSEKSGPDPI---------KCPGSYHD 1010

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	665
359486519	799	PREDICTED: uncharacterized protein LOC10	0.986	0.821	0.573	0.0
255570887	781	heat shock protein 70 (HSP70)-interactin	0.971	0.827	0.557	0.0
357464329	785	SET and MYND domain-containing protein [	0.971	0.822	0.543	0.0
356518688	786	PREDICTED: uncharacterized protein LOC10	0.978	0.828	0.547	0.0
449459406	775	PREDICTED: SET and MYND domain-containin	0.960	0.824	0.527	0.0
356507528	784	PREDICTED: uncharacterized protein LOC10	0.968	0.821	0.535	0.0
297736653	716	unnamed protein product [Vitis vinifera]	0.852	0.791	0.578	0.0
224140669	584	tetratricopeptide repeat-containing prot	0.816	0.929	0.572	1e-178
42562487	798	tetratricopeptide repeat-containing prot	0.981	0.818	0.467	1e-177
12322390	781	unknown protein; 33246-28649 [Arabidopsi	0.956	0.814	0.447	1e-164

>gi|359486519|ref|XP_002270770.2| PREDICTED: uncharacterized protein LOC100263830 [Vitis vinifera]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/708 (57%), Positives = 496/708 (70%), Gaps = 52/708 (7%)

Query: 2   DANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
           DA+D D+NLV TL+VNRASVL K   LVECLRDCNRA+ I P+YAKAWYRRGK N SL  
Sbjct: 96  DADDVDKNLVVTLFVNRASVLHKMGFLVECLRDCNRALLISPNYAKAWYRRGKANASLNG 155

Query: 62  HDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDES---- 117
           ++DAVHDL +A + E SLAG+ QIE ELK+ILDQ  + +N V QH +N+L    +     
Sbjct: 156 YEDAVHDLNVAMHLEESLAGRSQIERELKLILDQY-KGNNSVDQHDQNDLGTLGKMYPNI 214

Query: 118 --------VQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCL 169
                   +Q++LQCV+TP KGRG+ S  +I +  LVH+EEPYA  I KHCR+THCH+C 
Sbjct: 215 FLICFILHLQIKLQCVSTPTKGRGMASLSEISQSYLVHTEEPYAAIILKHCRDTHCHFCF 274

Query: 170 NELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDN 229
           NELPAD++PCTSCSIPLYCS+ C+ QAGGQ  +N      I  ++  +LE+Y++ ITL  
Sbjct: 275 NELPADSVPCTSCSIPLYCSQHCQMQAGGQELRNNSKNHGICKNLSSDLEKYVAGITLPK 334

Query: 230 DFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSH 289
           D     E I EHKHECKGV+WP +LP ++VLAGRV+VKSV++   S +  NL+  L+LSH
Sbjct: 335 DSDSNIEWIAEHKHECKGVNWPAVLPPEIVLAGRVMVKSVEQKKHSCNASNLMDTLDLSH 394

Query: 290 NYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMN 349
           +Y  ++PESKL+ HIY++VLLYCLQHSYGFELP+NG S+SQ++ILISQI+VNS+AIVRM 
Sbjct: 395 SYKTMAPESKLDLHIYSVVLLYCLQHSYGFELPLNGISISQLIILISQIKVNSIAIVRMK 454

Query: 350 -SNNYGQSDH------VSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMI 402
             + Y   D            T  +EQVRVG AIY+  SLFNHSC PNIHAYFLSRTL +
Sbjct: 455 FMDGYSPLDQSVNFSPAGGAFTSNMEQVRVGQAIYSVASLFNHSCQPNIHAYFLSRTLFL 514

Query: 403 RTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCC 462
           R TE V  G PLELSYGPQVGQWDCKDR KFL+DEYSFRC+CSGCSELN SDLV+NAF C
Sbjct: 515 RATEHVAVGCPLELSYGPQVGQWDCKDRQKFLKDEYSFRCECSGCSELNVSDLVLNAFRC 574

Query: 463 VDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENN 522
           V+P+C G VLD+ ++  E +K +    VPQ   S PHLQ   L +D I  VA+      N
Sbjct: 575 VNPDCFGTVLDSCVIKYENKKFERFQGVPQDCISEPHLQ---LKNDGIREVAHQAFA--N 629

Query: 523 RTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLL 582
            + R  PGYCL CG+ RDLE+S+ATV EA IYI RLQ+AI+SKE+      DA R L LL
Sbjct: 630 SSFRAAPGYCLHCGAYRDLEASHATVGEAGIYISRLQEAIVSKEVPATTFSDALRSLDLL 689

Query: 583 RSILHAYNKSIA---------------------------EILEKLYGHNHIVIGYELVKL 615
           +S LHAYNK IA                           EILEKLYG NHIVIGYEL+KL
Sbjct: 690 KSTLHAYNKGIAEAEDWIAQAFCMIGELQPAMHHCKASIEILEKLYGSNHIVIGYELMKL 749

Query: 616 SSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL 663
           SSIQLSL D  A+ +ISRLAAIF  Y+G HA+ MFP+L  L+RE  KL
Sbjct: 750 SSIQLSLGDTAAMKSISRLAAIFSWYYGPHADMMFPYLGSLKREICKL 797

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570887|ref|XP_002526395.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223534257|gb|EEF35971.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/700 (55%), Positives = 494/700 (70%), Gaps = 54/700 (7%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
           +DA + D+NLVATLY+NRAS+  K   L+EC+RDCNRA+QI P+YAKAWYRRGK N  L 
Sbjct: 95  VDAFEMDKNLVATLYLNRASLFHKIGLLLECVRDCNRALQISPTYAKAWYRRGKANAGLG 154

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQV 120
           N++ AV DL +AKN E S +GKKQIE+ELKII  Q   ++++   H  N+L   + S Q+
Sbjct: 155 NYEYAVCDLNVAKNVELSFSGKKQIENELKIIAGQCAGSASRSFNHIDNSLGSFNLSCQM 214

Query: 121 -----QLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPAD 175
                +L  VTTPDKGRG+ S  DIP+ SLVH E+PYA+ + K+CR+THCHYCL ELPAD
Sbjct: 215 THSEYKLLRVTTPDKGRGMASGCDIPQASLVHVEKPYALIVLKNCRDTHCHYCLKELPAD 274

Query: 176 AIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPED 235
            +PC SCS+PLYCS+ C+  AGG+    C  +  I++S+ D+++E+I+++ L +   P+ 
Sbjct: 275 TVPCLSCSVPLYCSQLCQVHAGGKTMSYCNTKDGIDESLPDDVKEHITEVALHSPSDPDA 334

Query: 236 EHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
           E   EHKHEC GV+WP +LP+D+VLAGR+L KS+ + G SM+     G L+LSH+YSQ++
Sbjct: 335 ESFPEHKHECLGVNWPTVLPTDIVLAGRLLAKSISEIG-SME-----GTLDLSHSYSQIN 388

Query: 296 PESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNS-NNYG 354
           PE KLE HI+AIVLL CLQHS+GFELPING S+SQ +IL+SQ+RVN++A+VRM S + + 
Sbjct: 389 PEGKLELHIFAIVLLCCLQHSFGFELPINGVSLSQAIILVSQVRVNAMAVVRMKSVDAHC 448

Query: 355 QSDHVSSGS------TCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFV 408
            SDH+   S      T +VEQV VG AIYTAGSLFNHSC PN+HAYFLSRTL IRTTE +
Sbjct: 449 PSDHLVKLSHSGDALTSSVEQVPVGQAIYTAGSLFNHSCQPNVHAYFLSRTLFIRTTEHL 508

Query: 409 PSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCP 468
            +G PLELSYGPQVGQ DCKDRLKFL+D+YSFRC C+GCS +N SDLV NAF C+D NC 
Sbjct: 509 ATGCPLELSYGPQVGQRDCKDRLKFLQDKYSFRCHCNGCSIVNLSDLVQNAFRCIDLNCV 568

Query: 469 GVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYG 528
           GVVLD S++N E +K K+ P  P+       LQV  L        A+L LE +N      
Sbjct: 569 GVVLDRSVINSEIKKLKNFPRAPERQRLDLCLQVDDL--------AHLALELSNGPLHIQ 620

Query: 529 PGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHA 588
           PG CL CGS  DLE+ +  +  AWIY +RLQDAI+ K+IS  V+ DASR LG LRSILHA
Sbjct: 621 PGCCLNCGSYCDLEAVHEGMRTAWIYFKRLQDAIVVKKISTTVITDASRALGALRSILHA 680

Query: 589 YNKSIAE---------------------------ILEKLYGHNHIVIGYELVKLSSIQLS 621
           YNK IAE                           ILE LYG +HIVIGYEL+KLS+IQLS
Sbjct: 681 YNKHIAEAEDILAQAFCLVEDFQSARDHCRASIKILEMLYGPDHIVIGYELIKLSTIQLS 740

Query: 622 LDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREAL 661
           + D +AVD+I+RL AIF  YFGSHA+ +FP+L  L RE L
Sbjct: 741 MGDLSAVDSINRLGAIFERYFGSHADFIFPYLQTL-REKL 779

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464329|ref|XP_003602446.1| SET and MYND domain-containing protein [Medicago truncatula] gi|355491494|gb|AES72697.1| SET and MYND domain-containing protein [Medicago truncatula]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/703 (54%), Positives = 486/703 (69%), Gaps = 57/703 (8%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
            +  + + N +ATLY+NRA+VL K + LVECLRDC+RA+QICPSY+KAWYRRGK N++  
Sbjct: 95  FEVGEIENNFIATLYINRATVLHKMNLLVECLRDCDRALQICPSYSKAWYRRGKANIAFG 154

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQ--HTKNNLRVSDESV 118
           N+ DA+ DL IAK+ ESS  GK+QIE ELKIILDQS ++++ VVQ    +N+L  + E  
Sbjct: 155 NNRDAICDLNIAKSVESSTGGKRQIECELKIILDQS-KSTDIVVQPRQKENSLSTTGEMP 213

Query: 119 QVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIP 178
           Q++LQ V+ PDKGRG+    D+  GSLVH+EEPYA+ I K CRETHCHYCLN+LPAD +P
Sbjct: 214 QIKLQSVSVPDKGRGMVPPSDVSPGSLVHAEEPYAMVILKQCRETHCHYCLNDLPADRVP 273

Query: 179 CTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHI 238
           C SCSIPLYCS +C+ +AGGQ+F     +  I  ++ ++L EY +++   ND   +  ++
Sbjct: 274 CISCSIPLYCSHQCQIKAGGQMFMISTEDNYILKNLPNDLAEYAAEVIQYNDCEQKIGNV 333

Query: 239 FEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPES 298
            EHKHEC+GVHWP +LPSD+VLAGR+L K + KN  S D+ + + KLELSH Y  +  ES
Sbjct: 334 TEHKHECQGVHWPAVLPSDIVLAGRLLAKFLSKNS-SGDITSFVEKLELSHCYEHMPFES 392

Query: 299 KLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNS-NNYGQSD 357
           KL+SHIYAIVLLYCL+HSYG  L ING S+ QVVILISQI+VN + +VR+ S + +G SD
Sbjct: 393 KLDSHIYAIVLLYCLKHSYGAMLAINGISILQVVILISQIKVNCMTVVRLKSIDAHGLSD 452

Query: 358 -------HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPS 410
                  H S   T  VEQVRVG AIY  GSLFNHSC PN+HAYFLSRTL +RTT+ V +
Sbjct: 453 QSGGFPFHSSVHLTSNVEQVRVGKAIYKVGSLFNHSCQPNVHAYFLSRTLYLRTTQAVAA 512

Query: 411 GYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGV 470
           G  LELSYGPQVG WDCKDR  FL+DEY+F CQC+GCSE+N SD+V+NAF CV+PNC G 
Sbjct: 513 GCQLELSYGPQVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGA 572

Query: 471 VLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPG 530
           VL++ +L CEKQK KHL    +            + +D I  V      +N+ +    PG
Sbjct: 573 VLESRVLECEKQKIKHLAVADKV-----------IKNDDIYEVCLHAFNQNDASIHIQPG 621

Query: 531 YCLKCGSDRDLESSYATVDEAWIYIR-------RLQDAIISKEISRAVLLDASRFLGLLR 583
           +CLKC S RDLESS ATVD+A I I+       RLQDAI+SKEIS   + DA R L LLR
Sbjct: 622 FCLKCSSYRDLESSRATVDKALICIKRLKYGNDRLQDAILSKEISNTSISDALRSLHLLR 681

Query: 584 SILHAYNKSIAE---------------------------ILEKLYGHNHIVIGYELVKLS 616
           S LHA NK IAE                           ILEK+Y  + IVI YELVKLS
Sbjct: 682 SNLHACNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKIYDPDDIVIAYELVKLS 741

Query: 617 SIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQRE 659
           S+QLSL D++AV++I R+ AIF  Y+G HA+ +FP+L +L+RE
Sbjct: 742 SVQLSLGDNSAVNSIGRIGAIFSRYYGLHADLVFPYLQYLRRE 784

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518688|ref|XP_003528010.1| PREDICTED: uncharacterized protein LOC100783548 [Glycine max]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/698 (54%), Positives = 476/698 (68%), Gaps = 47/698 (6%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
           +D  D + NLVATLY+NRA+VL K   LVECLRDC RA+Q+CPSYAKAWYRRGK N  L 
Sbjct: 95  LDTGDMESNLVATLYINRATVLHKMSLLVECLRDCTRALQVCPSYAKAWYRRGKANALLG 154

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKV-VQHTKNNLRVSDESVQ 119
           N+ +A+ DL +AK+ E S+ G++QIE ELKI+LDQ   T+  V +QH +NN     E   
Sbjct: 155 NYKNAICDLNVAKSVEPSMGGRRQIEGELKILLDQCRSTTAVVQIQHKENNCNTVGEMPH 214

Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++LQCV+TPDKGRG+ S   I  GSLVH EEPYA+ I K CRETHCHYCLN+LPAD +PC
Sbjct: 215 IKLQCVSTPDKGRGMVSSCVISPGSLVHVEEPYAMIILKQCRETHCHYCLNDLPADRVPC 274

Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
            SCSIPLYCS +C+ +A GQ+FK  P       ++  +L EY +++   ND   E   I 
Sbjct: 275 ISCSIPLYCSHQCQTRATGQMFKIYPDYNGFFKNLPSDLGEYAAEVIQCNDSEQEIGDIT 334

Query: 240 EHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESK 299
           EHKHEC+GVHWPV+LPS++VLAGR+L + +  N    D+ N + +LELSH Y Q+  ESK
Sbjct: 335 EHKHECQGVHWPVVLPSEIVLAGRILARFLL-NSSPEDIINFVERLELSHCYKQLPSESK 393

Query: 300 LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV 359
           L+SHIYAIVLLYCLQHS G    I+  S+SQVVI+ISQI+VN + +VR+ S +   S H 
Sbjct: 394 LDSHIYAIVLLYCLQHSCGTMFSIDEVSISQVVIIISQIKVNCMTVVRLKSIDAHGSGHF 453

Query: 360 S-----SG--STCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGY 412
                 SG  ST  VEQVRVG AIY AGSLFNHSC PN+HAYFLSR L +RTT  V +G 
Sbjct: 454 GDFPFQSGAHSTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRALYLRTTNVVAAGS 513

Query: 413 PLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVL 472
            LELSYGPQVG WDCKDRL FL++EY+F C C+GCSE+N SDLV+NAF CV+PNC G VL
Sbjct: 514 QLELSYGPQVGLWDCKDRLNFLKNEYAFHCLCTGCSEVNRSDLVLNAFHCVNPNCSGAVL 573

Query: 473 DNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYC 532
           ++ +L+CE QK KH P +P          V K  +D I  V + + ++N ++    PGYC
Sbjct: 574 ESRVLDCEMQKIKHFP-IPD--------HVDK--NDDIYEVCHHVFKQNGKSIHIQPGYC 622

Query: 533 LKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKS 592
           LKCGS  DLESS+A V +A   I RLQDAI+S++IS  ++ DA R L LLR  LHAYNK 
Sbjct: 623 LKCGSYCDLESSHAAVGKALACITRLQDAILSQQISSIIISDALRSLKLLRLNLHAYNKL 682

Query: 593 IAE---------------------------ILEKLYGHNHIVIGYELVKLSSIQLSLDDH 625
            AE                           ILEKLY  + IVI YELVKLSSIQLSLDD 
Sbjct: 683 TAEAEDSIAQAFCLVGELQLSLDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDG 742

Query: 626 NAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL 663
            AV++ISR+  IF  Y+G HA+ +FP+L +L+RE  K 
Sbjct: 743 TAVESISRIDDIFSRYYGLHADLVFPYLQYLRREVEKF 780

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459406|ref|XP_004147437.1| PREDICTED: SET and MYND domain-containing protein 4-like [Cucumis sativus] gi|449500639|ref|XP_004161155.1| PREDICTED: SET and MYND domain-containing protein 4-like [Cucumis sativus]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/699 (52%), Positives = 460/699 (65%), Gaps = 60/699 (8%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
           M+A D D+NLVATLYVNRASVL K D  +ECLRDCNRA+QI  +YAKAWYRRGK NVS++
Sbjct: 96  MNAVDMDKNLVATLYVNRASVLHKMDLQLECLRDCNRALQISSTYAKAWYRRGKANVSMD 155

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQV 120
             DDA+ D  I+K+ E S  GKK I+ ELK++  Q +R SN   +H+KN L   D+ +QV
Sbjct: 156 IFDDAIRDFKISKHVEVSFNGKKLIDDELKVVQHQHSR-SNTANEHSKNKLDDFDDPIQV 214

Query: 121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCT 180
           +L  VTT  KGRG+ S  +IP  SLVH EEPYAV I KHCRETHCHYCLNELP D +PC 
Sbjct: 215 KLH-VTTSIKGRGMVSPTEIPPSSLVHVEEPYAVVILKHCRETHCHYCLNELPVDKVPCP 273

Query: 181 SCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFE 240
           SCSIPLYCS+ C+ QAGG++ +N P  ++I  ++ D+L +Y+ +ITL +      E + E
Sbjct: 274 SCSIPLYCSQHCQIQAGGRMLQNVPDVQDIFKNLSDDLRKYVQEITLCSFSELRTEDVPE 333

Query: 241 HKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKL 300
           HKHEC GVHWP ILPS++VLAGR++ K + + GV  D  N++  L LSH++ ++  +SKL
Sbjct: 334 HKHECDGVHWPAILPSEIVLAGRIVAKFIAQRGVFTDASNIVDMLNLSHHFPEMHADSKL 393

Query: 301 ESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY-GQSDHV 359
           E  IY+I+LL CLQ  +  ++ ING + SQ+ ILISQIR NS++IVRM S +  G  D  
Sbjct: 394 ECIIYSIMLLSCLQQFFPSKIAINGNTTSQIAILISQIRTNSISIVRMKSFDAPGSPDKD 453

Query: 360 SSGS-----TCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPL 414
            S S     TC +EQVRVG AIYT GSLFNHSC PNIHAYF SRTL IR T F+  G PL
Sbjct: 454 ESLSSVVPFTCNMEQVRVGQAIYTTGSLFNHSCKPNIHAYFNSRTLFIRATVFMAVGCPL 513

Query: 415 ELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDN 474
           ELSYGPQVGQ DCKDRL+ L+DEYSF CQCSGCS ++ SDLVINAFCC++PNC GVVLD 
Sbjct: 514 ELSYGPQVGQLDCKDRLQLLKDEYSFNCQCSGCSTVHISDLVINAFCCINPNCRGVVLDR 573

Query: 475 SILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRY---GPGY 531
           SI +CE  K K                      D++ +   ++LE   +T  +   GP +
Sbjct: 574 SIFSCENTKTK----------------------DFLTVNDQMILEPFMQTDSFLHAGPSH 611

Query: 532 CLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNK 591
           CLKCGS  D++SS  TVD+A I+  RLQ  I    +S   + DA   L  L+S LH YN+
Sbjct: 612 CLKCGSYCDIKSSRLTVDKAGIHFTRLQQEINLNRVSETTVSDALGALISLKSTLHEYNR 671

Query: 592 SIAE---------------------------ILEKLYGHNHIVIGYELVKLSSIQLSLDD 624
            IAE                           ILEKLYG NHI IG EL KLSSI +S+ D
Sbjct: 672 RIAEAEDNLSQAFSLLGKLELAAEHCKASIRILEKLYGENHIAIGNELSKLSSILISVGD 731

Query: 625 HNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL 663
           HNAVD I RL+ IF  Y+GS+  TMFP L  L+ E  K 
Sbjct: 732 HNAVDCIKRLSKIFRCYYGSNVNTMFPFLNILEEETHKF 770

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507528|ref|XP_003522516.1| PREDICTED: uncharacterized protein LOC100794609 [Glycine max]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/698 (53%), Positives = 463/698 (66%), Gaps = 54/698 (7%)

Query: 3   ANDKDRNLV-ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
           A+D + NLV ATLY+NRA+VL K   +VECLRDC RA+QICPSYAKAWYRRGK N SL N
Sbjct: 98  ASDMESNLVVATLYINRATVLHKMSLIVECLRDCTRALQICPSYAKAWYRRGKANASLGN 157

Query: 62  HDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSN-KVVQHTKNNLRVSDESVQV 120
           + +A+ DL +AK+ E S+ GK+QIE ELKI+LDQ   T+  + +QHT+NN     E   +
Sbjct: 158 YKNAICDLNVAKSVEPSMGGKRQIEGELKILLDQCKSTTAVEQIQHTENNCNTVGEMPHI 217

Query: 121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCT 180
           +LQ V+TPDKGRGI S   I  G LVH+EEPYA+ I K CRETHCHYCLN+LPAD +PC 
Sbjct: 218 KLQRVSTPDKGRGIVSSCVISPGFLVHAEEPYAMIILKQCRETHCHYCLNDLPADRVPCI 277

Query: 181 SCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFE 240
            CSIPLYCS +CR +A GQ+FK  P       ++  +L EY +++   ND   E   I E
Sbjct: 278 LCSIPLYCSHQCRIRATGQMFKIYPEYNGFFKNLPSDLGEYAAEVIQCNDSELEIGDITE 337

Query: 241 HKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKL 300
           HKHEC+GVHWP++LPS++VLAGR+L  S       M + ++L   ELSH Y Q+S E KL
Sbjct: 338 HKHECQGVHWPMVLPSEIVLAGRILASSC------MLMDSVLLVQELSHCYKQMSSERKL 391

Query: 301 ESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMN-------SNNY 353
           +SHIYAIVLLYCLQHS G    I+   +SQVVI+ISQI+VN + +VR+        S  +
Sbjct: 392 DSHIYAIVLLYCLQHSCGIMFSIDEVFISQVVIIISQIKVNCMTVVRLKSIDAHGLSGRF 451

Query: 354 GQSDHVSSG-STCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGY 412
           G+    S   ST  VEQVRVG AIY AGSLFNHSC PNIHAYFLSRTL +RTT  V +  
Sbjct: 452 GEFPFQSGAHSTSNVEQVRVGKAIYKAGSLFNHSCQPNIHAYFLSRTLYLRTTNVVAAES 511

Query: 413 PLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVL 472
            LELSYGPQVG WDCKDRL FL+DEY+F CQC+GCSE+N SD+V+NAF CV+ NC G VL
Sbjct: 512 QLELSYGPQVGLWDCKDRLNFLKDEYAFLCQCTGCSEVNLSDIVLNAFHCVNTNCSGTVL 571

Query: 473 DNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYC 532
           ++ + + EKQK KH P       +A            I  V   + ++N  +    PGYC
Sbjct: 572 ESRVHDSEKQKIKHFPISDHVDKNAD-----------IYEVCLRVFKQNGASIDIQPGYC 620

Query: 533 LKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKS 592
           LKCGS  DLESS A V +A   I+RLQDAI+S++IS   + DA + L LLR  LHAYNK 
Sbjct: 621 LKCGSYCDLESSRAAVSKALTCIKRLQDAILSQQISSITISDALKSLRLLRLNLHAYNKL 680

Query: 593 IAE---------------------------ILEKLYGHNHIVIGYELVKLSSIQLSLDDH 625
           IAE                           ILEKLY  + IVI YELVKLSSIQLSL D 
Sbjct: 681 IAEAEDSIAQAFCLVGELQLSLDYCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLGDG 740

Query: 626 NAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL 663
            AV++ISR+  IF  Y+G HA+ +FP+L +L+RE  K 
Sbjct: 741 TAVESISRIDDIFSRYYGLHADLVFPYLQYLRREIKKF 778

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736653|emb|CBI25524.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/608 (57%), Positives = 434/608 (71%), Gaps = 41/608 (6%)

Query: 2   DANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
           DA+D D+NLV TL+VNRASVL K   LVECLRDCNRA+ I P+YAKAWYRRGK N SL  
Sbjct: 96  DADDVDKNLVVTLFVNRASVLHKMGFLVECLRDCNRALLISPNYAKAWYRRGKANASLNG 155

Query: 62  HDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNL-------RVS 114
           ++DAVHDL +A + E SLAG+ QIE ELK+ILDQ  + +N V QH +N+L        V+
Sbjct: 156 YEDAVHDLNVAMHLEESLAGRSQIERELKLILDQY-KGNNSVDQHDQNDLGTLGKMPYVT 214

Query: 115 DESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPA 174
           +E +Q++LQCV+TP KGRG+ S  +I +  LVH+EEPYA  I KHCR+THCH+C NELPA
Sbjct: 215 EEQLQIKLQCVSTPTKGRGMASLSEISQSYLVHTEEPYAAIILKHCRDTHCHFCFNELPA 274

Query: 175 DAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPE 234
           D++PCTSCSIPLYCS+ C+ QAGGQ  +N     + + ++                    
Sbjct: 275 DSVPCTSCSIPLYCSQHCQMQAGGQELRNNSKNHDSDSNI-------------------- 314

Query: 235 DEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQV 294
            E I EHKHECKGV+WP +LP ++VLAGRV+VKSV++   S +  NL+  L+LSH+Y  +
Sbjct: 315 -EWIAEHKHECKGVNWPAVLPPEIVLAGRVMVKSVEQKKHSCNASNLMDTLDLSHSYKTM 373

Query: 295 SPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMN-SNNY 353
           +PESKL+ HIY++VLLYCLQHSYGFELP+NG S+SQ++ILISQI+VNS+AIVRM   + Y
Sbjct: 374 APESKLDLHIYSVVLLYCLQHSYGFELPLNGISISQLIILISQIKVNSIAIVRMKFMDGY 433

Query: 354 GQSDH------VSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEF 407
              D            T  +EQVRVG AIY+  SLFNHSC PNIHAYFLSRTL +R TE 
Sbjct: 434 SPLDQSVNFSPAGGAFTSNMEQVRVGQAIYSVASLFNHSCQPNIHAYFLSRTLFLRATEH 493

Query: 408 VPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNC 467
           V  G PLELSYGPQVGQWDCKDR KFL+DEYSFRC+CSGCSELN SDLV+NAF CV+P+C
Sbjct: 494 VAVGCPLELSYGPQVGQWDCKDRQKFLKDEYSFRCECSGCSELNVSDLVLNAFRCVNPDC 553

Query: 468 PGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRY 527
            G VLD+ ++  E +K +    VPQ   S PHLQ   L +D I  VA+      N + R 
Sbjct: 554 FGTVLDSCVIKYENKKFERFQGVPQDCISEPHLQ---LKNDGIREVAHQAFA--NSSFRA 608

Query: 528 GPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILH 587
            PGYCL CG+ RDLE+S+ATV EA IYI RLQ+AI+SKE+      DA R L LL+S LH
Sbjct: 609 APGYCLHCGAYRDLEASHATVGEAGIYISRLQEAIVSKEVPATTFSDALRSLDLLKSTLH 668

Query: 588 AYNKSIAE 595
           AYNK IAE
Sbjct: 669 AYNKGIAE 676

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140669|ref|XP_002323703.1| tetratricopeptide repeat-containing protein [Populus trichocarpa] gi|222868333|gb|EEF05464.1| tetratricopeptide repeat-containing protein [Populus trichocarpa]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/580 (57%), Positives = 407/580 (70%), Gaps = 37/580 (6%)

Query: 113 VSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNEL 172
           V+DE  Q++L  V+TPDKGRG+ SQ DIP+ SLVH EEPYA+ I K CRETHCHYCLN+L
Sbjct: 8   VTDEPCQLKLSQVSTPDKGRGMASQCDIPQASLVHKEEPYALIILKSCRETHCHYCLNQL 67

Query: 173 PADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFY 232
            AD +PCTSC+IPLYCS  C+ QAGG+ F N   +    +S   +  EY  +  L +D  
Sbjct: 68  RADTVPCTSCTIPLYCSEHCQIQAGGEPFSNFQDKIGTKESHSHSHGEY--KFALCSDSN 125

Query: 233 PEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYS 292
           P  E   EHKHEC GV+WP ILPSD+VLAGR+LVKS  +   +    N L  L LSH+Y+
Sbjct: 126 P-IECFPEHKHECLGVNWPAILPSDIVLAGRILVKSTSQRCSTES--NALCDLGLSHSYT 182

Query: 293 QVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNS-- 350
           Q++PESKLE HIYAIVLL CLQHS+GFELPING S+SQ +ILISQIRVNS+AIVRM S  
Sbjct: 183 QITPESKLELHIYAIVLLCCLQHSFGFELPINGVSLSQTIILISQIRVNSMAIVRMKSVD 242

Query: 351 ---NNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEF 407
              + + +   V    T ++EQV VG AIY A SLFNHSCLPNIHAYFLSRTL IRTTE+
Sbjct: 243 DPPDQFRKLTSVGDALTSSLEQVPVGQAIYKAASLFNHSCLPNIHAYFLSRTLFIRTTEY 302

Query: 408 VPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNC 467
           V +G PLELSYGPQVGQ DC+DRL++L D+YSFRCQC GCS+LN SDLV+NAFCCV+ NC
Sbjct: 303 VSTGCPLELSYGPQVGQSDCEDRLRYLADKYSFRCQCRGCSQLNLSDLVLNAFCCVNHNC 362

Query: 468 PGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRY 527
            GVVL+++I+N E +K  + P  P+      HLQ  KL+   I  VA L L+ NN +   
Sbjct: 363 AGVVLESTIINGETRKLNNFPRAPEKQKFDSHLQGHKLNIVDINDVASLALKFNNSSLHI 422

Query: 528 GPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILH 587
            PG+CL CGS RDL++S+  +++AW YI+RLQ+AIISK+IS   LLDASR LG+LRS LH
Sbjct: 423 HPGFCLHCGSHRDLDASHEAINKAWSYIKRLQEAIISKDISGTTLLDASRALGILRSTLH 482

Query: 588 AYNKSIAE---------------------------ILEKLYGHNHIVIGYELVKLSSIQL 620
           AYNKS+AE                           IL+ LY  +HIVIGYELVKL+SIQL
Sbjct: 483 AYNKSVAEAEDNLAQAFCLVRDFQSAREHCKESIKILQTLYDPDHIVIGYELVKLASIQL 542

Query: 621 SLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREA 660
           SLDD  AVD+ + L  IF  YFG H + + P+  FL+R A
Sbjct: 543 SLDDPAAVDSTNHLGLIFARYFGPHVDFIVPYQQFLKRVA 582

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562487|ref|NP_174606.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332193468|gb|AEE31589.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 330/706 (46%), Positives = 474/706 (67%), Gaps = 53/706 (7%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
           +DA D D++L+A+L++NRA+VL     L E LRDC+RA++I P YAKAWYRRGK+N  L 
Sbjct: 95  LDAIDGDKSLLASLFLNRANVLHNLGLLKESLRDCHRALRIDPYYAKAWYRRGKLNTLLG 154

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDES--- 117
           N+ DA  D+T++ + ESSL GKKQ+++ELK I D  N   N+ ++H  +  R S+++   
Sbjct: 155 NYKDAFRDITVSMSLESSLVGKKQLQNELKAIPDYQN---NQTLEH--DEYRPSNDAGVD 209

Query: 118 ------VQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNE 171
                 ++V+L+CV+T +KGRG+ S+ DI E S++H EEP++V ISK CRETHCH+CLNE
Sbjct: 210 HLPSVQMEVKLRCVSTKEKGRGMVSECDIEEASVIHVEEPFSVVISKSCRETHCHFCLNE 269

Query: 172 LPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDF 231
           LPAD +PC SCSIP+YCS  C+ Q+GG +  N   + +I   + D++ E+I  +T  + +
Sbjct: 270 LPADTVPCPSCSIPVYCSESCQIQSGGMLSTNEMDKHHIFQKLPDDIVEHIKGVTSADIY 329

Query: 232 YPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNY 291
           Y   + I EH+HEC+G +WP +LPSD VLAGR+++K + +   + D+ NL   LELSH Y
Sbjct: 330 YFATDLIQEHQHECRGANWPAVLPSDAVLAGRIIMKLINQGKAATDLSNLQEILELSHTY 389

Query: 292 SQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSN 351
           S+++PE+KLE H+ +IVL++CL  S    L +  ASV+Q +IL+SQI+VNS+A+ RM S+
Sbjct: 390 SKMNPENKLELHLLSIVLIWCLSKSSCPNLSVCEASVTQTIILLSQIKVNSIAVARMKSS 449

Query: 352 NYGQSDH-VSSGSTCT------VEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRT 404
             G S   + SG+  T      +EQ+RVG A+Y  GSLFNHSC PNIH YFLSR L+++T
Sbjct: 450 --GDSFKCLPSGNISTKEPIQSLEQIRVGQALYKTGSLFNHSCKPNIHLYFLSRGLIMQT 507

Query: 405 TEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVD 464
           TEFVP+G PLELSYGP+VG+WDCK+R++FLE+EY F C+C GC+++N SDLVIN + CV+
Sbjct: 508 TEFVPTGCPLELSYGPEVGKWDCKNRIRFLEEEYFFHCRCRGCAQINISDLVINGYGCVN 567

Query: 465 PNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRT 524
            NC GVVLD+++  CE +K  H    P+       ++  K+ +D +G VA  LL + + +
Sbjct: 568 TNCTGVVLDSNVATCESEKLNHFFTAPRNVDQQVQMR-EKVYAD-VGEVASSLLSKPSGS 625

Query: 525 SRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRS 584
               P  CLKCGS  D+E+S+A V++AW ++RR+++ + S   + +VL D SR + +LR+
Sbjct: 626 LHIEPEICLKCGSRCDIENSHAEVNKAWNHMRRVEELMNSGRANYSVLSDCSRSIAVLRT 685

Query: 585 ILHAYNKSIAE---------------------------ILEKLYGHNHIVIGYELVKLSS 617
            LH YNK IA+                           IL++LY   H+VIG E+VKL+S
Sbjct: 686 FLHMYNKDIADAEDKVAQACYLAGELVDARKHCEASIKILKRLYEDEHVVIGNEMVKLAS 745

Query: 618 IQL-SLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALK 662
           IQL S D   A DT  R + IF  Y+GSHAET+F +L  L++E  K
Sbjct: 746 IQLASGDSSGAWDTTKRSSQIFSKYYGSHAETLFSYLPCLKQETAK 791

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322390|gb|AAG51222.1|AC051630_19 unknown protein; 33246-28649 [Arabidopsis thaliana]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 316/706 (44%), Positives = 459/706 (65%), Gaps = 70/706 (9%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
           +DA D D++L+A+L++NRA+VL     L E LRDC+RA++I P YAKAWYRRGK+N  L 
Sbjct: 95  LDAIDGDKSLLASLFLNRANVLHNLGLLKESLRDCHRALRIDPYYAKAWYRRGKLNTLLG 154

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDES--- 117
           N+ DA  D+T++ + ESSL GKKQ+++ELK I D  N   N+ ++H  +  R S+++   
Sbjct: 155 NYKDAFRDITVSMSLESSLVGKKQLQNELKAIPDYQN---NQTLEH--DEYRPSNDAGVD 209

Query: 118 ------VQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNE 171
                 ++V+L+CV+T +KGRG+ S+ DI E S++H EEP++V                 
Sbjct: 210 HLPSVQMEVKLRCVSTKEKGRGMVSECDIEEASVIHVEEPFSV----------------- 252

Query: 172 LPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDF 231
           LPAD +PC SCSIP+YCS  C+ Q+GG +  N   + +I   + D++ E+I  +T  + +
Sbjct: 253 LPADTVPCPSCSIPVYCSESCQIQSGGMLSTNEMDKHHIFQKLPDDIVEHIKGVTSADIY 312

Query: 232 YPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNY 291
           Y   + I EH+HEC+G +WP +LPSD VLAGR+++K + +   + D+ NL   LELSH Y
Sbjct: 313 YFATDLIQEHQHECRGANWPAVLPSDAVLAGRIIMKLINQGKAATDLSNLQEILELSHTY 372

Query: 292 SQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSN 351
           S+++PE+KLE H+ +IVL++CL  S    L +  ASV+Q +IL+SQI+VNS+A+ RM S+
Sbjct: 373 SKMNPENKLELHLLSIVLIWCLSKSSCPNLSVCEASVTQTIILLSQIKVNSIAVARMKSS 432

Query: 352 NYGQSDH-VSSGSTCT------VEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRT 404
             G S   + SG+  T      +EQ+RVG A+Y  GSLFNHSC PNIH YFLSR L+++T
Sbjct: 433 --GDSFKCLPSGNISTKEPIQSLEQIRVGQALYKTGSLFNHSCKPNIHLYFLSRGLIMQT 490

Query: 405 TEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVD 464
           TEFVP+G PLELSYGP+VG+WDCK+R++FLE+EY F C+C GC+++N SDLVIN + CV+
Sbjct: 491 TEFVPTGCPLELSYGPEVGKWDCKNRIRFLEEEYFFHCRCRGCAQINISDLVINGYGCVN 550

Query: 465 PNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRT 524
            NC GVVLD+++  CE +K  H    P+       ++  K+ +D +G VA  LL + + +
Sbjct: 551 TNCTGVVLDSNVATCESEKLNHFFTAPRNVDQQVQMR-EKVYAD-VGEVASSLLSKPSGS 608

Query: 525 SRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRS 584
               P  CLKCGS  D+E+S+A V++AW ++RR+++ + S   + +VL D SR + +LR+
Sbjct: 609 LHIEPEICLKCGSRCDIENSHAEVNKAWNHMRRVEELMNSGRANYSVLSDCSRSIAVLRT 668

Query: 585 ILHAYNKSIAE---------------------------ILEKLYGHNHIVIGYELVKLSS 617
            LH YNK IA+                           IL++LY   H+VIG E+VKL+S
Sbjct: 669 FLHMYNKDIADAEDKVAQACYLAGELVDARKHCEASIKILKRLYEDEHVVIGNEMVKLAS 728

Query: 618 IQL-SLDDHNAVDTISRLAAIFLHYFGSHAETMFPHLLFLQREALK 662
           IQL S D   A DT  R + IF  Y+GSHAET+F +L  L++E  K
Sbjct: 729 IQLASGDSSGAWDTTKRSSQIFSKYYGSHAETLFSYLPCLKQETAK 774

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	665
TAIR|locus:2007013	798	TPR9 "tetratricopeptide repeat	0.899	0.749	0.484	3.8e-170
UNIPROTKB|E1C7E7	797	SMYD4 "SET and MYND domain-con	0.209	0.174	0.289	1.4e-18
FB|FBgn0036282	663	Smyd4 "SET and MYND domain pro	0.341	0.342	0.230	1.8e-17
FB|FBgn0033633	660	CG7759 [Drosophila melanogaste	0.267	0.269	0.279	5.2e-17
UNIPROTKB|J9NYI0	806	SMYD4 "Uncharacterized protein	0.336	0.277	0.255	4e-16
UNIPROTKB|E2R4V0	794	SMYD4 "Uncharacterized protein	0.332	0.278	0.259	4.7e-16
RGD|1562635	428	Smyd3 "SET and MYND domain con	0.129	0.200	0.329	2.9e-15
MGI|MGI:2442796	799	Smyd4 "SET and MYND domain con	0.257	0.214	0.243	3.9e-14
ZFIN|ZDB-GENE-051120-138	429	smyd3 "SET and MYND domain con	0.112	0.174	0.363	7.6e-14
UNIPROTKB|I3LVI1	803	SMYD4 "Uncharacterized protein	0.203	0.168	0.265	8.7e-14

TAIR|locus:2007013 TPR9 "tetratricopeptide repeat 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1513 (537.7 bits), Expect = 3.8e-170, Sum P(2) = 3.8e-170
 Identities = 295/609 (48%), Positives = 426/609 (69%)

Query:     1 MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
             +DA D D++L+A+L++NRA+VL     L E LRDC+RA++I P YAKAWYRRGK+N  L 
Sbjct:    95 LDAIDGDKSLLASLFLNRANVLHNLGLLKESLRDCHRALRIDPYYAKAWYRRGKLNTLLG 154

Query:    61 NHDDAVHDLTIAKNRESSLAGKKQIESELKIILD-QSNRTSNKVVQHTKNNLRVSD-ESV 118
             N+ DA  D+T++ + ESSL GKKQ+++ELK I D Q+N+T         N+  V    SV
Sbjct:   155 NYKDAFRDITVSMSLESSLVGKKQLQNELKAIPDYQNNQTLEHDEYRPSNDAGVDHLPSV 214

Query:   119 Q--VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADA 176
             Q  V+L+CV+T +KGRG+ S+ DI E S++H EEP++V ISK CRETHCH+CLNELPAD 
Sbjct:   215 QMEVKLRCVSTKEKGRGMVSECDIEEASVIHVEEPFSVVISKSCRETHCHFCLNELPADT 274

Query:   177 IPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDE 236
             +PC SCSIP+YCS  C+ Q+GG +  N   + +I   + D++ E+I  +T  + +Y   +
Sbjct:   275 VPCPSCSIPVYCSESCQIQSGGMLSTNEMDKHHIFQKLPDDIVEHIKGVTSADIYYFATD 334

Query:   237 HIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSP 296
              I EH+HEC+G +WP +LPSD VLAGR+++K + +   + D+ NL   LELSH YS+++P
Sbjct:   335 LIQEHQHECRGANWPAVLPSDAVLAGRIIMKLINQGKAATDLSNLQEILELSHTYSKMNP 394

Query:   297 ESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYG-- 354
             E+KLE H+ +IVL++CL  S    L +  ASV+Q +IL+SQI+VNS+A+ RM S+     
Sbjct:   395 ENKLELHLLSIVLIWCLSKSSCPNLSVCEASVTQTIILLSQIKVNSIAVARMKSSGDSFK 454

Query:   355 --QSDHVSSGSTC-TVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSG 411
                S ++S+     ++EQ+RVG A+Y  GSLFNHSC PNIH YFLSR L+++TTEFVP+G
Sbjct:   455 CLPSGNISTKEPIQSLEQIRVGQALYKTGSLFNHSCKPNIHLYFLSRGLIMQTTEFVPTG 514

Query:   412 YPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVV 471
              PLELSYGP+VG+WDCK+R++FLE+EY F C+C GC+++N SDLVIN + CV+ NC GVV
Sbjct:   515 CPLELSYGPEVGKWDCKNRIRFLEEEYFFHCRCRGCAQINISDLVINGYGCVNTNCTGVV 574

Query:   472 LDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGY 531
             LD+++  CE +K  H    P+       ++  K+ +D +G VA  LL + + +    P  
Sbjct:   575 LDSNVATCESEKLNHFFTAPRNVDQQVQMRE-KVYAD-VGEVASSLLSKPSGSLHIEPEI 632

Query:   532 CLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNK 591
             CLKCGS  D+E+S+A V++AW ++RR+++ + S   + +VL D SR + +LR+ LH YNK
Sbjct:   633 CLKCGSRCDIENSHAEVNKAWNHMRRVEELMNSGRANYSVLSDCSRSIAVLRTFLHMYNK 692

Query:   592 SIAEILEKL 600
              IA+  +K+
Sbjct:   693 DIADAEDKV 701

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

UNIPROTKB|E1C7E7 SMYD4 "SET and MYND domain-containing protein 4" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 1.4e-18, Sum P(4) = 1.4e-18
 Identities = 44/152 (28%), Positives = 70/152 (46%)

Query:   335 ISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAY 394
             + Q++ N+ AI  M     G       G+    + VR+  A +   SL NHSC PNI   
Sbjct:   491 VLQLQCNAQAITVMQELESGD------GAVVNKKPVRLATAFFPVLSLLNHSCSPNISVS 544

Query:   395 FLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSD 454
             F      +R ++ +PSG  +   YGP   +    +R + L  +Y F C+C  C +   SD
Sbjct:   545 FSGTAATVRASQPIPSGQEIFHCYGPHRCRMRVAERQQLLS-QYFFECRCQACLDELESD 603

Query:   455 L----VINAFCCVDPNCPGVVLDNSILNCEKQ 482
             +    + N+FCC  P+C   +    +L C  +
Sbjct:   604 VESVSMRNSFCC--PSCQASMQGEEMLCCSNE 633

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0036282 Smyd4 "SET and MYND domain protein 4" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 55/239 (23%), Positives = 105/239 (43%)

Query:   241 HKHECKGVHWPVILPSDVV--LAGRVLVKSVQ-KNGVSMDVPNLLGKLELSHNYSQVSPE 297
             H+ EC+ +   +     ++  +A R+  ++   + G++    NLL +   SH   +  P+
Sbjct:   334 HRFECEYMDLMIGSGMSILCFIALRIFTQAPSLEQGLA--TANLLFEHLCSHEEDR-QPD 390

Query:   298 SKLESHIYAIVLLYCLQHSYGF-ELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQS 356
               L   + +  LL  LQ S  F      G + + V + ++   +  L +++ N++   Q+
Sbjct:   391 DYLRRALMSGFLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQT 450

Query:   357 DHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLEL 416
                        + V +   +Y  GS FNH C P+   +F+ + L++  T    +   + +
Sbjct:   451 QVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATRPHRANELVAV 510

Query:   417 SYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSE----LNTSDLVINAFCCVDPNCPGVV 471
             +YGP   + + K+R + L   YSF C C  C E    L   D  +  F C   NC  ++
Sbjct:   511 NYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQKLDKQVR-FWCTSANCSNLL 568

GO:0007562 "eclosion" evidence=IMP

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=IDA

FB|FBgn0033633 CG7759 [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
 Identities = 54/193 (27%), Positives = 87/193 (45%)

Query:   286 ELSHNYSQVSPESKLESHIYAIVLLYCLQHS--YGFELPINGASVSQVVILISQIRVNSL 343
             +L  +  +  P +  +  + A  L  CL+    +G E P       +V I+ S + + SL
Sbjct:   382 QLERHQGERQPSNFFQHVLMARFLTNCLRAGGYFGSE-P----KPDEVSIICSLV-LRSL 435

Query:   344 AIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIR 403
               ++ N++   +    SS      + + +G AIY   +LFNHSC P +  YF   T+ I 
Sbjct:   436 QFIQFNTHEVAELHKFSSSGR--EKSIFIGGAIYPTLALFNHSCDPGVVRYFRGTTIHIN 493

Query:   404 TTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSEL--NTSDL---VIN 458
             +   + +G P+  +YGP   Q +  +R   L+D Y F C C  C +      DL   VI 
Sbjct:   494 SVRPIEAGLPINENYGPMYTQDERSERQARLKDLYWFECSCDACIDNWPKFDDLPRDVIR 553

Query:   459 AFCCVDPNCPGVV 471
               C    NC  V+
Sbjct:   554 FRCDAPNNCSAVI 566

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=ISS

UNIPROTKB|J9NYI0 SMYD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 4.0e-16, Sum P(4) = 4.0e-16
 Identities = 62/243 (25%), Positives = 95/243 (39%)

Query:   320 ELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTA 379
             EL I G ++ + ++   Q++ N+ AI  +       S      + C   Q+R+   I+  
Sbjct:   484 ELNIWGVAMLKHML---QLQCNAQAITTIQETALSGS---KENNVCNSRQIRLATGIFPV 537

Query:   380 GSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYS 439
              SL NHSC PN    F S    IR ++ +  G  +   YGP   +    DR + L  +Y 
Sbjct:   538 VSLLNHSCSPNTSVSFSSTVATIRASQQIGKGQEILHCYGPHYSRMGVADRQQKLRSQYF 597

Query:   440 FRCQCSGCSELNTSDLVI---NAFCCVDPNCPGVVLDNSILNC------EKQKRKHLPAV 490
             F C C  C +     +      AFCC    C  ++    IL+C      E   R HL + 
Sbjct:   598 FDCGCPACQKEKHRAVARPRWEAFCC--NQCGALLQGGDILSCGSMSCTESVSRDHLTSQ 655

Query:   491 PQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRD-LESSYATVD 549
              Q       +    L S  +     LLLE  +    +        G   D L  +YA + 
Sbjct:   656 LQDLQQQVGIAQELLRSGKLEQAVQLLLECRHDAESFLSAEHSMVGEIEDSLAQTYAALG 715

Query:   550 EAW 552
             + W
Sbjct:   716 D-W 717

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R4V0 SMYD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 4.7e-16, Sum P(4) = 4.7e-16
 Identities = 63/243 (25%), Positives = 97/243 (39%)

Query:   320 ELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTA 379
             EL I G ++ + ++   Q++ N+ AI  +     G  ++    + C   Q+R+   I+  
Sbjct:   475 ELNIWGVAMLKHML---QLQCNAQAITTIQET--GSKEN----NVCNSRQIRLATGIFPV 525

Query:   380 GSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYS 439
              SL NHSC PN    F S    IR ++ +  G  +   YGP   +    DR + L  +Y 
Sbjct:   526 VSLLNHSCSPNTSVSFSSTVATIRASQQIGKGQEILHCYGPHYSRMGVADRQQKLRSQYF 585

Query:   440 FRCQCSGCSELNTSDLVI---NAFCCVDPNCPGVVLDNSILNC------EKQKRKHLPAV 490
             F C C  C +     +      AFCC    C  ++    IL+C      E   R HL + 
Sbjct:   586 FDCGCPACQKEKHRAVARPRWEAFCC--NQCGALLQGGDILSCGSMSCTESVSRDHLTSQ 643

Query:   491 PQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRD-LESSYATVD 549
              Q       +    L S  I     LLLE  +    +        G   D L  +YA + 
Sbjct:   644 LQDLQQQVGIAQELLRSGKIEQAVQLLLECRHDAESFLSAEHSMVGEIEDSLAQTYAALG 703

Query:   550 EAW 552
             + W
Sbjct:   704 D-W 705

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1562635 Smyd3 "SET and MYND domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:   360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYG 419
             +S + C  E   VG+ +Y + SL NHSC PN    F    L++R    + +G  L + Y 
Sbjct:   181 NSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYL 240

Query:   420 PQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
               +     ++R K L D+Y F C C  C
Sbjct:   241 DML--MTSEERRKQLRDQYCFECDCIRC 266

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISO

MGI|MGI:2442796 Smyd4 "SET and MYND domain containing 4" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 3.9e-14, Sum P(4) = 3.9e-14
 Identities = 45/185 (24%), Positives = 79/185 (42%)

Query:   320 ELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTA 379
             +L + GA++ + ++   Q++ N+ AI  +     G ++ + + S     Q+R+   I+  
Sbjct:   480 DLTVWGAAMLRHML---QLQCNAQAITSICHT--GSNESIITNS----RQIRLATGIFPV 530

Query:   380 GSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYS 439
              SL NHSC PN    F      +R  + +  G  +   YGP   +    +R + L  +Y 
Sbjct:   531 VSLLNHSCRPNTSVSFTGTVATVRAAQRIAKGQEILHCYGPHESRMGVAERQQRLSSQYF 590

Query:   440 FRCQCSGCSELNTSDLVI---NAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSS 496
             F C+C  C              AFCC    C  ++  N +L+C  +   +  +  Q  S 
Sbjct:   591 FDCRCGACHAETLRAAAAPRWEAFCC--KTCRALMQGNDVLSCSNESCTNSVSRDQLVSR 648

Query:   497 APHLQ 501
                LQ
Sbjct:   649 LQDLQ 653

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-051120-138 smyd3 "SET and MYND domain containing 3" [Danio rerio (taxid:7955)]

 Score = 135 (52.6 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
 Identities = 28/77 (36%), Positives = 40/77 (51%)

Query:   372 VGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRL 431
             VG+ +Y + SL NH C PN    F  + L +R    + S   L +SY   +     KDR 
Sbjct:   194 VGVGLYPSMSLLNHDCQPNCIMMFEGKRLTLRAVRVIRSAEELTISYTDILAP--SKDRR 251

Query:   432 KFLEDEYSFRCQCSGCS 448
               L+++Y FRC+C  CS
Sbjct:   252 SQLQEQYHFRCECKRCS 268

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0060538 "skeletal muscle organ development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

UNIPROTKB|I3LVI1 SMYD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 8.7e-14, Sum P(5) = 8.7e-14
 Identities = 39/147 (26%), Positives = 66/147 (44%)

Query:   337 QIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFL 396
             Q++ N+ AI  +      Q+D+ +S S      + +G+ +Y   SL NHSC PN    F+
Sbjct:   497 QLQCNAQAITAIQ-----QTDNKNS-SKSNSNAMSLGVLVYQDLSLVNHSCSPNASVSFI 550

Query:   397 SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLV 456
             S    +R ++ +  G  +   YGP   +    +R + L  +Y F C C  C         
Sbjct:   551 STVATVRASQPIRKGQEVLHCYGPHESRMGVAERHQKLRSQYFFDCNCPPCEREKQRPSA 610

Query:   457 IN----AFCCVDPNCPGVVLDNSILNC 479
             +     AFCC    C  ++  + +L+C
Sbjct:   611 LEPRREAFCC--HRCRALLQGDDVLSC 635

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	665
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-07
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	4e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL-ENHDDAVHDLT 70
          A    N  + L K     E +    +A+++ P  A+A+Y      + L +++++A+ DL 
Sbjct: 3  AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 71 IA 72
           A
Sbjct: 63 KA 64

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
          A  Y N A+   K     E L D  +A+++ P  AKA+Y  G     L  +++A+     
Sbjct: 34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93

Query: 72 AKN 74
          A  
Sbjct: 94 ALE 96

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDA 65
          A LY +RA    K  +  E + D N+A+++ PS AKA+ R+G   + LE +  A
Sbjct: 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
            +N  ++  K     E L    +A+++ P  A A+Y        L  +++A+
Sbjct: 2  ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEAL 54

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	665
KOG2084	482	consensus Predicted histone tail methylase contain	99.88
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	99.6
KOG0553	304	consensus TPR repeat-containing protein [General f	99.46
KOG4234	271	consensus TPR repeat-containing protein [General f	99.39
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.23
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.12
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.01
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.98
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.95
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.92
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.83
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.83
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.76
PRK15359	144	type III secretion system chaperone protein SscB;	98.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.66
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.61
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.6
PF13371	73	TPR_9: Tetratricopeptide repeat	98.52
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.4
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.37
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.37
PRK11189	296	lipoprotein NlpI; Provisional	98.33
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.31
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.29
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.26
KOG2589	453	consensus Histone tail methylase [Chromatin struct	98.24
PRK11189	296	lipoprotein NlpI; Provisional	98.21
PRK15359	144	type III secretion system chaperone protein SscB;	98.2
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.12
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.12
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.07
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.06
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.98
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.95
KOG0553	304	consensus TPR repeat-containing protein [General f	97.83
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.82
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.81
KOG4555	175	consensus TPR repeat-containing protein [Function	97.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.79
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.78
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.73
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.72
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.67
COG2940	480	Proteins containing SET domain [General function p	97.65
PRK12370	553	invasion protein regulator; Provisional	97.64
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.64
KOG4442	729	consensus Clathrin coat binding protein/Huntingtin	97.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.64
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.61
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.61
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.59
PF13431	34	TPR_17: Tetratricopeptide repeat	97.56
KOG1080	1005	consensus Histone H3 (Lys4) methyltransferase comp	97.54
PRK10803	263	tol-pal system protein YbgF; Provisional	97.51
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.48
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.44
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.42
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.41
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.39
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.37
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.33
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.32
KOG1125	579	consensus TPR repeat-containing protein [General f	97.3
KOG1310	758	consensus WD40 repeat protein [General function pr	97.3
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.29
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.29
PRK10941	269	hypothetical protein; Provisional	97.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.21
PF13428	44	TPR_14: Tetratricopeptide repeat	97.18
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.18
PRK12370	553	invasion protein regulator; Provisional	97.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.13
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.12
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.12
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.1
PLN02789	320	farnesyltranstransferase	97.07
PRK15331	165	chaperone protein SicA; Provisional	97.07
PLN02789	320	farnesyltranstransferase	97.05
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.94
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.9
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.9
PF13512	142	TPR_18: Tetratricopeptide repeat	96.87
KOG4555	175	consensus TPR repeat-containing protein [Function	96.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.76
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.75
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.73
PF12688	120	TPR_5: Tetratrico peptide repeat	96.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.73
PRK10803	263	tol-pal system protein YbgF; Provisional	96.67
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.66
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.6
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.58
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.57
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.51
KOG1125	579	consensus TPR repeat-containing protein [General f	96.51
KOG1082	364	consensus Histone H3 (Lys9) methyltransferase SUV3	96.48
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.46
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.44
PF13428	44	TPR_14: Tetratricopeptide repeat	96.37
KOG2076	895	consensus RNA polymerase III transcription factor	96.35
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.33
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.3
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	96.28
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.26
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.23
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.21
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.21
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.16
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.16
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.15
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.14
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.13
KOG1126	638	consensus DNA-binding cell division cycle control	96.1
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.08
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.07
COG2912	269	Uncharacterized conserved protein [Function unknow	96.06
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.05
KOG1141	1262	consensus Predicted histone methyl transferase [Ch	96.04
PRK15331	165	chaperone protein SicA; Provisional	95.99
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.95
PRK11906	458	transcriptional regulator; Provisional	95.86
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.81
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.79
KOG1083	1306	consensus Putative transcription factor ASH1/LIN-5	95.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.76
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.74
KOG1126	638	consensus DNA-binding cell division cycle control	95.69
PF13512	142	TPR_18: Tetratricopeptide repeat	95.63
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.59
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.57
KOG1085	392	consensus Predicted methyltransferase (contains a	95.56
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	95.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.54
KOG2076	895	consensus RNA polymerase III transcription factor	95.52
KOG4234	271	consensus TPR repeat-containing protein [General f	95.5
PF12688	120	TPR_5: Tetratrico peptide repeat	95.46
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.42
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.4
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.37
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.32
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.1
PF13371	73	TPR_9: Tetratricopeptide repeat	95.04
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.0
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.99
KOG1337	472	consensus N-methyltransferase [General function pr	94.89
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	94.87
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	94.84
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	94.76
PRK11906	458	transcriptional regulator; Provisional	94.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.75
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.62
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	94.54
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.5
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.47
KOG1128	777	consensus Uncharacterized conserved protein, conta	94.45
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.4
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.19
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	94.17
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.03
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.98
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.78
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.65
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.65
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	93.6
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	93.55
PRK14574	822	hmsH outer membrane protein; Provisional	93.37
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	93.23
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.16
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.15
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	92.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.8
KOG2376	652	consensus Signal recognition particle, subunit Srp	92.71
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.63
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.52
KOG1129	478	consensus TPR repeat-containing protein [General f	92.42
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	92.02
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	92.0
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.69
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.65
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.47
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	91.46
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	91.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	91.36
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	91.35
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.14
PRK14574	822	hmsH outer membrane protein; Provisional	91.05
KOG1129	478	consensus TPR repeat-containing protein [General f	91.05
KOG3785	557	consensus Uncharacterized conserved protein [Funct	90.54
KOG1079	739	consensus Transcriptional repressor EZH1 [Transcri	90.36
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.28
KOG3364	149	consensus Membrane protein involved in organellar	90.16
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	89.99
KOG0495	913	consensus HAT repeat protein [RNA processing and m	89.83
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.69
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	89.61
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	89.55
KOG2003	840	consensus TPR repeat-containing protein [General f	89.33
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	89.22
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.15
KOG2003	840	consensus TPR repeat-containing protein [General f	89.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	88.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	88.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	88.28
KOG3060	289	consensus Uncharacterized conserved protein [Funct	87.55
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	86.0
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	85.82
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	85.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	85.67
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	85.49
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.31
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	84.67
KOG4507	886	consensus Uncharacterized conserved protein, conta	84.45
PRK14720	906	transcript cleavage factor/unknown domain fusion p	84.2
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	84.13
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	83.7
PF13431	34	TPR_17: Tetratricopeptide repeat	82.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	82.29
KOG1338	466	consensus Uncharacterized conserved protein [Funct	82.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	81.04
KOG2376	652	consensus Signal recognition particle, subunit Srp	80.56
KOG4814	872	consensus Uncharacterized conserved protein [Funct	80.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	80.23
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.11

>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]

Probab=99.88  E-value=5.3e-21  Score=213.61  Aligned_cols=234  Identities=20%  Similarity=0.251  Sum_probs=154.6

Q ss_pred             eeEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCC-ceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCC
Q 048211          371 RVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGY-PLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSE  449 (665)
Q Consensus       371 ~~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~Ge-eI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~  449 (665)
                      ..|.|+||..+++||||.||+...|++....+++...+.+++ +|+++|++.  .+++..||..|+..|+|.|.|+||.+
T Consensus       197 ~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~--~~~~~~r~~~l~~~~~f~c~c~rc~d  274 (482)
T KOG2084|consen  197 FLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDP--LLSTASRQKQLRQSKLFSCQCPRCLD  274 (482)
T ss_pred             cceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeeccc--ccCHHHHHHHHhhccceeeecCCCCC
Confidence            589999999999999999999999999999999999998887 999999986  69999999999999999999999999


Q ss_pred             CccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCCchhHHHHHHHHhhhcCCccccCC
Q 048211          450 LNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGP  529 (665)
Q Consensus       450 ~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  529 (665)
                      +++.+++.++++|.+.+|.+.+.+.....                                               ....
T Consensus       275 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-----------------------------------------------~~~~  307 (482)
T KOG2084|consen  275 PTELGTFLSSLRCENCTCGGLLGTSFLDK-----------------------------------------------EDLQ  307 (482)
T ss_pred             CCccccchhhhhhcCCCCCCccCCCcccc-----------------------------------------------cCCC
Confidence            99989999999999888876654422100                                               0123


Q ss_pred             ccccccCccccchhhhhhHHHHHH-------------HHHHHHHHH-------------hHHhhHHHHHH---HHHHHHH
Q 048211          530 GYCLKCGSDRDLESSYATVDEAWI-------------YIRRLQDAI-------------ISKEISRAVLL---DASRFLG  580 (665)
Q Consensus       530 ~~C~~C~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-------------~~~~~~~~~~~---~~~~~l~  580 (665)
                      |.|..|........+.........             .+..-+..+             ....+......   .......
T Consensus       308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~  387 (482)
T KOG2084|consen  308 WPCTECALVRLKAYVVESREELQNELLDAFSDLLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAE  387 (482)
T ss_pred             ccccccccchhHHHHHHHHHHHHhhccccCChhhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhH
Confidence            555555433322111111111000             000000000             00000000000   0000000


Q ss_pred             hHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhH
Q 048211          581 LLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHL  653 (665)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~  653 (665)
                      .....-..+...+..++..+++..++..++..+.++....+++....+ ........++...++.++...-...
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (482)
T KOG2084|consen  388 LERLLNLFECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEE  461 (482)
T ss_pred             HHHHHHhhhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHH
Confidence            001111111355677889999999999999999999999887766666 7777777777777777776654433

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=99.60  E-value=4e-15  Score=139.87  Aligned_cols=50  Identities=36%  Similarity=0.613  Sum_probs=45.4

Q ss_pred             ceeEEEeccccccccCCCcCCcEEEEe----CCEEEEEEeecCCCCCceeeecC
Q 048211          370 VRVGLAIYTAGSLFNHSCLPNIHAYFL----SRTLMIRTTEFVPSGYPLELSYG  419 (665)
Q Consensus       370 ~~~g~glyp~~Sl~NHSC~PN~~~~f~----g~~~~vrA~r~I~~GeeI~isY~  419 (665)
                      ...+.+|||.++|+||||.||+.+.|.    ++.++|+|.|||++|||||||||
T Consensus       109 ~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG  162 (162)
T PF00856_consen  109 DRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG  162 (162)
T ss_dssp             EEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred             cccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence            457899999999999999999999998    78999999999999999999997

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.5e-13  Score=136.27  Aligned_cols=85  Identities=25%  Similarity=0.347  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      .++.|.|||+||.+||.|+.|++||+.||.+||.|.|+|-|+|.+|+.+|+|++|++.|++||+++|+|+..++-++.++
T Consensus       114 nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  114 NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAE  193 (304)
T ss_pred             cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999996666555555


Q ss_pred             HHHhc
Q 048211           91 IILDQ   95 (665)
Q Consensus        91 ~~~~~   95 (665)
                      ..+.+
T Consensus       194 ~~l~e  198 (304)
T KOG0553|consen  194 QKLNE  198 (304)
T ss_pred             HHhcC
Confidence            55543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=1.8e-12  Score=120.52  Aligned_cols=89  Identities=24%  Similarity=0.392  Sum_probs=79.2

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      ..++.+.+|.|||+|+++++.|+.|+.||.+||+++|.|.||+.|||.+|.++..|++|++||.+.++++|+....++..
T Consensus       129 ~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i  208 (271)
T KOG4234|consen  129 STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAI  208 (271)
T ss_pred             cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            55789999999999999999999999999999999999999999999999999999999999999999999987555555


Q ss_pred             HHHHHHHhc
Q 048211           87 SELKIILDQ   95 (665)
Q Consensus        87 ~~l~~~~~~   95 (665)
                      .++..++.+
T Consensus       209 ~rl~~~i~e  217 (271)
T KOG4234|consen  209 ARLPPKINE  217 (271)
T ss_pred             HhcCHHHHH
Confidence            555444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.3e-11  Score=124.55  Aligned_cols=76  Identities=28%  Similarity=0.360  Sum_probs=72.1

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      .++-.+|.|.|+||+++++|.+|+..|++||+++|+|+||+||||+|+..+|+|+.|+.+|+++++++|+|.++..
T Consensus       254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~  329 (397)
T KOG0543|consen  254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA  329 (397)
T ss_pred             HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4677899999999999999999999999999999999999999999999999999999999999999999986543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.1e-10  Score=119.84  Aligned_cols=93  Identities=31%  Similarity=0.450  Sum_probs=81.6

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            1 MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         1 ~~~~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      |..||.+.+.++.+|.|||+++.++|+..+|+.||+.|+++||.|.|||.|||+|+..+++|++|++||++|.+.+.+..
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e  355 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE  355 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            46788888999999999999999999999999999999999999999999999999999999999999999999987743


Q ss_pred             HHHHHHHHHHHHHh
Q 048211           81 GKKQIESELKIILD   94 (665)
Q Consensus        81 ~~~~~~~~l~~~~~   94 (665)
                       ..+.+++++..++
T Consensus       356 -~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  356 -IRRTLREAQLALK  368 (486)
T ss_pred             -hHHHHHHHHHHHH
Confidence             3344445544444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.01  E-value=1.2e-09  Score=87.36  Aligned_cols=67  Identities=19%  Similarity=0.347  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-NHDDAVHDLTIAKNRES   77 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l~p   77 (665)
                      .|..|.++|.+++++|+|++|+..+++|++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46789999999999999999999999999999999999999999999999 79999999999999988

...

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=9.7e-10  Score=116.63  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      +.++|.||+++|..+|+|++|+.|..+.++++|+++|+|.|+|.++..||+|++|+..|.++|+.+|+|......+.+..
T Consensus        35 nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   35 NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            77889999999999999999999999999999999999999999999999999999999999999999987665555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=2.4e-09  Score=113.72  Aligned_cols=80  Identities=25%  Similarity=0.320  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL   89 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l   89 (665)
                      ..+.+|.|||+||.+++.+..|+.||++++++||++.|+|+|+|.|+..|.+|+.|.+.|+++++++|++.......++.
T Consensus       390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc  469 (539)
T KOG0548|consen  390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC  469 (539)
T ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999987554433333

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=98.92  E-value=6.6e-10  Score=98.48  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=39.5

Q ss_pred             EeccccccccCCCcCCcEEEEeC--C--EEEEEEeecCCCCCceeeec
Q 048211          375 AIYTAGSLFNHSCLPNIHAYFLS--R--TLMIRTTEFVPSGYPLELSY  418 (665)
Q Consensus       375 glyp~~Sl~NHSC~PN~~~~f~g--~--~~~vrA~r~I~~GeeI~isY  418 (665)
                      .++|.++++||||.||+.+.+..  +  .+.++|+|+|++|||||++|
T Consensus        69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence            38899999999999999887653  2  69999999999999999999

Putative methyl transferase, based on outlier plant homologues

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=6.7e-09  Score=108.79  Aligned_cols=64  Identities=28%  Similarity=0.510  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      +.+|.|||+||..+|+|+..++||.+||++||+|+|||+|||.++..+|++.+|+.|+....-+
T Consensus       149 piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~  212 (606)
T KOG0547|consen  149 PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL  212 (606)
T ss_pred             chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999876544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.83  E-value=5e-09  Score=105.13  Aligned_cols=84  Identities=23%  Similarity=0.249  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL   89 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l   89 (665)
                      .++..|.|||.+|+++++|..|..||+.|+.+|..|.|||-|||.+...||...+|.+|++.+|+++|++...++...++
T Consensus       129 ~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  129 HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            47788999999999999999999999999999999999999999999999999999999999999999987555555555


Q ss_pred             HHHH
Q 048211           90 KIIL   93 (665)
Q Consensus        90 ~~~~   93 (665)
                      ..++
T Consensus       209 ~Sl~  212 (536)
T KOG4648|consen  209 NSLR  212 (536)
T ss_pred             cchH
Confidence            4443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.2e-08  Score=102.42  Aligned_cols=77  Identities=27%  Similarity=0.337  Sum_probs=69.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .-.|+.+++.+|+|||+|.+.+|+|..||.||.+|++++|.+.|||+|=|+|++.|.++.+|+...+..+.++-.++
T Consensus       111 kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  111 KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999888777666654443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.74  E-value=7.2e-08  Score=89.35  Aligned_cols=81  Identities=12%  Similarity=0.027  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      ...+|.++|.++.++|+|++|+..+.+|++++|+++.+|+++|.++..+|++++|+..|++++++.|++......+..++
T Consensus        57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            45667778888888888888888888888888888888888888888888888888888888888887755444444443


Q ss_pred             H
Q 048211           91 I   91 (665)
Q Consensus        91 ~   91 (665)
                      .
T Consensus       137 ~  137 (144)
T PRK15359        137 I  137 (144)
T ss_pred             H
Confidence            3

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.66  E-value=1.6e-07  Score=100.38  Aligned_cols=83  Identities=27%  Similarity=0.340  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      .+.+|.|||.+|+++|+|++|+.++++|++++|+++.+|+++|.++..+|+|++|+..|+++++++|++.........++
T Consensus        35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999987666665555


Q ss_pred             HHH
Q 048211           91 IIL   93 (665)
Q Consensus        91 ~~~   93 (665)
                      ..+
T Consensus       115 ~kl  117 (356)
T PLN03088        115 EKI  117 (356)
T ss_pred             HHH
Confidence            544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.61  E-value=2.2e-08  Score=105.78  Aligned_cols=85  Identities=26%  Similarity=0.359  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      -|..|.|||+++++.++|..|+.|+.+|++++|.+.|+|+|+|.+.+++++|.+|+.+|++...+.|+.....+...+.+
T Consensus        37 ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   37 CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999987766666766


Q ss_pred             HHHhc
Q 048211           91 IILDQ   95 (665)
Q Consensus        91 ~~~~~   95 (665)
                      .+..+
T Consensus       117 ~~vs~  121 (476)
T KOG0376|consen  117 KIVSE  121 (476)
T ss_pred             HHHHH
Confidence            66553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.60  E-value=1.3e-07  Score=74.52  Aligned_cols=65  Identities=18%  Similarity=0.246  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .++|..+++.|+|++|+..++.+++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36889999999999999999999999999999999999999999999999999999999999863

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.52  E-value=5.7e-07  Score=72.61  Aligned_cols=68  Identities=18%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      ..+|++.++|++|++.++++++++|+.+.+|+.+|.++..+|+|.+|+++|+++++..|++.....+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999987665444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.49  E-value=1e-07  Score=95.99  Aligned_cols=83  Identities=22%  Similarity=0.228  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL   89 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l   89 (665)
                      -+-.+++.||.+|+.+|+-..|+.|++++|++.|++.-|...||.+++++|++++|..||+.++.-+|++....+.+.++
T Consensus        70 ~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl  149 (504)
T KOG0624|consen   70 NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL  149 (504)
T ss_pred             hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999987666666555


Q ss_pred             HHH
Q 048211           90 KII   92 (665)
Q Consensus        90 ~~~   92 (665)
                      ..+
T Consensus       150 ~~~  152 (504)
T KOG0624|consen  150 ALI  152 (504)
T ss_pred             HhH
Confidence            444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.40  E-value=2.1e-06  Score=79.00  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL   89 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l   89 (665)
                      ..+..|.|.|+++-.+|+|++|+.-+.+|+.++|++|.++++.|.|+..+|+.+.|.+.|+.++.+...++.-..++++.
T Consensus        67 ~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A  146 (157)
T PRK15363         67 WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA  146 (157)
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence            36778889999999999999999999999999999999999999999999999999999998888764444444555555


Q ss_pred             HHHHh
Q 048211           90 KIILD   94 (665)
Q Consensus        90 ~~~~~   94 (665)
                      +..+.
T Consensus       147 ~~~L~  151 (157)
T PRK15363        147 EKMLQ  151 (157)
T ss_pred             HHHHH
Confidence            55543

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.37  E-value=1.1e-07  Score=65.77  Aligned_cols=37  Identities=24%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             ccccccccccCCcCCCCCCCccccchHHHHhhhccccccCC
Q 048211          165 CHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCP  205 (665)
Q Consensus       165 C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC  205 (665)
                      |.+|+++   ...+|++|+.++|||++||+.+| ..|+.+|
T Consensus         1 C~~C~~~---~~~~C~~C~~~~YCs~~Cq~~~w-~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKP---ALKRCSRCKSVYYCSEECQRADW-PYHKFEC   37 (37)
T ss_dssp             -TTTSSC---SSEEETTTSSSEESSHHHHHHHH-HHHCCTH
T ss_pred             CcCCCCC---cCCcCCCCCCEEecCHHHHHHHH-HHHhhhC
Confidence            7788884   34599999999999999999999 5677765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.37  E-value=2.8e-06  Score=77.40  Aligned_cols=69  Identities=13%  Similarity=0.116  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..++.++|.++++.|++++|++.++++++.+|+++.+|+++|.++..+|++++|+..|+++++++|++.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~   85 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP   85 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            355667777777777777777777777777777777777777777777777777777777777777654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.33  E-value=2.9e-06  Score=88.63  Aligned_cols=78  Identities=17%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.+++..+..|.+||.+|..+|++++|+.++++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus        56 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  133 (296)
T PRK11189         56 RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  133 (296)
T ss_pred             ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            344556678899999999999999999999999999999999999999999999999999999999999999999864

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.5e-06  Score=82.50  Aligned_cols=70  Identities=29%  Similarity=0.472  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..-++.|-++|++..|+|-++++.|..+|...|++.|||||||++....=+..+|.+||.++++++|+..
T Consensus       229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            5668999999999999999999999999999999999999999999999999999999999999999865

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.29  E-value=3e-06  Score=90.17  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=64.5

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKA---WYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka---~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .+-.+.+++|++.+|+++|+|++|+..+++||+++|+++.+   ||++|.||..+|++++|+++|++|+++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34588999999999999999999999999999999999865   999999999999999999999999997

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.26  E-value=3.7e-06  Score=66.75  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=59.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211           22 LQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus        22 ~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      +++.|+|++|++-++++++.+|+++.+++.+|.++...|++++|...+++++..+|++.....+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            467899999999999999999999999999999999999999999999999999999875554443

...

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]

Probab=98.24  E-value=8.3e-07  Score=89.71  Aligned_cols=66  Identities=21%  Similarity=0.464  Sum_probs=53.6

Q ss_pred             Eecc-ccccccCCCcCCcEEEEeC-CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCCCcc
Q 048211          375 AIYT-AGSLFNHSCLPNIHAYFLS-RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNT  452 (665)
Q Consensus       375 glyp-~~Sl~NHSC~PN~~~~f~g-~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~~  452 (665)
                      -||. -++++||+|.|||..+-.| .++.|+++|||++|||||.-|+..|  .+          -..-.|.|.-|....+
T Consensus       191 qLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~f--FG----------~~N~~CeC~TCER~g~  258 (453)
T KOG2589|consen  191 QLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGF--FG----------ENNEECECVTCERRGT  258 (453)
T ss_pred             hheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccc--cC----------CCCceeEEeecccccc
Confidence            4555 4569999999999887777 7999999999999999999999865  22          2345799999986544

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.21  E-value=5.4e-06  Score=86.60  Aligned_cols=70  Identities=16%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.+|.++|.+|..+|+|++|+..+++|++++|+++.+|+++|.++...|++++|+++|+++++++|++.
T Consensus        97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999986

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.20  E-value=1.1e-05  Score=74.79  Aligned_cols=68  Identities=12%  Similarity=-0.043  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.++|.+++++|+|++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|++..
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~   93 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE   93 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            47789999999999999999999999999999999999999999999999999999999999998864

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.14  E-value=3.4e-06  Score=85.19  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=81.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      +|....+.-..+.-.+.||..-+++.+||+.|..+|+.+|+++.+|..||.+|+.-..|++|+.||++|.+++++|..++
T Consensus       299 ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r  378 (504)
T KOG0624|consen  299 EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR  378 (504)
T ss_pred             CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence            33333333334444567888889999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhcccccc
Q 048211           84 QIESELKIILDQSNRTS  100 (665)
Q Consensus        84 ~~~~~l~~~~~~~~~~~  100 (665)
                      +.+...+++.+|..+..
T Consensus       379 eGle~Akrlkkqs~kRD  395 (504)
T KOG0624|consen  379 EGLERAKRLKKQSGKRD  395 (504)
T ss_pred             HHHHHHHHHHHHhccch
Confidence            88888888888765543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.12  E-value=1.6e-05  Score=76.80  Aligned_cols=76  Identities=20%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+....+.+...+|..|++.|++..|...+++||+.||+++.+|.-+|..|..+|+.+.|.+.|++|++++|++..
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd  104 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD  104 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence            4567789999999999999999999999999999999999999999999999999999999999999999999874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.12  E-value=6.3e-06  Score=67.48  Aligned_cols=67  Identities=22%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC-------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~-------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      +..+.+|.|.|.+|..+|+|++|+..+++|+++-       |..+.+++++|.++..+|++++|++.+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3578899999999999999999999999999772       223678999999999999999999999999875

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.07  E-value=1.1e-05  Score=93.10  Aligned_cols=68  Identities=26%  Similarity=0.314  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +..|.|+|.+|+++|+|++|++++++||+++|+++++|+|+|.++..+|+|++|+.+|..++.+++.+
T Consensus       160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~  227 (615)
T TIGR00990       160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR  227 (615)
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            45799999999999999999999999999999999999999999999999999999998888776654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=5.6e-06  Score=87.36  Aligned_cols=66  Identities=23%  Similarity=0.440  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      |..||++|...++-++-..|+++|..+||.|+..||.||+.+.-+++|++|+.||+++.+++|++.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999975

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.98  E-value=6.2e-05  Score=68.45  Aligned_cols=84  Identities=12%  Similarity=0.203  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      ...++.++|.+++++|++++|+..++++++.+|.++..++.+|.++..+|++++|+..|+++++++|++.....+.+++.
T Consensus        50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  129 (135)
T TIGR02552        50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE  129 (135)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999987666666666


Q ss_pred             HHHh
Q 048211           91 IILD   94 (665)
Q Consensus        91 ~~~~   94 (665)
                      ..++
T Consensus       130 ~~~~  133 (135)
T TIGR02552       130 AMLE  133 (135)
T ss_pred             HHHh
Confidence            5543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=1.2e-05  Score=77.65  Aligned_cols=67  Identities=33%  Similarity=0.383  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ++.+..|.|||.||+++++|+.+.+||.+|++++|+-+|+.|-.|+++.....|.+|+..+++|.++
T Consensus        41 P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   41 PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999664

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.83  E-value=5.2e-05  Score=76.11  Aligned_cols=70  Identities=21%  Similarity=0.268  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +|.-+-+-+.-+.+-++|++|+.-+++||+++|.++-.|.+||.+|.+||.|+.|++|.+.|++++|...
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys  149 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS  149 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence            5556667788889999999999999999999999999999999999999999999999999999999875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.82  E-value=3.2e-05  Score=64.31  Aligned_cols=61  Identities=16%  Similarity=0.221  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA   72 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a   72 (665)
                      ....+.+.|.||+++|+|++|+..+++ ++.+|.++...+-.|+|+..+|+|++|++.|+++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            556777799999999999999999998 8888888888888899999999999999988864

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.81  E-value=0.00012  Score=67.45  Aligned_cols=73  Identities=15%  Similarity=0.111  Sum_probs=66.5

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ++.+..+|. .|.-++..|++++|..-+.....+||.++..|+.+|.|+..+|+|++|++.|.+|..++|++..
T Consensus        32 ~~~l~~lY~-~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         32 TQPLNTLYR-YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            445555555 8889999999999999999999999999999999999999999999999999999999998754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.80  E-value=9e-05  Score=65.13  Aligned_cols=67  Identities=31%  Similarity=0.369  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRES   77 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p   77 (665)
                      .+.+|+|||.+|--+|+-++|++|.++|+++..+.    -.+|..||..|..+|+.+.|..||+.+-++..
T Consensus        76 raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen   76 RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            56667777777777777777777777777774332    24566777777777777777777777666643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.79  E-value=0.00018  Score=70.41  Aligned_cols=70  Identities=10%  Similarity=0.006  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVN-VSLEN--HDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~-~~l~~--~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.+|.+.|.+|..+|++++|+.-+++|++++|+++.++...|.++ ...|+  +++|.+.++++++++|++.
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV  144 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence            3445666666666666666666666666666666666666666654 45555  3666666666666666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.78  E-value=0.00016  Score=63.63  Aligned_cols=67  Identities=13%  Similarity=0.188  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ..+.+.+..+++.|+|++|++.+..+++.+|++   +.+++.+|.++...|++++|+..|+.++...|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            457888899999999999999999999888775   5788889999999999999999999998888775

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.73  E-value=0.00032  Score=57.54  Aligned_cols=67  Identities=21%  Similarity=0.264  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ++.++|.+++..|++++|+..+..+++..|..+.+++.+|.++...+++++|++.|+.++.+.|.+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            5789999999999999999999999999999999999999999999999999999999999988875

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.72  E-value=2.1e-05  Score=79.98  Aligned_cols=69  Identities=36%  Similarity=0.514  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      -++.+|.+|+.++++++.+.+|++||+.|+++||+-++.|--||.+...+|++++|..|+..+++++-+
T Consensus       146 ~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  146 PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            489999999999999999999999999999999999999999999999999999999999999998655

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.68  E-value=0.00031  Score=75.32  Aligned_cols=67  Identities=24%  Similarity=0.294  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +...|..++..|+|++|++.+++||+++|+++.+|+.+|.++..+|+|++|+.++++++.++|++..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~   71 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK   71 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence            5667899999999999999999999999999999999999999999999999999999999998764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=9.1e-05  Score=49.94  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ++|+++|.++..+|++++|++.|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            44555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2940 Proteins containing SET domain [General function prediction only]

Probab=97.65  E-value=2.5e-05  Score=87.00  Aligned_cols=70  Identities=29%  Similarity=0.508  Sum_probs=56.5

Q ss_pred             cccccccCCCcCCcEEEEeCC----EEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCC
Q 048211          378 TAGSLFNHSCLPNIHAYFLSR----TLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSE  449 (665)
Q Consensus       378 p~~Sl~NHSC~PN~~~~f~g~----~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~  449 (665)
                      ....++||||.||+..+..+.    .+.++|++||++||||++.|....  +....+...+...+...|.|.+|+.
T Consensus       404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  477 (480)
T COG2940         404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSL--EDNRELKKLLEKRWGCACGEDRCSH  477 (480)
T ss_pred             cccceeecCCCCCcceecccccccceeeecccccchhhhhhcccccccc--ccchhhhhhhhhhhccccCCCccCC
Confidence            456699999999998876543    799999999999999999999753  3333346677778899999999974

>PRK12370 invasion protein regulator; Provisional

Probab=97.64  E-value=0.00018  Score=82.00  Aligned_cols=70  Identities=10%  Similarity=-0.028  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.++|.++..+|++++|+..+++|++++|+++.+|+.+|.++..+|++++|+..++++++++|.+.
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            4567888899999999999999999999999999999999999999999999999999999999999865

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.64  E-value=8.9e-05  Score=80.42  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.++.|.|..|-++|++++|+.-+..||.++|.++++|.++|..|..+|+..+|+.+|.+|+.++|..
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~  455 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF  455 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence            455566666666666666666666666666666666666666666666666666666666666666553

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=3.8e-05  Score=84.41  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             cccccCCCcCCcE---EEEeC-CEEEEEEeecCCCCCceeeecCC
Q 048211          380 GSLFNHSCLPNIH---AYFLS-RTLMIRTTEFVPSGYPLELSYGP  420 (665)
Q Consensus       380 ~Sl~NHSC~PN~~---~~f~g-~~~~vrA~r~I~~GeeI~isY~~  420 (665)
                      +=++||||+|||.   |+..| -+|=+.|.++|++|||||+-|.-
T Consensus       194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf  238 (729)
T KOG4442|consen  194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF  238 (729)
T ss_pred             HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence            3488999999994   44444 36778999999999999999974

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.64  E-value=0.00029  Score=81.41  Aligned_cols=71  Identities=20%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..+.+|.+++.+++.+|++++|+.+++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  399 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP  399 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.61  E-value=0.0001  Score=49.69  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY   45 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~   45 (665)
                      |.+|.|+|.+|+.+|+|++|+..+++||+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            5689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.61  E-value=0.00049  Score=60.55  Aligned_cols=76  Identities=12%  Similarity=0.070  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~   85 (665)
                      ..+.++.++|.++++.|+|+.|+..+..+++.+|++   +.+++..|.++..+|++++|+..++.+++..|++......
T Consensus        37 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        37 YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            346788999999999999999999999999998875   6889999999999999999999999999999998754333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.59  E-value=0.0007  Score=64.59  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=66.8

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..-.+.++.++|..+...|++++|+..+++|++.+|+.   +.+++.+|.++..+|++++|+..|++++++.|++..
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            34578899999999999999999999999999987653   578999999999999999999999999999998753

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.56  E-value=9.5e-05  Score=49.97  Aligned_cols=33  Identities=15%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048211           35 CNRAVQICPSYAKAWYRRGKVNVSLENHDDAVH   67 (665)
Q Consensus        35 ~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~   67 (665)
                      +++||+++|+++.+|+++|.++...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            679999999999999999999999999999863

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]

Probab=97.54  E-value=5.7e-05  Score=88.46  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=35.0

Q ss_pred             ccccccCCCcCCcEE---EEeC-CEEEEEEeecCCCCCceeeecC
Q 048211          379 AGSLFNHSCLPNIHA---YFLS-RTLMIRTTEFVPSGYPLELSYG  419 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~---~f~g-~~~~vrA~r~I~~GeeI~isY~  419 (665)
                      .+.+|||||.|||..   +.+| .+|+|.|.|+|.+|||||..|-
T Consensus       939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk  983 (1005)
T KOG1080|consen  939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK  983 (1005)
T ss_pred             hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence            578999999999933   3345 4799999999999999999995

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.51  E-value=0.00073  Score=68.92  Aligned_cols=76  Identities=18%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           11 VATLYVNRASVL-QKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        11 ~a~~~~NRa~~~-~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      .....++.|..+ ++.|+|++|+..+...++..|+.   +.++|.+|.+++..|+|++|+..|+++++..|++....+..
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            445567777776 56788899988898888888876   57888889999999999999988888888888765444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.48  E-value=0.0012  Score=64.77  Aligned_cols=75  Identities=17%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +....+.++.+++.+|+..|++++|++.++++++.+|+++.++..+|.++..+|++++|++.|++++++.|.+..
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  100 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD  100 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            344578899999999999999999999999999999999999999999999999999999999999999988753

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.47  E-value=0.00058  Score=81.93  Aligned_cols=69  Identities=17%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +.+|.|+|.++.++|++++|+..+.++++++|+++.++..+|.++..+|++++|++.|+++++++|++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            345666666666666666666666666666666666666666666666666666666666666666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.44  E-value=0.00052  Score=56.27  Aligned_cols=66  Identities=26%  Similarity=0.354  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .++.++|.++...+++++|+..++.+++..|..+.+++.+|.++..+|++++|...+..+++..|+
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            678999999999999999999999999999999999999999999999999999999999888763

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.42  E-value=0.00098  Score=65.19  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211           11 VATLYVNRASVL-QKRDH--LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus        11 ~a~~~~NRa~~~-~~l~~--~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      .+.++.+.|.++ +..|+  +++|.+-++++++.+|+++.+++.+|.++..+|+|++|+..++++++++|.+..+..+.+
T Consensus       106 ~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        106 NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            455677777764 56666  478888888888888888888888888888888888888888888887776655444444


Q ss_pred             HH
Q 048211           88 EL   89 (665)
Q Consensus        88 ~l   89 (665)
                      .+
T Consensus       186 ~i  187 (198)
T PRK10370        186 SI  187 (198)
T ss_pred             HH
Confidence            33

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.41  E-value=0.0008  Score=64.19  Aligned_cols=69  Identities=12%  Similarity=0.058  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN--------------HDDAVHDLTIAKNRE   76 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~--------------~~~A~~~~~~al~l~   76 (665)
                      .+.++.|+|.++.++|+|++|+..+.+|++.+|+++.++..+|.++..+|+              +++|.+.+++++.++
T Consensus        71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603         71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            467899999999999999999999999999999999999999999999888              566666777777777


Q ss_pred             CCh
Q 048211           77 SSL   79 (665)
Q Consensus        77 p~~   79 (665)
                      |++
T Consensus       151 p~~  153 (172)
T PRK02603        151 PNN  153 (172)
T ss_pred             chh
Confidence            776

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.40  E-value=0.00051  Score=74.76  Aligned_cols=70  Identities=20%  Similarity=0.224  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.+.+|.+.+|..+|.+++|..-+.+||+..|..+.+..++|..|...|++++|+..|+.|+++.|...
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA  422 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA  422 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence            5778899999999999999999999999999999999999999999999999999999999999999753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.39  E-value=0.00034  Score=46.93  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           46 AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        46 ~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +++|+.+|.+++.+|+|++|++.|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3566666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.37  E-value=0.0018  Score=61.54  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=66.2

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ...+.+|.+.+.++..+|+|++|+..+.+|+.+.|+   .+.+|+++|.++..+|++++|++.|+++++++|....
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~  107 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ  107 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            447889999999999999999999999999999766   3568999999999999999999999999999988653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.33  E-value=0.0013  Score=62.47  Aligned_cols=71  Identities=10%  Similarity=-0.065  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHH-------HHHHHhc
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNV-------SLENHDDAVHD-------LTIAKNR   75 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~-------~l~~~~~A~~~-------~~~al~l   75 (665)
                      ..+.++.|.|.+|.++|++++|+..+.+|++++|.++.++..+|.++.       .+|++++|+..       |++++..
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~  149 (168)
T CHL00033         70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL  149 (168)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999999999999888888888       78887755544       4456667


Q ss_pred             CCChH
Q 048211           76 ESSLA   80 (665)
Q Consensus        76 ~p~~~   80 (665)
                      +|++.
T Consensus       150 ~p~~~  154 (168)
T CHL00033        150 APGNY  154 (168)
T ss_pred             CcccH
Confidence            77654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.32  E-value=0.0011  Score=66.37  Aligned_cols=75  Identities=8%  Similarity=-0.044  Sum_probs=68.9

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+..+..+.+++..+++.|+|++|+..++++++.+|+.+   ++++.+|.++..+|++++|+..|+++++..|++...
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            356788999999999999999999999999999999865   789999999999999999999999999999987643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.00025  Score=76.82  Aligned_cols=68  Identities=24%  Similarity=0.307  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ...+|+..++.+..-.+.++|+..|.+||++.|+|..++|++|.+++.+|.|++|+..|-.|+.+.+.
T Consensus       463 d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  463 DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            45566666777777777777777777777777777777777777777777777777777777776554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.30  E-value=0.0004  Score=74.17  Aligned_cols=74  Identities=26%  Similarity=0.243  Sum_probs=66.5

Q ss_pred             chHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211            9 NLVATLYVNRASVLQKR---DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l---~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      +....+|.|||+++++.   |+.-.|++||..|+++||.+.||++|++.|+..++++.+|+++...+....|.+.++
T Consensus       405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~  481 (758)
T KOG1310|consen  405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVAR  481 (758)
T ss_pred             cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence            45778999999999996   578899999999999999999999999999999999999999988887788876543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.29  E-value=0.00089  Score=77.33  Aligned_cols=71  Identities=6%  Similarity=-0.035  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ....++.|++.++.+++++++|+..+++++..+|+++.+++.+|.++..+|+|++|++.|++++.-+|++.
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~  188 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE  188 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH
Confidence            35677888888888888888888888888888888888888888888888888888888888888777653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0011  Score=71.70  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      -.+.|.|-+|.+++.|++||..+++||.+.|.++..+.-.|-++..+|+++.|++.|.++|-++|+|..+.++++
T Consensus       456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            458999999999999999999999999999999999999999999999999999999999999999986666654

>PRK10941 hypothetical protein; Provisional

Probab=97.29  E-value=0.0028  Score=64.63  Aligned_cols=86  Identities=16%  Similarity=0.168  Sum_probs=78.3

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      ..++.....|.=.+|.+.++|+.|++..++.+.++|+.+.-+--||.+|.+||.+..|..|++..++..|++....-++.
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            46789999999999999999999999999999999999988888999999999999999999999999999887766666


Q ss_pred             HHHHHH
Q 048211           88 ELKIIL   93 (665)
Q Consensus        88 ~l~~~~   93 (665)
                      .++.+.
T Consensus       257 ql~~l~  262 (269)
T PRK10941        257 QIHSIE  262 (269)
T ss_pred             HHHHHh
Confidence            666654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.21  E-value=0.0035  Score=61.44  Aligned_cols=66  Identities=15%  Similarity=0.049  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ..+.+++.++..+|++++|+..+.++++.+|+++.+++.+|.++..+|++++|+..+++++++.|.
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            345555555555666666666666666555555555555566666666666666555555555444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.18  E-value=0.00089  Score=48.12  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGK   54 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~   54 (665)
                      .++..+|.+|.++|++++|++-++++++.+|+++.+|..+|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            356778888888888888888888888888888888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.18  E-value=0.0023  Score=64.11  Aligned_cols=77  Identities=16%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCC
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAK---AWYRRGKVNVSL--------ENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k---a~~r~a~~~~~l--------~~~~~A~~~~~~al~l~p~   78 (665)
                      ....++.++|.+|+++|++++|+..++++++..|+++.   +++.+|.++..+        |++++|++.|+++++.+|+
T Consensus        68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302        68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            44567899999999999999999999999999998765   799999999987        8899999999999999999


Q ss_pred             hHHHHHHH
Q 048211           79 LAGKKQIE   86 (665)
Q Consensus        79 ~~~~~~~~   86 (665)
                      +.......
T Consensus       148 ~~~~~~a~  155 (235)
T TIGR03302       148 SEYAPDAK  155 (235)
T ss_pred             ChhHHHHH
Confidence            86544433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK12370 invasion protein regulator; Provisional

Probab=97.16  E-value=0.0017  Score=73.92  Aligned_cols=72  Identities=11%  Similarity=-0.019  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKR---------DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l---------~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.+|.+.|.+|..+         +++++|+..+++|++++|+++.+|..+|.++...|++++|+..|+++++++|++..
T Consensus       294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  373 (553)
T PRK12370        294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD  373 (553)
T ss_pred             cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            466788888877644         34899999999999999999999999999999999999999999999999999874


Q ss_pred             H
Q 048211           82 K   82 (665)
Q Consensus        82 ~   82 (665)
                      .
T Consensus       374 a  374 (553)
T PRK12370        374 I  374 (553)
T ss_pred             H
Confidence            3

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.13  E-value=0.0011  Score=44.29  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY   45 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~   45 (665)
                      |.++.++|.+|+++|+|++|++.+++|++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.12  E-value=0.0021  Score=60.29  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHH
Q 048211           10 LVATLYVNRASVLQKRD----------HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-----------HDDAVHD   68 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~----------~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-----------~~~A~~~   68 (665)
                      ..+..+.|=+.+++.+.          -+++|+.-++.||.+||++.+|++..|.++..++.           |+.|.+.
T Consensus        23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~  102 (186)
T PF06552_consen   23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEY  102 (186)
T ss_dssp             T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence            34667778888877763          46889999999999999999999999999988876           6788889


Q ss_pred             HHHHHhcCCChHHHHHH
Q 048211           69 LTIAKNRESSLAGKKQI   85 (665)
Q Consensus        69 ~~~al~l~p~~~~~~~~   85 (665)
                      |++|...+|+|+.....
T Consensus       103 FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen  103 FQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             HHHHHHH-TT-HHHHHH
T ss_pred             HHHHHhcCCCcHHHHHH
Confidence            99999999999854433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.12  E-value=0.0051  Score=68.02  Aligned_cols=87  Identities=18%  Similarity=0.277  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcch
Q 048211          571 VLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETM  649 (665)
Q Consensus       571 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~  649 (665)
                      .+..+.+.++++..+.+-| ...+.+.+..||+.||.+|..+..||.++...|+..+| .++.+|+.|....+|..||.+
T Consensus       246 ~~a~~y~~~~k~~eAv~ly-~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v  324 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLY-EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV  324 (508)
T ss_pred             HHHHHHHHhccHHHHHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence            4566777888888888755 45588999999999999999999999999999999999 999999999999999999999


Q ss_pred             hhhHHHHHH
Q 048211          650 FPHLLFLQR  658 (665)
Q Consensus       650 ~~~~~~l~~  658 (665)
                      ...+.++--
T Consensus       325 ~~~l~~~~~  333 (508)
T KOG1840|consen  325 AAQLSELAA  333 (508)
T ss_pred             HHHHHHHHH
Confidence            877766543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.10  E-value=0.0031  Score=75.77  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      .+.++.|.|.++..+|++++|+..+++|++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+..
T Consensus       642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~  715 (987)
T PRK09782        642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP  715 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence            44678888888888888888888888888888888888888888888888888888888888888888765433

>PLN02789 farnesyltranstransferase

Probab=97.07  E-value=0.0018  Score=68.06  Aligned_cols=72  Identities=15%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCChHH
Q 048211           10 LVATLYVNRASVLQKRD-HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH--DDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~--~~A~~~~~~al~l~p~~~~   81 (665)
                      ....++.+|+.++..++ .++++++.++++++.+|++..+|+.|+.++.++|+.  +++++.++++++++|.|..
T Consensus        69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~  143 (320)
T PLN02789         69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH  143 (320)
T ss_pred             hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence            35678999999999998 589999999999999999999999999999888874  6778888899999998854

>PRK15331 chaperone protein SicA; Provisional

Probab=97.07  E-value=0.0026  Score=59.05  Aligned_cols=79  Identities=9%  Similarity=0.107  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      ....+...|+|+..+++|+.|+.-+..|..+++++|...++.|+|+..+|+.+.|...|+.++. .|...   .++++.+
T Consensus        70 n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~---~l~~~A~  145 (165)
T PRK15331         70 NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE---SLRAKAL  145 (165)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH---HHHHHHH
Confidence            3556788899999999999999999999999888888899999999999999999999988887 34443   3444444


Q ss_pred             HHH
Q 048211           91 IIL   93 (665)
Q Consensus        91 ~~~   93 (665)
                      ..+
T Consensus       146 ~~L  148 (165)
T PRK15331        146 VYL  148 (165)
T ss_pred             HHH
Confidence            433

>PLN02789 farnesyltranstransferase

Probab=97.05  E-value=0.0023  Score=67.27  Aligned_cols=71  Identities=13%  Similarity=0.074  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHL--VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~--~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ...++.+|+.++.++++.  ++++.-++++|+.||.+..||..||-++..+|+|++|++.+.++++.+|.|..
T Consensus       105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s  177 (320)
T PLN02789        105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence            456799999999999974  78899999999999999999999999999999999999999999999999864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.94  E-value=0.0049  Score=71.30  Aligned_cols=72  Identities=15%  Similarity=0.018  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.++.|.|.+..++|++++|....+.+++++|++..|+..+|.++.+++++++|+..+++++..+|++...
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~  156 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE  156 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence            478899999999999999999999999999999999999999999999999999999999999999998654

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.00057  Score=70.12  Aligned_cols=87  Identities=26%  Similarity=0.183  Sum_probs=76.4

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      -..+....+.|.|++-++++.|..|+..+..++..++...+++||++++++.+.++++|++++..+....|++..+.+..
T Consensus       270 ~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~  349 (372)
T KOG0546|consen  270 LRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL  349 (372)
T ss_pred             ccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999998665554


Q ss_pred             HHHHHHH
Q 048211           87 SELKIIL   93 (665)
Q Consensus        87 ~~l~~~~   93 (665)
                      ....+..
T Consensus       350 ~~~~~~~  356 (372)
T KOG0546|consen  350 ENVRQKK  356 (372)
T ss_pred             HHhhhHH
Confidence            4444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.90  E-value=0.0026  Score=61.05  Aligned_cols=75  Identities=15%  Similarity=0.122  Sum_probs=71.4

Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..++..|.+++.|+.-|-.+|-+..|--|+..+|.++|+-|.++.-+|.-+..-|+|+.|.+.|...++++|+..
T Consensus        59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            356779999999999999999999999999999999999999999999999999999999999999999999976

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.87  E-value=0.0071  Score=54.97  Aligned_cols=73  Identities=7%  Similarity=-0.008  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.-+..+.+.|...++.|+|++|++-++....-=|.   -..|.+.+|-+++..++|++|+..+++.++++|+++.
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            345566778888888888888888888877766554   2577888888888888888888888888888887643

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.83  E-value=0.014  Score=51.64  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+..+--.+.++..-|+.+.|++-+.+||.+-|..+.+|.+||+++...|+.++|++|+++++++..+.
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            344455567788889999999999999999999999999999999999999999999999999995543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.83  E-value=0.0063  Score=72.17  Aligned_cols=70  Identities=11%  Similarity=-0.080  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ...++.+++.++...|++++|++.+++++...|+++.+++.+|.++...|++++|++.++++++++|++.
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~  427 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI  427 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence            4567778888888889999999989988888888888888889988889999999999998888888874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.76  E-value=0.0057  Score=60.57  Aligned_cols=63  Identities=16%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      -+-..++.|+|..|+.-+.+|..++|+++++|.-+|-+|.++|++++|...|.+++++.|++.
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p  168 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP  168 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence            667788999999999999999999999999999999999999999999999999999988865

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.75  E-value=0.0016  Score=66.35  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .-.++.-||++|.|++||+-|.+++.++|.++-.+.+||.+|.++..|..|..|-+.|+.++-.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            3578899999999999999999999999999999999999999999999999999998888654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.74  E-value=0.0073  Score=67.44  Aligned_cols=71  Identities=8%  Similarity=0.085  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.-++.-+|+.|-.+|++++|++.+++||+++|..++.|..+|+++...|++.+|.+.++.|-++|+.+-
T Consensus       192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR  262 (517)
T PF12569_consen  192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR  262 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence            34556788999999999999999999999999999999999999999999999999999999999998865

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.73  E-value=0.0091  Score=69.44  Aligned_cols=65  Identities=12%  Similarity=-0.056  Sum_probs=46.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCChH
Q 048211           16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD----AVHDLTIAKNRESSLA   80 (665)
Q Consensus        16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~----A~~~~~~al~l~p~~~   80 (665)
                      .+.+.++.++|++++|+..+.++++.+|+++.+++.+|.++..+|++++    |+..|+++++++|++.
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~  284 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV  284 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence            4456667777777777777777777777777777777777777777764    6777777777777654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.73  E-value=0.0099  Score=52.89  Aligned_cols=67  Identities=16%  Similarity=-0.013  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.+++|.++-.+|+.++|+.-+.+|++...+   -..+++.+|..+..+|++++|+..+++++.-.|++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            46889999999999999999999999998533   36899999999999999999999999999887873

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.73  E-value=0.0061  Score=70.89  Aligned_cols=72  Identities=11%  Similarity=0.007  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVE----CLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~----al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.++.+.|.+|..+|++++    |+..+++|++++|+++.++..+|.++...|++++|+..++++++++|++...
T Consensus       245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a  320 (656)
T PRK15174        245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV  320 (656)
T ss_pred             CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            46778899999999999986    8999999999999999999999999999999999999999999999998643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.67  E-value=0.017  Score=59.03  Aligned_cols=83  Identities=12%  Similarity=0.066  Sum_probs=73.7

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      ....+.+++-.|.+|+..|+|++|+..+.++++..|+   .+.+++++|.++..+|++++|+..|+++++..|+......
T Consensus       176 s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        176 STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            3456778899999999999999999999999998877   5789999999999999999999999999999999887766


Q ss_pred             HHHHHH
Q 048211           85 IESELK   90 (665)
Q Consensus        85 ~~~~l~   90 (665)
                      .++.+.
T Consensus       256 A~~rL~  261 (263)
T PRK10803        256 AQKRLN  261 (263)
T ss_pred             HHHHHh
Confidence            666553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.66  E-value=0.012  Score=50.99  Aligned_cols=67  Identities=18%  Similarity=0.276  Sum_probs=55.6

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQI-------CPS----YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-------~p~----~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .--+.+|+-.|.++..+|+|++++...++||..       +.+    +..+.++||.++..+|+.++|+..|+.+-++
T Consensus        52 GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   52 GFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            347899999999999999999999999999954       444    3456688999999999999999999988664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.60  E-value=0.0034  Score=42.02  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ++|+.+|.++..+|++++|++.|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46667777777777777777777777776664

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.58  E-value=0.0087  Score=67.13  Aligned_cols=69  Identities=17%  Similarity=0.065  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.+|.=.|..+...|++++|...+++|++++|+ ..+|..+|+++...|++++|++.|++|+.++|...+
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            466777788888899999999999999999995 789999999999999999999999999999999764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.57  E-value=0.012  Score=44.10  Aligned_cols=46  Identities=9%  Similarity=-0.008  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211           48 AWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIIL   93 (665)
Q Consensus        48 a~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~   93 (665)
                      -+|-+|.+++++|+|+.|....+.+++++|+|.....+++.++..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            4577788888888888888888888888888887767766665544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.51  E-value=0.011  Score=64.08  Aligned_cols=68  Identities=9%  Similarity=0.033  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-----KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-----ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ..++.+++.++.+.|+|++|++.+.++++.+|.+.     ..+..+|..+...|++++|+..|+++++.+|++
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence            34555566666666666666666666665554432     234455555566666666666666666555554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.51  E-value=0.0055  Score=66.69  Aligned_cols=69  Identities=12%  Similarity=0.128  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      -+.++.-.+..|+-.++|+.|++-++.||..+|++...|.|+|..+..-.+.++|+..|++|+++.|+-
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            344566677788888999999999999999999999999999999999999999999999999999984

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]

Probab=96.48  E-value=0.0017  Score=69.59  Aligned_cols=43  Identities=26%  Similarity=0.372  Sum_probs=35.7

Q ss_pred             cccccCCCcCCcEEEE--eC------CEEEEEEeecCCCCCceeeecCCCC
Q 048211          380 GSLFNHSCLPNIHAYF--LS------RTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       380 ~Sl~NHSC~PN~~~~f--~g------~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      +=++||||.||+.+..  .+      -++.+.|+++|++|+|||..|+..+
T Consensus       273 ~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~  323 (364)
T KOG1082|consen  273 ARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY  323 (364)
T ss_pred             cccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence            3488999999997764  33      2688999999999999999999753

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.46  E-value=0.016  Score=64.25  Aligned_cols=83  Identities=24%  Similarity=0.198  Sum_probs=72.7

Q ss_pred             HHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211          579 LGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ  657 (665)
Q Consensus       579 l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~  657 (665)
                      .+++.++. +.++.-++.+++.+|..||.++-.+..+|.+++..++..+| ..+.+|.+|+.-.+|.+||.|.-.+-+|-
T Consensus       212 ~g~~e~A~-~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa  290 (508)
T KOG1840|consen  212 QGRLEKAE-PLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA  290 (508)
T ss_pred             hccHHHHH-HHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34444454 46677777889999999999999999999999999999999 99999999999999999999999999988


Q ss_pred             HHHhc
Q 048211          658 REALK  662 (665)
Q Consensus       658 ~~~~~  662 (665)
                      .++.+
T Consensus       291 ~ly~~  295 (508)
T KOG1840|consen  291 VLYYK  295 (508)
T ss_pred             HHHhc
Confidence            77643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.44  E-value=0.0067  Score=50.22  Aligned_cols=55  Identities=9%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           25 RDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        25 l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .|+|+.|+.-++++++.+|.  +...++.+|.|++.+|+|++|++.+++ .+.++.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~   58 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP   58 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH
Confidence            68999999999999999995  467788999999999999999999998 77777664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.37  E-value=0.0076  Score=43.21  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           46 AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        46 ~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      |.+|+.+|.++..+|++++|++.|+++++.+|++...
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a   37 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA   37 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            4688999999999999999999999999999999754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.35  E-value=0.016  Score=66.18  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ....-+|.+.+.+|...|+|.+|+.-+.......+. +.-.|+++|.||+.+|.|+.|++.|++++.++|++..+
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~  485 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA  485 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence            446778999999999999999999999998887654 57899999999999999999999999999999998743

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.33  E-value=0.012  Score=57.41  Aligned_cols=64  Identities=14%  Similarity=0.092  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      ...+|.-||..|.++|+.+.|-+.+.+|++++|++.+.+.+-|--+...|+|++|...|++|+.
T Consensus        68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063          68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            5678889999999999999999999999999999999999999999999999999999998875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.012  Score=61.69  Aligned_cols=69  Identities=25%  Similarity=0.222  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ....+-+|+.-.++.|+|..|.+-+..||.+||++    ++.|.+||.+..++|+.++|+.|-+.+++++++-
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence            34567789999999999999999999999999985    7899999999999999999999999999998874

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.024  Score=60.30  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      .+|.-.+--|..+++-.+|++.+++|+++||.+.+|||-+|++|.-|+-..-|+=.|++|+++.|++......+.
T Consensus       365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG  439 (559)
T KOG1155|consen  365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG  439 (559)
T ss_pred             HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            344444455677888888888888888888888888888888888888888888888888888888874444333

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.26  E-value=0.016  Score=47.01  Aligned_cols=64  Identities=23%  Similarity=0.286  Sum_probs=52.0

Q ss_pred             HHHHHHHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHH
Q 048211          574 DASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFL  639 (665)
Q Consensus       574 ~~~~~l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~  639 (665)
                      .+...+++|.+++. +-...++. .+.+|+.||.++..+..||.++...|+.++| .++.+|.+|.+
T Consensus        13 ~~~~~~~~~~~A~~-~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen   13 RVYRELGRYDEALD-YYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHTT-HHHHHH-HHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHH-HHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            34445677777776 44444556 7888999999999999999999999999999 99999999974

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.24  E-value=0.018  Score=71.68  Aligned_cols=70  Identities=9%  Similarity=0.025  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ...+.+++.++...|++++|++.++++++++|+++.+++++|.++..+|++++|+..|+++++.+|++..
T Consensus       461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            3456778899999999999999999999999999999999999999999999999999999999998764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.23  E-value=0.049  Score=55.02  Aligned_cols=73  Identities=4%  Similarity=-0.169  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .-+..+...|..+++.|+|++|++.++.++...|+.+   ++.+..|.+++++++|++|+..+++.++..|+++.+
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~  105 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI  105 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence            3455567788888888888888888888888888764   455888888888888888888888888888887544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.21  E-value=0.035  Score=56.14  Aligned_cols=41  Identities=17%  Similarity=0.119  Sum_probs=33.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           44 SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        44 ~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      ..+..+|..|.-++..|+|++|++.|+.++...|.......
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~   70 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ   70 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            46788889999999999999999999999999888764433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.21  E-value=0.025  Score=67.63  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+..+..+|..++..|+|++|+..+.++++.+|+++.+++.+|.++..+|+|++|+..|+++++..|.+.
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~   90 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN   90 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh
Confidence            4567889999999999999999999999999999999999999999999999999999999999988754

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.16  E-value=0.035  Score=65.96  Aligned_cols=80  Identities=16%  Similarity=0.093  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      ...++.++|.++...|++++|++.+++|++++|+++.+++.+|..+..+|+|++|...++.+++..|++.....+.+..+
T Consensus       392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~  471 (765)
T PRK10049        392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARD  471 (765)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999997766655544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.16  E-value=0.0083  Score=42.02  Aligned_cols=39  Identities=10%  Similarity=0.085  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCc
Q 048211          609 GYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAE  647 (665)
Q Consensus       609 g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~  647 (665)
                      +.-+..||.++...|+.++| ..+.+|..|-+-.+|++||
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp   41 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP   41 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence            45678899999999999999 9999999999999999998

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.15  E-value=0.0098  Score=39.73  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY   45 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~   45 (665)
                      +.+|.++|.+|.++|++++|+..++++++++|+|
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4578999999999999999999999999999864

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.14  E-value=0.017  Score=53.27  Aligned_cols=66  Identities=15%  Similarity=0.116  Sum_probs=57.9

Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048211            6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTI   71 (665)
Q Consensus         6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~   71 (665)
                      ++......+....|..++..|+|++|+..++.+++..|+.   +.+.+|+|.+++..|+|++|+..++.
T Consensus        42 ~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   42 PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            3445677888899999999999999999999999987654   56899999999999999999999976

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.13  E-value=0.041  Score=54.00  Aligned_cols=73  Identities=8%  Similarity=0.021  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      -+..+.+.|..+++.|+|.+|+..++.++..-|+.   +++.+.+|.+++..|+|.+|+..++..++..|+...+.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            45678889999999999999999999999987763   69999999999999999999999999999999976543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.10  E-value=0.008  Score=66.46  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      -+-+|.-.+-=+...++|+.|...+..||..||.+..|||-.|.+|.+.++++.|.-.|++|++++|.|..
T Consensus       454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv  524 (638)
T KOG1126|consen  454 FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV  524 (638)
T ss_pred             cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh
Confidence            34556666666777888899999999999999888899999999999999999999899999999988863

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.08  E-value=0.025  Score=60.34  Aligned_cols=70  Identities=13%  Similarity=-0.038  Sum_probs=64.4

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .....++.+.|.++..+|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|.
T Consensus       111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            3456677889999999999999999999999999999999999999999999999999999999998775

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.07  E-value=0.03  Score=69.67  Aligned_cols=68  Identities=16%  Similarity=0.120  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ...+++.++++.|++++|+..++++++++|+++.+++.+|.++...|++++|++.|+++++++|++..
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999764

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.034  Score=55.93  Aligned_cols=86  Identities=19%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      ..++.+....|.=++|.+.++|+.|+...++.+.++|..+..+--||.+|.++|.+..|++|++...+.-|+......++
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999987665555


Q ss_pred             HHHHHH
Q 048211           87 SELKII   92 (665)
Q Consensus        87 ~~l~~~   92 (665)
                      .++..+
T Consensus       256 ~~l~~l  261 (269)
T COG2912         256 AQLLEL  261 (269)
T ss_pred             HHHHHH
Confidence            554443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.05  E-value=0.0088  Score=57.51  Aligned_cols=73  Identities=12%  Similarity=0.083  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ..+.+|+-.+.-+..-|+|++|++.++.++++||.|--|..+||.+++--|+|+-|.+|+.+...-+|++.-+
T Consensus        97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785          97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence            3677788888888899999999999999999999999999999999999999999999999999999998643

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]

Probab=96.04  E-value=0.003  Score=70.46  Aligned_cols=44  Identities=32%  Similarity=0.577  Sum_probs=34.5

Q ss_pred             ccccccCCCcCCcEEE--EeCC------EEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCLPNIHAY--FLSR------TLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~--f~g~------~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      .+-++||||+||.++.  |...      -+.+.|.+-|++|+|||--|....
T Consensus      1189 lGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~ 1240 (1262)
T KOG1141|consen 1189 LGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQ 1240 (1262)
T ss_pred             hhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccc
Confidence            3458999999999763  4432      367788899999999999998653

>PRK15331 chaperone protein SicA; Provisional

Probab=95.99  E-value=0.045  Score=51.00  Aligned_cols=73  Identities=11%  Similarity=-0.074  Sum_probs=63.9

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +++.+-.+|. .|.-++..|+|++|..-+.-..-+||.+++-|.-+|.|+..+++|+.|++.|..|..+++++.
T Consensus        33 s~~~le~iY~-~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         33 PQDMMDGLYA-HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             CHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            3444555555 788899999999999999999999999999999999999999999999999999998877653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.97  E-value=0.015  Score=64.94  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=56.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           23 QKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        23 ~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      +..++|++|.++.+.++++||.+...||++|-|..++++++.|+++|..+..++|++...
T Consensus       496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea  555 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA  555 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence            345899999999999999999999999999999999999999999999999999998654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.95  E-value=0.045  Score=65.39  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=60.6

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ....+.++..++.+++++|++++|+..++++++.+|+++.+++.+|.++...|++++|++.++++++.+|.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  194 (899)
T TIGR02917       121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD  194 (899)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence            34456778888888888888888888888888888888888888888888888888888888888888877643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11906 transcriptional regulator; Provisional

Probab=95.86  E-value=0.033  Score=60.02  Aligned_cols=68  Identities=12%  Similarity=0.006  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +.++.-.|.++...++++.|+..+++|+.++|+++.+|+..|......|+.++|.+.++++++++|.-
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            44445555555555556666666666666666666666666666666666666666666666666654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.86  E-value=0.027  Score=63.34  Aligned_cols=79  Identities=16%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCChHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVH--DLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~--~~~~al~l~p~~~~~~~~~   86 (665)
                      .+.+..|+-|+..+...|.+++|.+-+..|+.+||+.+....-.|.++...|+-.-|..  .+..+++++|.|.....-.
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            45677889999999999999999999999999999998888888888888888877776  8888888888887554433


Q ss_pred             H
Q 048211           87 S   87 (665)
Q Consensus        87 ~   87 (665)
                      .
T Consensus       761 G  761 (799)
T KOG4162|consen  761 G  761 (799)
T ss_pred             H
Confidence            3

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.81  E-value=0.039  Score=59.64  Aligned_cols=70  Identities=10%  Similarity=-0.004  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ...++.+++.++...|++++|+..+++++...+..    ..++..+|.++...|++++|+..|+++++.+|.+.
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~  141 (389)
T PRK11788         68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE  141 (389)
T ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH
Confidence            35678889999999999999999999988864322    35688889999999999999999999998877654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.79  E-value=0.015  Score=45.94  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 048211           11 VATLYVNRASVLQKRD-HLVECLRDCNRAVQICP   43 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p   43 (665)
                      .+.+|.|||.+|.++| ++++|+.++++|+++||
T Consensus        36 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   36 NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            6779999999999999 79999999999999998

...

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]

Probab=95.78  E-value=0.006  Score=70.13  Aligned_cols=41  Identities=24%  Similarity=0.352  Sum_probs=34.0

Q ss_pred             cccccCCCcCCcEE---EEeC-CEEEEEEeecCCCCCceeeecCC
Q 048211          380 GSLFNHSCLPNIHA---YFLS-RTLMIRTTEFVPSGYPLELSYGP  420 (665)
Q Consensus       380 ~Sl~NHSC~PN~~~---~f~g-~~~~vrA~r~I~~GeeI~isY~~  420 (665)
                      +=++||||.||+..   ..+| .++.|.|.|||++||||+.-|-.
T Consensus      1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred             ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccc
Confidence            44789999999944   4455 47999999999999999999854

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.76  E-value=0.025  Score=58.42  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=27.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           20 SVLQKRDHLVECLRDCNRAVQIC--PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        20 ~~~~~l~~~~~al~d~~~al~~~--p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..+.+.++++++.+-++.+.+..  +.++..|..+|.++.+.|++++|++.|+++++++|++.
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~  180 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP  180 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            34445555555555555544433  33445555555555555555555555555555555543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.74  E-value=0.026  Score=63.97  Aligned_cols=90  Identities=31%  Similarity=0.383  Sum_probs=77.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            4 NDKDRNLVATLYVNRASVLQKR--DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l--~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      -|.+..+.+.++.|++.+|..+  ++|..++.+++.|+..+|.+.+++++|+.+|..++.++-|++++.....++|++..
T Consensus        83 lp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~  162 (748)
T KOG4151|consen   83 LPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS  162 (748)
T ss_pred             ccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence            4567788999999999999886  58999999999999999999999999999999999999999999999999999854


Q ss_pred             HHHHHHHHHHHH
Q 048211           82 KKQIESELKIIL   93 (665)
Q Consensus        82 ~~~~~~~l~~~~   93 (665)
                      ...+-.+++.++
T Consensus       163 ~~eif~elk~ll  174 (748)
T KOG4151|consen  163 ASEIFEELKGLL  174 (748)
T ss_pred             HHHHHHHHHHHH
Confidence            444444555444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.69  E-value=0.061  Score=59.72  Aligned_cols=70  Identities=19%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .-.+|+-.+.+|+++++++.|.-.+.+|+++||.+.-...-.|..+.++|+.+.|+..|++|+.++|.+.
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            4567888999999999999999999999999999999999999999999999999999999999999874

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.63  E-value=0.095  Score=47.72  Aligned_cols=82  Identities=12%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      .+....+..+.+-+|++.++|++|+..+++=++++|.++   -|+|++|.+++.+..  .++   ......+-+.....+
T Consensus        43 g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~--~~~---~~~~~~drD~~~~~~  117 (142)
T PF13512_consen   43 GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE--GSL---QSFFRSDRDPTPARQ  117 (142)
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh--hHH---hhhcccccCcHHHHH
Confidence            345667888999999999999999999999999999875   679999999887765  233   333333333334456


Q ss_pred             HHHHHHHHHh
Q 048211           85 IESELKIILD   94 (665)
Q Consensus        85 ~~~~l~~~~~   94 (665)
                      ....++.++.
T Consensus       118 A~~~f~~lv~  127 (142)
T PF13512_consen  118 AFRDFEQLVR  127 (142)
T ss_pred             HHHHHHHHHH
Confidence            6666666665

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.59  E-value=0.097  Score=51.32  Aligned_cols=86  Identities=13%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLEN-----------HDDAVHDLTIA   72 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~-----------~~~A~~~~~~a   72 (665)
                      ..+....+....|.++++.|+|+.|+..+++-++.-|+.   +.++|.+|.+++.+..           ..+|+..|+..
T Consensus        37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l  116 (203)
T PF13525_consen   37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL  116 (203)
T ss_dssp             TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence            345677888999999999999999999999999998876   5789999999877642           35889999999


Q ss_pred             HhcCCChHHHHHHHHHHHHH
Q 048211           73 KNRESSLAGKKQIESELKII   92 (665)
Q Consensus        73 l~l~p~~~~~~~~~~~l~~~   92 (665)
                      ++.-|++.-..+....+..+
T Consensus       117 i~~yP~S~y~~~A~~~l~~l  136 (203)
T PF13525_consen  117 IKRYPNSEYAEEAKKRLAEL  136 (203)
T ss_dssp             HHH-TTSTTHHHHHHHHHHH
T ss_pred             HHHCcCchHHHHHHHHHHHH
Confidence            99999987655555444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.57  E-value=0.088  Score=48.45  Aligned_cols=63  Identities=16%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK   73 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al   73 (665)
                      ...+....+..+...|++++|+..+.+++..+|.+-.+|..+-.++..+|++.+|++.|++..
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            445666677888899999999999999999999999999999999999999999999988764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]

Probab=95.56  E-value=0.0088  Score=59.17  Aligned_cols=43  Identities=26%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             ccccccCCCcCCcEEE---EeC-CEEEEEEeecCCCCCceeeecCCC
Q 048211          379 AGSLFNHSCLPNIHAY---FLS-RTLMIRTTEFVPSGYPLELSYGPQ  421 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~---f~g-~~~~vrA~r~I~~GeeI~isY~~~  421 (665)
                      ..-|||||=.+|+...   .+| .++++.|.+||.+||||+..|+|-
T Consensus       333 lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR  379 (392)
T KOG1085|consen  333 LGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR  379 (392)
T ss_pred             chhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence            3568999999999443   345 479999999999999999999974

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.087  Score=56.24  Aligned_cols=70  Identities=11%  Similarity=0.112  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      --.+|+-.+++|--++.+.-|+-.+.+|+++.|+++..|.-+|+||.++++.++|+..|..|+...-.++
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence            4568899999999999999999999999999999999999999999999999999999999999866544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.54  E-value=0.043  Score=63.30  Aligned_cols=80  Identities=4%  Similarity=0.034  Sum_probs=71.6

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      ..+.+..|++.|-+|..+|+|+.|...|-.|++.+|++ .=.+++.|+.+...|+++.|+..|+++++..|++...-.++
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            45678889999999999999999999999999999887 77899999999999999999999999999999987544444


Q ss_pred             H
Q 048211           87 S   87 (665)
Q Consensus        87 ~   87 (665)
                      .
T Consensus       383 G  383 (1018)
T KOG2002|consen  383 G  383 (1018)
T ss_pred             H
Confidence            3

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.52  E-value=0.032  Score=63.81  Aligned_cols=62  Identities=16%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK   73 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al   73 (665)
                      +.+|.+.|.||..+|.|+.|++-+.+||.++|++.++..+++..+..+|+.++|++.+....
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            77899999999999999999999999999999999999999999999999999999988755

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.50  E-value=0.067  Score=51.00  Aligned_cols=63  Identities=19%  Similarity=0.278  Sum_probs=56.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           18 RASVLQKRDHLVECLRDCNRAVQICPSY-----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        18 Ra~~~~~l~~~~~al~d~~~al~~~p~~-----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      -+.-+|+-|+|++|...|..||++-|.-     .-.|.+||.|+++|+.++.|+++-.+|++++|+..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~  168 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE  168 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH
Confidence            4567899999999999999999998764     34688999999999999999999999999999865

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.46  E-value=0.14  Score=45.56  Aligned_cols=68  Identities=18%  Similarity=0.026  Sum_probs=59.7

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      +.+....++.++|.+|..+|++++|+.-++.++...|+   +..+..-.+.++..+|++++|+..+-.++.
T Consensus        33 ~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   33 SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34567789999999999999999999999999998777   777777789999999999999998877664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.42  E-value=0.1  Score=48.10  Aligned_cols=67  Identities=18%  Similarity=0.122  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..|...-..+ ..+++..+...++..++-.|+.   ..+.+.+|.+++..|+|++|++.|+.++...|+..
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~   82 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE   82 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH
Confidence            3444333333 5788888877788888887776   46778888999999999999999999888766654

>smart00028 TPR Tetratricopeptide repeats

Probab=95.40  E-value=0.022  Score=36.32  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .+|+++|.++..++++++|+..|+.+++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35566666666666666666666666666553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.37  E-value=0.079  Score=39.62  Aligned_cols=37  Identities=19%  Similarity=0.095  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWY   50 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~   50 (665)
                      ++...|.+++++|+|+.|.+.++.+|+++|+|..|..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4667899999999999999999999999999987643

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.058  Score=55.27  Aligned_cols=73  Identities=15%  Similarity=0.163  Sum_probs=65.3

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC---PS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~---p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +...|.-|---+.=|++-++|..|+.-+...|+.+   |+ ++-.|.+||.|...+|+|..|+.|-.+|+.++|.+.
T Consensus        77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            34578888888999999999999999999999986   33 567899999999999999999999999999999974

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.32  E-value=0.12  Score=55.74  Aligned_cols=66  Identities=9%  Similarity=0.048  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..-++..+++.++..+|++-+++|+.++|+.+-.++..|++++++|++.+|+..++..+.-+|++.
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            333445555555555555555555555555555555555555555555555555555555455443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.32  E-value=0.099  Score=52.00  Aligned_cols=72  Identities=14%  Similarity=0.026  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...+|.-++.+|.++|+++.|-..+.+|+++.|+.+..+.++|-.++.-|+++.|...+..+....+.+..+
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v  204 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV  204 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence            456788999999999999999999999999999999999999999999999999999999988776666633

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.10  E-value=0.089  Score=53.54  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           28 LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        28 ~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      .+.-+.-.+..|..||++++.|..+|.+|+.+|++.+|...|.+|.++.|+|..+.-
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~  194 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILL  194 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHH
Confidence            456677778888899999999999999999999999999999999999999985543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.04  E-value=0.056  Score=43.03  Aligned_cols=43  Identities=28%  Similarity=0.374  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG   53 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a   53 (665)
                      ...++.++|.+|+++|+|++|+++++++++.+|+.+.+..-++
T Consensus        28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen   28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            5677999999999999999999999999999999988765444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.00  E-value=0.037  Score=36.37  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .|++++|.++..+|++++|++.|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            36788888888888888888888888877775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.99  E-value=0.18  Score=50.67  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      .+|-|..+++.|+|..|..-+..=++.=|+.   +.|+|=+|++++.+|+|++|...|..+.+--|+....++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd  216 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD  216 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence            7788888999999999999888888876653   678888999999999999999999888887777654433

>KOG1337 consensus N-methyltransferase [General function prediction only]

Probab=94.89  E-value=0.018  Score=64.21  Aligned_cols=61  Identities=23%  Similarity=0.218  Sum_probs=48.5

Q ss_pred             EEEeccccccccCCCcCCcEEEEe-CCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCee
Q 048211          373 GLAIYTAGSLFNHSCLPNIHAYFL-SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFR  441 (665)
Q Consensus       373 g~glyp~~Sl~NHSC~PN~~~~f~-g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~  441 (665)
                      -.++.|..=+.||+|.+....++. +..+.+.+.++|.+||||+|+||+.    +    ...|...|+|.
T Consensus       230 ~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~----~----N~eLL~~YGFv  291 (472)
T KOG1337|consen  230 NEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPK----S----NAELLLHYGFV  291 (472)
T ss_pred             chhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCC----c----hHHHHHhcCCC
Confidence            357999999999999994443333 3489999999999999999999974    2    23466689998

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.06  Score=52.75  Aligned_cols=64  Identities=16%  Similarity=0.173  Sum_probs=58.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      +..++.-.+|..|+..+.+||.++|..+..|.+||.|++++.+++-+..|-.+|++++|+....
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~   80 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA   80 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence            4456667789999999999999999999999999999999999999999999999999997543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=94.84  E-value=0.095  Score=56.52  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA   72 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a   72 (665)
                      +.--|..+++.++|+.|+.-+.+|.++.|+..+.|+.+|++|..+|+|+.|+..++.+
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            3334444555555566666666666655555566666666666666665555555433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=94.76  E-value=0.097  Score=53.53  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      -..|.+|...|..+....+.+.|+....+|++.||+...|=.-+|.+....|+|+.|++.++.+++-+|.-
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999998874

>PRK11906 transcriptional regulator; Provisional

Probab=94.75  E-value=0.12  Score=55.73  Aligned_cols=73  Identities=14%  Similarity=-0.043  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           10 LVATLYVNRASVLQKR---------DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l---------~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..+.+|.-+|.|++..         ..-.+|++-+++|+++||+++.|++.+|.++...++++.|...|++|+.++|+..
T Consensus       293 ~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A  372 (458)
T PRK11906        293 LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA  372 (458)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence            3577777788777764         2356789999999999999999999999999999999999999999999999976


Q ss_pred             HH
Q 048211           81 GK   82 (665)
Q Consensus        81 ~~   82 (665)
                      ..
T Consensus       373 ~~  374 (458)
T PRK11906        373 SL  374 (458)
T ss_pred             HH
Confidence            43

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.75  E-value=0.041  Score=56.76  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..+..+.+..+...|+++++.+-+....+..|+++..|...|.++..+|++++|+..|+++++.+|++..
T Consensus       180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  180 PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence            3345566777888899888777777777776777778888899999999999999999999999998764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.62  E-value=0.26  Score=53.17  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ..+.+-+|..++..+.+++|+.-.+.-++..|+|+-.+--++..+...++.++|.+.+++++.++|+.
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~  373 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS  373 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence            34455566666666666666666666666666666666666666666666666666666666666664

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=94.54  E-value=0.1  Score=53.38  Aligned_cols=64  Identities=11%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           17 NRASVLQKRDHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        17 NRa~~~~~l~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      -++.++...|+|+.|++.++++++.||+| +...-++..||..+|+.++....+..+.+..++..
T Consensus       219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            35668889999999999999999999998 67888899999999999999999999998877654

>smart00028 TPR Tetratricopeptide repeats

Probab=94.50  E-value=0.055  Score=34.33  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY   45 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~   45 (665)
                      .++.++|.++..+++++.|+..+.++++.+|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.47  E-value=0.058  Score=52.49  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=57.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ....+-++++.|.+-+++|+++-|.+...|+|.|.-..+-|+++.|.+.|++.++++|.+..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34567789999999999999999999999999999999999999999999999999998754

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=94.45  E-value=0.078  Score=59.53  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES   77 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p   77 (665)
                      .+..-.|++++.|.+++++++.|..++.+.+.++|++..+|.+.+.+|..++.-.+|...++.|++-+-
T Consensus       516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            345667999999999999999999999999999999999999999999999999999999999998653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.40  E-value=0.033  Score=59.80  Aligned_cols=68  Identities=19%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      |..+.|-|.-+++-+.|+.|+.-+.+||+++|+.+-.|-.|+.++.+.++|..|+.|+.+|++++|..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            44566778889999999999999999999999999999999999999999999999999999999975

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.19  E-value=0.038  Score=37.64  Aligned_cols=28  Identities=14%  Similarity=0.089  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           48 AWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        48 a~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      +|.++|.++..+|+|++|++.|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3556666666666666666666665443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=94.17  E-value=0.0086  Score=59.55  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=27.9

Q ss_pred             cccccccccccccCCcCCCCCCCccccchHHHHhhh
Q 048211          162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAG  197 (665)
Q Consensus       162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~  197 (665)
                      ..+|..|..+-  ...+|+.|+.+.||+++||+-.|
T Consensus       319 ~~fCstCG~~g--a~KrCs~CKav~YCdqeCQk~hW  352 (396)
T KOG1710|consen  319 CQFCSTCGHPG--AKKRCSQCKAVAYCDQECQKFHW  352 (396)
T ss_pred             cccccccCCCC--ccchhhhhHHHHHHHHHHHHhhh
Confidence            46777787753  35799999999999999999765

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.03  E-value=0.014  Score=59.90  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=56.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .-.+..|.++.|++.+..||+++|..+..|..||.++.+|++...|+.|+..|++++|+..
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            3345678899999999999999999999999999999999999999999999999999864

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.98  E-value=0.1  Score=60.41  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=55.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChH
Q 048211           21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~   80 (665)
                      --++.++|++|++.+.++|+.||+|.-|+.-+|.++..++. .++|.+.|..|.+++|++-
T Consensus        11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnl   71 (1238)
T KOG1127|consen   11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNL   71 (1238)
T ss_pred             HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhh
Confidence            34566799999999999999999999999999999999999 9999999999999999984

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.78  E-value=0.18  Score=54.44  Aligned_cols=40  Identities=15%  Similarity=-0.025  Sum_probs=38.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           41 ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        41 ~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+|+++.+|+++|.+|..+|+|++|+..|+++++++|++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a  109 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD  109 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence            4688999999999999999999999999999999999976

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.65  E-value=0.17  Score=39.30  Aligned_cols=37  Identities=16%  Similarity=0.177  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA   46 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~   46 (665)
                      -.+.++..+|.+++++|++++|+..++++++.+|++|
T Consensus        29 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   29 DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3788899999999999999999999999999999976

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.65  E-value=0.27  Score=49.88  Aligned_cols=74  Identities=14%  Similarity=0.065  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...|.+-.|.|.-..+.|+.++|..-+..|+.++|.++.++.+.|+....-++.-+|-..|-+|+.++|.|+..
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            34677888888889999999999999999999999999999999999988888999999999999999998743

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=93.60  E-value=0.48  Score=53.12  Aligned_cols=70  Identities=13%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      -+..-++.++...|++++|++.....-+.-.+....+-.+|.++.++|++++|...|...++.+|+|..-
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Y   74 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDY   74 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence            3445567789999999999999998887778888999999999999999999999999999999998743

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=93.55  E-value=0.042  Score=47.96  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=28.6

Q ss_pred             eEeeecCCCCcccccccCCCCCCcccccCCceec
Q 048211          122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVT  155 (665)
Q Consensus       122 ~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~  155 (665)
                      +++..++.+|+||+|+++|++|++|+...+.+..
T Consensus         2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~   35 (116)
T smart00317        2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIIT   35 (116)
T ss_pred             cEEEecCCCcEEEEECCccCCCCEEEEEEeEEEC
Confidence            3456678999999999999999988887777765

Putative methyl transferase, based on outlier plant homologues

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.37  E-value=0.41  Score=56.77  Aligned_cols=70  Identities=7%  Similarity=0.015  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ...+...|..|..+|+|++|++-++++++.+|+++.+++-++..+..++++++|++.++++...+|++..
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~  171 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN  171 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence            3444445778889999999999999999999999999998889999999999999999999999998643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=0.74  Score=47.00  Aligned_cols=67  Identities=7%  Similarity=-0.071  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCChH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN---HDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~---~~~A~~~~~~al~l~p~~~   80 (665)
                      -|.-.+-+|+.++++..|+.-|.+|+++.|+++..+.-.|.+++....   -.+|.+.|+++++++|+|-
T Consensus       158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i  227 (287)
T COG4235         158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI  227 (287)
T ss_pred             hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence            355677888888888888888888888888877666666666655533   2455666666666666654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.16  E-value=0.37  Score=50.04  Aligned_cols=54  Identities=11%  Similarity=0.019  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           27 HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        27 ~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+++|..-++..-+.-+..++.+..+|.|++.+|+|++|.+.++.++..+|++.
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence            467777766664443355667777777777777777777777777777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=0.25  Score=52.27  Aligned_cols=68  Identities=12%  Similarity=0.045  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDA-VHDLTIAKNRESS   78 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A-~~~~~~al~l~p~   78 (665)
                      +..+++.|+.|++.+++|+.|..|+.+|++++|+|-.+-..+..+..+..++.+. .+.|..++..-+.
T Consensus       290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            6678899999999999999999999999999999977777778888888887766 5677777765443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.94  E-value=0.38  Score=56.89  Aligned_cols=62  Identities=13%  Similarity=-0.021  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .++..+|.||-++|++++|+..++++|++||+++.++.+.|-.|... +.+.|++.+.+|+..
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            57888999999999999999999999999999999999999999999 999999999998765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=92.88  E-value=0.35  Score=51.48  Aligned_cols=67  Identities=10%  Similarity=0.039  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      +.++.+.|.+|+..|++++|+..+++++...|..    ...|+.+|.++...|++++|+..|+++....|.
T Consensus       148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            5678889999999999999999999999997643    346778999999999999999999999776663

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.80  E-value=0.65  Score=46.79  Aligned_cols=80  Identities=18%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      ....+.+++=.+.+++.+|+|++|..-+..+.+-.|+.   |++++.+|.+...+|+.++|...|+.+.+-=|+......
T Consensus       174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            44566777778999999999999999999999988775   577999999999999999999999999999999876544


Q ss_pred             HHH
Q 048211           85 IES   87 (665)
Q Consensus        85 ~~~   87 (665)
                      .+.
T Consensus       254 Ak~  256 (262)
T COG1729         254 AKV  256 (262)
T ss_pred             HHH
Confidence            433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.71  E-value=0.57  Score=51.69  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ..++-+|.|+++++..++|+.+++   .+|+...+++.-+|+.++++|+|++|++.|+...+-+.++
T Consensus        80 ~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   80 SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            344789999999999999999999   7788888999999999999999999999999987765543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.63  E-value=0.25  Score=33.55  Aligned_cols=29  Identities=7%  Similarity=0.186  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQIC   42 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~   42 (665)
                      +|.|.|.+|.++|+|++|++-++++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999977653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.52  E-value=0.34  Score=48.27  Aligned_cols=72  Identities=15%  Similarity=0.119  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .-..+.|.+..|+-.++|..|...+++.+..||.++-+-.++|.|++.+|+..+|++.++.+....|.....
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence            445678888999999999999999999999999999999999999999999999999999999999986543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.42  E-value=0.19  Score=51.37  Aligned_cols=71  Identities=20%  Similarity=0.291  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC--PS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ...+|.|.+.|-+.-++|+-++..+.+|+..-  |+ -++.||++|.+....|++.-|...|+-++.-++++.+
T Consensus       357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e  430 (478)
T KOG1129|consen  357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE  430 (478)
T ss_pred             ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence            45679999999999999999999999999884  44 4789999999999999999999999999999998763

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=92.02  E-value=1.4  Score=48.02  Aligned_cols=73  Identities=12%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      |..-+.+..++|+++.|.+.+.+|.+.+|++. -...+.+..+...|+++.|.+.++++.+.+|++.....+..
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~  194 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAE  194 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            44445555899999999999999999988874 33456689999999999999999999999999875544433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=92.00  E-value=0.83  Score=53.21  Aligned_cols=82  Identities=22%  Similarity=0.159  Sum_probs=72.2

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE   88 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~   88 (665)
                      .+.-+.-+|+|.++-.++++..|-+-|..+++..|+|..+|.|+|......++..+|...+..++..+..+..+..+...
T Consensus       493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~  572 (1018)
T KOG2002|consen  493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN  572 (1018)
T ss_pred             cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence            35567789999999999999999999999999999999999999976677889999999999999999888776666654


Q ss_pred             HH
Q 048211           89 LK   90 (665)
Q Consensus        89 l~   90 (665)
                      +.
T Consensus       573 ~~  574 (1018)
T KOG2002|consen  573 LH  574 (1018)
T ss_pred             HH
Confidence            43

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.69  E-value=1.4  Score=37.06  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           31 CLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        31 al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+....++++.||+++.+.+..|..+...|++++|++.+-.+++.+++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4677889999999999999999999999999999999999999988764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.65  E-value=1.2  Score=42.72  Aligned_cols=76  Identities=21%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.|..+.+++-.+.|.+.+++|.+++|+.-.+..-+  +++ +-.-..||.++...|+-.+|...|++++..+++...
T Consensus       118 ~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         118 QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            4667788999999999999999999999886654332  233 233567899999999999999999999998866543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.47  E-value=1.3  Score=44.32  Aligned_cols=73  Identities=11%  Similarity=-0.051  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .-+.-+.|-|...++-|+|++|++.+++....-|..   .++.+-.+.++++-++|++|+..+++.+++.|++..+
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            356778899999999999999999999999887664   6899999999999999999999999999999987644

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=91.46  E-value=1  Score=49.09  Aligned_cols=58  Identities=9%  Similarity=0.090  Sum_probs=51.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           24 KRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        24 ~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..++.++++.-++..++..|+++..++-.|..+...++|++|.+.|+++++.+|++..
T Consensus       306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence            3477888888888888888999999999999999999999999999999999999875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=91.39  E-value=0.55  Score=52.33  Aligned_cols=67  Identities=13%  Similarity=-0.000  Sum_probs=58.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      +-.+..+..+|+-++|...+..++..|+...--|.-.|..+..-.+|.+|+..|+.|+.++|+|..+
T Consensus        45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qi  111 (700)
T KOG1156|consen   45 AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQI  111 (700)
T ss_pred             HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            3456677888888999999998888888888889999999999999999999999999999999843

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.36  E-value=0.34  Score=51.20  Aligned_cols=62  Identities=19%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +..++..++|..|+.-.+++|..||.+..||.-+|..+..+|+.++|+-.|+.|..+.|..-
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL  368 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL  368 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence            45567788999999999999999999999999999999999999999999999999998753

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=91.35  E-value=0.54  Score=44.48  Aligned_cols=55  Identities=15%  Similarity=0.105  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCChH
Q 048211           26 DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH----------DDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        26 ~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~   80 (665)
                      --|+.|.+.++.+...||.++++++|=|-++..|.++          ++|+.-|+.|+.++|+..
T Consensus         5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h   69 (186)
T PF06552_consen    5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH   69 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH
Confidence            3488999999999999999999999999999888554          677888999999999964

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.14  E-value=0.51  Score=49.97  Aligned_cols=65  Identities=18%  Similarity=0.245  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      +.+..-...+.||+++++.+.|+....+.|-+||.|+.-++|+|.|+..|.+|.+|-..+..|.-
T Consensus       226 vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  226 VASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             HHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667899999999999999999999999999999999999999999999999887766644

>PRK14574 hmsH outer membrane protein; Provisional

Probab=91.05  E-value=2.2  Score=50.81  Aligned_cols=74  Identities=7%  Similarity=-0.041  Sum_probs=64.6

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ++....++..++.++...|++.+|.+-+++.+...|+++..+..+|.++...|++.+|+..++.+..++|++..
T Consensus       412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~  485 (822)
T PRK14574        412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI  485 (822)
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence            34455788889999999999999999999999999999999999999999999999999999888888998754

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.05  E-value=0.81  Score=47.04  Aligned_cols=77  Identities=4%  Similarity=-0.059  Sum_probs=61.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211           16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIIL   93 (665)
Q Consensus        16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~   93 (665)
                      ...+-||+++|.+.+|...+..+|+-. ..++.|.-++++|.++.....|+..|...+..-|.+.+..-...++.+.+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence            357889999999999999999999865 35788888999999999999999999999999998865433333333333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.54  E-value=0.32  Score=50.30  Aligned_cols=60  Identities=13%  Similarity=-0.108  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA   72 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a   72 (665)
                      .+-.=.|-|++++|+|++|+..++.+.+-+.-+++.+..+|-|+..||.|.+|.....+|
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            333446889999999999999999998876667899999999999999999998765543

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]

Probab=90.36  E-value=0.24  Score=55.06  Aligned_cols=43  Identities=23%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             ccccccCCCcCCcEE---EEeC-CEEEEEEeecCCCCCceeeecCCC
Q 048211          379 AGSLFNHSCLPNIHA---YFLS-RTLMIRTTEFVPSGYPLELSYGPQ  421 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~---~f~g-~~~~vrA~r~I~~GeeI~isY~~~  421 (665)
                      .+=+.|||=.||+..   +..| .+|-++|.|.|.+|||||..|...
T Consensus       665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs  711 (739)
T KOG1079|consen  665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS  711 (739)
T ss_pred             hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence            455789999999933   2334 478899999999999999999853

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.28  E-value=0.53  Score=30.66  Aligned_cols=31  Identities=16%  Similarity=0.137  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPS   44 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~   44 (665)
                      ++.+.|.+|.++|++++|++.++++++.-|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6789999999999999999999999998776

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.16  E-value=3.3  Score=37.27  Aligned_cols=85  Identities=9%  Similarity=0.060  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           10 LVATLYVNRASVLQKRDH---LVECLRDCNRAVQ-ICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~---~~~al~d~~~al~-~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      +.....+|.|.++.+..+   .++.+.-++..++ -.|. .-.-+|-+|..++++++|+.|+...+..++.+|+|.....
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            345567888999988765   4455665666665 2333 3455678899999999999999999999999999998878


Q ss_pred             HHHHHHHHHh
Q 048211           85 IESELKIILD   94 (665)
Q Consensus        85 ~~~~l~~~~~   94 (665)
                      +++.++..+.
T Consensus       110 Lk~~ied~it  119 (149)
T KOG3364|consen  110 LKETIEDKIT  119 (149)
T ss_pred             HHHHHHHHHh
Confidence            8777766554

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=89.99  E-value=0.23  Score=37.06  Aligned_cols=31  Identities=35%  Similarity=0.831  Sum_probs=22.0

Q ss_pred             cccccccccc-CCcCCCCCCCccccchHHHHh
Q 048211          165 CHYCLNELPA-DAIPCTSCSIPLYCSRRCRGQ  195 (665)
Q Consensus       165 C~~C~~~~~~-~~~~C~~C~~~~YCS~~C~~~  195 (665)
                      |..|....+. ..+.|+.|+++.|||++=...
T Consensus         2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~   33 (55)
T PF13824_consen    2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWED   33 (55)
T ss_pred             CCCCccccccccCCcCCCCCCcCccCHHHHHH
Confidence            6666664332 357999999999999864443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=89.83  E-value=1.3  Score=49.59  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKII   92 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~   92 (665)
                      |..-+...-.+++.++|++-++.+|+.=|+++|.|..+|+++..+++.+.|.+.|...++.-|+.....-++..++..
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            333333444588999999999999999999999999999999999999999999999999999976554444444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.69  E-value=0.78  Score=31.62  Aligned_cols=30  Identities=23%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQI   41 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~   41 (665)
                      +.++.|.|.+|..+|+|++|+.-+.+++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            456778888888888888888888777765

>TIGR00540 hemY_coli hemY protein

Probab=89.61  E-value=1.6  Score=47.76  Aligned_cols=69  Identities=10%  Similarity=0.048  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.-.|.++.++|+++.|.+.+.++.+..|+.. .+...++..+...|++++|.+.++...+..|++...
T Consensus       120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~  189 (409)
T TIGR00540       120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEV  189 (409)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            344556677777777777777777777766654 333335777777777777777777777777777644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=89.55  E-value=3.3  Score=45.30  Aligned_cols=70  Identities=7%  Similarity=-0.041  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.-...+|...+..|+|+.|.+...++.+..|+..-.+.-.|++...+|+++.|.+.|.++.+..|++.
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~  152 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN  152 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence            4566678999999999999999999999999999888889999999999999999999999999888864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.33  E-value=0.49  Score=50.33  Aligned_cols=73  Identities=18%  Similarity=0.150  Sum_probs=51.6

Q ss_pred             CCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211            6 KDRNLVATLYVNRASVLQKRD--HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus         6 ~~~~~~a~~~~NRa~~~~~l~--~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      +++.+.+.+-.|.++.++-+|  ++..|-..++.|+..|..++.|+.++|...+..|+++.|.+.|+.|+.-+.+
T Consensus       448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas  522 (840)
T KOG2003|consen  448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS  522 (840)
T ss_pred             ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence            355666677777777776643  5777777777777777777777777777777777777777777777665443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.22  E-value=2.5  Score=44.96  Aligned_cols=77  Identities=10%  Similarity=0.003  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKI   91 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~   91 (665)
                      +-.-.|..+...|++++++.-.+++|..-|+. -....+|..+...+.+.+|.+.|.+|++++|+++...+..+.+++
T Consensus       440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK  516 (564)
T KOG1174|consen  440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK  516 (564)
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence            33445666777888999999999998876553 345557999999999999999999999999999865555555544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.15  E-value=0.56  Score=32.39  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           47 KAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      +.|.++|.+-...++|++|++||++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46788899999999999999999998876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.08  E-value=1.7  Score=46.37  Aligned_cols=72  Identities=17%  Similarity=0.100  Sum_probs=63.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..++.+..|.+..-+--|+++.|++.+..||..|..-..|+|+.|..+.++|+.++|++.|-+...+--++.
T Consensus       487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~  558 (840)
T KOG2003|consen  487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA  558 (840)
T ss_pred             ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence            357788889998889999999999999999999888899999999999999999999999988777655554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=88.98  E-value=0.53  Score=36.63  Aligned_cols=44  Identities=11%  Similarity=-0.045  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGK   54 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~   54 (665)
                      ...++.+.|.+|+++|++++|.+-+.+++..+|+++..+.-+++
T Consensus        24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen   24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            55667899999999999999999999999999998777655554

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=88.97  E-value=0.65  Score=54.14  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+..|+..|++-+++-.|+.++..|+..+|....+|.-+|++|-.-|+|..|++.|.+|..++|...
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            3455888899999999999999999999999999999999999999999999999999999999874

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.28  E-value=1.6  Score=43.20  Aligned_cols=70  Identities=9%  Similarity=0.005  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYA----------KAWYRRGKVNVSLENHDDAVHDLTIA   72 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~----------ka~~r~a~~~~~l~~~~~A~~~~~~a   72 (665)
                      ...++..++.-+|++|+|++|..-|..|+..        .|..+          ..+.+..+|+...|+|-++++.-...
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3346678999999999999999999988754        34432          46899999999999999999999999


Q ss_pred             HhcCCChH
Q 048211           73 KNRESSLA   80 (665)
Q Consensus        73 l~l~p~~~   80 (665)
                      +..+|.|.
T Consensus       257 L~~~~~nv  264 (329)
T KOG0545|consen  257 LRHHPGNV  264 (329)
T ss_pred             HhcCCchH
Confidence            99999985

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.55  E-value=5.5  Score=39.84  Aligned_cols=68  Identities=12%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..|-.+-++.-.+|+--+||+....-++.=+++..||...+..|..+|.|+.|.=.|+..+-+.|.+.
T Consensus       121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~  188 (289)
T KOG3060|consen  121 VIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP  188 (289)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence            33333444444455555555555555555555555666666666666666666655665555555554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.00  E-value=1.5  Score=45.46  Aligned_cols=74  Identities=15%  Similarity=0.056  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCChHHHHHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV-HDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~-~~~~~al~l~p~~~~~~~~   85 (665)
                      ..+++..|.+++.+|+|++|.+.+..|++.+|+++.++.+++-+...+|+..++. +.+......+|+..-...+
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            4567789999999999999999999999999999999999999999999995544 5555656678887654443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=85.82  E-value=7.3  Score=42.21  Aligned_cols=69  Identities=17%  Similarity=-0.001  Sum_probs=59.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      .|.+++..++..+|++-+.++|+.+|..+..+.-.|..+...++|+.|++..+++.++.|++-.....+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~L  274 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQL  274 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            577777888899999999999999999999999999999999999999999999999999876544433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=85.77  E-value=2.2  Score=48.03  Aligned_cols=70  Identities=13%  Similarity=0.062  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRD--------HLVECLRDCNRAVQI--CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~--------~~~~al~d~~~al~~--~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.+|+-+|.+|....        +...+.+...+++.+  +|..+.+|.-+|......|++++|...|++|+.++|+..
T Consensus       375 ~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~  454 (517)
T PRK10153        375 FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWL  454 (517)
T ss_pred             cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence            4556666666665432        345666777777775  677888998899999999999999999999999999743

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=85.67  E-value=3.9  Score=45.89  Aligned_cols=71  Identities=13%  Similarity=0.040  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.-.+.-.|.-|.++|+++.|+..++.||..-|..+..|.-+|+++..+|++++|...+..+-++|-.+-
T Consensus       369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence            35566667899999999999999999999999999999999999999999999999999999999977664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=85.49  E-value=1.7  Score=44.89  Aligned_cols=68  Identities=9%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             chHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211            9 NLVATLYVNRASVLQKR-DHLVECLRDCNRAVQIC--PSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l-~~~~~al~d~~~al~~~--p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      ...+.++.+.|..|... ++++.|++.+.+|+++=  .+.    .+.+...|..+..+|+|++|++.|++.....
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            44678899999999998 99999999999999871  222    4667888999999999999999999877653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.31  E-value=4.4  Score=41.54  Aligned_cols=67  Identities=13%  Similarity=0.122  Sum_probs=61.6

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ++...++...+.++...++++.+++..++-+..+|.+-++|.+.-.+|+..|+...|+..|+..-++
T Consensus       150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567788889999999999999999999999999999999999999999999999999999877653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=2.2  Score=47.09  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+..|+-.|.=|+-.|++.+|-+.+.+|-.+||.+..||.-.|..+...++.++|+..|..|.++-|..
T Consensus       311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence            456677788888889999999999999999999999999999999999999999999999999987764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=84.45  E-value=3.2  Score=45.94  Aligned_cols=69  Identities=17%  Similarity=0.131  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      -..|.|.++++-+...+|-.-...+|.++..-|-.++-.|.++..|.+.+.|++.|+.|++++|++...
T Consensus       644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC  712 (886)
T ss_pred             cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence            467899999999999999999999999986677788889999999999999999999999999998743

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=84.20  E-value=3  Score=49.63  Aligned_cols=35  Identities=6%  Similarity=-0.088  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .|++.+|.||.++|++++|...|+++++++|+|..
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~  151 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE  151 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH
Confidence            68999999999999999999999999999999864

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=84.13  E-value=4.5  Score=34.10  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=47.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211           20 SVLQKRDHLVECLRDCNRAVQIC-----P----SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        20 ~~~~~l~~~~~al~d~~~al~~~-----p----~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      +-..+.++|.+|++...+.+..-     +    .+.-++..+|.....+|++++|+..++.++++-
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            34578899999999999888662     1    135678899999999999999999999998873

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=83.70  E-value=0.45  Score=50.18  Aligned_cols=66  Identities=14%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ....+|-|.+..|+-+|+|+.|+..-..-|.+...+      -.|+.++|.|+..+|+|+.|++.|+..+.+
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            345688899999999999999999877777764333      357778899999999999999999987654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=82.84  E-value=0.81  Score=30.66  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECL   32 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al   32 (665)
                      -.+.+|.|+|.+|...|++++|+
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhhc
Confidence            36788999999999999999986

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=82.29  E-value=6.8  Score=37.41  Aligned_cols=67  Identities=7%  Similarity=0.027  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ....+|.+.+.++++.+|..-.+...+.+|.  .|+...-.|.++..+|++.+|...|+.++..-|+..
T Consensus       126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            3445666666666666666666666666655  245555556666677777777777776666666544

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.07  E-value=3.8  Score=43.17  Aligned_cols=87  Identities=15%  Similarity=0.087  Sum_probs=61.7

Q ss_pred             ccHHHHHHHHhhhhcceeeccccccCCCCCCCCCCCCCccccccceeEEEeccccccccCCCc-CCcEEEEeCCEEEEEE
Q 048211          326 ASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCL-PNIHAYFLSRTLMIRT  404 (665)
Q Consensus       326 ~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~-PN~~~~f~g~~~~vrA  404 (665)
                      .+......+.+.+.--+|.|.-..+.+..         ..+.+-.+.|-..-|.+-++||.=. -|+...++++.+.+.|
T Consensus       174 ~slEdF~y~~Al~laysfdve~~~s~~~~---------eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva  244 (466)
T KOG1338|consen  174 PSLEDFMYAYALGLAYSFDVEFLLSLDNL---------EEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVA  244 (466)
T ss_pred             cCHHHHHHHHHHHHHHheeeehhcchhhh---------hhhhccccCcccccchhhhhccchhhcccceeccCcceeeee
Confidence            34555556666666667777432111100         1122236678889999999999876 7777778889999999


Q ss_pred             eecCCCCCceeeecCCC
Q 048211          405 TEFVPSGYPLELSYGPQ  421 (665)
Q Consensus       405 ~r~I~~GeeI~isY~~~  421 (665)
                      .|+|++|+|++.+|+..
T Consensus       245 ~r~iekgdev~n~dg~~  261 (466)
T KOG1338|consen  245 DRNIEKGDEVDNSDGLK  261 (466)
T ss_pred             cCCCCCccccccccccC
Confidence            99999999999999854

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.04  E-value=8.4  Score=38.57  Aligned_cols=72  Identities=10%  Similarity=-0.047  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .-.+|-....+.+..++...|..-++..-.-=|+..+.---.|.-+...|+|++|++.|+..++-+|.+...
T Consensus        51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~  122 (289)
T KOG3060|consen   51 IWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI  122 (289)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence            345566667777777777777665554333337777776667888888888888888888888888887643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.56  E-value=8  Score=43.07  Aligned_cols=61  Identities=18%  Similarity=0.116  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------------------CHHHHHHHHHHHHHcCCH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPS-------------------------------YAKAWYRRGKVNVSLENH   62 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-------------------------------~~ka~~r~a~~~~~l~~~   62 (665)
                      +.-=||++++++|+|++|+.-|...++.+.+                               ....+|+.|-++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            4455999999999999999988877654321                               235689999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048211           63 DDAVHDLTIAKN   74 (665)
Q Consensus        63 ~~A~~~~~~al~   74 (665)
                      .+|++.+++|++
T Consensus       192 ~qA~elL~kA~~  203 (652)
T KOG2376|consen  192 NQAIELLEKALR  203 (652)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999944

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.34  E-value=3.9  Score=45.74  Aligned_cols=70  Identities=23%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICP------SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p------~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +-.++.|-|.-+|+.++|..+++.+...+..=|      .++|..-.++-||.+|...+.|++.++.|-+.+|.+.
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence            456788999999999999999999999997633      3578887789999999999999999999999998875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=80.23  E-value=8.4  Score=39.73  Aligned_cols=71  Identities=11%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC---PS---YA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~---p~---~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .....++.+.|..+.++|+|++|++.++++...-   +.   .+ +.+++.+.|+..+|++-.|.+.+++....+|+-
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3467888999999999999999999999998752   21   13 456789999999999999999999999998864

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.11  E-value=5.7  Score=28.42  Aligned_cols=25  Identities=8%  Similarity=0.065  Sum_probs=20.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           50 YRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        50 ~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      +.+|.+|..+|+++.|.+.++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4578888899999999888888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	665
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		5e-12
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		5e-12
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		5e-12
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		6e-12
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		7e-12
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		3e-11
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		1e-09
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		8e-09
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		9e-09
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		1e-05
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-04
3n71_A	490	Crystal Structure Of Cardiac Specific Histone Methy		5e-04

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++++   T ++G G+ +   +  G L+   +P A T+ K  R   C  CL       + C
Sbjct: 6   LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 64
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
           + C +  YCS +C+ +A                                   +P+     
Sbjct: 65  SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 84
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
            HK ECK +    P   P  V L GRV+ K +  +G   +   L    +L  N ++++ +
Sbjct: 85  -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 141
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
            K    +  +V+ +  QH    E+  + + +     L         A  ++  N++    
Sbjct: 142 KK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 185
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
                + C  E   VG+ +Y + SL NHSC PN    F    L++R    +  G  L + 
Sbjct: 186 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 240
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
           Y   +     ++R K L D+Y F C C  C
Sbjct: 241 YLDML--MTSEERRKQLRDQYCFECDCFRC 268

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++++   T ++G G+ +   +  G L+   +P A T+ K  R   C  CL       + C
Sbjct: 4   LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 62
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
           + C +  YCS +C+ +A                                   +P+     
Sbjct: 63  SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 82
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
            HK ECK +    P   P  V L GRV+ K +  +G   +   L    +L  N ++++ +
Sbjct: 83  -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 139
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
            K    +  +V+ +  QH    E+  + + +     L         A  ++  N++    
Sbjct: 140 RK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 183
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
                + C  E   VG+ +Y + SL NHSC PN    F    L++R    +  G  L + 
Sbjct: 184 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 238
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
           Y   +     ++R K L D+Y F C C  C
Sbjct: 239 YLDML--MTSEERRKQLRDQYCFECDCFRC 266

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++++   T ++G G+ +   +  G L+   +P A T+ K  R   C  CL       + C
Sbjct: 4   LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 62
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
           + C +  YCS +C+ +A                                   +P+     
Sbjct: 63  SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 82
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
            HK ECK +    P   P  V L GRV+ K +  +G   +   L    +L  N ++++ +
Sbjct: 83  -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 139
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
            K    +  +V+ +  QH    E+  + + +     L         A  ++  N++    
Sbjct: 140 RK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 183
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
                + C  E   VG+ +Y + SL NHSC PN    F    L++R    +  G  L + 
Sbjct: 184 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 238
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
           Y   +     ++R K L D+Y F C C  C
Sbjct: 239 YLDML--MTSEERRKQLRDQYCFECDCFRC 266

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++++   T ++G G+ +   +  G L+   +P A T+ K  R   C  CL       + C
Sbjct: 5   LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 63
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
           + C +  YCS +C+ +A                                   +P+     
Sbjct: 64  SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 83
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
            HK ECK +    P   P  V L GRV+ K +  +G   +   L    +L  N ++++ +
Sbjct: 84  -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 140
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
            K    +  +V+ +  QH    E+  + + +     L         A  ++  N++    
Sbjct: 141 RK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 184
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
                + C  E   VG+ +Y + SL NHSC PN    F    L++R    +  G  L + 
Sbjct: 185 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 239
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
           Y   +     ++R K L D+Y F C C  C
Sbjct: 240 YLDML--MTSEERRKQLRDQYCFECDCFRC 267

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 132/338 (39%), Gaps = 69/338 (20%)
Query: 112 RVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNE 171
           R S+    ++++   T ++G G+ +   +  G L+   +P A T+ K  R   C  CL  
Sbjct: 32  RGSEFMEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG 91
Query: 172 LPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDF 231
                + C+ C +  YCS +C+ +A                                   
Sbjct: 92  -KEKLMRCSQCRVAKYCSAKCQKKA----------------------------------- 115
Query: 232 YPEDEHIFEHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSH 289
           +P+      HK ECK +    P   P  V L GRV+ K +  +G   +   L    +L  
Sbjct: 116 WPD------HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLES 167
Query: 290 NYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMN 349
           N ++++ + K    +  +V+ +  QH    E+  + + +     L         A  ++ 
Sbjct: 168 NINKLTEDRK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVI 215
Query: 350 SNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVP 409
            N++         + C  E   VG+ +Y + SL NHSC PN    F    L++R    + 
Sbjct: 216 CNSF---------TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIE 266
Query: 410 SGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
            G  L + Y   +     ++R K L D+Y F C C  C
Sbjct: 267 VGEELTICYLDML--MTSEERRKQLRDQYCFECDCFRC 302

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 129/331 (38%), Gaps = 71/331 (21%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIP- 178
           ++++   T ++G G+ +   +  G L+   +P A T+ K  R   C  CL  L  + +  
Sbjct: 5   LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCL--LGKEKLXR 62
Query: 179 CTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHI 238
           C+ C +  YCS +C+ +A                                   +P+    
Sbjct: 63  CSQCRVAKYCSAKCQKKA-----------------------------------WPD---- 83
Query: 239 FEHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSP 296
             HK ECK +    P   P  V L GRV+ K    +G   +   L    +L  N ++++ 
Sbjct: 84  --HKRECKCLKSCKPRYPPDSVRLLGRVVFKLX--DGAPSESEKLYSFYDLESNINKLTE 139
Query: 297 ESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQS 356
           + K    +  +V  +  QH    E+  + + +     L         A  ++  N++   
Sbjct: 140 DRK--EGLRQLVXTF--QHFXREEIQ-DASQLPPAFDLFE-------AFAKVICNSF--- 184
Query: 357 DHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLEL 416
                 + C  E   VG+ +Y + SL NHSC PN    F    L++R    +  G  L +
Sbjct: 185 ------TICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTI 238
Query: 417 SYGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
            Y   +   +  +R K L D+Y F C C  C
Sbjct: 239 CYLDXLXTSE--ERRKQLRDQYCFECDCFRC 267

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 124/335 (37%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           L+   +P KGRG+ +      G L+ S   YA  ++ + R  HC YC       +  C  
Sbjct: 9   LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC+  C+ +       + PM                                  H
Sbjct: 68  CKQAFYCNVECQKE-------DWPM----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
           K EC      G +W    PS+ V L  R+L K  + +        LL   E   +  ++ 
Sbjct: 87  KLECSPMVVFGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVKEFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
            E K  ++S I A+   Y    S   E P N +    +V+L +Q+  N   I        
Sbjct: 143 NEKKDLIQSDIAALHHFY----SKHLEFPDNDS----LVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
            + + +S           +G AI+   +L NHSC PN+   +      +R  + +  G  
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
           +  SY   +  +  +DR   L D Y F C+C  C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECQECT 268

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 123/335 (36%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           L+   +P KGRG+ +      G L+ S   YA  ++ + R  HC YC       +  C  
Sbjct: 9   LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC+  C+ +       + PM                                  H
Sbjct: 68  CKQAFYCNVECQKE-------DWPM----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
           K EC      G +W    PS+ V L  R+L K  + +        LL   E   +  ++ 
Sbjct: 87  KLECSPMVVFGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVKEFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
            E K  ++S I A+   Y    S     P N +    +V+L +Q+  N   I        
Sbjct: 143 NEKKDLIQSDIAALHHFY----SKHLGFPDNDS----LVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
            + + +S           +G AI+   +L NHSC PN+   +      +R  + +  G  
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
           +  SY   +  +  +DR   L D Y F C+C  C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECQECT 268

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 123/335 (36%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           L+   +P KGRG+ +      G L+ S   YA  ++ + R  HC YC       +  C  
Sbjct: 9   LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC+  C+ +       + PM                                  H
Sbjct: 68  CKQAFYCNVECQKE-------DWPM----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
           K EC      G +W    PS+ V L  R+L K  + +        LL   E   +  ++ 
Sbjct: 87  KLECSPMVVFGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVKEFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
            E K  ++S I A+   Y    S     P N +    +V+L +Q+  N   I        
Sbjct: 143 NEKKDLIQSDIAALHHFY----SKHLGFPDNDS----LVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
            + + +S           +G AI+   +L NHSC PN+   +      +R  + +  G  
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
           +  SY   +  +  +DR   L D Y F C+C  C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECQECT 268

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 120/335 (35%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           L+   +  KGRG+ +      G L+ S   YA  ++   R  HC  C       +  C  
Sbjct: 9   LERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC   C+ +       + P+                                  H
Sbjct: 68  CKQAFYCDVECQKE-------DWPL----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
           K EC      G +W    PS+ V L  R+L K  + +        LL   E   +  ++ 
Sbjct: 87  KLECSSMVVLGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVREFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
            E K  ++S I A+   Y    S   E P +    S +V+L +Q+  N   I        
Sbjct: 143 NEKKDLIQSDIAALHQFY----SKYLEFPDH----SSLVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
            + + +S           +G AI+   +L NHSC PN+   +      +R  + +  G  
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
           +  SY   +  +  +DR   L D Y F C+C  C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECRECT 268

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
           Y NRA+ L K     E + DCN+A++  P++ +A+ R+    ++++ +  A+  L  A+ 
Sbjct: 41  YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100
Query: 75  RESSL 79
           +++ +
Sbjct: 101 KDAEV 105

>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/353 (19%), Positives = 118/353 (33%), Gaps = 85/353 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           ++  T+  KGRG+ +  +     ++ +E  Y+  +        CH C          C  
Sbjct: 9   VEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKR-QEKLHRCGQ 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC R C+  A                                            H
Sbjct: 68  CKFAHYCDRTCQKDA-----------------------------------------WLNH 86
Query: 242 KHECKGVHWPVILPSD-VVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKL 300
           K+EC  +     +P++ + LA R++ + V++ G  +    L+   +L ++      E + 
Sbjct: 87  KNECAAIKKYGKVPNENIRLAARIMWR-VEREGTGLTEGCLVSVDDLQNHVEHFGEEEQK 145
Query: 301 ESHIYAIVLL-YCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV 359
           E  +     L Y    S  F +      +S +  +I             N N +  SD  
Sbjct: 146 ELRVDVDTFLQYWPPQSQQFSMQY----ISHIFGVI-------------NCNGFTLSDQR 188
Query: 360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYF----------LSRTLM---IRTTE 406
              +        VG+ I+    L NH C PN    F          +  T M   +R   
Sbjct: 189 GLQA--------VGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG 240
Query: 407 FVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINA 459
            +  G  L +SY   +     ++R + L+ +Y F C C  C +    DL + A
Sbjct: 241 KISEGEELTVSYIDFLHL--SEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAA 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	665
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	3e-39
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-35
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	5e-32
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-17
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-16
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-15
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-14
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	9e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-04

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score =  149 bits (376), Expect = 3e-39
 Identities = 80/527 (15%), Positives = 147/527 (27%), Gaps = 119/527 (22%)

Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           L+   +  KGRG+ +      G L+ S   YA  ++   R  HC  C          C  
Sbjct: 9   LERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEG-LSKCGR 67

Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC   C+ +                                             H
Sbjct: 68  CKQAFYCDVECQKEDWPL-----------------------------------------H 86

Query: 242 KHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESK 299
           K EC  +        PS+ V     ++   + +        LL   E   +  ++  E K
Sbjct: 87  KLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKK 146

Query: 300 LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV 359
                    L         F         S +V+L +Q+  N   I              
Sbjct: 147 DLIQSDIAALHQFYSKYLEFP------DHSSLVVLFAQVNCNGFTI-------------- 186

Query: 360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYG 419
                   E   +G AI+   +L NHSC PN+   +      +R  + +  G  +  SY 
Sbjct: 187 -----EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYI 241

Query: 420 PQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNC 479
             +  +  +DR   L D Y F C+C  C+  +     +       P     + D      
Sbjct: 242 DLL--YPTEDRNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRD-----M 294

Query: 480 EKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDR 539
            +  R  +    +        ++ ++                          C       
Sbjct: 295 VRYARNVIEEFRRAKHYKSPSELLEI--------------------------CELS---- 324

Query: 540 DLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEK 599
             E   +  +++ +Y+  +              +    ++      L  Y + I +   K
Sbjct: 325 -QEKMSSVFEDSNVYMLHMMYQ----------AMGVCLYMQDWEGAL-KYGQKIIKPYSK 372

Query: 600 LYGHNHIVIGYELVKLSSIQLSLDDH-NAVDTISRLAAIFLHYFGSH 645
            Y    + +    +KL  + + L++       + +  AI     G  
Sbjct: 373 HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score =  138 bits (348), Expect = 2e-35
 Identities = 86/526 (16%), Positives = 152/526 (28%), Gaps = 124/526 (23%)

Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
           ++++   T ++G G+ +   +  G L+   +P A T+ K  R   C  CL       + C
Sbjct: 5   LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEK-LMRC 63

Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
           + C +  YCS +C+                                        +     
Sbjct: 64  SQCRVAKYCSAKCQK---------------------------------------KAWPDH 84

Query: 240 EHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESK 299
           + + +C     P   P  V L GRV+ K +       +       LE + N      +  
Sbjct: 85  KRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEG 144

Query: 300 LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV 359
           L   +         +     +LP        +    +++  NS  I              
Sbjct: 145 LRQLVMTFQHFMREEIQDASQLP----PAFDLFEAFAKVICNSFTI-------------- 186

Query: 360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYG 419
                C  E   VG+ +Y + SL NHSC PN    F    L++R    +  G  L + Y 
Sbjct: 187 -----CNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYL 241

Query: 420 PQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNC 479
             +     ++R K L D+Y F C C  C   +    ++     V       +     L  
Sbjct: 242 DML--MTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKA 299

Query: 480 EKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDR 539
             +  + L                                  +  S   P   +      
Sbjct: 300 HWKWEQVLAMCQAI---------------------------ISSNSERLPDINIYQLKVL 332

Query: 540 DLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILEK 599
           D         +A I +  L++A+                          Y     E    
Sbjct: 333 DCAM------DACINLGLLEEAL-------------------------FYGTRTMEPYRI 361

Query: 600 LYGHNHIVIGYELVKLSSIQLSLDDHN-AVDTISRLAAIFLHYFGS 644
            +  +H V G +++K+  +QL       A+  +     I     G 
Sbjct: 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score =  129 bits (324), Expect = 5e-32
 Identities = 83/537 (15%), Positives = 153/537 (28%), Gaps = 130/537 (24%)

Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
           ++  T+  KGRG+ +  +     ++ +E  Y+  +        CH C          C  
Sbjct: 9   VEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQE-KLHRCGQ 67

Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
           C    YC R C+                                          +    H
Sbjct: 68  CKFAHYCDRTCQ-----------------------------------------KDAWLNH 86

Query: 242 KHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKLE 301
           K+EC  +     +P++ +     ++  V++ G  +    L+   +L ++      E + E
Sbjct: 87  KNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKE 146

Query: 302 SHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSS 361
             +     L                S+  +  +   I  N   +                
Sbjct: 147 LRVDVDTFLQYWPPQS------QQFSMQYISHIFGVINCNGFTLSDQRGLQ--------- 191

Query: 362 GSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYF-------------LSRTLMIRTTEFV 408
                     VG+ I+    L NH C PN    F                 + +R    +
Sbjct: 192 ---------AVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKI 242

Query: 409 PSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCP 468
             G  L +SY         ++R + L+ +Y F C C  C +    DL + A     P+  
Sbjct: 243 SEGEELTVSYIDF--LHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKEDPKPSQ- 299

Query: 469 GVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYG 528
                  +    +  +  L  + +  S   + +V KL                       
Sbjct: 300 -----EVVKEMIQFSKDTLEKIDKARSEGLYHEVVKL----------------------- 331

Query: 529 PGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHA 588
              C +C     LE       +  +Y+ RL               +   +L       H 
Sbjct: 332 ---CREC-----LEKQEPVFADTNLYVLRLLSI----------ASEVLSYLQAYEEASH- 372

Query: 589 YNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDD-HNAVDTISRLAAIFLHYFGS 644
           Y + + +   KLY HN+  +G  +++                 I +  AI L   G 
Sbjct: 373 YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 76.6 bits (189), Expect = 8e-17
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  Y NRA    K     + L DC RA+++     KA +  G+  + +E++D+A+ +L  
Sbjct: 43  AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102

Query: 72  A--KNRESSLAGKKQIESELKII 92
           A    +E  L     I S L+I 
Sbjct: 103 AYSLAKEQRLNFGDDIPSALRIA 125

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 19/68 (27%), Positives = 29/68 (42%)

Query: 5   DKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD 64
           D      A L+ NRA+   K +   +   + ++A++      KA YRR +    L   D 
Sbjct: 58  DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQ 117

Query: 65  AVHDLTIA 72
           AV DL   
Sbjct: 118 AVLDLQRC 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 73.8 bits (182), Expect = 7e-16
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHD--- 68
           A  + NRA+   K  +    ++DC RA+ I P+Y+KA+ R G    SL  H +AV     
Sbjct: 46  AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKK 105

Query: 69  -LTIAKNRESSLAGKKQIESELK 90
            L +  + E+  +  K  E +L+
Sbjct: 106 ALELDPDNETYKSNLKIAELKLR 128

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  Y NRA+ L K     E + DCN+A++  P++ +A+ R+    ++++ +  A+  L  
Sbjct: 38  ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 97

Query: 72  AKNRESSLAG---KKQIESELK 90
           A+ +++ +      ++I+    
Sbjct: 98  ARTKDAEVNNGSSAREIDQLYY 119

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 2   DANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
               +       LY N +        L E     +  ++   +  KA +RR K  ++   
Sbjct: 53  PEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK 112

Query: 62  HDDAVHDLTIAKNRESSLAGKKQIESELKII 92
            D+A  DL +      +      +  E+KI+
Sbjct: 113 LDEAEEDLKLLLRNHPAA--ASVVAREMKIV 141

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 2   DANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
              DK +N+  +  +N A+   K     + +   ++ ++I  +  KA Y+ G  N+    
Sbjct: 78  ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 62  HDDAVHDLTIAKNRESSLAGKKQIESELKII 92
            ++A  +L  A +   +      I +  ++ 
Sbjct: 138 LEEAKENLYKAASLNPN---NLDIRNSYELC 165

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 72.1 bits (177), Expect = 6e-15
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                NRA+         +   D   A  + P Y+KAW R G     + ++  A      
Sbjct: 45  PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104

Query: 72  AKNRESSLAG---KKQIESELKIILDQSNRTSNK 102
               E +      K+ +E   K  ++++NR +  
Sbjct: 105 GIEAEGNGGSDAMKRGLE-TTKRKIEEANRGAEP 137

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 72.0 bits (177), Expect = 7e-15
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
           ++ N  +    A  Y NR+    + +     L D  RA+++   Y K +YRR   N++L 
Sbjct: 40  IELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNL 111
               A+ D       +      K    E   I+ Q            K ++
Sbjct: 96  KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A LY NRA+ L K       L DC+  +++   + K + R+    V++     A      
Sbjct: 47  AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106

Query: 72  A 72
           A
Sbjct: 107 A 107

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  Y NRA    K     + L DC RA+++     KA +  G+  + +E++D+A+ +L  
Sbjct: 38  AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97

Query: 72  A--KNRESSLAGKKQIESELKI 91
           A    +E  L     I S L+I
Sbjct: 98  AYSLAKEQRLNFGDDIPSALRI 119

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A LY NRA+   K       L+DC   +Q+ P++ K + R+     +++++  A+     
Sbjct: 50  AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 109

Query: 72  A 72
           A
Sbjct: 110 A 110

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
            LY NR++   K+    +   D  + V + P + K + R+      L   ++A      
Sbjct: 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97

Query: 72 A 72
           
Sbjct: 98 G 98

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 5   DKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD 64
            K + L    ++N A    K       +  CN+A+++  +  K   RRG+ ++++ + + 
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248

Query: 65  AVHDLTIAKNRESSLAGKKQIESELKII 92
           A  D         +    K  +++L + 
Sbjct: 249 ARADFQKVLQLYPN---NKAAKTQLAVC 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 3e-13
 Identities = 78/558 (13%), Positives = 163/558 (29%), Gaps = 154/558 (27%)

Query: 201 FKNCPMERNINDSVFDNLEEYISQITLDNDFYP-EDE--HIFEHKHECKGVHWPVILPSD 257
           F+    +    D +    + ++     + D    +D    I   K E   +   ++    
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVD----NFDCKDVQDMPKSILS-KEEIDHI---IMSKDA 60

Query: 258 VVLAGRVL--VKSVQKNGVSMDVPNLLGKLELSHNY----SQVSPESKLESHIYAIVLLY 311
           V    R+   + S Q+  V   V  +L       NY    S +  E +  S +     +Y
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRI-----NYKFLMSPIKTEQRQPSMMTR---MY 112

Query: 312 CLQHS--YGFELPINGASVSQVVILISQIRVNSLAIVRMNSNN--YGQSDHVSSGSTCTV 367
             Q    Y         +VS++     ++R  +L  +R   N    G    + SG T   
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQ-PYLKLR-QALLELRPAKNVLIDGV---LGSGKTW-- 165

Query: 368 EQVRVGLAIYTAGSLFNHSCLPNIHAYFLS-------RTLMIR----TTEFVPSGYPL-E 415
                 +A+    S      +     ++L+        T++        +  P+     +
Sbjct: 166 ------VALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 416 LSYGPQVGQWDCKDRLK--FLEDEYSFRCQCSGCSEL----NTSDL-VINAFCCVDPNCP 468
            S   ++     +  L+       Y   C       L    N  +    NAF   + +C 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYE-NC-------LLVLLNVQNAKAWNAF---NLSCK 267

Query: 469 GVVL--DNSILNCEK-QKRKHLPAVPQ------------------CSSSA-PHLQVGKLS 506
            ++      + +        H+                       C     P  +V   +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTN 326

Query: 507 SDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDR---DLESSYATVDEA------------ 551
              + ++A  + +       +          D+    +ESS   ++ A            
Sbjct: 327 PRRLSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 552 --------------WIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEIL 597
                         W  + +    ++  ++ +  L++       + SI   Y +   ++ 
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLE 440

Query: 598 EKLYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSH------AE--TM 649
            +   H  IV  Y + K      + D  +       L   F  + G H       E  T+
Sbjct: 441 NEYALHRSIVDHYNIPK------TFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 650 FPHLL----FLQREALKL 663
           F  +     FL++   K+
Sbjct: 493 FRMVFLDFRFLEQ---KI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 101/667 (15%), Positives = 188/667 (28%), Gaps = 212/667 (31%)

Query: 83  KQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPE 142
           K ++   K IL      S + + H    +   D          T   K   +  ++   E
Sbjct: 36  KDVQDMPKSIL------SKEEIDHI---IMSKDAVSGTLRLFWTLLSKQEEMVQKF--VE 84

Query: 143 GSLVHSEEPY---AVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQ 199
             L      Y      I    R+                  S    +Y  +R R     Q
Sbjct: 85  EVL---RINYKFLMSPIKTEQRQP-----------------SMMTRMYIEQRDRLYNDNQ 124

Query: 200 VFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVV 259
           VF    + R           +   ++          + + E +              +V+
Sbjct: 125 VFAKYNVSR----------LQPYLKLR---------QALLELRPA-----------KNVL 154

Query: 260 LAG------RVLVKSV-QKNGVSMDVPNLLGKLELSHNYSQVSPES---KLESHIYAIVL 309
           + G        +   V     V   +   +  L L +     SPE+    L+  +Y I  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQKLLYQIDP 211

Query: 310 LYCLQHSYGFELPINGASVSQVV--ILISQIRVNSLAIVR------------------MN 349
            +  +  +   + +   S+   +  +L S+   N L ++                   + 
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 350 SNNYGQSDHVSSGSTC--TVEQVRVGLAIYTAGSLF------NHSCLP----NIHAYFLS 397
           +     +D +S+ +T   +++   + L      SL           LP      +   LS
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 398 RTLMIRTTEFVPSGYPLELSYGPQVGQWD-------CKDRLKFLEDEYSFRCQCSGCSEL 450
              +I   E +  G          V             + L+  E    F          
Sbjct: 332 ---II--AESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--------- 376

Query: 451 NTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYI 510
               L +  F     + P ++L  S++  +               S   + V KL     
Sbjct: 377 ---RLSV--FP-PSAHIPTILL--SLIWFDV------------IKSDVMVVVNKLHK--- 413

Query: 511 GLVAYLLLEENNRTSRYG-PG----YCLKCGSDRDLE----SSYA-------------TV 548
               Y L+E+  + S    P       +K  ++  L       Y               +
Sbjct: 414 ----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 549 DEAWI-YI-RRLQDAIISKEIS--RAVLLDASRFLGL-LRSILHAYNK--SIAEILE--K 599
           D+ +  +I   L++    + ++  R V LD  RFL   +R    A+N   SI   L+  K
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 600 LYGHNHIVIGYELVKLSSIQLSLDDHNAVDTISRLAAIFLHYFGSHAETMF--PHLLFLQ 657
            Y   +I                D+    +   RL    L +     E +    +   L+
Sbjct: 529 FYK-PYIC---------------DNDPKYE---RLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 658 REALKLP 664
             AL   
Sbjct: 570 I-ALMAE 575

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 86/603 (14%), Positives = 166/603 (27%), Gaps = 215/603 (35%)

Query: 19  ASVLQKRDHLVEC----------LRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV-H 67
             V     + V+C          L++CN    +     K  Y+      S  +H   +  
Sbjct: 168 LDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 68  DLTIAKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDESVQVQLQC--- 124
            +   +     L   K  E+ L ++L          VQ+        +      L C   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL-LVLLN--------VQN-AKAWNAFN------LSCKIL 269

Query: 125 VTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLN----ELPADAIPCT 180
           +TT  K   +T        + + S + +++T++    ++     L+    +LP +     
Sbjct: 270 LTTRFKQ--VTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---- 322

Query: 181 SCSI-PLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
             +  P   S                        + +++ + ++      D +   +H+ 
Sbjct: 323 -LTTNPRRLS-----------------------IIAESIRDGLATW----DNW---KHVN 351

Query: 240 EHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS--PE 297
             K                     ++  S+          N+L   E    + ++S  P 
Sbjct: 352 CDKLT------------------TIIESSL----------NVLEPAEYRKMFDRLSVFPP 383

Query: 298 SKLESHIYAIVL--LYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQ 355
           S   +HI  I+L  ++                +   V+++         + +        
Sbjct: 384 S---AHIPTILLSLIWF-------------DVIKSDVMVVVNKLHKYSLVEK-QPKESTI 426

Query: 356 SDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLE 415
           S                 + +     L N      +H   +               Y + 
Sbjct: 427 SIP--------------SIYLELKVKLEN---EYALHRSIVDH-------------YNIP 456

Query: 416 LSYGPQVGQWDCKDRLKFLEDEYSFRCQCSG--CSELNTSDLVINAFCCVDPNCPGVVLD 473
            ++       D  D +    D+Y +     G     +   + +   F         V LD
Sbjct: 457 KTF-------DSDDLIPPYLDQYFY--SHIGHHLKNIEHPERM-TLF-------RMVFLD 499

Query: 474 NSILNCEKQK-RKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGPGYC 532
              L   +QK R    A     S    LQ  K    YI                      
Sbjct: 500 FRFL---EQKIRHDSTAWNASGSILNTLQQLKFYKPYI---------------------- 534

Query: 533 LKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKS 592
             C +D   E              RL +AI+         L  S++  LLR  L A +++
Sbjct: 535 --CDNDPKYE--------------RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

Query: 593 IAE 595
           I E
Sbjct: 579 IFE 581

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 65.0 bits (159), Expect = 7e-13
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICP-------SYAKAWYRRGKVNVSLENHDD 64
            T   N+A+V  ++    +C   C +A+++           AKA+ R G      E + D
Sbjct: 38  MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKD 97

Query: 65  AVHDLTIAKNRESSLAGKKQIESELKIILDQ 95
           A+H    +     +    K+ +   KI+ +Q
Sbjct: 98  AIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ 128

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 17/93 (18%), Positives = 35/93 (37%)

Query: 6   KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDA 65
                             K +  VE +R C+  +Q+ P    A   R +  +  E +D+A
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348

Query: 66  VHDLTIAKNRESSLAGKKQIESELKIILDQSNR 98
           + D   A+    +    ++   + + +L QS +
Sbjct: 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 17/79 (21%), Positives = 30/79 (37%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y  RA+V          L D  + +Q+   +  A  +RG + +     D+A  D   
Sbjct: 60  YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119

Query: 72  AKNRESSLAGKKQIESELK 90
                 S   +K+ +S+L 
Sbjct: 120 VLKSNPSENEEKEAQSQLI 138

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A L   RA    K     + + D   A ++     +A+Y+   +   L +H+ ++ ++  
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236

Query: 72  A 72
            
Sbjct: 237 C 237

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 8/58 (13%), Positives = 20/58 (34%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
             ++A            +   ++ +++C   A+    R +  +       A+ DL  A
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
          ++     L     L + L   + AV   P    A+YRR  V +++     A+ DLT  
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 19/66 (28%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
             +RA      +   E ++D   A +   +  +      K    L+      +   +   
Sbjct: 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391

Query: 75  RESSLA 80
           R +   
Sbjct: 392 RNAKKQ 397

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 67.4 bits (164), Expect = 3e-12
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 2   DANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
              D    +    ++N A+ L K     E +  CN  +       KA +RRGK    L  
Sbjct: 220 KYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ 279

Query: 62  HDDAVHDLTIAKNRESSLAGKKQIESELKII 92
            D A  D   A+         K I  EL+ +
Sbjct: 280 MDSARDDFRKAQKYAPD---DKAIRRELRAL 307

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 2   DANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
           + +  +                K +  VE +R C+  +Q+ P    A   R +  +  E 
Sbjct: 264 EPSVAEYT--VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321

Query: 62  HDDAVHDLTIAK----NRESSLAGKKQIESELK 90
           +D+A+ D   A+    N +    G ++ +  LK
Sbjct: 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 17/79 (21%), Positives = 29/79 (36%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y  RA+V          L D  + + +   +  A  +RG + +     D+A  D   
Sbjct: 37  YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96

Query: 72  AKNRESSLAGKKQIESELK 90
                 S   +K+ ES+L 
Sbjct: 97  VLKSNPSEQEEKEAESQLV 115

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
          ++     L     L + L   + AV   P    A+YRR  V +++     A+ DLT  
Sbjct: 6  HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 8/58 (13%), Positives = 20/58 (34%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
             ++A            +   ++ +++C   A+    R +  +       A+ DL  A
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A L   RA    K     + + D   A ++     +A+Y+   +   L +H+ ++ ++  
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213

Query: 72  A 72
            
Sbjct: 214 C 214

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 7/47 (14%), Positives = 15/47 (31%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
             +RA      +   E ++D   A +   +  +      K    L+ 
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 4/62 (6%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYA----KAWYRRGKVNVSLENHDDAVHDLT 70
            +  A  L +     +        ++  PS A    ++  R        E   +A+   +
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296

Query: 71  IA 72
             
Sbjct: 297 EV 298

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 4/73 (5%), Positives = 19/73 (26%), Gaps = 12/73 (16%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVN------------VSL 59
              +   +++  +       L +    +++   + + +    +V             +  
Sbjct: 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247

Query: 60  ENHDDAVHDLTIA 72
             + DA       
Sbjct: 248 GRYTDATSKYESV 260

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-------YAKAWYRRGKVNVSLENHDD 64
            T Y N+A+V  +     EC++ C +AV++           AKA  R G       +   
Sbjct: 42  ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL 101

Query: 65  AVHD----LTIAKNRESSLAGKKQIE 86
           AV      L+  ++ E  +   K++E
Sbjct: 102 AVQWFHRSLSEFRDPE-LVKKVKELE 126

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             Y N ++       L + +    +A+++ P Y+K   RR   N  L    DA+ DL++
Sbjct: 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98

Query: 72 A 72
           
Sbjct: 99 L 99

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y+  A ++  R+   E     ++A+++  + +  +Y RG++N  L+N+D A  D   
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329

Query: 72  A 72
           A
Sbjct: 330 A 330

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 10/69 (14%), Positives = 24/69 (34%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y+  A +  + +   +C    + A +  P   +      ++     + D A+    +
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397

Query: 72  AKNRESSLA 80
           A   E+ L 
Sbjct: 398 AIELENKLD 406

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 12  ATLYVNRASVLQKRDHLV---------ECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH 62
             +YV  A ++ K   L          E      +A ++ P   +A     ++ +  E+ 
Sbjct: 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI 465

Query: 63  DDAVHDLTIA 72
           D+A+     +
Sbjct: 466 DEAITLFEES 475

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 8/61 (13%), Positives = 24/61 (39%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           +++Y +R  +     +  +  +D ++A ++ P     + +   +       DD     + 
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363

Query: 72  A 72
           A
Sbjct: 364 A 364

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 9/85 (10%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 1   MDANDKDRNL---VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNV 57
           +D N++D  L   +A    +       ++  +    D  +A+++ P    ++     +  
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMA 281

Query: 58  SLENHDDAVHDLT--IAKNRESSLA 80
              +  +  +     +  +  +S  
Sbjct: 282 DRNDSTEYYNYFDKALKLDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKV---------NVSLENH 62
             +    A +L  ++   + L+  + A+++       +     +         N ++EN 
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431

Query: 63  DDAVHDLTIA 72
            +A + L  A
Sbjct: 432 IEATNLLEKA 441

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  Y NRA+ L K     E + DCN+A++  P++ +A+ R+    ++++ +  A+  L  
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232

Query: 72  A 72
           A
Sbjct: 233 A 233

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 10/89 (11%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
            T   NRA+   ++      +   N AV+        +    K    + N    + DL  
Sbjct: 38  ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97

Query: 72  AK----------NRESSLAGKKQIESELK 90
                            L   +  E ELK
Sbjct: 98  TIEYYQKSLTEHRTADILTKLRNAEKELK 126

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 7/58 (12%), Positives = 17/58 (29%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
                     +      ++     ++  P  A+ +  R      L +  +A+ D   A
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
               A +L K  +  + L+       + P  A+     GK   +  +  +AV   T  
Sbjct: 108 EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 6/58 (10%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           Y   +    +  +    L D  + ++         +R   +   L N +  +      
Sbjct: 75  YKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAE 131

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 5/46 (10%), Positives = 11/46 (23%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
           Y+ +A+           L   + A             R    +  +
Sbjct: 210 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             Y N+A  L K     + ++ C + ++   +      R  K+   LE    AV  + I
Sbjct: 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS-KLQYRLELAQGAVGSVQI 96

Query: 72 A 72
           
Sbjct: 97 P 97

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y N ++       L + +    +A++I P ++KA  RR   N SL N  DA+ DL++
Sbjct: 59  PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118

Query: 72  AKNRESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNL 111
                    G        + +  Q+ +  N+ +   +   
Sbjct: 119 LSLNG-DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT- 70
              Y+  A  L  +++  E  +   +AV + P Y   +Y RG++   L+++ +A  D   
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335

Query: 71  -IAKNRESSLA 80
             + N E+   
Sbjct: 336 AQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 10/69 (14%), Positives = 24/69 (34%)

Query: 4  NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHD 63
          +   R   A    NR +      +  E ++    A+++ P+    +       +S  + +
Sbjct: 17 SPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLE 76

Query: 64 DAVHDLTIA 72
            +   T A
Sbjct: 77 KVIEFTTKA 85

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 13/66 (19%), Positives = 22/66 (33%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
           Y+  A +L K+    E     N      P+  +      ++     + D A+    IAK 
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

Query: 75  RESSLA 80
            E    
Sbjct: 407 LEEVQE 412

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 6/71 (8%), Positives = 15/71 (21%), Gaps = 2/71 (2%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT- 70
              Y +R  +            D  +A  + P     + +   +        ++      
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369

Query: 71  -IAKNRESSLA 80
              K       
Sbjct: 370 TKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 16/77 (20%)

Query: 12  ATLYVNRASVLQKRDHLV----------------ECLRDCNRAVQICPSYAKAWYRRGKV 55
             ++V    ++ K   L                   ++   +A ++ P   +A     ++
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471

Query: 56  NVSLENHDDAVHDLTIA 72
            + +E  D+A+     +
Sbjct: 472 KLQMEKIDEAIELFEDS 488

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT- 70
           A            +++L++       ++ + P+   ++          EN  +       
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301

Query: 71  -IAKNRESSLA 80
            +  N E    
Sbjct: 302 AVDLNPEYPPT 312

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
                K + +  +  +N  +   K       +  C  A++I PS  KA YRR +    L+
Sbjct: 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLK 321

Query: 61  NHDDAVHDLTIAKNRESSLAGKKQIESELK 90
            +D A+ DL  A+         K I++EL 
Sbjct: 322 EYDQALADLKKAQEIAP---EDKAIQAELL 348

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDL-T 70
           A  Y NR+    + +     L D  RA+++   Y K +YRR   N++L     A+ D  T
Sbjct: 40  AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 99

Query: 71  IAKNRESSLAGKKQIESELKII 92
           + K +      K + +   KI+
Sbjct: 100 VVKVKPHDKDAKMKYQECNKIV 121

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 58.2 bits (140), Expect = 5e-09
 Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 5   DKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD 64
               + +   ++N A    K     + +  C++A+ +  +  K  YRRG+  + +   + 
Sbjct: 310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 369

Query: 65  AVHDLTIAKNRESSLAGKKQIESELKII 92
           A  D              K    ++ + 
Sbjct: 370 AKGDFEKVLEVNPQ---NKAARLQISMC 394

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
          + +  N   +     ++ E  +   R++      A A+++RG +    E +D A+ DL  
Sbjct: 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96

Query: 72 A 72
          A
Sbjct: 97 A 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
            N   +   +      L   +    +   +++  +  G +   L+N  +A    T +
Sbjct: 9  LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 63

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 8/84 (9%), Positives = 30/84 (35%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  ++   +  Q      + L+  +    +  +  +  +   + ++ L + D A      
Sbjct: 52  ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS 111

Query: 72  AKNRESSLAGKKQIESELKIILDQ 95
           A+   ++    + + +    +L+ 
Sbjct: 112 ARALAAAQPAHEALAARAGAMLEA 135

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 2  DANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
                 + +  LY        +     +  +       +    A+ +   G    SL  
Sbjct: 9  MLRGLSEDTLEQLY-ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67

Query: 62 HDDAVHDLTIA 72
          ++ A+   +  
Sbjct: 68 YEQALQSYSYG 78

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             L  N   V +K     E L    +A+ + P  A  +   G ++  + N ++AV     
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295

Query: 72  A 72
           A
Sbjct: 296 A 296

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 8/58 (13%), Positives = 15/58 (25%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
            +         ++     R  ++A+ I P      +  G V         A      A
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 6/58 (10%), Positives = 12/58 (20%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           ++             + +     A Q+           G       N   A    + A
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 8/61 (13%), Positives = 19/61 (31%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  + N     +K       +   N+ + +  + A        V +  +    A+  L  
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

Query: 72  A 72
           +
Sbjct: 576 S 576

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 5/58 (8%), Positives = 16/58 (27%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           Y+       +  +++        +  +           G V  +  +   A++    A
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 7/69 (10%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQIC-------PSYAKAWYRRGKVNVSLENHDD 64
             L      V   +  +   +     A+ +          +A  W   G     L+ +D 
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534

Query: 65  AVHDLTIAK 73
           A+  L    
Sbjct: 535 AIDALNQGL 543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 7/58 (12%), Positives = 17/58 (29%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           ++  A          + +     A ++       +   G  ++ L N   A   L  +
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 9/55 (16%), Positives = 19/55 (34%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
           A  ++         + + E  R  +++  + P +  AW            HD A+
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHD--- 68
             L         + +     L     A+   P+Y+ AW   GK      +   A      
Sbjct: 19  MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78

Query: 69  -LTIAKNRESSLAGKKQIESELKIILDQSNR 98
            L  A++R     G +Q+  EL++ L +  R
Sbjct: 79  GLAAAQSR-----GDQQVVKELQVFLRRLAR 104

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 5   DKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD 64
           D+  +    L++NRA++ +  +   E L   ++A  + P++ +   R  ++   L     
Sbjct: 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310

Query: 65  AV 66
            +
Sbjct: 311 LL 312

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 12  ATLYVNRASVLQKR-DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT 70
           A   + +   L    D+  E     ++AV++ P   +AW + G+V     +   A    +
Sbjct: 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161

Query: 71  IA 72
            A
Sbjct: 162 GA 163

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y N A+ L+++  + E     N A+++CP++A +      +     N ++AV     
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 72  A 72
           A
Sbjct: 331 A 331

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             +  +  ++L+    L E      +A++  P++A AW   G V  +      A+H    
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 72  A 72
           A
Sbjct: 195 A 195

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  Y N  +V ++R  L E +     A+++ P +   +       V+  + + AV     
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126

Query: 72  A 72
           A
Sbjct: 127 A 127

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 12/61 (19%), Positives = 22/61 (36%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y+N  +VL++       +    RA+ + P++A        V       D A+     
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 72  A 72
           A
Sbjct: 263 A 263

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 13/61 (21%), Positives = 22/61 (36%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  + N   V   +  +   +    +AV + P++  A+   G V       D AV     
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 72  A 72
           A
Sbjct: 229 A 229

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 10/61 (16%), Positives = 23/61 (37%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A ++ N A V  ++  +   +    RA+++ P +  A+           +  +A      
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 72  A 72
           A
Sbjct: 297 A 297

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 11/61 (18%), Positives = 21/61 (34%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
              Y+N A+ L     +   ++    A+Q  P         G +  +L   ++A      
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 72  A 72
           A
Sbjct: 161 A 161

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A    N A++ +++ ++ E +R   +A+++ P +A A      V        +A+     
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364

Query: 72  A 72
           A
Sbjct: 365 A 365

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 8/58 (13%), Positives = 16/58 (27%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           +  A    +        R C +  +  P           ++      D + H  T+A
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 10/61 (16%), Positives = 21/61 (34%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
            + +  +S+  +   L         A++  P  A+A+   G V        +A+     
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

Query: 72 A 72
          A
Sbjct: 93 A 93

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
             +     Q  + +   L    +A  + P    A    G    +LE+    +     A
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPA 472

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 9/61 (14%), Positives = 16/61 (26%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A         +LE     +  L  
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369

Query: 72  A 72
           A
Sbjct: 370 A 370

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 10/61 (16%), Positives = 17/61 (27%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A    G    +LE     +  L  
Sbjct: 174 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233

Query: 72  A 72
           A
Sbjct: 234 A 234

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 9/58 (15%), Positives = 16/58 (27%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
             +     Q  + +   L    +A  + P    A         +LE     +  L  A
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQA 302

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 10/61 (16%), Positives = 17/61 (27%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A    G    +LE     +  L  
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403

Query: 72  A 72
           A
Sbjct: 404 A 404

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 9/61 (14%), Positives = 16/61 (26%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A         +LE     +  L  
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165

Query: 72  A 72
           A
Sbjct: 166 A 166

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 8/56 (14%), Positives = 15/56 (26%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT 70
             +     Q  + +   L    +A  + P    A         +LE     +  L 
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 10/61 (16%), Positives = 18/61 (29%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                + +   Q  + +   L    +A  + P    A    G    +LE     +  L  
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335

Query: 72  A 72
           A
Sbjct: 336 A 336

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 17/58 (29%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
             +     Q  + +   L    +A  + P    A    G    +LE     +  L  A
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA 200

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 9/61 (14%), Positives = 16/61 (26%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A         +LE     +  L  
Sbjct: 72  VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 131

Query: 72  A 72
           A
Sbjct: 132 A 132

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 16/59 (27%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT 70
                +     Q  + +   L    +A  + P    A    G    +LE     +  L 
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHD----LT 70
          Y     +     +  E +    +A+Q+ P  +K W  +GK   +LE +++AV      + 
Sbjct: 9  YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 71 IAKNRESSLA 80
          + ++  +   
Sbjct: 69 VIEDEYNKDV 78

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 5/60 (8%), Positives = 15/60 (25%), Gaps = 2/60 (3%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSY--AKAWYRRGKVNVSLENHDDAVHDLTIA 72
           ++ +   L   +   E +   N  + +         W  +      +E  +         
Sbjct: 43  WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 13/58 (22%), Positives = 21/58 (36%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           Y    +V   ++   E      +A++        +Y  G V V LE    A+  L  A
Sbjct: 94  YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           +    +VL K +     L    RAV++  +  +A ++ G    +    D+A+      
Sbjct: 128 FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 14/58 (24%), Positives = 19/58 (32%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
                  L     L E L       +  P +A A+Y  G      EN + A+  L  A
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  Y+N A++L   + L   L   ++A+++  S A A+Y  G V V  E + +A      
Sbjct: 57  AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116

Query: 72  A 72
           A
Sbjct: 117 A 117

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 5/69 (7%), Positives = 20/69 (28%)

Query: 4  NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHD 63
            +  ++ +     +     +     +      +A++     A  +     +  S+   +
Sbjct: 15 VPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELE 74

Query: 64 DAVHDLTIA 72
           A+     A
Sbjct: 75 RALAFYDKA 83

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A L+    + L   +   E L   NRA+ I P Y +  Y       ++  +D A   L  
Sbjct: 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265

Query: 72  A---------KNRESSLAGKKQIESELKIILDQSNR 98
           A            E+S    + +    +++L+  NR
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 12/58 (20%), Positives = 17/58 (29%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           +     + K  +L E         Q  P   +AW   G      E    A+  L  A
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHA 81

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 25/68 (36%)

Query: 5   DKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD 64
             D ++      +        +   EC    + A+++ P+ A+     G +     N+D 
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDS 190

Query: 65  AVHDLTIA 72
           A  +L  A
Sbjct: 191 AAANLRRA 198

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
           A L+ +   +    ++      +  RAV++ P  A+ W + G    +     +A+
Sbjct: 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
            +L+    + L   D   E +    RA++I P + ++ Y  G   ++L  + +AV +   
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306

Query: 72  A-----KNRES----SLAGKKQIESELKIILDQSNR 98
           A     K+R        A    I + L+I L   ++
Sbjct: 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 16/58 (27%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
                    K   L   +     A+   P  A+AW   G      EN   A+  L   
Sbjct: 68  AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
             L      +          +   N A+ + P     W R G    + +  ++AV
Sbjct: 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 5/58 (8%), Positives = 11/58 (18%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDL 69
               +  A       H  +        ++  P Y      +            +  D 
Sbjct: 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT- 70
                 A    K D+    L      V+  P Y   +Y  GK+   L+  DDA+     
Sbjct: 7  PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66

Query: 71 -IAKNRESSLAGKKQIESELKIILDQ 95
           I   RE    G ++  SEL+    +
Sbjct: 67 GIEVARE---EGTQKDLSELQDAKLK 89

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 8/63 (12%), Positives = 18/63 (28%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             +    A +      L E L    +A++  P       R     +     ++A     +
Sbjct: 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

Query: 72  AKN 74
             +
Sbjct: 211 EHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
           +     L         L    RA++  P   +A Y   +  + L   + A+
Sbjct: 8  PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPAL 59

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 10/81 (12%), Positives = 26/81 (32%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
               +  A++ Q ++   +       A  +  +     +  G+  + L+    A     +
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 72  AKNRESSLAGKKQIESELKII 92
                +    K + +S L  I
Sbjct: 130 VIQHSNDEKLKIKAQSYLDAI 150

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 11/60 (18%), Positives = 20/60 (33%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
              A  L K ++  E +   N+      +    + RR      L  +D A  D+    +
Sbjct: 6  EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 6/61 (9%), Positives = 19/61 (31%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             +Y    S    + +    ++   + ++   +  K +Y  G+     + +  A      
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

Query: 72  A 72
            
Sbjct: 168 V 168

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 7/58 (12%), Positives = 18/58 (31%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           +     +L K+      ++    AV    +    + + G    +  N   A+  +   
Sbjct: 77  FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 4/53 (7%), Positives = 16/53 (30%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD 64
             ++             V+      + +++ P+    +  R + N + +    
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 11/61 (18%), Positives = 17/61 (27%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A L   R  +            D ++A+ I P   + +   G       N D A      
Sbjct: 43  AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102

Query: 72  A 72
            
Sbjct: 103 V 103

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 9/61 (14%), Positives = 18/61 (29%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             ++      L +  +        +  +++ P+Y  A   RG           A  DL  
Sbjct: 77  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136

Query: 72  A 72
            
Sbjct: 137 F 137

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 9/58 (15%), Positives = 13/58 (22%), Gaps = 1/58 (1%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
           ++NR   L           D     Q  P+              L +   A   L   
Sbjct: 114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQH 170

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 5/57 (8%), Positives = 8/57 (14%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHD 68
           +               L         AV                   L    D + +
Sbjct: 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
          + N  +   K+    E +    +A+++ P  A+AWY  G       ++D+A+     A
Sbjct: 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
          A  + N  +   K+    E +    +A+++ P  A+AWY  G       ++D+A+     
Sbjct: 1  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 72 A 72
          A
Sbjct: 61 A 61

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
           + N  +   K+    E +    +A+++ P  A+AWY  G       ++D+A+
Sbjct: 72  WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
           ++      K   +        R++   P   K     G   V ++ +D AV
Sbjct: 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAV 96

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 3/70 (4%)

Query: 3  ANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH 62
           ND   ++    Y ++     K     + +    +               G   V     
Sbjct: 2  GND---DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV 58

Query: 63 DDAVHDLTIA 72
          D     L  +
Sbjct: 59 DRGTELLERS 68

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 8/58 (13%), Positives = 16/58 (27%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
                    +       +    +  +  P      +R G    +L   D+A+    IA
Sbjct: 79  ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 11/61 (18%), Positives = 16/61 (26%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                       +   L   +     AVQ  P + +AW   G      E    A+  L  
Sbjct: 64  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

Query: 72  A 72
            
Sbjct: 124 C 124

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             L+    + L   +   E +    RA+++ P Y ++ Y  G   ++L  H +AV     
Sbjct: 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310

Query: 72  A 72
           A
Sbjct: 311 A 311

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 6/55 (10%), Positives = 17/55 (30%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
             +      +        + +     A+ + P+    W + G    +    ++AV
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
          + N  +   K+    E +    +A+++ P+ A+AWY  G       ++D+A+
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 97

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
          A  + N  +   K+    E +    +A+++ P+ A+AWY  G       ++D+A+     
Sbjct: 9  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 72 A 72
          A
Sbjct: 69 A 69

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 16/56 (28%)

Query: 17 NRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
               + K  +L E         Q  P   +AW   G      E    A+  L  A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 8/59 (13%), Positives = 15/59 (25%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT 70
                +     Q  + +   L    +A  + P    A         +LE     +  L 
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
             +     Q  + +   L    +A  + P+   A         +LE     +  L  A
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQA 659

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 10/61 (16%), Positives = 17/61 (27%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A    G    +LE     +  L  
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQ 319

Query: 72  A 72
           A
Sbjct: 320 A 320

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 9/61 (14%), Positives = 16/61 (26%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A         +LE     +  L  
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353

Query: 72  A 72
           A
Sbjct: 354 A 354

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 10/61 (16%), Positives = 17/61 (27%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
                +     Q  + +   L    +A  + P    A    G    +LE     +  L  
Sbjct: 328 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 387

Query: 72  A 72
           A
Sbjct: 388 A 388

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 7/52 (13%), Positives = 16/52 (30%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
            +N+     K+           R++   P +  A+    +  +      DA 
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 11/60 (18%), Positives = 21/60 (35%)

Query: 7  DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
            N V+ +    A    +     +       A++  P    AW  R ++   L+ +D A 
Sbjct: 3  KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 10/65 (15%), Positives = 21/65 (32%)

Query: 5   DKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD 64
           DK+  + + L    A   +K  +  +        +Q  P+         ++ V      D
Sbjct: 47  DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

Query: 65  AVHDL 69
           A+   
Sbjct: 107 ALRMY 111

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 15  YVNRASVLQKR-DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
            +   +      +   + L    + +        A YR G   +    ++ A + L   
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 5/81 (6%), Positives = 26/81 (32%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
           ++   +  Q        +   +    +     +  +   +  +      +A   L +A+ 
Sbjct: 58  FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117

Query: 75  RESSLAGKKQIESELKIILDQ 95
             ++     ++ + +  +L+ 
Sbjct: 118 LIANXPEFXELSTRVSSMLEA 138

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 11/61 (18%), Positives = 21/61 (34%)

Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
             ++  A                 R + + P + +A  R G+V  + + H +A   L  
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 72 A 72
          A
Sbjct: 83 A 83

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
           A  Y N  + L++   +   L+   RA+QI P++A A      ++    N  +A+     
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

Query: 72  A 72
           A
Sbjct: 137 A 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	665
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	100.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	100.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	100.0
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	99.44
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	99.29
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	99.23
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.16
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.11
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	99.03
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	98.98
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.89
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.88
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	98.83
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	98.8
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	98.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.76
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.74
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.73
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.71
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.71
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.7
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.67
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.66
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.65
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.65
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	98.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.63
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.62
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	98.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.61
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	98.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.57
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	98.56
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.52
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.52
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.52
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.52
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.52
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	98.5
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.5
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.49
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.48
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	98.48
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	98.48
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	98.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.45
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.45
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.43
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	98.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.43
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.41
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	98.4
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.4
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.29
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.29
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.27
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.25
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.21
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.18
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.18
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.15
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.14
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.12
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.12
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.1
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.05
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.05
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.03
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.03
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	98.02
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.01
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.0
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.94
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.94
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.94
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.93
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.89
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.89
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.87
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.83
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.83
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.81
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.81
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	97.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.8
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	97.76
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.76
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.76
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.75
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.73
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.73
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.67
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.66
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.66
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.66
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.65
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.64
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.64
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.64
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.63
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.62
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.62
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.61
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.6
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.57
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.56
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.56
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.56
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.55
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	97.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.52
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.5
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.49
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.48
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.42
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	97.41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.37
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.37
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.37
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.36
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.34
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.3
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.26
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.24
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.18
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.15
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.01
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.01
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.0
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	96.98
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.92
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.89
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.88
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.84
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.78
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.75
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.73
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.71
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.7
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.68
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.67
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.67
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	96.65
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.58
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.57
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.55
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.45
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.45
3ray_A	237	PR domain-containing protein 11; structural genomi	96.42
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.39
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.36
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.26
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.19
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.13
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.9
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.89
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.84
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	95.44
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.23
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.23
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.14
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.88
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.82
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	94.6
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.54
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.18
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	94.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	93.62
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	93.53
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	93.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	92.74
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.07
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	91.61
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	91.24
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	91.18
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.13
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	89.96
1klx_A	138	Cysteine rich protein B; structural genomics, heli	89.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.34
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	89.07
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	89.07
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	89.01
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	88.37
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	88.12
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	87.97
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	87.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.72
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	87.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.88
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	86.86
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	86.07
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	85.0
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	84.7
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	83.67
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	83.2
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	82.74
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	81.6

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=100.00  E-value=1.3e-60  Score=519.51  Aligned_cols=416  Identities=20%  Similarity=0.262  Sum_probs=303.6

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhcc
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQ  199 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~  199 (665)
                      ..|++..++.+||||||+++|++||+|+.|+|+++++.......+|.+|+++.. .+.+|++|++++|||++||+.+|. 
T Consensus         7 ~~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w~-   84 (433)
T 3qww_A            7 GGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKE-GLSKCGRCKQAFYCDVECQKEDWP-   84 (433)
T ss_dssp             TTEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCS-SCEECTTTSCCEESSHHHHHHHHH-
T ss_pred             CcEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCC-CCCCCCCCcceeecChhhhhhhhh-
Confidence            368899999999999999999999999999999999888888999999999754 589999999999999999999995 


Q ss_pred             ccccCCcccccccccchhhHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCchHHHHHHHHHHHhHhhcCCCCCch
Q 048211          200 VFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVP  279 (665)
Q Consensus       200 ~H~~eC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~eC~~~~~~~~~p~~~~l~~R~l~~~~~~~~~~~~~~  279 (665)
                      +|+.||.....+                                   ...|  .++..+++++|++++... .+......
T Consensus        85 ~Hk~eC~~l~~~-----------------------------------~~~~--~p~~~~rl~~Ril~~~~~-~~~~~~~~  126 (433)
T 3qww_A           85 LHKLECSSMVVL-----------------------------------GENW--NPSETVRLTARILAKQKI-HPERTPSE  126 (433)
T ss_dssp             HHTTTHHHHHHS-----------------------------------STTC--CCCHHHHHHHHHHHHHHH-CCSCCGGG
T ss_pred             HHHHHHHHHHHh-----------------------------------CccC--CCcHHHHHHHHHHHHhhh-ccccCchh
Confidence            889998664311                                   0001  234567899999887532 11111233


Q ss_pred             hhhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHhhhcCCCCCCCCccHHHHHHHHhhhhcceeeccccccCCCCCCCCC
Q 048211          280 NLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV  359 (665)
Q Consensus       280 ~~~~~~~L~~h~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~  359 (665)
                      .+..+.+|++|.+.+.++.+..+......+..++....  .    ..+...++.+++++.+|+|+|.+.           
T Consensus       127 ~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~--~----~~~~~~i~~~~~~~~~N~f~i~~~-----------  189 (433)
T 3qww_A          127 KLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYL--E----FPDHSSLVVLFAQVNCNGFTIEDE-----------  189 (433)
T ss_dssp             SSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTC--C----CCCHHHHHHHHHHHHHHCEEEECT-----------
T ss_pred             hhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhccc--C----CCCHHHHHHHHHHHcCCceecccC-----------
Confidence            55567889999988876543222211112222332211  1    123566788999999999999641           


Q ss_pred             CCCCccccccceeEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCC
Q 048211          360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYS  439 (665)
Q Consensus       360 ~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~  439 (665)
                              +...+|.||||.+|+|||||+||+.+.|+|++++|||++||++||||||||++.  .+++.+||+.|+++|+
T Consensus       190 --------~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~~--~~~~~~R~~~L~~~~~  259 (433)
T 3qww_A          190 --------ELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDL--LYPTEDRNDRLRDSYF  259 (433)
T ss_dssp             --------TCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEECCSCT--TSCHHHHHHHHHHHHS
T ss_pred             --------CccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEeecCC--cCCHHHHHHHHhCcCC
Confidence                    125689999999999999999999999999999999999999999999999997  5899999999999999


Q ss_pred             eeeeccCCCCCccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCCchhHHHHHHHHhh
Q 048211          440 FRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLE  519 (665)
Q Consensus       440 F~C~C~rC~~~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  519 (665)
                      |+|.|+||.++++++.+. ++++    |+..  +..                        .+     -++++..++..++
T Consensus       260 F~C~C~~C~~~~~d~~~~-~~~~----~~~~--~~~------------------------e~-----v~~~~~~~~~~le  303 (433)
T 3qww_A          260 FTCECRECTTKDKDKAKV-EVRK----LSSP--PQA------------------------EA-----IRDMVRYARNVIE  303 (433)
T ss_dssp             CCCCSHHHHHCTTHHHHT-CBCC----CSSC--CCH------------------------HH-----HHHHHHHHHHHHH
T ss_pred             EEeECCCCCCCCcchhhh-hhhh----cCCC--ccH------------------------HH-----HHHHHHHHHHHHH
Confidence            999999999988754333 3321    2211  000                        00     0223333444442


Q ss_pred             hcCCccccCCccccccCccccchhhhhhHHHHHHHHHHHH----HHHhHHhh----HHHHHHHHHHHHHhHHHHHHHhhh
Q 048211          520 ENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQ----DAIISKEI----SRAVLLDASRFLGLLRSILHAYNK  591 (665)
Q Consensus       520 ~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~~~~  591 (665)
                      .....   .++     |   +.       ++|...+++..    ..+...++    +...+..+...+++|.+++. +..
T Consensus       304 ~~~~~---~~~-----g---~~-------~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~-~~~  364 (433)
T 3qww_A          304 EFRRA---KHY-----K---SP-------SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALK-YGQ  364 (433)
T ss_dssp             HHHHH---TTT-----S---CH-------HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred             HHHHh---hhc-----c---CH-------HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHH-HHH
Confidence            21110   000     0   11       22232332211    11111111    12356666777899999995 888


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211          592 SIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ  657 (665)
Q Consensus       592 ~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~  657 (665)
                      +.+.++++.||++||.+|..|++||.++++.|+.++| +++.||.+|+..+||++||.|.++..+|+
T Consensus       365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            8899999999999999999999999999999999999 99999999999999999999988777665

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=100.00  E-value=3.6e-60  Score=517.05  Aligned_cols=420  Identities=20%  Similarity=0.307  Sum_probs=309.5

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhcc
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQ  199 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~  199 (665)
                      .+|+++.++++||||||++||++||+|+.|+|++.++.......+|.+|+++.+ .+++|++|++++|||++||+.+|. 
T Consensus         5 ~~i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w~-   82 (429)
T 3qwp_A            5 LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKE-KLMRCSQCRVAKYCSAKCQKKAWP-   82 (429)
T ss_dssp             CSEEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCS-SCEECTTTSCCEESSHHHHHHTHH-
T ss_pred             cceeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCC-CCCcCCCCCCcccCChhhhhhhhh-
Confidence            467788899999999999999999999999999999887788999999999754 589999999999999999999997 


Q ss_pred             ccccCCcccccccccchhhHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCchHHHHHHHHHHHhHhhcCCCCCch
Q 048211          200 VFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVP  279 (665)
Q Consensus       200 ~H~~eC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~eC~~~~~~~~~p~~~~l~~R~l~~~~~~~~~~~~~~  279 (665)
                      +|+.||......                                      ++.+++..+++++|++++.....  +...+
T Consensus        83 ~Hk~eC~~~~~~--------------------------------------~~~~~~~~~rl~~rill~~~~~~--~~~~~  122 (429)
T 3qwp_A           83 DHKRECKCLKSC--------------------------------------KPRYPPDSVRLLGRVVFKLMDGA--PSESE  122 (429)
T ss_dssp             HHHHHHHHHHHT--------------------------------------TTCCCCHHHHHHHHHHHHHHHSC--CCGGG
T ss_pred             hhHHhhhhHHhc--------------------------------------CccCCChHHHHHHHHHHHHhcCC--CCchh
Confidence            788777653210                                      12234456788899998764321  22334


Q ss_pred             hhhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHhhhcCC-CCCCCCccHHHHHHHHhhhhcceeeccccccCCCCCCCC
Q 048211          280 NLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGF-ELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDH  358 (665)
Q Consensus       280 ~~~~~~~L~~h~~~~~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~  358 (665)
                      .|..+.+|++|.+++.++..-.+..+...+..++...... ....+.   ..++.+++++.+|+|+|.+.          
T Consensus       123 ~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~N~f~i~~~----------  189 (429)
T 3qwp_A          123 KLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPA---FDLFEAFAKVICNSFTICNA----------  189 (429)
T ss_dssp             SSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGGSCTT---CCHHHHHHHHHHHCEEEECT----------
T ss_pred             hhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCccccCCCH---HHHHHHHHHHHhcCcccccc----------
Confidence            6777899999998887654322333322233333321100 000111   24678899999999999631          


Q ss_pred             CCCCCccccccceeEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCC
Q 048211          359 VSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEY  438 (665)
Q Consensus       359 ~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y  438 (665)
                               +...+|.||||.+|+|||||.||+.+.|+|++++|||+|||++||||||||++.  .+++.+||+.|+++|
T Consensus       190 ---------~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~--~~~~~~R~~~L~~~~  258 (429)
T 3qwp_A          190 ---------EMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM--LMTSEERRKQLRDQY  258 (429)
T ss_dssp             ---------TSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCS--SCCHHHHHHHHHHHH
T ss_pred             ---------ccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCC--CCCHHHHHHHHhccC
Confidence                     125689999999999999999999999999999999999999999999999986  589999999999999


Q ss_pred             CeeeeccCCCCCccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCCchhHHHHHHHHh
Q 048211          439 SFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLL  518 (665)
Q Consensus       439 ~F~C~C~rC~~~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  518 (665)
                      +|+|.|+||.++..++.++++-.+.             ..+.......+...        ..   .-.|++..+.++.+|
T Consensus       259 ~F~C~C~~C~~~~~~~~~~~~~~~~-------------~~~~~~ll~~ie~~--------~~---~g~~~~a~~~~~~~L  314 (429)
T 3qwp_A          259 CFECDCFRCQTQDKDADMLTGDEQV-------------WKEVQESLKKIEEL--------KA---HWKWEQVLAMCQAII  314 (429)
T ss_dssp             CCCCCSHHHHHTTTHHHHTCSCHHH-------------HHHHHHHHHHHHHH--------HH---TTCHHHHHHHHHHHH
T ss_pred             CeEeeCCCCCCCcccccccccchhh-------------hHHHHHHHHHHHHH--------Hh---hccHHHHHHHHHHHH
Confidence            9999999999887655444321110             01110000000000        00   012445555666666


Q ss_pred             hhcCCccccCCccccccCccccchhhhhhHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 048211          519 EENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILE  598 (665)
Q Consensus       519 ~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  598 (665)
                      +....++...+                ..   ....+              ..+..+...+++|.+++. +....+.+++
T Consensus       315 ~~~~~~lg~~h----------------~~---~~~~~--------------~~L~~~y~~~g~~~eA~~-~~~~~L~i~~  360 (429)
T 3qwp_A          315 SSNSERLPDIN----------------IY---QLKVL--------------DCAMDACINLGLLEEALF-YGTRTMEPYR  360 (429)
T ss_dssp             TCSSCCCCTTS----------------HH---HHHHH--------------HHHHHHHHHHTCHHHHHH-HHHHHHHHHH
T ss_pred             HhccCcCCccc----------------hH---HHHHH--------------HHHHHHHHhhccHHHHHH-HHHHHHHhHH
Confidence            54444333221                00   00011              233444556788888885 8888899999


Q ss_pred             HHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHHHHHhcC
Q 048211          599 KLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL  663 (665)
Q Consensus       599 ~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~~~~~~~  663 (665)
                      +.||+.||.+|..|++||.++++.|+.++| .++.||.+|+.++||++||.|.+.+.+|.++..++
T Consensus       361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 99999999999999999999999999999987764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=100.00  E-value=1.7e-59  Score=518.42  Aligned_cols=419  Identities=18%  Similarity=0.289  Sum_probs=309.7

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhcc
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQ  199 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~  199 (665)
                      ..|++..++.+||||||++||++||+|+.|+|+++++.......+|++|++... .+++|++|++++|||++||+.+|. 
T Consensus         7 ~~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w~-   84 (490)
T 3n71_A            7 ENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQE-KLHRCGQCKFAHYCDRTCQKDAWL-   84 (490)
T ss_dssp             TTEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCS-CCEECTTTSCCEESSHHHHHHHHH-
T ss_pred             CceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCC-CCCCCCCCCCcCcCCHHHhhhhhh-
Confidence            368899999999999999999999999999999998888889999999999643 589999999999999999999997 


Q ss_pred             ccccCCcccccccccchhhHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCchHHHHHHHHHHHhHhhcCCCCCch
Q 048211          200 VFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVP  279 (665)
Q Consensus       200 ~H~~eC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~eC~~~~~~~~~p~~~~l~~R~l~~~~~~~~~~~~~~  279 (665)
                      +|+.||.....                                       |+..++..+++++|+|++.... ....+..
T Consensus        85 ~Hk~eC~~~~~---------------------------------------~~~~p~~~~rl~lRiL~~~~~~-~~~~~~~  124 (490)
T 3n71_A           85 NHKNECAAIKK---------------------------------------YGKVPNENIRLAARIMWRVERE-GTGLTEG  124 (490)
T ss_dssp             HHHHHHHHHHH---------------------------------------HTSCCCHHHHHHHHHHHHHHHT-TSSBCTT
T ss_pred             HHHHHhHHHHh---------------------------------------cCcCCCHHHHHHHHHHHHhhcc-CccCcch
Confidence            78888865321                                       1123345678999999875332 2122334


Q ss_pred             hhhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHhhhcCCCCCCCCccHHHHHHHHhhhhcceeeccccccCCCCCCCCC
Q 048211          280 NLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV  359 (665)
Q Consensus       280 ~~~~~~~L~~h~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~  359 (665)
                      .+..+.+|++|.+++.++...........   ++. +++..  ....+...+..+++++.+|+|+|.+.           
T Consensus       125 ~~~~~~~L~sh~~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~l~~~~~~~~~N~f~i~~~-----------  187 (490)
T 3n71_A          125 CLVSVDDLQNHVEHFGEEEQKELRVDVDT---FLQ-YWPPQ--SQQFSMQYISHIFGVINCNGFTLSDQ-----------  187 (490)
T ss_dssp             CSSBGGGSCCCGGGCCHHHHHHHHHHHHH---HHH-HSCTT--SCCCCHHHHHHHHHHHHTTEEEEECT-----------
T ss_pred             hhhHHHHHHhhhhhcCchHHHHHHHHHHH---HHH-Hcccc--ccCCCHHHHHHHHHHHhccCcccccC-----------
Confidence            56778899999998886554222222122   222 22211  12335667888999999999999641           


Q ss_pred             CCCCccccccceeEEEeccccccccCCCcCCcEEEEeCC-------------EEEEEEeecCCCCCceeeecCCCCCCCC
Q 048211          360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSR-------------TLMIRTTEFVPSGYPLELSYGPQVGQWD  426 (665)
Q Consensus       360 ~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~~f~g~-------------~~~vrA~r~I~~GeeI~isY~~~~~~~~  426 (665)
                       .|      ...+|.||||.+|+|||||+||+.++|+++             +++|+|+|||++||||||||++.  .++
T Consensus       188 -~g------~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~--~~~  258 (490)
T 3n71_A          188 -RG------LQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDF--LHL  258 (490)
T ss_dssp             -TS------CSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCS--CSC
T ss_pred             -CC------CccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEECCCCCCCCEEEEeecCC--CCC
Confidence             01      146899999999999999999999999987             99999999999999999999987  589


Q ss_pred             HHHHHHHhhcCCCeeeeccCCCCCccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCC
Q 048211          427 CKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLS  506 (665)
Q Consensus       427 ~~~Rr~~L~~~y~F~C~C~rC~~~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (665)
                      +.+||+.|+++|+|+|.|+||.++.+++.+++. ++    |+  . +..      ..                       
T Consensus       259 ~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~-~~----~~--~-~s~------e~-----------------------  301 (490)
T 3n71_A          259 SEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAA-KE----DP--K-PSQ------EV-----------------------  301 (490)
T ss_dssp             HHHHHHHHHHHHSSCCCCHHHHHTTTHHHHTCB-CS----SS--C-CCH------HH-----------------------
T ss_pred             HHHHHHHHHCCCCeEeeCCCCCCCCcccchhhc-cc----CC--C-CCH------HH-----------------------
Confidence            999999999999999999999998876666544 21    11  0 000      00                       


Q ss_pred             chhHHHHHHHHhhhcCCccccCCccccccCccccchhhhhhHHHHHHHHHHH----HHHHhHHhh----HHHHHHHHHHH
Q 048211          507 SDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRL----QDAIISKEI----SRAVLLDASRF  578 (665)
Q Consensus       507 ~~~~~~~~~~~l~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~  578 (665)
                      ..++...++.++++...-..           .-..       ++|...+++.    +..+...++    +...+..+...
T Consensus       302 v~~~l~~a~~~le~a~~~~~-----------qg~~-------~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~  363 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARS-----------EGLY-------HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY  363 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-----------TTCH-------HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----------CCCH-------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            01223333333322110000           0001       2222222221    111111111    12345666677


Q ss_pred             HHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211          579 LGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ  657 (665)
Q Consensus       579 l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~  657 (665)
                      +++|.+++. +....+.++++.||+.||.+|..|.+||.+++..|+.++| ..+.||.+|+..+||++||.|.+.+.+|.
T Consensus       364 ~g~~~eA~~-~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  442 (490)
T 3n71_A          364 LQAYEEASH-YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM  442 (490)
T ss_dssp             TTCHHHHHH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             hcCHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            889999995 7788899999999999999999999999999999999999 99999999999999999999999999998


Q ss_pred             HHHhc
Q 048211          658 REALK  662 (665)
Q Consensus       658 ~~~~~  662 (665)
                      ++..+
T Consensus       443 ~~~~e  447 (490)
T 3n71_A          443 QTEME  447 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=99.44  E-value=2e-14  Score=141.90  Aligned_cols=69  Identities=17%  Similarity=0.401  Sum_probs=59.1

Q ss_pred             eEEEeccc-cccccCCCcCCcEEEEe-CCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCC
Q 048211          372 VGLAIYTA-GSLFNHSCLPNIHAYFL-SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSE  449 (665)
Q Consensus       372 ~g~glyp~-~Sl~NHSC~PN~~~~f~-g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~  449 (665)
                      ...++|+. ++++||||.||+...+. +.++.|+|+|||++|||||++|++.+  |          ..+.|.|.|.+|..
T Consensus       168 ~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~--~----------~~~~f~C~C~~C~~  235 (247)
T 3rq4_A          168 RSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGF--F----------GEKNEHCECHTCER  235 (247)
T ss_dssp             TEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTS--S----------SGGGTTCCCHHHHH
T ss_pred             ccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchh--c----------CCCCCEEECCCCCC
Confidence            46788886 88999999999977765 67999999999999999999999863  4          34789999999987


Q ss_pred             Ccc
Q 048211          450 LNT  452 (665)
Q Consensus       450 ~~~  452 (665)
                      +.+
T Consensus       236 ~~~  238 (247)
T 3rq4_A          236 KGE  238 (247)
T ss_dssp             HTC
T ss_pred             CCC
Confidence            654

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=99.29  E-value=9.5e-13  Score=131.14  Aligned_cols=62  Identities=23%  Similarity=0.449  Sum_probs=53.0

Q ss_pred             ccccccccCCCcCCcEEEEeCC-EEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCCC
Q 048211          377 YTAGSLFNHSCLPNIHAYFLSR-TLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSEL  450 (665)
Q Consensus       377 yp~~Sl~NHSC~PN~~~~f~g~-~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~  450 (665)
                      ...++++||||.||+.+.+.|. ++.++|+|||++|||||++|++.+  ++          .+.|.|.|.+|.-.
T Consensus       203 g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~--~~----------~~~f~C~C~~c~cr  265 (273)
T 3s8p_A          203 LGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGF--FG----------ENNEFCECYTCERR  265 (273)
T ss_dssp             ESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTT--TS----------GGGTTCCCHHHHHH
T ss_pred             cchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchh--cC----------CCCeEEECCCCcCC
Confidence            3456999999999999888875 899999999999999999999763  43          36799999999744

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=99.23  E-value=1.7e-12  Score=114.93  Aligned_cols=53  Identities=26%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             EEEeccccccccCCCcCCcEEEEe--CCEEEEEEeecCCCCCceeeecCCCCCCCCH
Q 048211          373 GLAIYTAGSLFNHSCLPNIHAYFL--SRTLMIRTTEFVPSGYPLELSYGPQVGQWDC  427 (665)
Q Consensus       373 g~glyp~~Sl~NHSC~PN~~~~f~--g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~  427 (665)
                      +..+++.++++||||.||+...+.  +.++.++|+|||++|||||++|++.+  |+.
T Consensus        58 ~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~--~~~  112 (119)
T 1n3j_A           58 SAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDY--WLS  112 (119)
T ss_dssp             EEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCC--CCC
T ss_pred             cccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchh--hcC
Confidence            456889999999999999999887  35899999999999999999999874  544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.20  E-value=1.1e-11  Score=114.43  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQI-------CPSYAKAW----YRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-------~p~~~ka~----~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.+|.|||.++.++|+|++|+.++++||++       +|+++++|    +|+|.++..+|+|++|+.+|+++++++|++
T Consensus        56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            4669999999999999999999999999999       99999999    999999999999999999999999999987


Q ss_pred             HHH
Q 048211           80 AGK   82 (665)
Q Consensus        80 ~~~   82 (665)
                      .++
T Consensus       136 ~~~  138 (159)
T 2hr2_A          136 KGE  138 (159)
T ss_dssp             CSC
T ss_pred             HHH
Confidence            543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.16  E-value=1.8e-10  Score=106.94  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=77.3

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA-GKKQIE   86 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~-~~~~~~   86 (665)
                      .+..+.+|.|+|.+|+++|+|++|+.++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++. .+....
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999987 555555


Q ss_pred             HHHHHHHh
Q 048211           87 SELKIILD   94 (665)
Q Consensus        87 ~~l~~~~~   94 (665)
                      ..++..+.
T Consensus       139 ~~~~~~~~  146 (162)
T 3rkv_A          139 KIVTERRA  146 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.11  E-value=4.3e-10  Score=100.29  Aligned_cols=70  Identities=20%  Similarity=0.201  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+..+.|+|.+|++.|+|++|++.+++|++++|+++.+|+.+|.++..+|++++|+++|+++++++|++.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence            4556666666666666666666666666666666666666666666666666666666666666666654

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=99.03  E-value=1.7e-10  Score=110.18  Aligned_cols=55  Identities=25%  Similarity=0.443  Sum_probs=41.6

Q ss_pred             ccccccCCCcCCcEEEE---eC-CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeec
Q 048211          379 AGSLFNHSCLPNIHAYF---LS-RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQC  444 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~f---~g-~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C  444 (665)
                      .++++||||.||+...+   +| .++.++|+|||++|||||++|++.+  +..         .+.|.|.|
T Consensus       124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~--~~~---------~~~~~C~C  182 (192)
T 2w5y_A          124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPI--EDA---------SNKLPCNC  182 (192)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC------------------CCBCCC
T ss_pred             hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCch--hcC---------CCCceeEC
Confidence            46789999999997643   33 3799999999999999999999753  321         36799998

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=90.72  Aligned_cols=57  Identities=14%  Similarity=0.294  Sum_probs=38.2

Q ss_pred             cCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211          138 YDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME  207 (665)
Q Consensus       138 rdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~  207 (665)
                      ++|++||+|+.++|         ....|..|++.   .+.+|++|+.++|||.+||..+|. .|+.+|..
T Consensus         2 ~~~~~G~~il~~~~---------~~~~C~~C~~~---~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~   58 (64)
T 2odd_A            2 NLYFQGENLYFQGD---------SSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ   58 (64)
T ss_dssp             -------------C---------CSSSCTTTSSC---CCEEETTTSCCEESSHHHHHHHHH-HHTTTTTS
T ss_pred             CcCCCCCEEeeCCC---------CCCcCccccCC---CcccCCCCCChhhCCHHHHHHHHH-HHhHHHhc
Confidence            68999999999998         24689999984   478999999999999999999998 68888864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.90  E-value=7.1e-09  Score=95.61  Aligned_cols=70  Identities=7%  Similarity=-0.173  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.++|.+++++|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            4556667777777777777777777777777777777777777777777777777777777777777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.89  E-value=1.4e-08  Score=90.36  Aligned_cols=72  Identities=24%  Similarity=0.350  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.+|.|+|.+|+++|+|++|+.++++|++++|+++++|+++|.++..+|++++|++.|+++++++|++...
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           46 NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA  117 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999999999844

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.1e-08  Score=90.10  Aligned_cols=65  Identities=28%  Similarity=0.541  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      +.+|.|+|.+|+++|+|++|+.++++|++++|+++++|+++|.++..+|++++|++.|+++++++
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            45566666666666666666666666666666666666666666666666666666666666666

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=98.83  E-value=1.4e-09  Score=102.05  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=42.7

Q ss_pred             cccccCCCcCCcEEE--EeCC--EEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhh
Q 048211          380 GSLFNHSCLPNIHAY--FLSR--TLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLE  435 (665)
Q Consensus       380 ~Sl~NHSC~PN~~~~--f~g~--~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~  435 (665)
                      +.++||||.||+...  +.++  ++.++|+|||++|||||++|++.+  .....|+..|+
T Consensus       108 aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~--~~~~~~~~~L~  165 (166)
T 3f9x_A          108 GRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRS--KASIEAHPWLK  165 (166)
T ss_dssp             GGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCC--HHHHHHCGGGG
T ss_pred             hheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCCh--hhHhhhCchhc
Confidence            568999999998654  3343  799999999999999999999763  45566666664

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=98.80  E-value=3.9e-09  Score=103.64  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=36.9

Q ss_pred             ccccccCCCcCCcEEEE--eC--CEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCLPNIHAYF--LS--RTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~f--~g--~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      .+.++||||.||+....  .+  .++.|+|+|||++|||||++|++.+
T Consensus       146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~  193 (222)
T 3ope_A          146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHS  193 (222)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSB
T ss_pred             cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcc
Confidence            45688999999997654  33  3799999999999999999999753

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=98.77  E-value=3.4e-09  Score=104.66  Aligned_cols=54  Identities=19%  Similarity=0.383  Sum_probs=42.9

Q ss_pred             ccccccCCCcCCcEEEE--eC--CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeec
Q 048211          379 AGSLFNHSCLPNIHAYF--LS--RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQC  444 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~f--~g--~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C  444 (665)
                      .+.++||||.||+...+  .+  .++.|+|+|||++|||||++|+..+  ++          ...|.|.|
T Consensus       165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~--~~----------~~~~~C~C  222 (232)
T 3ooi_A          165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLEC--LG----------NGKTVCKC  222 (232)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCS--TT----------CTTCBCCC
T ss_pred             ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCc--CC----------CCCcEeEC
Confidence            56789999999997643  22  4799999999999999999998653  32          34588887

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.76  E-value=2.4e-08  Score=88.85  Aligned_cols=70  Identities=11%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ..+.++.|.|.++++.|+|++|+..+++||+++|+++.+|+.+|.++..+|+|++|+++|+++++++|++
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            4678899999999999999999999999999999999999999999999999999999999999987754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.76  E-value=3.2e-08  Score=90.60  Aligned_cols=68  Identities=7%  Similarity=-0.032  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ..++.++|.++++.|+|++|+..+.++++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.74  E-value=2e-08  Score=89.42  Aligned_cols=65  Identities=23%  Similarity=0.328  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .+.+|.|+|.+|+++|+|++|++++++||+++|++...+..+|.++..+|..-.+..+++.|++.
T Consensus        41 ~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~  105 (127)
T 4gcn_A           41 NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW  105 (127)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999998888887753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.73  E-value=3.2e-08  Score=83.96  Aligned_cols=70  Identities=20%  Similarity=0.210  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.++|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|++.|++++++.|.+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            5678999999999999999999999999999999999999999999999999999999999999876543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.71  E-value=5.8e-08  Score=89.93  Aligned_cols=71  Identities=20%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.+|.|+|.+|+++|+|++|+.++++|++++|+++.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus        44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            35667778888888888888888888888888888888888888888888888888888888887777643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.71  E-value=4.7e-08  Score=107.07  Aligned_cols=75  Identities=16%  Similarity=0.311  Sum_probs=67.2

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      .+.+.+|.|+|.+|+++++|++|+.++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++....
T Consensus       314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~  388 (457)
T 1kt0_A          314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR  388 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            345899999999999999999999999999999999999999999999999999999999999999999986543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.71  E-value=4.4e-08  Score=88.62  Aligned_cols=70  Identities=7%  Similarity=-0.052  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ....+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|+|++|+..|+++++++|++.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   86 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP   86 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            3445666666666666666666666666666666666666666666666666666666666666666653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.70  E-value=9.2e-08  Score=83.34  Aligned_cols=82  Identities=12%  Similarity=0.023  Sum_probs=74.0

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      .+..+.++.|+|.+|+++|+|++|+..+++|++++|+++.+++.+|.++..+|++++|++.|+++++..|++.......+
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999876544443


Q ss_pred             HH
Q 048211           88 EL   89 (665)
Q Consensus        88 ~l   89 (665)
                      .+
T Consensus       103 ai  104 (117)
T 3k9i_A          103 AI  104 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.67  E-value=1.4e-07  Score=86.91  Aligned_cols=75  Identities=9%  Similarity=0.070  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~   85 (665)
                      .+.+|.|+|.+|..+|+|++|+..+++|++++|+++.+|+++|.++..+|++++|+..|++++++.|+.+.+.+.
T Consensus        69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A  143 (151)
T 3gyz_A           69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA  143 (151)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999997644333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.67  E-value=9e-08  Score=101.82  Aligned_cols=83  Identities=23%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE   88 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~   88 (665)
                      +..+.+|.|+|.+|+++|+|++|+.++++||+++|+++++|+++|.++..+|+|++|+++|+++++++|++.........
T Consensus       270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999998755444444


Q ss_pred             HHH
Q 048211           89 LKI   91 (665)
Q Consensus        89 l~~   91 (665)
                      +..
T Consensus       350 ~~~  352 (370)
T 1ihg_A          350 VKQ  352 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.66  E-value=1.5e-07  Score=86.30  Aligned_cols=73  Identities=12%  Similarity=-0.057  Sum_probs=69.2

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +..+..+.+.|.+|+++|+|++|++.+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus        28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  100 (150)
T 4ga2_A           28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKD  100 (150)
T ss_dssp             HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHH
Confidence            4567788999999999999999999999999999999999999999999999999999999999999999864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.65  E-value=1.3e-07  Score=99.15  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.+.+|.|+|.+|+++|+|++|+..+++|++++|+++++|+++|.++..+|+|++|+.+|+++++++|++...
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a  266 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA  266 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999998643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.65  E-value=3e-07  Score=78.28  Aligned_cols=69  Identities=10%  Similarity=0.067  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+..+.++|.+++++|+|++|+..+++|++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            467899999999999999999999999999999999999999999999999999999999999999997

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.65  E-value=1.7e-07  Score=89.66  Aligned_cols=81  Identities=15%  Similarity=0.134  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      ...++.|+|.+|+++|+|++|+..++++++++|+++++|+++|.++..+|+|++|++.|+++++++|++.........+.
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999875544444443


Q ss_pred             H
Q 048211           91 I   91 (665)
Q Consensus        91 ~   91 (665)
                      .
T Consensus       167 ~  167 (198)
T 2fbn_A          167 N  167 (198)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.63  E-value=6.3e-08  Score=89.06  Aligned_cols=74  Identities=19%  Similarity=0.152  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHL----------VECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-----------NHDDAVHDL   69 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~----------~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-----------~~~~A~~~~   69 (665)
                      .+.+|.|.+.++..++++          ++|+..+++||++||+++.+|+.+|.+|..+|           +|++|++.|
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~  114 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF  114 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHH
Confidence            567899999999999876          59999999999999999999999999999885           899999999


Q ss_pred             HHHHhcCCChHHHHH
Q 048211           70 TIAKNRESSLAGKKQ   84 (665)
Q Consensus        70 ~~al~l~p~~~~~~~   84 (665)
                      ++|++++|++....+
T Consensus       115 ~kAl~l~P~~~~y~~  129 (158)
T 1zu2_A          115 QQAVDEQPDNTHYLK  129 (158)
T ss_dssp             HHHHHHCTTCHHHHH
T ss_pred             HHHHHhCCCCHHHHH
Confidence            999999999874433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.62  E-value=4.8e-07  Score=73.98  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=69.6

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      +...+.++.++|.+++++|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++...
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~   79 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999999987643

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=98.62  E-value=1.6e-08  Score=103.87  Aligned_cols=64  Identities=22%  Similarity=0.383  Sum_probs=36.0

Q ss_pred             ccccccCCCcCCcEEEE-eC-------CEEEEEEeecCCCCCceeeecCCCCCCCCHH-HHHHHhhcCCCeeeec
Q 048211          379 AGSLFNHSCLPNIHAYF-LS-------RTLMIRTTEFVPSGYPLELSYGPQVGQWDCK-DRLKFLEDEYSFRCQC  444 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~f-~g-------~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~-~Rr~~L~~~y~F~C~C  444 (665)
                      .+.++||||+||+.+.. .+       .++.|+|+|+|++|||||++|++.+  |... +.....+....|.|.|
T Consensus       220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~--~~~~~~~~~~~k~~~~~~C~C  292 (302)
T 1ml9_A          220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGL--TGLESDAHDPSKISEMTKCLC  292 (302)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-------------------------
T ss_pred             HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCc--cccccccccccccCCCcEeeC
Confidence            46789999999997643 22       3799999999999999999998753  4322 1111222234578877

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.8e-07  Score=80.09  Aligned_cols=71  Identities=11%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+..+.++|..+++.|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR   73 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999764

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=98.61  E-value=7.4e-09  Score=105.26  Aligned_cols=56  Identities=29%  Similarity=0.728  Sum_probs=42.4

Q ss_pred             ccccccCCCcCCcEEE--EeC------CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeec
Q 048211          379 AGSLFNHSCLPNIHAY--FLS------RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQC  444 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~--f~g------~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C  444 (665)
                      .+.++||||.||+...  +..      .+|.++|+|||++|||||++|++.+  |+.        ....|.|.|
T Consensus       216 ~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~--~~~--------~~~~~~C~C  279 (287)
T 3hna_A          216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERF--WDI--------KGKLFSCRC  279 (287)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHH--HHH--------HTTTCCCCC
T ss_pred             chheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcc--ccc--------CCCcCEeeC
Confidence            4557899999999753  321      3899999999999999999998542  221        134789988

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.57  E-value=1.9e-07  Score=85.47  Aligned_cols=78  Identities=6%  Similarity=0.011  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCChHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHD-LTIAKNRESSLAGKKQIESE   88 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~-~~~al~l~p~~~~~~~~~~~   88 (665)
                      .+.+|.++|.+|.++|++++|+..+++|++++|+++.+|+++|.++..+|++++|.+. ++++++++|++...-.++.+
T Consensus        64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~  142 (150)
T 4ga2_A           64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ  142 (150)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999887765 58999999999865554433

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=98.56  E-value=1.2e-08  Score=103.99  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=37.6

Q ss_pred             ccccccCCCcCCcEEEE---eC--CEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCLPNIHAYF---LS--RTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~f---~g--~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      .+.++||||.||+.+..   ++  .++.|+|+|||++|||||++|++.+
T Consensus       205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~  253 (290)
T 3bo5_A          205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRY  253 (290)
T ss_dssp             GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCT
T ss_pred             chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCcc
Confidence            56799999999997653   33  4899999999999999999999764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.55  E-value=8.2e-07  Score=77.83  Aligned_cols=83  Identities=10%  Similarity=0.045  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      ..+.++.++|.+|+++|+|++|+..++++++.+|++   +.+++.+|.++..+|++++|+..|+++++..|++.......
T Consensus        37 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~  116 (129)
T 2xev_A           37 YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ  116 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            345678888888888888888888888888888888   78888888888888888888888888888888877655555


Q ss_pred             HHHHHH
Q 048211           87 SELKII   92 (665)
Q Consensus        87 ~~l~~~   92 (665)
                      ..+..+
T Consensus       117 ~~l~~l  122 (129)
T 2xev_A          117 ERLQSI  122 (129)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=7.5e-07  Score=79.73  Aligned_cols=72  Identities=26%  Similarity=0.197  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...++.++|.+|+.+|+|++|+..++++++++|+++.+|+++|.++..+|++++|+..|+++++++|++...
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  135 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF  135 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence            467777788888888888888888888888877777888888888888888888888888888777776633

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.52  E-value=1e-07  Score=100.01  Aligned_cols=74  Identities=24%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      .+|.|+|.+|+++|+|++|+..+++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++......+
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L  304 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL  304 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999987543333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.52  E-value=3.4e-07  Score=84.32  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-------YAK-----AWYRRGKVNVSLENHDDAVHDLTIAKNR---   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-------~~k-----a~~r~a~~~~~l~~~~~A~~~~~~al~l---   75 (665)
                      .+..+.|++..++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++++++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            5778899999999999999999999999999999       444     9999999999999999999999999999   


Q ss_pred             ----CCChHH
Q 048211           76 ----ESSLAG   81 (665)
Q Consensus        76 ----~p~~~~   81 (665)
                          +|++..
T Consensus        90 ~~e~~pd~~~   99 (159)
T 2hr2_A           90 RGELNQDEGK   99 (159)
T ss_dssp             HCCTTSTHHH
T ss_pred             cccCCCchHH
Confidence                998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.52  E-value=4.2e-07  Score=80.70  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+..+.++|.+++..|+|++|+..+.++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence            4566777777777777777777777777777777777777777777777777777777777777777654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.52  E-value=6.6e-07  Score=74.85  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAK-AWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k-a~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ..++|.++++.|+|++|+..++++++.+|+++. +|+.+|.++..+|++++|++.|+++++++|++...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   71 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL   71 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            368999999999999999999999999999999 99999999999999999999999999999998643

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=98.50  E-value=7.1e-08  Score=98.68  Aligned_cols=44  Identities=27%  Similarity=0.410  Sum_probs=37.0

Q ss_pred             ccccccCCCcCCcEEE--EeC------CEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCLPNIHAY--FLS------RTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~--f~g------~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      .+.++||||+||+...  +.+      .++.++|+|||++|||||++|++.+
T Consensus       213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~  264 (299)
T 1mvh_A          213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAK  264 (299)
T ss_dssp             GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTS
T ss_pred             hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCcc
Confidence            5668999999999753  322      3899999999999999999999764

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=98.50  E-value=5.5e-08  Score=97.35  Aligned_cols=44  Identities=30%  Similarity=0.297  Sum_probs=36.6

Q ss_pred             ccccccCCCcCCcEEEE-e----CCEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCLPNIHAYF-L----SRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~f-~----g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      .+.++||||.||+...+ .    +..+.++|+|||++|||||++|+...
T Consensus       186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~  234 (261)
T 2f69_A          186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  234 (261)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCS
T ss_pred             ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCcc
Confidence            35789999999997765 2    23459999999999999999999754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.49  E-value=1.4e-06  Score=80.40  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +....+..+.++|.++++.|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            445688999999999999999999999999999999999999999999999999999999999999999999753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.48  E-value=3.5e-07  Score=85.93  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ..++.++|.+|.++|+|++|++.++++++++|+++.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            34455666666666666666666666666666666666666666666666666666666666666554

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=98.48  E-value=1.1e-07  Score=97.30  Aligned_cols=43  Identities=26%  Similarity=0.579  Sum_probs=36.7

Q ss_pred             ccccccCCCcCCcEEE--EeC------CEEEEEEeecCCCCCceeeecCCC
Q 048211          379 AGSLFNHSCLPNIHAY--FLS------RTLMIRTTEFVPSGYPLELSYGPQ  421 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~--f~g------~~~~vrA~r~I~~GeeI~isY~~~  421 (665)
                      .+.++||||+||+...  +.+      .++.++|+|||++|||||++|+..
T Consensus       215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~  265 (300)
T 2r3a_A          215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMK  265 (300)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGS
T ss_pred             hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCC
Confidence            5679999999999764  221      489999999999999999999975

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=98.48  E-value=5.9e-08  Score=105.55  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=56.5

Q ss_pred             eEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeee
Q 048211          372 VGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRC  442 (665)
Q Consensus       372 ~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C  442 (665)
                      .+.+|.|.+.|+||||.||+.+.|+++.++++|.++|++||||+||||+.    +    ...|...|+|..
T Consensus       215 ~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~~----~----n~~ll~~YGF~~  277 (449)
T 3qxy_A          215 NSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM----A----NWQLIHMYGFVE  277 (449)
T ss_dssp             CCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSSC----C----HHHHHHHHSCCC
T ss_pred             CceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCCC----C----HHHHHHhCCCCC
Confidence            56789999999999999999999999999999999999999999999974    2    355667899985

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=98.47  E-value=1.3e-07  Score=103.90  Aligned_cols=91  Identities=14%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             ccHHHHHHHHhhhhcceeeccccccCCCCCCCCCCCCCccccccceeEEEeccccccccCCCcCCcEE-EEeCCEEEEEE
Q 048211          326 ASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHA-YFLSRTLMIRT  404 (665)
Q Consensus       326 ~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~-~f~g~~~~vrA  404 (665)
                      .+.......++.+..++|.+...   +         |       ...+.+|+|.+.|+||||.||... .++++.+.++|
T Consensus       238 ~t~e~f~wA~~~v~SRa~~~~~~---~---------g-------~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a  298 (497)
T 3smt_A          238 FTYEDYRWAVSSVMTRQNQIPTE---D---------G-------SRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVA  298 (497)
T ss_dssp             CCHHHHHHHHHHHHHHCEEEECT---T---------S-------SSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEE
T ss_pred             cCHHHHHHhhheEecccccccCc---c---------c-------ccccceeechHHhhcCCCcccceeeeccCCeEEEEe
Confidence            35566666677788888887531   1         1       235789999999999999997543 34568899999


Q ss_pred             eecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeee
Q 048211          405 TEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQ  443 (665)
Q Consensus       405 ~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~  443 (665)
                      .++|++||||+||||+.    +    ...|...|+|.+.
T Consensus       299 ~~~i~~Geei~isYG~~----~----n~~Ll~~YGFv~~  329 (497)
T 3smt_A          299 LQDFRAGEQIYIFYGTR----S----NAEFVIHSGFFFD  329 (497)
T ss_dssp             SSCBCTTCEEEECCCSC----C----HHHHHHHHSCCCT
T ss_pred             CCccCCCCEEEEeCCCC----C----hHHHHHHCCCCCC
Confidence            99999999999999974    2    2566678999964

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.46  E-value=3.5e-07  Score=80.46  Aligned_cols=69  Identities=17%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..+.++|.++++.|++++|+..+++|++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~   86 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   86 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            347889999999999999999999999999999999999999999999999999999999999999764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.45  E-value=1.2e-06  Score=82.20  Aligned_cols=72  Identities=14%  Similarity=0.254  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.+|.|+|.+|.++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|+..+.++....|++...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   75 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA   75 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999998644

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.45  E-value=1.5e-06  Score=76.29  Aligned_cols=70  Identities=9%  Similarity=-0.035  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.++|.++..+|++++|+..+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus        50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           50 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            5678999999999999999999999999999999999999999999999999999999999999999864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.43  E-value=1.9e-06  Score=73.37  Aligned_cols=69  Identities=9%  Similarity=0.079  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +..+.++|.+++..|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..++++++++|++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG   72 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence            445666666666666666666666666666666666666666666666666666666666666666654

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=98.43  E-value=6.4e-08  Score=99.39  Aligned_cols=42  Identities=31%  Similarity=0.338  Sum_probs=35.3

Q ss_pred             cccccCCCcCCcEEEEe-C---CE-EEEEEeecCCCCCceeeecCCC
Q 048211          380 GSLFNHSCLPNIHAYFL-S---RT-LMIRTTEFVPSGYPLELSYGPQ  421 (665)
Q Consensus       380 ~Sl~NHSC~PN~~~~f~-g---~~-~~vrA~r~I~~GeeI~isY~~~  421 (665)
                      +.++||||+||+...+. .   .+ +.|+|+|||++|||||++|+..
T Consensus       241 ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~  287 (293)
T 1h3i_A          241 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD  287 (293)
T ss_dssp             GGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETT
T ss_pred             eeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCC
Confidence            56899999999987762 2   23 5899999999999999999854

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.43  E-value=7.2e-07  Score=77.08  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.++.++|.+|+.+|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++++++.|+.
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            457899999999999999999999999999999999999999999999999999999999999998754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.43  E-value=1.7e-06  Score=79.03  Aligned_cols=84  Identities=6%  Similarity=0.070  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      .+.++.++|.+|..+|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++.....+..++.
T Consensus        54 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  133 (148)
T 2vgx_A           54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS  133 (148)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999998766556666666


Q ss_pred             HHHh
Q 048211           91 IILD   94 (665)
Q Consensus        91 ~~~~   94 (665)
                      .+++
T Consensus       134 ~~l~  137 (148)
T 2vgx_A          134 SMLE  137 (148)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.41  E-value=1.6e-06  Score=83.76  Aligned_cols=72  Identities=13%  Similarity=0.051  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.++.++|.+|.++|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++...
T Consensus        53 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a  124 (208)
T 3urz_A           53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA  124 (208)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            344445599999999999999999999999999999999999999999999999999999999999998643

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=98.40  E-value=1.9e-07  Score=85.16  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             cccccCCCcC---CcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211          380 GSLFNHSCLP---NIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       380 ~Sl~NHSC~P---N~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      +-++||||.|   |+...-.++++.++|+|||++||||++.|++.+
T Consensus       100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~~  145 (149)
T 2qpw_A          100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGED  145 (149)
T ss_dssp             GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCCC
T ss_pred             eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCcc
Confidence            5699999999   998877788999999999999999999999764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.40  E-value=2.4e-06  Score=76.94  Aligned_cols=84  Identities=10%  Similarity=0.122  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                      .+.+|.++|.+|.++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.....+..++.
T Consensus        51 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  130 (142)
T 2xcb_A           51 DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG  130 (142)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999998766556666665


Q ss_pred             HHHh
Q 048211           91 IILD   94 (665)
Q Consensus        91 ~~~~   94 (665)
                      .+++
T Consensus       131 ~~l~  134 (142)
T 2xcb_A          131 AMLE  134 (142)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.36  E-value=3.3e-06  Score=74.77  Aligned_cols=68  Identities=29%  Similarity=0.417  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .+.++.|+|.+|+.+|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           42 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            46789999999999999999999999999999999999999999999999999999999999999887

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.34  E-value=3.1e-06  Score=73.97  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=64.4

Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .........+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            3445678888888888889999999999999998888888888888899888889999999888888888887653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.31  E-value=6.6e-06  Score=71.26  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ...+..+.+.|..++..|+|++|+..++++++.+|+++.+++.+|.++..+|++++|++.++++++++|++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   80 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence            346667777777777777777777777777777777777777777777777777777777777777777654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.29  E-value=4.6e-06  Score=86.03  Aligned_cols=91  Identities=16%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      .|.+......++.++|.+|.++|++++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++....
T Consensus       264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  343 (359)
T 3ieg_A          264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR  343 (359)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence            34455566788999999999999999999999999999999999999999999999999999999999999999988666


Q ss_pred             HHHHHHHHHHh
Q 048211           84 QIESELKIILD   94 (665)
Q Consensus        84 ~~~~~l~~~~~   94 (665)
                      .....+...++
T Consensus       344 ~~l~~~~~~~~  354 (359)
T 3ieg_A          344 EGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666655554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.29  E-value=6.5e-06  Score=75.04  Aligned_cols=70  Identities=24%  Similarity=0.356  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.++.++|.++..+|+|++|+..+.++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  116 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD  116 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence            5667788888888888888888888888888888888888888888888888888888888888777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.29  E-value=3.1e-06  Score=97.65  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=64.7

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.+-.+.+|.|+|.+|.++|+|++|+..+++||+++|+++.+|+++|.++..+|++++|++.|++|++++|++..
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~   78 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD   78 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            445578889999999999999999999999999999999999999999999999999999999999999988753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.27  E-value=3.5e-06  Score=77.54  Aligned_cols=73  Identities=8%  Similarity=0.025  Sum_probs=68.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQI------------------CPSYAKAWYRRGKVNVSLENHDDAVHDLT   70 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~------------------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~   70 (665)
                      --.+..+.++|..+++.|+|++|+..+.+|+++                  +|.++.+|+++|.|+..+|+|++|+.+++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            347889999999999999999999999999999                  77788999999999999999999999999


Q ss_pred             HHHhcCCChHH
Q 048211           71 IAKNRESSLAG   81 (665)
Q Consensus        71 ~al~l~p~~~~   81 (665)
                      ++++++|++..
T Consensus        88 ~al~~~p~~~~   98 (162)
T 3rkv_A           88 EVLKREETNEK   98 (162)
T ss_dssp             HHHHHSTTCHH
T ss_pred             HHHhcCCcchH
Confidence            99999999763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.25  E-value=3.1e-06  Score=90.22  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~   81 (665)
                      -.+.+|.+++.++.++|++++|+..+++||+++|+++.+|+.+|.++..+|+ +++|++.|+++++++|++..
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~  167 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ  167 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence            3667778888888888888888888888888888888888888888888886 88888888888888887654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.25  E-value=1.1e-06  Score=89.36  Aligned_cols=69  Identities=29%  Similarity=0.404  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.+|.|+|.+|.++|+|++|+.++++|++++|+++++++++|.++..+|++++|+..|+++++++|++
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            467889999999999999999999999999999999999999999999999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.24  E-value=4e-06  Score=81.57  Aligned_cols=70  Identities=16%  Similarity=0.108  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.++.++|.++++.|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~   74 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG   74 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            3468888999999999999999999999999999999999999999999999999999999999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.21  E-value=5.9e-06  Score=71.71  Aligned_cols=66  Identities=24%  Similarity=0.355  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .++.++|.+|..+|+|++|+..+.++++.+|++       +.+|+++|.++..+|++++|++.|++++++.|+
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            445555555555555555555555555554444       555555555555555555555555555555553

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.21  E-value=4.5e-06  Score=91.79  Aligned_cols=79  Identities=24%  Similarity=0.303  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL   89 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l   89 (665)
                      .+.+|.|+|.+|.++|+|++|+..+++|++++|+++++|+++|.++..+|++++|++.|+++++++|++.........+
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999999999999876543333333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.21  E-value=1e-05  Score=70.58  Aligned_cols=72  Identities=25%  Similarity=0.370  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...++.++|.+|..+|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++...
T Consensus        49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  120 (133)
T 2lni_A           49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA  120 (133)
T ss_dssp             CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHH
Confidence            367899999999999999999999999999999999999999999999999999999999999999987643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.18  E-value=7.3e-06  Score=69.00  Aligned_cols=69  Identities=20%  Similarity=0.248  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS--LA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~--~~   80 (665)
                      +.++.++|.++++.|+|++|+..++++++.+|.++.+|+.+|.++..+|++++|+..|+++++++|+  +.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence            4457889999999999999999999999999999999999999999999999999999999999998  65

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.18  E-value=9.9e-06  Score=75.42  Aligned_cols=67  Identities=12%  Similarity=0.048  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCh
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKV-NVSLENH--DDAVHDLTIAKNRESSL   79 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~-~~~l~~~--~~A~~~~~~al~l~p~~   79 (665)
                      .++.++|.+|+.+|+|++|+..+.++++++|+++.+++.+|.+ +...|++  ++|+..|+++++++|++
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence            3444455555555555555555555555555555555555555 4444554  55555555555554444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.18  E-value=5.3e-06  Score=69.89  Aligned_cols=69  Identities=10%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSL-ENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l-~~~~~A~~~~~~al~l~p~~   79 (665)
                      ...++.++|.+|+.+|+|++|+..++++++.+|+  ++.+|+.+|.++..+ |++++|++.+++++...|++
T Consensus        39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           39 ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            3567899999999999999999999999999999  999999999999999 99999999999999998875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.18  E-value=7.8e-06  Score=79.44  Aligned_cols=49  Identities=16%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL   59 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l   59 (665)
                      .+.++.++|.++.++|++++|+..++++++++|+++.+|+.+|.++..+
T Consensus        38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   86 (217)
T 2pl2_A           38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL   86 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            4677899999999999999999999999999999999999999998776

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.17  E-value=7.3e-06  Score=94.55  Aligned_cols=71  Identities=28%  Similarity=0.360  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.+|.|+|.+|.++|++++|+..+++|++++|+++.+|+++|.++..+|++++|++.|+++++++|++..
T Consensus        42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~  112 (723)
T 4gyw_A           42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD  112 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            46678888888888888888888888888888888888888888888888888888888888888888753

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.15  E-value=7.7e-06  Score=78.34  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +.++.|+|.+|.++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|++.|++++++.|++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence            45677777777777777777777777777777777777777777777777777777777777766554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.15  E-value=2.4e-05  Score=66.29  Aligned_cols=73  Identities=19%  Similarity=0.295  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      ...++.++|.++..+|+|++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++....
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  109 (118)
T 1elw_A           37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK  109 (118)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence            3668999999999999999999999999999999999999999999999999999999999999999987443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.14  E-value=1e-05  Score=78.62  Aligned_cols=70  Identities=11%  Similarity=0.140  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICP-SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p-~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +..+.++|.++++.|+|++|+..++++++++| .++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   77 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN   77 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH
Confidence            46788888888888888888888888888887 78888888888888888888888888888888888753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.12  E-value=1.3e-05  Score=85.39  Aligned_cols=73  Identities=14%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211           11 VATLYVNRASVLQKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      .+.+|.||+.++..+|+ +++|+..+++||+++|+++.+|+.+|.++..+|++++|+..|+++++++|++....
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence            57789999999999997 99999999999999999999999999999999999999999999999999987543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.12  E-value=2e-05  Score=65.78  Aligned_cols=82  Identities=13%  Similarity=0.043  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDH---LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~---~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      .+.++..+|.+++..+.   .++|..-+++||++||+++++++-+|..++..|+|++|+..++++++.+|.+..+..+.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~   84 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE   84 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            45668888999976665   799999999999999999999999999999999999999999999999998555555555


Q ss_pred             HHHHH
Q 048211           88 ELKII   92 (665)
Q Consensus        88 ~l~~~   92 (665)
                      .+...
T Consensus        85 ~I~~A   89 (93)
T 3bee_A           85 SINKA   89 (93)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.11  E-value=1.1e-05  Score=70.34  Aligned_cols=68  Identities=15%  Similarity=0.026  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..+.++|.++++.|+|++|+..++++++.+|+++   .+++.+|.++..+|+|++|+..|+++++..|++.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD   73 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence            3578899999999999999999999999999987   8999999999999999999999999999999873

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.10  E-value=3.5e-05  Score=65.94  Aligned_cols=70  Identities=21%  Similarity=0.318  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.+.|.++...|++++|+..+.++++.+|+++.+++.+|.++...|++++|+..|+++++..|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   77 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence            4678889999999999999999999999999999999999999999999999999999999999988765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.06  E-value=5.2e-06  Score=80.81  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH--------------------------
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSLENH--------------------------   62 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l~~~--------------------------   62 (665)
                      ++.+|.++|.++..+|+|++|+..+++|++++|+  ++.+|+.+|.++..+|+.                          
T Consensus       116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  195 (228)
T 4i17_A          116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAA  195 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999  999999999999999998                          


Q ss_pred             -HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211           63 -DDAVHDLTIAKNRESSLAGKKQIESELK   90 (665)
Q Consensus        63 -~~A~~~~~~al~l~p~~~~~~~~~~~l~   90 (665)
                       ++|+..|+++++++|++.....+...++
T Consensus       196 ~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          196 FKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence             9999999999999999986555554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.05  E-value=2.3e-05  Score=79.61  Aligned_cols=71  Identities=15%  Similarity=0.100  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+..+.++|.++++.|+|++|+..+++|++.+|+++.+|+.+|.++..+|+|++|+.+|+++++++|++..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   73 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999863

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.05  E-value=2e-06  Score=63.46  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=35.3

Q ss_pred             ccccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCc
Q 048211          159 HCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPM  206 (665)
Q Consensus       159 ~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~  206 (665)
                      ......|..|.++   .+.+|++|..+.|||.+||..+|.. |+.+|.
T Consensus         6 ~~~~~~C~~C~~~---~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~   49 (52)
T 2jw6_A            6 ERKEQSCVNCGRE---AMSECTGCHKVNYCSTFCQRKDWKD-HQHICG   49 (52)
T ss_dssp             -----CCSSSSSS---CSEECTTTCSSEESSHHHHHHHTTT-GGGTTT
T ss_pred             cccCCcCCCCCCC---CcCcCCCCCCEeecCHHHHHHHHHH-HCHHHc
Confidence            3456789999985   4789999999999999999999985 888885

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.05  E-value=5.6e-05  Score=65.17  Aligned_cols=72  Identities=31%  Similarity=0.399  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.++.++|.++..+|++++|+..+.++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++...
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  116 (131)
T 2vyi_A           45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY  116 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHH
Confidence            367899999999999999999999999999999999999999999999999999999999999999987643

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.03  E-value=2.3e-06  Score=65.07  Aligned_cols=43  Identities=16%  Similarity=0.443  Sum_probs=37.6

Q ss_pred             ccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211          161 RETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME  207 (665)
Q Consensus       161 ~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~  207 (665)
                      ....|..|.+.   .+.+|++|..++|||++||..+|. .|+.+|..
T Consensus        14 ~~~~C~~C~~~---~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~   56 (60)
T 2dj8_A           14 SSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE-KHHHICSG   56 (60)
T ss_dssp             CSCCCSSSCSC---CCEECTTTSCCEESSHHHHHHTHH-HHTTTSCC
T ss_pred             CCcccccCCCC---CcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHh
Confidence            45789999984   478999999999999999999998 58888865

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.03  E-value=3.7e-05  Score=69.88  Aligned_cols=72  Identities=18%  Similarity=0.094  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..+..+.++|.+++..|+|++|+..+.++++.+|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~   82 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK   82 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            478899999999999999999999999999999999999999999999999999999999999999998753

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=98.02  E-value=3.5e-06  Score=91.58  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             cHHHHHHHHhhhhcceeeccccccCCCCCCCCCCCCCccccccceeEEEeccccccccCCCcCCc---EEEEe-------
Q 048211          327 SVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNI---HAYFL-------  396 (665)
Q Consensus       327 ~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~---~~~f~-------  396 (665)
                      +.....-..+.+...+|.+..                       ..+.+|.|.+-|+||||.||+   .+.++       
T Consensus       160 t~~~f~wA~~~v~SRaf~~~~-----------------------~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~  216 (440)
T 2h21_A          160 TLDDFFWAFGILRSRAFSRLR-----------------------NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFS  216 (440)
T ss_dssp             CHHHHHHHHHHHHHHCBCCC--------------------------CCBCCSSTTSCEECTTCCCCCCEEEC--------
T ss_pred             CHHHHHHHHHHhcccceeccC-----------------------CCceEEeechHhhcCCCCcccccceeeecCcccccC
Confidence            455555566667777775421                       124689999999999999974   33332       


Q ss_pred             -CCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeee
Q 048211          397 -SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQ  443 (665)
Q Consensus       397 -g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~  443 (665)
                       ++.++++|.++|++||||+||||+.   .+.    ..|...|+|...
T Consensus       217 ~~~~~~l~a~~~i~~Geei~~sYG~~---~~N----~~LL~~YGFv~~  257 (440)
T 2h21_A          217 WDYLFSLKSPLSVKAGEQVYIQYDLN---KSN----AELALDYGFIEP  257 (440)
T ss_dssp             --CEEEEEESSCBCTTSBCEECSCTT---CCH----HHHHHHSSCCCS
T ss_pred             CCceEEEEECCCCCCCCEEEEeCCCC---CCH----HHHHHhCCCCcC
Confidence             3579999999999999999999974   132    345568999854

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.01  E-value=2.3e-05  Score=75.53  Aligned_cols=71  Identities=7%  Similarity=-0.012  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYR----------------RGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r----------------~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      +..+.++|..+++.|+|++|+..++++++.+|+++.+|+.                +|.++..+|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCChHHH
Q 048211           76 ESSLAGK   82 (665)
Q Consensus        76 ~p~~~~~   82 (665)
                      +|++...
T Consensus        84 ~p~~~~~   90 (208)
T 3urz_A           84 APNNVDC   90 (208)
T ss_dssp             CTTCHHH
T ss_pred             CCCCHHH
Confidence            9998643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.00  E-value=3.1e-05  Score=80.82  Aligned_cols=72  Identities=14%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---------------AKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      ..+.++.++|.+|+++|+|++|+..+++|++++|++               +.+|+++|.++..+|+|++|+..|+++++
T Consensus       145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999998               69999999999999999999999999999


Q ss_pred             cCCChHH
Q 048211           75 RESSLAG   81 (665)
Q Consensus        75 l~p~~~~   81 (665)
                      ++|++..
T Consensus       225 ~~p~~~~  231 (336)
T 1p5q_A          225 LDSNNEK  231 (336)
T ss_dssp             HCTTCHH
T ss_pred             hCCCcHH
Confidence            9999863

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.00  E-value=3.3e-05  Score=82.86  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=77.7

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      .|.+......++.+++.++.++|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++....
T Consensus       287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  366 (450)
T 2y4t_A          287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR  366 (450)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence            34445556789999999999999999999999999999999999999999999999999999999999999999987655


Q ss_pred             HHHHHHHHHH
Q 048211           84 QIESELKIIL   93 (665)
Q Consensus        84 ~~~~~l~~~~   93 (665)
                      .....+...+
T Consensus       367 ~~l~~~~~~~  376 (450)
T 2y4t_A          367 EGLEKAQRLL  376 (450)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5554444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.98  E-value=2.7e-05  Score=76.18  Aligned_cols=73  Identities=11%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +..+.++.++|.+++.+|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  208 (258)
T 3uq3_A          136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR  208 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999999999998753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.96  E-value=4e-05  Score=78.28  Aligned_cols=75  Identities=11%  Similarity=-0.028  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCChHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDA-VHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A-~~~~~~al~l~p~~~~~~~~   85 (665)
                      .+.++.|+|.++.++|+|++|+..+++|++++|+++.+|+++|.++..+|++.++ .+.++++++++|++..+..+
T Consensus       199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            3456777888888888888888888888888888888888888888888887654 46667777788877655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.94  E-value=3.5e-05  Score=84.06  Aligned_cols=72  Identities=14%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---------------AKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      ..+.++.++|.+|+++|+|++|+..+++|++++|++               ..+|+++|.|+..+|+|++|+.+|+++++
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999998               79999999999999999999999999999


Q ss_pred             cCCChHH
Q 048211           75 RESSLAG   81 (665)
Q Consensus        75 l~p~~~~   81 (665)
                      ++|++..
T Consensus       346 ~~p~~~~  352 (457)
T 1kt0_A          346 LDSANEK  352 (457)
T ss_dssp             HSTTCHH
T ss_pred             cCCccHH
Confidence            9999863

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.94  E-value=5.5e-05  Score=74.96  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.+..+.++.++|.+|+.+|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus        38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  112 (275)
T 1xnf_A           38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  112 (275)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH
Confidence            345678999999999999999999999999999999999999999999999999999999999999999998753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.94  E-value=0.0001  Score=62.86  Aligned_cols=71  Identities=21%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ..++.++|.++.+.|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++...
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  113 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA  113 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999988643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.93  E-value=3e-05  Score=74.14  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----------------KAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----------------ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      .+.++.|+|.+|+.+|+|++|+..+++++++.|++.                .+|+.+|.++..+|++++|++.|+++++
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999888766                9999999999999999999999999999


Q ss_pred             cCCChH
Q 048211           75 RESSLA   80 (665)
Q Consensus        75 l~p~~~   80 (665)
                      ++|++.
T Consensus       150 ~~p~~~  155 (213)
T 1hh8_A          150 MKSEPR  155 (213)
T ss_dssp             TCCSGG
T ss_pred             cCcccc
Confidence            999864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.92  E-value=7e-05  Score=66.52  Aligned_cols=73  Identities=15%  Similarity=0.096  Sum_probs=68.2

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +..+..+.++|..++..|+|++|+..++++++.+|++   +.+|+.+|.++..+|+|++|+..++++++++|++..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            3467889999999999999999999999999999997   899999999999999999999999999999998753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.89  E-value=0.0001  Score=62.65  Aligned_cols=82  Identities=7%  Similarity=-0.135  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC-------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~-------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      .+.-....|..+++.++|..|+.++..|++..       +..+..+...|.|+.++|+++.|+..++++++++|++....
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34556789999999999999999999999873       24578899999999999999999999999999999987543


Q ss_pred             HHHHHHHHH
Q 048211           84 QIESELKII   92 (665)
Q Consensus        84 ~~~~~l~~~   92 (665)
                      .-..-++.+
T Consensus        84 ~n~~~~~~~   92 (104)
T 2v5f_A           84 GNLKYFEYI   92 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             hhHHHHHHH
Confidence            333334443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.89  E-value=9e-05  Score=70.39  Aligned_cols=72  Identities=7%  Similarity=-0.007  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----------------KAWYRRGKVNVSLENHDDAVHDLTIAK   73 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----------------ka~~r~a~~~~~l~~~~~A~~~~~~al   73 (665)
                      ..+..+.++|..+++.|+|++|+..+.+|+++.|.++                .+|+.+|.++..+|+|++|+..+++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3678899999999999999999999999999998887                899999999999999999999999999


Q ss_pred             hcCCChHH
Q 048211           74 NRESSLAG   81 (665)
Q Consensus        74 ~l~p~~~~   81 (665)
                      +++|++..
T Consensus       116 ~~~p~~~~  123 (198)
T 2fbn_A          116 KIDKNNVK  123 (198)
T ss_dssp             HHSTTCHH
T ss_pred             HhCcccHH
Confidence            99998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.87  E-value=4.9e-05  Score=74.08  Aligned_cols=70  Identities=4%  Similarity=-0.153  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +..+.++|..+++.|+|++|+..++++++.+|+.   +.+++.+|.++..+|+|++|++.|+++++..|++..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            5678899999999999999999999999998875   489999999999999999999999999999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.86  E-value=3.3e-05  Score=66.78  Aligned_cols=69  Identities=10%  Similarity=-0.002  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+..+.+.|..++..|+|++|+..+.++++.+|.++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            467889999999999999999999999999999999999999999999999999999999999987654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.85  E-value=3.4e-05  Score=88.62  Aligned_cols=72  Identities=10%  Similarity=0.018  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.++.++|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++...
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~  503 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP  503 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            456899999999999999999999999999999999999999999999999999999999999999998643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.83  E-value=8.2e-05  Score=73.93  Aligned_cols=73  Identities=7%  Similarity=-0.119  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ..+..+.++|..+++.|+|++|+..++++++.+|++   +.+++.+|.++..+|+|++|+..|++++++.|++...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            356789999999999999999999999999999998   9999999999999999999999999999999976533

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.83  E-value=2.6e-05  Score=77.40  Aligned_cols=67  Identities=13%  Similarity=0.138  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQIC--PSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~--p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ++.++|.+|+.+|+|++|+..++++++..  |.. +.+|+.+|.++..+|++++|++.|+++++++|++.
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~  108 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL  108 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence            46677777777777777777777777732  122 45577777777777777777777777777777654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.81  E-value=0.00011  Score=68.14  Aligned_cols=83  Identities=13%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211           11 VATLYVNRASV-LQKRDHL--VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES   87 (665)
Q Consensus        11 ~a~~~~NRa~~-~~~l~~~--~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~   87 (665)
                      .+.++.++|.+ ++..|++  ++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++.....+..
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  156 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE  156 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            35688999999 8899999  99999999999999999999999999999999999999999999999999876666666


Q ss_pred             HHHHHH
Q 048211           88 ELKIIL   93 (665)
Q Consensus        88 ~l~~~~   93 (665)
                      .+....
T Consensus       157 ~i~~~~  162 (177)
T 2e2e_A          157 SINMAK  162 (177)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.00015  Score=70.88  Aligned_cols=73  Identities=27%  Similarity=0.469  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CChHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE------SSLAGKK   83 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~------p~~~~~~   83 (665)
                      .+.++.++|.+|.++|++++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++      |++....
T Consensus       172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~  250 (258)
T 3uq3_A          172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID  250 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999998      7776443

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=97.80  E-value=7.9e-06  Score=62.09  Aligned_cols=45  Identities=16%  Similarity=0.401  Sum_probs=37.9

Q ss_pred             ccccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211          159 HCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME  207 (665)
Q Consensus       159 ~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~  207 (665)
                      ......|..|.+.   .+.+|++|..++|||.+||..+|. .|+.+|..
T Consensus        10 ~~~~~~C~~C~~~---~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~   54 (60)
T 2od1_A           10 SDSSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ   54 (60)
T ss_dssp             -CCSSCCTTTSSC---CCEECTTTSCCEESSHHHHHHHHH-HHTTTSSC
T ss_pred             CCCCCccccCCCc---ccccCCCCCCeeecCHHHHHHHHH-HHhHHHcc
Confidence            3456789999984   478999999999999999999998 58888864

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.80  E-value=0.0001  Score=71.71  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=46.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAK---AWYRRGKVNVSLENH   62 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k---a~~r~a~~~~~l~~~   62 (665)
                      .....++.++|.+|+++|+|++|+..++++++.+|+++.   +++.+|.++..++..
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~   94 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS   94 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence            345678999999999999999999999999999998764   899999999887753

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.80  E-value=7.1e-05  Score=74.39  Aligned_cols=78  Identities=10%  Similarity=-0.006  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCChHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSL----------ENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l----------~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.++|.+|+++|+|++|+..++++++.+|+   .+++++++|.++..+          |++++|+..|+++++..|++..
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            489999999999999999999999999998   578999999999988          9999999999999999999865


Q ss_pred             HHHHHHHHHHH
Q 048211           82 KKQIESELKII   92 (665)
Q Consensus        82 ~~~~~~~l~~~   92 (665)
                      .......+..+
T Consensus       231 ~~~a~~~l~~~  241 (261)
T 3qky_A          231 LRTAEELYTRA  241 (261)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            54444444443

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=97.76  E-value=7.2e-06  Score=64.23  Aligned_cols=42  Identities=24%  Similarity=0.611  Sum_probs=37.1

Q ss_pred             cccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211          162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME  207 (665)
Q Consensus       162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~  207 (665)
                      ...|..|.+.   .+.+|++|..++|||.+||..+|.. |+.+|..
T Consensus        15 ~~~C~~C~~~---~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~   56 (70)
T 2d8q_A           15 RPRCAYCSAE---ASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVL   56 (70)
T ss_dssp             CCBCSSSCCB---CCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCC
T ss_pred             CCcCCCCCCc---ccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHH
Confidence            5689999985   4789999999999999999999987 8888864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.76  E-value=8.3e-05  Score=73.65  Aligned_cols=71  Identities=13%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.++.++|.+|..+|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF  146 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH
Confidence            46689999999999999999999999999999999999999999999999999999999999999999863

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.76  E-value=7.2e-05  Score=81.98  Aligned_cols=71  Identities=10%  Similarity=0.044  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKR--------DHLVECLRDCNRAVQICP---SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l--------~~~~~al~d~~~al~~~p---~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.+|.|+|.+|..+        |+|++|+..+++|++++|   +++.+|+.+|.++..+|+|++|++.|+++++++|++
T Consensus       212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            467899999999999        999999999999999999   999999999999999999999999999999999998


Q ss_pred             HH
Q 048211           80 AG   81 (665)
Q Consensus        80 ~~   81 (665)
                      ..
T Consensus       292 ~~  293 (474)
T 4abn_A          292 PE  293 (474)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.75  E-value=0.00012  Score=63.17  Aligned_cols=69  Identities=22%  Similarity=0.318  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..++.+.+.++...|++++|+..++++++.+|+.+.+++.+|.++...|++++|+..++++++..|++.
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            567889999999999999999999999999999999999999999999999999999999999998765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.73  E-value=0.00012  Score=76.15  Aligned_cols=78  Identities=14%  Similarity=0.048  Sum_probs=69.9

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .|.++...+..+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  133 (368)
T 1fch_A           56 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT  133 (368)
T ss_dssp             CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH
Confidence            333333345668899999999999999999999999999999999999999999999999999999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.73  E-value=0.00013  Score=66.33  Aligned_cols=84  Identities=10%  Similarity=0.007  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211           11 VATLYVNRASVLQKRD---HLVECLRDCNRAVQIC-P-SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~---~~~~al~d~~~al~~~-p-~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~   85 (665)
                      ...+.+|-|.++.+.+   +.++++.-++.+++.+ | +..+++|.+|.+++++|+|+.|++.++++++++|+|.....+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4577899999999998   6789999999999998 7 578999999999999999999999999999999999877777


Q ss_pred             HHHHHHHHh
Q 048211           86 ESELKIILD   94 (665)
Q Consensus        86 ~~~l~~~~~   94 (665)
                      ++.++..+.
T Consensus       111 k~~ie~~~~  119 (152)
T 1pc2_A          111 ERLIDKAMK  119 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.67  E-value=9.3e-05  Score=75.27  Aligned_cols=72  Identities=19%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.++.++|.+|.++|++++|+..++++++++|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus       235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (330)
T 3hym_B          235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS  306 (330)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence            457899999999999999999999999999999999999999999999999999999999999999998743

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.66  E-value=0.00011  Score=77.69  Aligned_cols=71  Identities=11%  Similarity=0.140  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQ----------------ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~----------------~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      .+..+.++|..+++.|+|++|+..+++|++                ++|.++.+|+++|.++..+|+|++|++.++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            577899999999999999999999999999                7788899999999999999999999999999999


Q ss_pred             cCCChHH
Q 048211           75 RESSLAG   81 (665)
Q Consensus        75 l~p~~~~   81 (665)
                      ++|++..
T Consensus       302 ~~p~~~~  308 (370)
T 1ihg_A          302 IDPSNTK  308 (370)
T ss_dssp             TCTTCHH
T ss_pred             hCchhHH
Confidence            9998753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.66  E-value=0.00026  Score=73.73  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.++.++|.+|.++|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  282 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR  282 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence            46688999999999999999999999999999999999999999999999999999999999999998753

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.66  E-value=0.00034  Score=66.60  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +..+.++.++|.+++..|++++|+..+.++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   77 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE   77 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            4567889999999999999999999999999999999999999999999999999999999999999998753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.65  E-value=0.0002  Score=74.54  Aligned_cols=72  Identities=17%  Similarity=0.031  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..+..+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  134 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK  134 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence            345568999999999999999999999999999999999999999999999999999999999999998753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.64  E-value=0.00011  Score=80.66  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=68.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...+..+.++|..+++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~   95 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA   95 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999997643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.64  E-value=0.00012  Score=70.95  Aligned_cols=70  Identities=19%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..++.++|.++.++|++++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++.+|++..
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  194 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD  194 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            5578899999999999999999999999999999999999999999999999999999999999988754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.64  E-value=8e-05  Score=81.62  Aligned_cols=69  Identities=17%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           10 LVATLYVNRASVLQKRDHL-VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~-~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ..+.++.++|.+|+.+|+| ++|++.+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|+
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4678899999999999999 99999999999999999999999999999999999999999999999998

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.64  E-value=0.00033  Score=66.71  Aligned_cols=71  Identities=13%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES-SLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p-~~~~   81 (665)
                      ...++.++|.++.++|++++|+..+.++++.+|+++.+++.+|.++..+|++++|++.+++++++.| ++..
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  183 (225)
T 2vq2_A          112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD  183 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence            4567778888888888888888888888888888888888888888888888888888888888877 6543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.64  E-value=0.00013  Score=79.33  Aligned_cols=68  Identities=22%  Similarity=0.342  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +.++.++|.+|+++|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|.+
T Consensus        39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            45666677777777777777777777777777777777777777777777777777777777666643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.63  E-value=0.00025  Score=79.32  Aligned_cols=67  Identities=16%  Similarity=0.137  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .++.++|.+|.++|+|++|++.+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   90 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH   90 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            4455555555555555555555555555555555555555555555555555555555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.62  E-value=0.00034  Score=60.23  Aligned_cols=68  Identities=21%  Similarity=0.311  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .++.+.|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++..|++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence            46889999999999999999999999999999999999999999999999999999999999998865

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.62  E-value=4.1e-05  Score=70.23  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=53.9

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCChH
Q 048211           23 QKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH----------DDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        23 ~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~   80 (665)
                      -+++.|++|+..+++|++++|+++.+|++.|.++..++++          ++|+..|++|++++|++.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~   80 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence            4667899999999999999999999999999999999875          599999999999999975

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.62  E-value=0.00047  Score=63.16  Aligned_cols=69  Identities=14%  Similarity=0.013  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ..++.++|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|++.++++++..|++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  110 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF  110 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence            566777888888888888888888888888888888888888888888888888888888888777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.61  E-value=1.4e-05  Score=67.51  Aligned_cols=61  Identities=16%  Similarity=0.210  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTI   71 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~   71 (665)
                      .+.++.|+|.+|+++|+|++|+..++++++++|++      +++++++|.++..+|++++|++.+++
T Consensus        37 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           37 NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            36789999999999999999999999999999998      99999999999999998888766553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.60  E-value=7.6e-05  Score=85.73  Aligned_cols=71  Identities=8%  Similarity=-0.043  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.+|.|+|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+|+|++ ++.|+++++++|++...
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a  536 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA  536 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH
Confidence            467899999999999999999999999999999999999999999999999999 99999999999998743

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.58  E-value=0.00043  Score=71.75  Aligned_cols=71  Identities=10%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.++.++|.+|.++|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  286 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  286 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999998753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.57  E-value=0.00037  Score=68.12  Aligned_cols=74  Identities=19%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +...+.++.++|.+++..|++++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus        33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  106 (252)
T 2ho1_A           33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR  106 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence            34458999999999999999999999999999999999999999999999999999999999999999998753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.57  E-value=0.00018  Score=75.66  Aligned_cols=69  Identities=14%  Similarity=0.110  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +.++..++.++++.|++++|+..++.+++.+|.++.+|+.+|.++...|++++|++.|+++++++|++.
T Consensus        33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  101 (388)
T 1w3b_A           33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence            455677888888888888888888888888888888888888888888888888888888888888765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.56  E-value=0.00063  Score=62.31  Aligned_cols=74  Identities=8%  Similarity=-0.012  Sum_probs=68.4

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ....+.++.++|.+++..|++++|+..++++++.+|+++.+++.+|.++...|++++|++.+++++++.|++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   77 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK   77 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999988653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.56  E-value=7.2e-05  Score=69.70  Aligned_cols=66  Identities=9%  Similarity=-0.027  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++|..+++.|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+| +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~   73 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN   73 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence            4678999999999999999999999999999999999999999999999999999999999999 54

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.56  E-value=0.00028  Score=78.87  Aligned_cols=72  Identities=11%  Similarity=-0.063  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.++.|+|.+|..+|++++|++.+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  127 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI  127 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999998643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.56  E-value=0.0005  Score=70.50  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +..+.+.|.+++..|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   72 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA   72 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch
Confidence            5678999999999999999999999999999999999999999999999999999999999999998763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.55  E-value=0.00066  Score=66.29  Aligned_cols=70  Identities=6%  Similarity=-0.038  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.++|.+|.++|++++|+..+.++++.+|.++.+++.+|.++..+|++++|+..|+++++..|++.
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  209 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA  209 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            4566777777777777777777777777777777777777777777777777777777777777776654

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=97.55  E-value=6e-05  Score=68.81  Aligned_cols=44  Identities=16%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             ccccccCCCcC---CcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCLP---NIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~P---N~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      -+.++||+|.+   |+...-.++++.++|+|+|++||||++.|++.|
T Consensus        97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y  143 (151)
T 3db5_A           97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDY  143 (151)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred             ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHH
Confidence            35689999965   998888899999999999999999999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.54  E-value=6.6e-05  Score=82.40  Aligned_cols=71  Identities=18%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.++.++|.+++++|+|++|++.+++|++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++..
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   75 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK   75 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            56677888999999999999999999999999999999999999999999999999999999999998753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.53  E-value=0.00064  Score=65.69  Aligned_cols=70  Identities=10%  Similarity=-0.008  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +.+..|.++|.+++..|+|++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   90 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA   90 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            3444455555555555555555555555555555555555555555555555555555555555554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.52  E-value=5.9e-05  Score=65.13  Aligned_cols=58  Identities=10%  Similarity=0.015  Sum_probs=50.7

Q ss_pred             HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           24 KRDHLVECLRDCNRAVQI---CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        24 ~l~~~~~al~d~~~al~~---~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+|++++|+..+++|+++   +|+++.+|+.+|.++..+|+|++|++.|+++++++|++..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   62 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA   62 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence            478999999999999999   6889999999999999999999999999999999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.50  E-value=0.00042  Score=77.22  Aligned_cols=72  Identities=11%  Similarity=0.003  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.+|.+++.+|.+.|++++|++.++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA  586 (597)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence            478999999999999999999999999999999999999999999999999999999999999999998744

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.49  E-value=0.00062  Score=72.81  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +..+..+..+|.+|++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   94 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT   94 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            346777888888888888888888888888888888888888888888888888888888888888888765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.48  E-value=0.00015  Score=75.56  Aligned_cols=71  Identities=15%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-----------------KAWYRRGKVNVSLENHDDAVHDLTIAK   73 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-----------------ka~~r~a~~~~~l~~~~~A~~~~~~al   73 (665)
                      .+..+.++|..+++.|+|++|+..+.+|++++|+++                 .+|+++|.++..+|+|++|+..|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            678899999999999999999999999999999877                 499999999999999999999999999


Q ss_pred             hcCCChHH
Q 048211           74 NRESSLAG   81 (665)
Q Consensus        74 ~l~p~~~~   81 (665)
                      +++|++..
T Consensus       258 ~~~p~~~~  265 (338)
T 2if4_A          258 TEEEKNPK  265 (338)
T ss_dssp             HHCTTCHH
T ss_pred             HhCCCCHH
Confidence            99998763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.47  E-value=0.00052  Score=72.12  Aligned_cols=71  Identities=17%  Similarity=0.128  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ...++.+++.++..+|++++|+..+.++++++|+++.++..+|.++..+|++++|++.|+++++++|++..
T Consensus       202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  272 (388)
T 1w3b_A          202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD  272 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            35678888889999999999999999999998888888888999999999999999999998888887653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.42  E-value=0.00056  Score=73.80  Aligned_cols=81  Identities=9%  Similarity=0.079  Sum_probs=69.5

Q ss_pred             hHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHHHH
Q 048211          581 LLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQRE  659 (665)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~~~  659 (665)
                      .|.+++. .....+...++.+|+.||.++.-+..||.++...|+.++| .++.||.+|....||++||.+...+-+|-..
T Consensus       313 ~~~eA~~-~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          313 SPSELLE-ICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             CHHHHHH-HHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHH-HHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4555553 4445566778999999999999999999999999999999 9999999999999999999999888888766


Q ss_pred             Hhc
Q 048211          660 ALK  662 (665)
Q Consensus       660 ~~~  662 (665)
                      +..
T Consensus       392 ~~~  394 (433)
T 3qww_A          392 YMG  394 (433)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.42  E-value=0.0008  Score=68.10  Aligned_cols=70  Identities=16%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ...++.++|.+|.++|++++|+..+.++++.+|+++.+|..+|.++..+|++++|+..|++++++.|++.
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  240 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV  240 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            3566777888888888888888888888888888888888888888888888888888888888777754

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=97.41  E-value=0.00011  Score=68.07  Aligned_cols=44  Identities=14%  Similarity=0.233  Sum_probs=38.3

Q ss_pred             ccccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      .+.++||+|.   +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus       101 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y  147 (170)
T 3ep0_A          101 WMTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSH  147 (170)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred             eeeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHH
Confidence            3468999996   8998888899999999999999999999999876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.38  E-value=0.00033  Score=76.82  Aligned_cols=69  Identities=26%  Similarity=0.354  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.++|.+|+++|+|++|++.++++++++|+++++|+++|.++..+|++++|+..|+ ++.++|+..
T Consensus        58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~  126 (537)
T 3fp2_A           58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD  126 (537)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence            467899999999999999999999999999999999999999999999999999999996 888888754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.37  E-value=0.0004  Score=70.53  Aligned_cols=71  Identities=8%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-------KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-------ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.++.|+|.+|.++|+|++|+..++++++++|++.       .+|+++|.++..+|++++|+..|+++++++|+...
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            467899999999999999999999999999988753       27899999999999999999999999999998653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.37  E-value=0.00065  Score=68.56  Aligned_cols=71  Identities=13%  Similarity=-0.023  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC--PS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...++++.+.++.++|++++|+..+++|+..+  |. ++.+++++|.|+..+|+.++|...|++++..+|+ ...
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence            35689999999999999999999999998654  55 6789999999999999999999999999999998 543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.37  E-value=0.0003  Score=71.39  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      ....+.++|..+++.|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++..+|+..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            3456889999999999999999999999999999999999999999999999999999999999999654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.36  E-value=0.00095  Score=67.54  Aligned_cols=75  Identities=16%  Similarity=0.146  Sum_probs=69.0

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ++......+.++|..++..|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus        16 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   90 (327)
T 3cv0_A           16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   90 (327)
T ss_dssp             CGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHH
Confidence            344456678899999999999999999999999999999999999999999999999999999999999998753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.36  E-value=0.00088  Score=73.44  Aligned_cols=83  Identities=10%  Similarity=0.115  Sum_probs=72.0

Q ss_pred             HHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211          579 LGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ  657 (665)
Q Consensus       579 l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~  657 (665)
                      .++|.+++. .....+...++.+|+.||.++.-+..||.++...|+.++| .++.||.+|....||++||.+...+-+|=
T Consensus       322 qg~~~eA~~-l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          322 EGLYHEVVK-LCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTCHHHHHH-HHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            355666664 4555677888999999999999999999999999999999 99999999999999999999999888887


Q ss_pred             HHHhc
Q 048211          658 REALK  662 (665)
Q Consensus       658 ~~~~~  662 (665)
                      ..+..
T Consensus       401 ~~~~~  405 (490)
T 3n71_A          401 LTNWH  405 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.34  E-value=0.00037  Score=70.64  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLE-NHDDAVHDLTIAKNR   75 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l   75 (665)
                      +....+.+|.|.|.+|+++|+|++|+..+++|+++.+..      +.+|+++|.++..+| .+++|++.|++|+.+
T Consensus       191 ~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            456678899999999999999999999999999986332      789999999999999 579999999999876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00084  Score=72.88  Aligned_cols=75  Identities=16%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           12 ATLYVNRASVLQK---RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        12 a~~~~NRa~~~~~---l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      +.++.++|.+++.   +|++++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++.......
T Consensus       412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            4489999999999   99999999999999999999999999999999999999999999999999999987654433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.30  E-value=0.00047  Score=69.97  Aligned_cols=70  Identities=7%  Similarity=-0.017  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKR-DHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l-~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.|.|.+|..+ |++++|+..+++|+++.|..      +.+|.++|.++..+|+|++|++.|++++++.|++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            577899999999995 99999999999999997653      57799999999999999999999999999988764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.27  E-value=0.00039  Score=68.77  Aligned_cols=64  Identities=17%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ...+.++|.+++..|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   66 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK   66 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3457899999999999999999999999999999999999999999999999999999999993

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.26  E-value=0.0005  Score=63.86  Aligned_cols=56  Identities=7%  Similarity=-0.041  Sum_probs=50.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           24 KRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        24 ~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +.+...+|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            33344568999999999999999999999999999999999999999999999874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.24  E-value=0.0008  Score=68.42  Aligned_cols=57  Identities=11%  Similarity=0.086  Sum_probs=47.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           25 RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        25 l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .|++++|+.-++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            367777777777777778888888888999999999999999999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.21  E-value=0.0014  Score=66.25  Aligned_cols=70  Identities=14%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRD-HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.++.++|.++..+| ++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|++++++.|++.
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  159 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH  159 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence            3567888888888888 888888888888888888888888888888888888888888888888888753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.18  E-value=0.001  Score=65.58  Aligned_cols=69  Identities=23%  Similarity=0.183  Sum_probs=63.7

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      +....+.++.+.|.+|..+|++++|+..+.+|+++        +|..+.++..+|.++..+|++++|++.|++++++
T Consensus        80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999998        4667899999999999999999999999999987

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.15  E-value=0.0017  Score=65.77  Aligned_cols=59  Identities=10%  Similarity=-0.039  Sum_probs=49.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.+.+++++|+..+.++++.+|+++.+++.+|.++...|++++|++.|+++++.+|++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            33344444445666777788899999999999999999999999999999999999987

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.09  E-value=0.0019  Score=69.57  Aligned_cols=86  Identities=13%  Similarity=-0.022  Sum_probs=71.0

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI-----CPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNR---   75 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-----~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l---   75 (665)
                      +....+..+.|.|.+|..+|+|++|+.-+.++|++     .|++   +..|+++|.+|..+|+|++|+..|++|+++   
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            45568899999999999999999999999999977     3454   467999999999999999999999999873   


Q ss_pred             --CCChHHHHHHHHHHHHH
Q 048211           76 --ESSLAGKKQIESELKII   92 (665)
Q Consensus        76 --~p~~~~~~~~~~~l~~~   92 (665)
                        .|+.....++...+...
T Consensus       404 ~lG~~Hp~~~~~~~~l~~~  422 (429)
T 3qwp_A          404 THGREHSLIEDLILLLEEC  422 (429)
T ss_dssp             HTCTTSHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHH
Confidence              56666555565555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.08  E-value=0.0017  Score=72.69  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q 048211           11 VATLYVNRASVLQKRDH----------LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE--NHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~----------~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~--~~~~A~~~~~~al~l~p~   78 (665)
                      ...+|.+|+.++.++++          ++++++.+++|++.+|+++.+|+.|+-++..++  ++++|++.+.++++++|.
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~  141 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER  141 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence            45677777777777777          777777777777777777777777777777777  557777777777777777


Q ss_pred             hHH
Q 048211           79 LAG   81 (665)
Q Consensus        79 ~~~   81 (665)
                      |..
T Consensus       142 N~~  144 (567)
T 1dce_A          142 NFH  144 (567)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.08  E-value=0.0012  Score=71.03  Aligned_cols=69  Identities=14%  Similarity=0.037  Sum_probs=61.2

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI---------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~---------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      .+..+.+|.++|.+|..+|+|++|++.+++|+++         +|....+|.++|.++..+|+|++|+..|++++++.
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            3446788999999999999999999999999987         57788899999999999999999999999998763

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.06  E-value=0.0026  Score=68.54  Aligned_cols=72  Identities=11%  Similarity=0.050  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC--------PSYAKAWYRRGKVNVSLE--NHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--------p~~~ka~~r~a~~~~~l~--~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+..|.|+|.+|+.+|+|++|+..+++|+++.        +..+.++..+|.++..+|  +|++|++.|+++++++|++.
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~  172 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP  172 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence            57789999999999999999999999999873        346889999999887765  69999999999999999987


Q ss_pred             HH
Q 048211           81 GK   82 (665)
Q Consensus        81 ~~   82 (665)
                      ..
T Consensus       173 ~~  174 (472)
T 4g1t_A          173 EF  174 (472)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.06  E-value=0.00025  Score=58.66  Aligned_cols=60  Identities=12%  Similarity=0.078  Sum_probs=51.4

Q ss_pred             HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           12 AT-LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        12 a~-~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +. ++.++|.+|+.+|++++|+..++++++++|+++.++++        +.+.+|+..|+++...+|++
T Consensus        34 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           34 KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            45 89999999999999999999999999999999998754        56777788888777776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.05  E-value=0.0015  Score=55.74  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           29 VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        29 ~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ++|+..+.++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   54 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV   54 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH
Confidence            36788999999999999999999999999999999999999999999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.04  E-value=0.0017  Score=72.71  Aligned_cols=72  Identities=14%  Similarity=0.084  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRD--HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-NHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~--~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...+|.+|+.++.+++  +|+++++.++++++.||.+..||..|+.++..+| .+++|++.+.++++.+|+|...
T Consensus       106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (567)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence            5678999999999999  7799999999999999999999999999999999 9999999999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.01  E-value=0.0012  Score=64.98  Aligned_cols=68  Identities=22%  Similarity=0.079  Sum_probs=62.8

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .+..+.++.|+|.+|+.+|++++|+..+++++++        +|..+.++..+|.++..+|++++|+..|++++++
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999        6777899999999999999999999999998876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.01  E-value=0.0016  Score=57.90  Aligned_cols=69  Identities=10%  Similarity=0.038  Sum_probs=46.6

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP--SY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      +....+.++.++|.+|+..|+|++|+..+.+++++.+  .+    ..++..+|.++..+|++++|++.+++++++
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   78 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455667777777777777777777777777776632  11    346667777777777777777777776665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.00  E-value=0.0033  Score=63.49  Aligned_cols=67  Identities=9%  Similarity=0.013  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ---ICPSYA----KAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~---~~p~~~----ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      ..+.+|.|.|.+|..+|+|++|+..+++|++   ..|+..    .+|+.+|.++..+|+|++|++.+++++++.
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3577999999999999999999999999994   456543    789999999999999999999999998874

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=96.98  E-value=0.00047  Score=65.26  Aligned_cols=44  Identities=16%  Similarity=0.086  Sum_probs=39.0

Q ss_pred             ccccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      .+.++||+|.   +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus       131 WmRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~Y  177 (196)
T 3dal_A          131 WMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDF  177 (196)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred             eEEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHHH
Confidence            3568999996   7998888899999999999999999999998653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.97  E-value=0.0016  Score=68.53  Aligned_cols=66  Identities=15%  Similarity=0.171  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ-----IC-PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~-----~~-p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ..+.++.|+|.+|..+|+|++|+..+++|++     .+ |..+.+++.+|.++..+|++++|++.+++++++
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3455566666666666666666666666666     34 555566666666666666666666666666554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.96  E-value=0.001  Score=67.27  Aligned_cols=67  Identities=21%  Similarity=0.245  Sum_probs=58.9

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS------YAKAWYRRGKVNVSLENHDDA-VHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~------~~ka~~r~a~~~~~l~~~~~A-~~~~~~al~l   75 (665)
                      ...+.++.|.|.+|.++|+|++|+..+++|+++.+.      .+.+|+++|.++..+|++++| ...|++|+.+
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            334589999999999999999999999999988532      278999999999999999999 6779999876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.92  E-value=0.0017  Score=68.24  Aligned_cols=66  Identities=9%  Similarity=0.066  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ-----ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~-----~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ..+.++.|.|.+|..+|++++|+..+.+|++     .+|..+.+++.+|.++..+|++++|+..+++++++
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555     34444555555555555555555555555555554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.92  E-value=0.0013  Score=65.88  Aligned_cols=71  Identities=14%  Similarity=0.026  Sum_probs=63.3

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI----------------------------------------------   41 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~----------------------------------------------   41 (665)
                      ....+.++.++|.+|..+|++++|+..++++++.                                              
T Consensus       191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  270 (311)
T 3nf1_A          191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC  270 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence            4557789999999999999999999999999984                                              


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           42 ---CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        42 ---~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                         +|..+.+|+.+|.++..+|++++|++.|++++++.|.
T Consensus       271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence               3566789999999999999999999999999988664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.91  E-value=0.0024  Score=51.23  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE   60 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~   60 (665)
                      .+.++.++|.+|.++|++++|+..++++++++|+++.++..+|.++..+|
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            35678999999999999999999999999999999999999999988765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.89  E-value=0.0022  Score=65.51  Aligned_cols=68  Identities=10%  Similarity=0.042  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.++.|.|.+|.++|+|++|+..+++++++.|..      ..+++.+|.++..+|++++|+..|++++ ++|+.
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            45666777777777777777777777777664322      3456666777777777777777777777 66654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.88  E-value=0.0016  Score=57.93  Aligned_cols=72  Identities=10%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA------KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~------ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ....+.++.+.|.+|..+|++++|+..+++++++.+...      .+++.+|.++..+|++++|++.+++++++.+..
T Consensus        45 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  122 (164)
T 3ro3_A           45 KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  122 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            345678999999999999999999999999999865444      268899999999999999999999999997643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.84  E-value=0.0021  Score=65.54  Aligned_cols=67  Identities=15%  Similarity=0.051  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAK-AWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k-a~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+|.+.+..+.++|++++|...+++|++++|+++. +|...|.++...|++++|+..|+++++.+|..
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence            34555555555555555555555555555555544 55555555555555555555555555555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.82  E-value=0.0018  Score=65.48  Aligned_cols=68  Identities=9%  Similarity=-0.018  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQI-------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES   77 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p   77 (665)
                      ..+.++.|.|.+|..+|+|++|+..+++|++.       .+..+.+|+.+|.++..+|+|++|++.+++++++.+
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999953       123467899999999999999999999999998753

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.78  E-value=0.0059  Score=62.55  Aligned_cols=60  Identities=13%  Similarity=-0.010  Sum_probs=45.3

Q ss_pred             HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChHHH
Q 048211           23 QKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE--NHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        23 ~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~--~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+.+. .++|+.-++++|.+||++..+|+.|+.++..++  ++++|++.+..++..+|.+..+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a  105 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI  105 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence            34444 467888888888888888888888888888888  7888888888888888877544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.75  E-value=0.0035  Score=63.86  Aligned_cols=70  Identities=10%  Similarity=0.059  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQ-------KRDHL-------VECLRDCNRAVQ-ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~-------~l~~~-------~~al~d~~~al~-~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .+.+|.+++..+.       ++|++       ++|+..+++|++ ++|+++.+|...|..+..+|++++|.+.|++++++
T Consensus        49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  128 (308)
T 2ond_A           49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  128 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            4567888888876       45886       999999999999 79999999999999999999999999999999999


Q ss_pred             CCChH
Q 048211           76 ESSLA   80 (665)
Q Consensus        76 ~p~~~   80 (665)
                      +|.+.
T Consensus       129 ~p~~~  133 (308)
T 2ond_A          129 EDIDP  133 (308)
T ss_dssp             SSSCT
T ss_pred             cccCc
Confidence            99865

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.74  E-value=0.003  Score=59.14  Aligned_cols=66  Identities=15%  Similarity=-0.014  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ------ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~------~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ..+.++.++|.++..+|+|++|+..+.++++      ..+..+.++..+|.++..+|++++|++.+++++++
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566677777777777777777777777776      44556666777777777777777777777776665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.73  E-value=0.0014  Score=66.91  Aligned_cols=71  Identities=18%  Similarity=0.114  Sum_probs=59.8

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP--SY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      +....+.+|.|.+.+|.++|+|++|+..+++|+++.+  ++    +.+|.++|.++.. |++++|++.|++++.+.+.
T Consensus        71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~  147 (307)
T 2ifu_A           71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN  147 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Confidence            3456788899999999999999999999999998842  22    5788999999988 9999999999999987653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.71  E-value=0.0054  Score=62.85  Aligned_cols=72  Identities=11%  Similarity=0.049  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLV--ECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN------HDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~--~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~------~~~A~~~~~~al~l~p~~~~~   82 (665)
                      +..++.+|..++.+++.++  ++++.++++++.||.|..||..|+.++..+++      ++++++.+.+++.++|+|...
T Consensus       143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa  222 (306)
T 3dra_A          143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST  222 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred             CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence            3445666666666666666  66666666666666666666666666666665      666666666666666666533

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.70  E-value=0.0029  Score=63.32  Aligned_cols=70  Identities=20%  Similarity=0.073  Sum_probs=63.5

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES   77 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p   77 (665)
                      ....+.++.++|.+|..+|++++|++.+++++++        +|..+.+++.+|.++..+|++++|++.|++++++.+
T Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3557889999999999999999999999999998        677788999999999999999999999999987643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.68  E-value=0.0029  Score=59.18  Aligned_cols=54  Identities=11%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           22 LQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        22 ~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ++..|+|++|.+.+.......+..+.++..+|.++..+|++++|+..|++++.+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   55 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ   55 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            467899999999777777787788999999999999999999999999999885

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.67  E-value=0.011  Score=61.18  Aligned_cols=73  Identities=14%  Similarity=0.055  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChHHHH
Q 048211           11 VATLYVNRASVLQKRDH--LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~--~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      ...++.+|+.++.++++  |++++..++++++.||.|..||..|+-++..+|. ++++++.+.++++.+|+|...-
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW  182 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  182 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            56789999999999994  9999999999999999999999999999999999 6999999999999999987543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.67  E-value=0.0025  Score=67.15  Aligned_cols=68  Identities=9%  Similarity=-0.040  Sum_probs=62.8

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----KAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ....+..+.++|..++..|+|++|+..++++++.+|+++    .+|+.+|.++..+|++++|++.|++++++
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL  115 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            456778888999999999999999999999999999986    58999999999999999999999999886

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}

Probab=96.65  E-value=0.00096  Score=60.70  Aligned_cols=43  Identities=16%  Similarity=0.133  Sum_probs=38.8

Q ss_pred             cccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211          380 GSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       380 ~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      +.++||+|.   +|+...-.++.+.++|+++|++||||++.|++.|
T Consensus        97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~y  142 (152)
T 3ihx_A           97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASY  142 (152)
T ss_dssp             GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred             eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHHH
Confidence            568999998   7998888899999999999999999999998653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.58  E-value=0.0062  Score=67.65  Aligned_cols=65  Identities=14%  Similarity=0.174  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +..++.+|.++|++++|+..++++++.+|+++.+|+.+|.++...|++++|++.|+++++++|++
T Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  406 (597)
T 2xpi_A          342 YPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF  406 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            44555555555555555555555555555555555555555555555555555555555555554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.57  E-value=0.0032  Score=65.70  Aligned_cols=69  Identities=12%  Similarity=-0.023  Sum_probs=61.2

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----KAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ..+..+..+.++|.+++..|+|++|+..++++++.+|+++    .+|+.+|.++..+|++++|+..|++++.+
T Consensus         4 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3445677889999999999999999999999999999884    67899999999999999999999998876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.56  E-value=0.0038  Score=62.78  Aligned_cols=65  Identities=12%  Similarity=-0.005  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ....+..+|..++..|+|++|+..++++++.+|++    +.++..+|.++..+|++++|++.+++++++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34567778999999999999999999999999988    467889999999999999999999998876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.55  E-value=0.0063  Score=63.45  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=66.3

Q ss_pred             CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211            4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP--SY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRES   77 (665)
Q Consensus         4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p   77 (665)
                      .|.+....+.++.++|.+|+.+|+|++|+..+++|+++.+  ++    +.+++.+|.++..+|++++|+..+++++++.+
T Consensus        39 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  118 (406)
T 3sf4_A           39 GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR  118 (406)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4555666789999999999999999999999999999853  34    46899999999999999999999999999876


Q ss_pred             Ch
Q 048211           78 SL   79 (665)
Q Consensus        78 ~~   79 (665)
                      ..
T Consensus       119 ~~  120 (406)
T 3sf4_A          119 EL  120 (406)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.50  E-value=0.0063  Score=62.94  Aligned_cols=73  Identities=12%  Similarity=-0.069  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSL--------------ENHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l--------------~~~~~A~~~~~~al~l   75 (665)
                      +..++.+|..++..++. ++++++.++++++.+|.+.-||..|+.++..+              +.++++++.+.+++.+
T Consensus       143 Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          143 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence            56789999999999999 69999999999999999999999999999998              5689999999999999


Q ss_pred             CCChHHHH
Q 048211           76 ESSLAGKK   83 (665)
Q Consensus        76 ~p~~~~~~   83 (665)
                      +|++...-
T Consensus       223 ~P~d~SaW  230 (331)
T 3dss_A          223 DPNDQSAW  230 (331)
T ss_dssp             STTCHHHH
T ss_pred             CCCCHHHH
Confidence            99998543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.45  E-value=0.0087  Score=62.89  Aligned_cols=36  Identities=8%  Similarity=0.029  Sum_probs=30.4

Q ss_pred             ChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHH
Q 048211          605 HIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLH  640 (665)
Q Consensus       605 ~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~  640 (665)
                      ++..+..+..+|.++...|+.++| .++.+|..+..-
T Consensus       339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            456677888899999999999999 999999988743

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.45  E-value=0.013  Score=60.85  Aligned_cols=75  Identities=12%  Similarity=0.038  Sum_probs=59.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCChHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-NHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      +....++..+-+...+.+..++|++-++++|++||++..+|+.|+.++..+| .++++++.+..++..+|.+..+-
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW  126 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW  126 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence            3355666667777777777788888888888888888888888888888888 48888888888888888876543

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}

Probab=96.42  E-value=0.0021  Score=62.28  Aligned_cols=44  Identities=18%  Similarity=0.091  Sum_probs=39.1

Q ss_pred             ccccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211          379 AGSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       379 ~~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      -+.++||+|.   +|+...-.++.|.++|+|+|++||||++.|++.|
T Consensus       140 WmRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y  186 (237)
T 3ray_A          140 WMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY  186 (237)
T ss_dssp             GGGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred             ceeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHH
Confidence            4579999996   6988888899999999999999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.41  E-value=0.0046  Score=64.86  Aligned_cols=66  Identities=11%  Similarity=0.048  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-------YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-------~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ..+.++.++|.+|..+|+++.|+..+.+|+++.+.       .+.++..+|.++..+|+|++|++.|++++++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  213 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM  213 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            45666777777777777777777777777766321       2346666677777777777777777776665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.39  E-value=0.013  Score=61.18  Aligned_cols=70  Identities=16%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.+|.-.+.+++..|++++|+..+++|+.+||+ .-+|.-+|.++...|++++|++.|.+|+.++|....
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            4455655666777789999999999999999975 678899999999999999999999999999999763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.36  E-value=0.013  Score=51.20  Aligned_cols=84  Identities=10%  Similarity=-0.022  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVE---CLRDCNRAVQIC-P-SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~---al~d~~~al~~~-p-~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      ....+-+|-|.++.+...-..   +|.-++..+.-+ | ..-+.+|-+|.+++++|+|+.|+..++.+++++|+|.....
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            456778899999999887666   666666666654 4 35578999999999999999999999999999999987777


Q ss_pred             HHHHHHHHH
Q 048211           85 IESELKIIL   93 (665)
Q Consensus        85 ~~~~l~~~~   93 (665)
                      ++..++..+
T Consensus       113 Lk~~i~~~i  121 (126)
T 1nzn_A          113 LERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.26  E-value=0.016  Score=57.34  Aligned_cols=64  Identities=11%  Similarity=0.029  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~   76 (665)
                      .+.++.+.|..|+..+++++|+..+.+|++  |+++.+++.+|.++..    .+++++|+..|+++++++
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   72 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence            456788999999999999999999999998  6889999999999999    999999999999999885

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.19  E-value=0.0089  Score=59.20  Aligned_cols=65  Identities=14%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 048211           11 VATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRES   77 (665)
Q Consensus        11 ~a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~p   77 (665)
                      .+.++.|.+.+|..    .+++++|+..+++|++.  +++.+++.+|.++..    .+++++|++.|+++++.+|
T Consensus       145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            35678899999999    99999999999999988  578999999999999    9999999999999998876

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.18  E-value=0.035  Score=57.69  Aligned_cols=75  Identities=13%  Similarity=0.015  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCChHHHHHH
Q 048211           11 VATLYVNRASVLQKRD-HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL-E-NHDDAVHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l-~-~~~~A~~~~~~al~l~p~~~~~~~~   85 (665)
                      ...++.+|+.++..++ .++++++.++.+|..+|.+..+|+.|+.++..+ + +++++++.+.++++.+|.|...-.-
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~  164 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY  164 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5678999999999999 599999999999999999999999999999999 8 9999999999999999999765433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.17  E-value=0.039  Score=48.38  Aligned_cols=85  Identities=12%  Similarity=-0.067  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHL---VECLRDCNRAVQICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~---~~al~d~~~al~~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~   85 (665)
                      +....-+|-|.++.+...-   ..+|.-++..++.+|. .-+-+|-+|.+++++|+|+.|....+.+++++|+|..+..+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            4567788999999998764   5677777778887774 46789999999999999999999999999999999988787


Q ss_pred             HHHHHHHHh
Q 048211           86 ESELKIILD   94 (665)
Q Consensus        86 ~~~l~~~~~   94 (665)
                      ++.++..+.
T Consensus       118 k~~Ie~ki~  126 (134)
T 3o48_A          118 KSMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777766554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.13  E-value=0.0092  Score=59.91  Aligned_cols=67  Identities=9%  Similarity=0.075  Sum_probs=35.9

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ...+.++.+++.+|..+|++++|+..+++++++.+..      ..++..+|.++..+|++++|++.+++++++
T Consensus       180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555553221      235555555555555555555555555544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.90  E-value=0.092  Score=46.59  Aligned_cols=85  Identities=12%  Similarity=-0.067  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHL---VECLRDCNRAVQICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~---~~al~d~~~al~~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~   85 (665)
                      +....-+|-|.++.+...-   .+++.-++..+..+|. .-+-+|-+|.+++++|+|+.|....+.+|+++|+|.....+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            4667788999999998764   4677777777777774 46788999999999999999999999999999999877777


Q ss_pred             HHHHHHHHh
Q 048211           86 ESELKIILD   94 (665)
Q Consensus        86 ~~~l~~~~~   94 (665)
                      +..++..+.
T Consensus       117 k~~Ie~~i~  125 (144)
T 1y8m_A          117 KSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776665543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.89  E-value=0.012  Score=61.62  Aligned_cols=67  Identities=12%  Similarity=0.010  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP---S----YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p---~----~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ...+.++.|.|.+|..+|+++.|+..+.+|+++.+   +    .+.++..+|.++..+|+|++|++.|++++++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~  211 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL  211 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            44666777777777777777777777777776632   1    1445667777777777777777777777665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.89  E-value=0.018  Score=47.79  Aligned_cols=41  Identities=12%  Similarity=0.116  Sum_probs=36.3

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           41 ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        41 ~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   42 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG   42 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            47999999999999999999999999999999999998754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.84  E-value=0.047  Score=48.33  Aligned_cols=62  Identities=11%  Similarity=0.076  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 048211           12 ATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNR   75 (665)
Q Consensus        12 a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l   75 (665)
                      +.++.|.+.+|..    .+++++|+..+++|.+.  +++.+++++|.++..    .+++++|+..|+++.+.
T Consensus        57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            4566777777777    67777777777777776  677777777777777    77777777777777766

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=95.44  E-value=0.0051  Score=53.54  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCCceec
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVT  155 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~  155 (665)
                      ..++|+.++.+|+||||+++|++|++|. |.|-..+
T Consensus         4 ~~~~v~~s~~~G~GvfA~~~I~~G~~I~-ey~g~vi   38 (119)
T 1n3j_A            4 DRVIVKKSPLGGYGVFARKSFEKGELVE-ECLCIVR   38 (119)
T ss_dssp             SSEEEECSCSSCCEEEECCCBCSCEEEC-CCCCEEE
T ss_pred             CCEEEEECCCceeEEEECCcCCCCCEEE-EeeEEEE
Confidence            4678899999999999999999999997 5554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.23  E-value=0.038  Score=60.77  Aligned_cols=70  Identities=10%  Similarity=0.063  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQK-------RDHLV-------ECLRDCNRAVQ-ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~-------l~~~~-------~al~d~~~al~-~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .+.+|.+.+..+.+       +|+++       +|+..+++|++ ++|+++.+|+..|..+..+|++++|.+.|++++++
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            45678888888886       79987       99999999997 89999999999999999999999999999999999


Q ss_pred             CCChH
Q 048211           76 ESSLA   80 (665)
Q Consensus        76 ~p~~~   80 (665)
                      .|.+.
T Consensus       351 ~p~~~  355 (530)
T 2ooe_A          351 EDIDP  355 (530)
T ss_dssp             SSSCH
T ss_pred             cccCc
Confidence            99864

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.23  E-value=0.074  Score=48.50  Aligned_cols=65  Identities=17%  Similarity=0.112  Sum_probs=54.8

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----------------------HHHHHHHHHHHHHcCC
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC---PSY----------------------AKAWYRRGKVNVSLEN   61 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~---p~~----------------------~ka~~r~a~~~~~l~~   61 (665)
                      .+...+.++...|.++|..++|..|..-+.+||++.   +.+                      ....|+.|.|+.++++
T Consensus        58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~  137 (167)
T 3ffl_A           58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ  137 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence            456788899999999999999999999999998762   111                      1577999999999999


Q ss_pred             HHHHHHHHHH
Q 048211           62 HDDAVHDLTI   71 (665)
Q Consensus        62 ~~~A~~~~~~   71 (665)
                      +++|+..++.
T Consensus       138 ~~~Ai~~Le~  147 (167)
T 3ffl_A          138 DKDAIAILDG  147 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999988774

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.14  E-value=0.043  Score=56.89  Aligned_cols=69  Identities=14%  Similarity=0.070  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQIC--------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ..+.++.|++.++..+|+|++|+..+++++++.        |....++..+|.++..+|++++|...+++++.+.+.
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            346678899999999999999999999999874        334567888999999999999999999999988664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.07  E-value=0.047  Score=52.09  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 048211           12 ATLYVNRASVLQKRD----HLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRES   77 (665)
Q Consensus        12 a~~~~NRa~~~~~l~----~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~p   77 (665)
                      +.++.|.+.+|.. +    ++++|+..+.+|++  ++++.+++.+|.++..    .+++++|++.|+++.+..+
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            3445555555555 4    55555555555533  2555555555555554    5555555555555555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.88  E-value=0.063  Score=51.19  Aligned_cols=62  Identities=8%  Similarity=-0.094  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE----NHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~----~~~~A~~~~~~al~l   75 (665)
                      .+.++.+.+..|...+++++|+..+.+|++.  +++.+++++|.++.. +    ++++|++.|+++.+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~   82 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA   82 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence            4678899999999999999999999999886  799999999999998 7    899999999999654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.82  E-value=0.091  Score=52.68  Aligned_cols=68  Identities=7%  Similarity=0.039  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 048211           11 VATLYVNRASVLQKR-----DHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVS-LENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l-----~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~-l~~~~~A~~~~~~al~l~p~   78 (665)
                      ...+|.-.+..|.++     |+.++|.+.+++||+++|+. ...++..|..+.. .|++++|...+++++..+|.
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            567888899999996     99999999999999999975 9999999999988 59999999999999998776

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=94.60  E-value=0.11  Score=52.96  Aligned_cols=65  Identities=12%  Similarity=-0.025  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICP--SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .+...|.++...|++++|++.+.++|+.+|  ++..++.+.++++..+|+.+.|.+.++++.+.+|+
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d  168 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED  168 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            345788999999999999999999999987  88999999999999999999999999999999983

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.54  E-value=0.071  Score=58.50  Aligned_cols=69  Identities=14%  Similarity=0.025  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      ...++.+.+..+.++|++++|...++++++++|.++ .+|...|..+.+.|++++|.+.|++|++..|..
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~  389 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  389 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence            467899999999999999999999999999999986 799999999999999999999999999987764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.45  E-value=0.13  Score=53.24  Aligned_cols=67  Identities=16%  Similarity=0.097  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-----YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-----~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      ...+.++.|+|.+|..+|++++|+..+.+++++.+.     ...++..+|.++...|++++|...+++++.+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999764     3578899999999999999999999999876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.18  E-value=0.13  Score=42.88  Aligned_cols=45  Identities=9%  Similarity=-0.022  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG   53 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a   53 (665)
                      ...+.++.+.|.+|+++|+++.|+.-+++|++++|+++.++.+++
T Consensus        43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            347888999999999999999999999999999999998877766

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=94.00  E-value=0.064  Score=53.89  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQIC-PSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~-p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      +.+++|..+++.++|++|+..++.+++.. |.+ ..+++.+|.++..+|++++|+..|+++..-.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            78999999999999999999999887753 222 4589999999999999999999999998643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.83  E-value=0.15  Score=45.96  Aligned_cols=43  Identities=12%  Similarity=-0.075  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRR   52 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~   52 (665)
                      -...+++|+|.+|+++++|++|++.++++|+.+|++..|..-+
T Consensus        69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4678899999999999999999999999999999998775433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.76  E-value=0.12  Score=62.41  Aligned_cols=63  Identities=11%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ...+|.+.|.++.+.|+|++|++.+.+|     +++.+|++.|.++..+|+|++|++.|..|.+.+++
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            4678999999999999999999999776     88999999999999999999999999999988755

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=93.62  E-value=0.3  Score=52.84  Aligned_cols=65  Identities=11%  Similarity=0.019  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 048211           12 ATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        12 a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~p~   78 (665)
                      +.++.|.+.+|..    .+++++|+..+++|++.  +++.+++++|.++..    .+++++|+..|+++++.+|+
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            5677888888888    88899999999988886  578889999999888    88999999999999888754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.53  E-value=0.12  Score=54.60  Aligned_cols=68  Identities=21%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQI------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      .+.+.++.|.|.+|..+|+|++|+.-+..++..      ++....++...|.++..+|+|+.|...|++++.+.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            356888999999999999999999999998876      23346789999999999999999999999988764

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=93.06  E-value=0.038  Score=50.90  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             eeEeeecCCCCcccccccCCCCCCcccccCCcee
Q 048211          121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAV  154 (665)
Q Consensus       121 ~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~  154 (665)
                      .++|..++.+|+||||+++|++|++|..-.+-+.
T Consensus        31 ~l~v~~~~~kG~Gl~A~~~I~~G~~I~ey~Gevi   64 (166)
T 3f9x_A           31 GMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLI   64 (166)
T ss_dssp             TEEEEEETTTEEEEEESSCBCTTCEEEECCSEEE
T ss_pred             CeEEEECCCceeEEEECCCcCCCCEEEEeeceEc
Confidence            6788899999999999999999999986655443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=92.74  E-value=0.27  Score=50.03  Aligned_cols=69  Identities=7%  Similarity=-0.124  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQI----------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~----------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .++.|   ++.++|+|++|.++++.+++.          +|+++.++.++..+...+|+  +|.+.++++.+++|++..+
T Consensus       215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence            34555   899999999999999988876          58999999999999999998  8899999999999999866


Q ss_pred             HHHH
Q 048211           83 KQIE   86 (665)
Q Consensus        83 ~~~~   86 (665)
                      ..+.
T Consensus       290 ~d~~  293 (310)
T 3mv2_B          290 KHHQ  293 (310)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.07  E-value=0.31  Score=48.87  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCh
Q 048211           27 HLVECLRDCNRAVQICPSY--AKAWYRRGKVNVSL-----ENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        27 ~~~~al~d~~~al~~~p~~--~ka~~r~a~~~~~l-----~~~~~A~~~~~~al~l~p~~   79 (665)
                      ....|....++|+++||++  ..+|.-+|..|..+     |+.+.|.+.|++|++++|+.
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            3578899999999999995  66999999999996     99999999999999999964

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=91.61  E-value=0.068  Score=52.15  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=27.8

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccC
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEE  150 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~  150 (665)
                      ..++|..++.+|+||||+++|++|++|..-.
T Consensus        92 ~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~  122 (232)
T 3ooi_A           92 PEVEIFRTLQRGWGLRTKTDIKKGEFVNEYV  122 (232)
T ss_dssp             CCEEEEECSSSSEEEEESSCBCTTCEEEECC
T ss_pred             ccEEEEEcCCceeEEEECceecCCceeeEee
Confidence            5799999999999999999999999996533

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=91.24  E-value=0.081  Score=49.96  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCCce
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYA  153 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~  153 (665)
                      ..++|..++.+|+||||+++|++|++|..-..-+
T Consensus        52 ~~l~V~~s~~~G~GlfA~~~I~~G~~I~EY~Gev   85 (192)
T 2w5y_A           52 EAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNV   85 (192)
T ss_dssp             HHEEEEECSSSSEEEEESSCBCTTCEEEECCSEE
T ss_pred             CcEEEEEcCCceeEEEECcccCCCCEEEEeeeeE
Confidence            5788999999999999999999999998544433

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=91.18  E-value=0.094  Score=50.80  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             eeEeeecCCCCcccccccCCCCCCcccccCCcee
Q 048211          121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAV  154 (665)
Q Consensus       121 ~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~  154 (665)
                      .+++..++.+|+||||+++|++|+.|....+-+.
T Consensus        75 ~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi  108 (222)
T 3ope_A           75 CLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVV  108 (222)
T ss_dssp             CCEEEECTTSSEEEECSSCBCTTCEEEECCSEEE
T ss_pred             cEEEEEcCCCceEEEECceECCCCEEEEecceec
Confidence            5889999999999999999999999986655543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.13  E-value=0.53  Score=40.93  Aligned_cols=44  Identities=11%  Similarity=-0.080  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG   53 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a   53 (665)
                      ..-.+++..|.+++++|+|..|++.++..|+.+|++..|..-+.
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45677888999999999999999999999999999987754333

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=89.96  E-value=1  Score=48.00  Aligned_cols=62  Identities=13%  Similarity=0.101  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------------------------HHHHHHHcCCHH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYR------------------------------RGKVNVSLENHD   63 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r------------------------------~a~~~~~l~~~~   63 (665)
                      -|.+.|.++.++|+|++|++-+.+|     ++++.|-.                              ....|.+.|+++
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE  224 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHH
Confidence            4778999999999999999999998     24444433                              335667777777


Q ss_pred             HHHHHHHHHHhcCCChH
Q 048211           64 DAVHDLTIAKNRESSLA   80 (665)
Q Consensus        64 ~A~~~~~~al~l~p~~~   80 (665)
                      +|+..+++++.+++...
T Consensus       225 Eai~lLe~aL~le~ah~  241 (449)
T 1b89_A          225 ELITMLEAALGLERAHM  241 (449)
T ss_dssp             HHHHHHHHHTTSTTCCH
T ss_pred             HHHHHHHHHhCCcHHHH
Confidence            77777777777776544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=89.95  E-value=0.71  Score=40.46  Aligned_cols=56  Identities=9%  Similarity=-0.005  Sum_probs=51.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 048211           18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNR   75 (665)
Q Consensus        18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l   75 (665)
                      .+..|...+.++.|++.+.+|.+.  +++.+++++|.++..    .+++++|++.|+++.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            667777778899999999999998  899999999999999    89999999999999887

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.34  E-value=1.2  Score=46.70  Aligned_cols=71  Identities=8%  Similarity=-0.011  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCChH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN-------RESSLA   80 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~-------l~p~~~   80 (665)
                      ....+...++.+++.+|++.+|+..+..++..+|-+-.+|..+-.+++..|+..+|++.|+.+-+       ++|+..
T Consensus       169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            34456667888999999999999999999999999999999999999999999999998887533       466644

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=89.07  E-value=1.3  Score=47.70  Aligned_cols=64  Identities=17%  Similarity=0.082  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 048211           11 VATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        11 ~a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~   76 (665)
                      .+.++.+.+..|+.    .++++.|+..+.+|++.  +++.+++.+|..+..    .+++++|++.|+++.+..
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  109 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG  109 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            56788889999999    89999999999999987  789999999999999    999999999999998764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.01  E-value=0.73  Score=48.28  Aligned_cols=65  Identities=11%  Similarity=0.026  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSY-----------------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-----------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      .....|..+.+.|+|++|++.+..+++.+|..                 .+++..+|.++..+|++++|.+.|..++.+.
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999998753                 3679999999999999999999999988764


Q ss_pred             CC
Q 048211           77 SS   78 (665)
Q Consensus        77 p~   78 (665)
                      +.
T Consensus        86 ~~   87 (434)
T 4b4t_Q           86 MQ   87 (434)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=88.37  E-value=0.22  Score=53.25  Aligned_cols=52  Identities=13%  Similarity=-0.033  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211           13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA   72 (665)
Q Consensus        13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a   72 (665)
                      ..+.+.+.+++..|+|++|..-+..+        ..|.++|.|+.++|+|++|++.|+++
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            38899999999999999999999976        47889999999999999999999998

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=88.12  E-value=0.19  Score=50.64  Aligned_cols=34  Identities=35%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCCce
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYA  153 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~  153 (665)
                      ..++|..++.+|+||+|+++|++|+.|..-..-+
T Consensus       147 ~~l~v~~t~~kG~Gv~A~~~I~~G~~I~eY~Gev  180 (287)
T 3hna_A          147 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGEL  180 (287)
T ss_dssp             SCEEEEECSSSSEEEEESSCBCTTCEEEEECEEE
T ss_pred             ccEEEEEcCCCceEEEeCcccCCCCEEEEeeeEE
Confidence            5889999999999999999999999997654443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=87.97  E-value=1.3  Score=50.69  Aligned_cols=55  Identities=15%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211           19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK   73 (665)
Q Consensus        19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al   73 (665)
                      |.-+...|+|+-|+.-+.+|..+-|+..+.|+++++||..+|+|+.|+-.++.+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            3334567999999999999999999999999999999999999999998877653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=87.80  E-value=1.1  Score=47.92  Aligned_cols=60  Identities=22%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 048211           14 LYVNRASVLQKRD---HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL----ENHDDAVHDLTIAK   73 (665)
Q Consensus        14 ~~~NRa~~~~~l~---~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l----~~~~~A~~~~~~al   73 (665)
                      ++.+.+.+|.+.|   ++++|+..+.+|.+.+|..+.+++.+|.++...    +++++|+..|+++.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA  244 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence            6677777777777   778888888888887777777777788777655    67778888887776

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.72  E-value=1.2  Score=39.38  Aligned_cols=40  Identities=5%  Similarity=-0.220  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWY   50 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~   50 (665)
                      .-.+++..|.+++++|+|..|.+.++..|+.+|+|..|..
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4456788999999999999999999999999999977643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.30  E-value=1.4  Score=35.95  Aligned_cols=45  Identities=13%  Similarity=-0.031  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           42 CPSYAKAWYRRGKVNVSLEN---HDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        42 ~p~~~ka~~r~a~~~~~l~~---~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      +|+++..++.+|.+++..++   .++|...++++++++|++....-+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~l   49 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLI   49 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            68999999999999987776   7999999999999999997544333

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.88  E-value=1.4  Score=53.36  Aligned_cols=50  Identities=14%  Similarity=-0.025  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA   72 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a   72 (665)
                      +.+.|..++..|+|++|+.-+.+|        ..|.++|.++.++|+|++|++.+++|
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            445566666666666666655554        34555566666666666665555554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=86.86  E-value=1.7  Score=37.94  Aligned_cols=43  Identities=5%  Similarity=-0.218  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRR   52 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~   52 (665)
                      ..-.+++-.|.+++++|+|+.|.+.++..|+.+|++..|..-+
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            3556778899999999999999999999999999998775433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.55  E-value=2.7  Score=41.34  Aligned_cols=64  Identities=11%  Similarity=-0.052  Sum_probs=58.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211           20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK   83 (665)
Q Consensus        20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~   83 (665)
                      ..+++-+..++|++.+...++-+|.+++...-.-+.+.-.|+|+.|.+-++.+.+++|+.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            4578889999999999999999999999999999999999999999999999999999976443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=86.07  E-value=3  Score=43.22  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------------------------
Q 048211           11 VATLYVNRASVLQKRD---HLVECLRDCNRAVQICPSYAKAWYRRGKV--------------------------------   55 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~---~~~~al~d~~~al~~~p~~~ka~~r~a~~--------------------------------   55 (665)
                      -|.-++=||..++..+   .+.+|+.-+++|+++||+|+.+|..++.+                                
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            3444445666666654   36888999999999999987776643333                                


Q ss_pred             ------------HHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           56 ------------NVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        56 ------------~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                                  +...|++++|+..+++|+.++|+.
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~  310 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW  310 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Confidence                        333578888888888888887764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=85.00  E-value=1.2  Score=47.55  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhcC
Q 048211           11 VATLYVNRASVLQKR----DHLVECLRDCNRAVQICPSYAKAWYRRGKV-N--VSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l----~~~~~al~d~~~al~~~p~~~ka~~r~a~~-~--~~l~~~~~A~~~~~~al~l~   76 (665)
                      .+..+.|.+.+|...    +++++|+..+.+|.   |+++.+++++|.+ +  ...+++++|++.|+++.+..
T Consensus       212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence            345568888888776    79999999999998   8999999999999 4  57899999999999998764

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=84.70  E-value=0.36  Score=48.61  Aligned_cols=29  Identities=31%  Similarity=0.480  Sum_probs=26.8

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccc
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHS  148 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~  148 (665)
                      ..++|..++.+|+||+|+++|++|+.|..
T Consensus       126 ~~l~V~~s~~~G~Gl~A~~~I~~G~~I~E  154 (290)
T 3bo5_A          126 FHFQVFKTHKKGWGLRTLEFIPKGRFVCE  154 (290)
T ss_dssp             SCEEEEECSSSSEEEEESSCBCTTCEEEE
T ss_pred             ccEEEEEcCCCcceEeECCccCCCCEEEE
Confidence            57899999999999999999999999974

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=83.67  E-value=0.37  Score=52.56  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=26.3

Q ss_pred             eeEeeecCCCCcccccccCCCCCCcccccC
Q 048211          121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEE  150 (665)
Q Consensus       121 ~~~v~~s~~~GR~lvAtrdi~~GevIl~e~  150 (665)
                      .|++...+..||||||++||++||+|+.-+
T Consensus        94 ~v~i~~~~~~GrGl~A~~dI~~ge~ll~IP  123 (497)
T 3smt_A           94 GFEMVNFKEEGFGLRATRDIKAEELFLWVP  123 (497)
T ss_dssp             TEEEEEETTTEEEEEESSCBCTTCEEEEEE
T ss_pred             ceEEEEcCCCccEEEEcccCCCCCEEEEcC
Confidence            678888899999999999999999987543

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=83.20  E-value=0.47  Score=48.12  Aligned_cols=30  Identities=33%  Similarity=0.526  Sum_probs=27.2

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCccccc
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSE  149 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e  149 (665)
                      ..++|..++.+|+||+|+++|++|+.|..-
T Consensus       133 ~~l~v~~t~~kG~Gv~A~~~I~~G~~I~EY  162 (302)
T 1ml9_A          133 VPLQIFRTKDRGWGVKCPVNIKRGQFVDRY  162 (302)
T ss_dssp             SCEEEEECSSSCEEEECSSCBCTTCEEEEC
T ss_pred             cceEEEEcCCCceEEEECCeeCCCCEEEEE
Confidence            578899999999999999999999998753

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=82.74  E-value=0.49  Score=47.89  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=27.6

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccC
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEE  150 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~  150 (665)
                      ..++|..++.+|+||+|+++|++|+.|..-.
T Consensus       137 ~~l~v~~t~~~G~Gv~A~~~I~kG~~I~EY~  167 (299)
T 1mvh_A          137 LPLEIFKTKEKGWGVRSLRFAPAGTFITCYL  167 (299)
T ss_dssp             SCEEEEECSSSSEEEEESSCBCTTCEEEECC
T ss_pred             ccEEEEEcCCCcceEeeCceeCCCCEEEEee
Confidence            5788999999999999999999999997533

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=81.60  E-value=0.48  Score=51.00  Aligned_cols=30  Identities=13%  Similarity=0.265  Sum_probs=23.6

Q ss_pred             eeeEeeec-CCCCcccccccCCCCCCccccc
Q 048211          120 VQLQCVTT-PDKGRGITSQYDIPEGSLVHSE  149 (665)
Q Consensus       120 ~~~~v~~s-~~~GR~lvAtrdi~~GevIl~e  149 (665)
                      .+|++... +..||||||++||++||+|+.-
T Consensus        38 ~~v~i~~~~~~~G~Gv~A~~dI~~ge~ll~I   68 (449)
T 3qxy_A           38 PKVAVSRQGTVAGYGMVARESVQAGELLFVV   68 (449)
T ss_dssp             TTEEEESSSCSSSSEEEESSCBCTTCEEEEE
T ss_pred             CceEEEecCCCceEEEEECCCCCCCCEEEEe
Confidence            35566553 4789999999999999988744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	665
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	9e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT- 70
           A  Y NRA    K     + L DC RA+++     KA +  G+  + +E++D+A+ +L  
Sbjct: 38  AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97

Query: 71  -IAKNRESSLAGKKQIESELKI 91
             +  +E  L     I S L+I
Sbjct: 98  AYSLAKEQRLNFGDDIPSALRI 119

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 9e-04
 Identities = 6/96 (6%), Positives = 16/96 (16%), Gaps = 7/96 (7%)

Query: 1   MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60
                  R                    +E  ++                   +    L 
Sbjct: 231 YHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 290

Query: 61  NHDDAVHDLTIA-------KNRESSLAGKKQIESEL 89
              + +   +               L  K  +E+ +
Sbjct: 291 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 326

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 12  ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN 61
           A  + N ASVLQ++  L E L     A++I P++A A+   G     +++
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 15  YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72
             N A++ +++ ++ E +R   +A+++ P +A A      V        +A+     A
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	665
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.33
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.23
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.93
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.92
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.82
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.78
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.73
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	98.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.59
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.48
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	98.47
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.34
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	98.33
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.32
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	98.27
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.2
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	98.19
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	98.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.04
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.96
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.96
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.94
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.9
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.81
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.74
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.67
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.6
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.25
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.94
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.73
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.61
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.08
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.08
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.02
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.41
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	95.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.34
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.29
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	92.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	90.63
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	90.29
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	89.32
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	88.06
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	87.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	86.37
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	86.35

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.71  E-value=6e-19  Score=176.83  Aligned_cols=87  Identities=14%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             ccHHHHHHHHhhhhcceeeccccccCCCCCCCCCCCCCccccccceeEEEeccccccccCCCcCCcEEEEe---------
Q 048211          326 ASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFL---------  396 (665)
Q Consensus       326 ~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~~f~---------  396 (665)
                      .+.......++.+..++|.+.                       ...|.+|||.++|+||||.||+.+.+.         
T Consensus       158 ~~~~~~~~a~~~v~sr~~~~~-----------------------~~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~  214 (261)
T d2h2ja2         158 VTLDDFFWAFGILRSRAFSRL-----------------------RNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLF  214 (261)
T ss_dssp             CCHHHHHHHHHHHHHHSBCCC--------------------------CCBCCTTGGGCEECSSCCSCCCCCC--------
T ss_pred             cCHHHHHHHHHHhhccccccc-----------------------ccccccchhhhHHhhcCCCCCcccccccccCccccc
Confidence            344555566667777777653                       235678999999999999999988764         


Q ss_pred             --CCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeee
Q 048211          397 --SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRC  442 (665)
Q Consensus       397 --g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C  442 (665)
                        ++.++|||.|||++|||||||||+.   .+..    .|...|+|.+
T Consensus       215 ~~~~~~~l~A~r~I~~GEEI~isYG~~---~~n~----~ll~~yGFv~  255 (261)
T d2h2ja2         215 SWDYLFSLKSPLSVKAGEQVYIQYDLN---KSNA----ELALDYGFIE  255 (261)
T ss_dssp             ---CEEEEECSSCCCTTSBCEECSCSS---CCHH----HHHHHSSCCC
T ss_pred             CCCcEEEEEECCCCCCCCEEEEecCCC---CCHH----HHHHhCCCCC
Confidence              2579999999999999999999964   3432    3666899985

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.33  E-value=3.6e-12  Score=115.97  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL   89 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l   89 (665)
                      +...+|.|||.+|+++|+|++|++++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++..+......+
T Consensus        65 ~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          65 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999998665554444


Q ss_pred             HHHH
Q 048211           90 KIIL   93 (665)
Q Consensus        90 ~~~~   93 (665)
                      ...+
T Consensus       145 ~~kl  148 (153)
T d2fbna1         145 VNKL  148 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.23  E-value=3.1e-11  Score=111.41  Aligned_cols=84  Identities=14%  Similarity=0.218  Sum_probs=75.4

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE   88 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~   88 (665)
                      .+.+.+|.|||.||+++|+|.+|+.++++||+++|+++++|+++|.++..+|+|++|+++|+++++++|++.........
T Consensus        61 ~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          61 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999865444444


Q ss_pred             HHHH
Q 048211           89 LKII   92 (665)
Q Consensus        89 l~~~   92 (665)
                      +...
T Consensus       141 ~~~~  144 (168)
T d1kt1a1         141 CQKK  144 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=2.5e-11  Score=112.07  Aligned_cols=84  Identities=23%  Similarity=0.220  Sum_probs=75.6

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE   88 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~   88 (665)
                      +..+.+|.|||.+|+++|+|++|+.++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++..+......
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999865444444


Q ss_pred             HHHH
Q 048211           89 LKII   92 (665)
Q Consensus        89 l~~~   92 (665)
                      +...
T Consensus       154 ~~~~  157 (169)
T d1ihga1         154 VKQK  157 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.8e-11  Score=108.87  Aligned_cols=83  Identities=17%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE   88 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~   88 (665)
                      .+...+|.|+|.+|+++|+|++|+.++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++.........
T Consensus        59 ~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          59 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999998865544444


Q ss_pred             HHH
Q 048211           89 LKI   91 (665)
Q Consensus        89 l~~   91 (665)
                      +..
T Consensus       139 ~~~  141 (170)
T d1p5qa1         139 CQQ  141 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.3e-10  Score=98.62  Aligned_cols=78  Identities=18%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE   88 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~   88 (665)
                      .+.+|.|+|.+|+++|+|++|+.++.+|++++|+++++|+++|.++..+|+|++|+..|+++++++|++.........
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          36 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999999855444333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3e-09  Score=96.59  Aligned_cols=79  Identities=24%  Similarity=0.303  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL   89 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l   89 (665)
                      .+.+|.|+|.+|+.+|++++|+.++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++........++
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          43 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            5778999999999999999999999999999999999999999999999999999999999999999987544333333

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=98.92  E-value=2.4e-10  Score=98.91  Aligned_cols=45  Identities=29%  Similarity=0.412  Sum_probs=39.9

Q ss_pred             cccccccCCCcCCcEEEEe--CCEEEEEEeecCCCCCceeeecCCCC
Q 048211          378 TAGSLFNHSCLPNIHAYFL--SRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       378 p~~Sl~NHSC~PN~~~~f~--g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      +.++++||||.||+...+.  +..+.++|+|||++|||||++|++.+
T Consensus        63 ~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dYg~~y  109 (119)
T d2g46a1          63 GFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDY  109 (119)
T ss_dssp             STTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCCCSSS
T ss_pred             CCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEecChhH
Confidence            4578999999999988776  35799999999999999999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.9e-09  Score=101.09  Aligned_cols=67  Identities=15%  Similarity=0.104  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.+.|..|++.|+|++|+..+.+||+++|+++.+|+.+|.||..+|+|++|+.+|++|++++|++.
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence            3556777777777777777777777777777777777777777777777777777777777777764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9.9e-09  Score=96.34  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.+++|+|.+|+.+|+|++|++++++||++||+++.+|+++|.++..+|+|++|+.+|++++...+.+
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            456799999999999999999999999999999999999999999999999999999999999875544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.9e-08  Score=96.57  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=71.2

Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211            7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus         7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..+..+.+|.+||.+|.++|+|++|+.++++||+++|+++.+|+++|.++..+|++++|++.|+++++++|++..
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  106 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  106 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhh
Confidence            445688999999999999999999999999999999999999999999999999999999999999999998763

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=98.67  E-value=4.9e-09  Score=104.61  Aligned_cols=64  Identities=22%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             ccccccCCCcCCcEEEEe--C------CEEEEEEeecCCCCCceeeecCCCCCCCCH-HHHHHHhhcCCCeeeec
Q 048211          379 AGSLFNHSCLPNIHAYFL--S------RTLMIRTTEFVPSGYPLELSYGPQVGQWDC-KDRLKFLEDEYSFRCQC  444 (665)
Q Consensus       379 ~~Sl~NHSC~PN~~~~f~--g------~~~~vrA~r~I~~GeeI~isY~~~~~~~~~-~~Rr~~L~~~y~F~C~C  444 (665)
                      .+.++||||.||+.+...  +      .+|.+.|+|||++|||||+.|++.+  ++. .+.....+....|.|.|
T Consensus       212 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~--~~~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         212 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGL--TGLESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-------------------------
T ss_pred             hhheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCC--CCchhhcchhhcccCCceeeC
Confidence            367899999999976532  1      3799999999999999999999763  332 23344444456788887

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.1e-08  Score=86.76  Aligned_cols=71  Identities=18%  Similarity=0.105  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .|..+..+|..|++.|+|++|+..+.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~   79 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK   79 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH
Confidence            67778899999999999999999999999999999999999999999999999999999999999999863

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.2e-08  Score=84.31  Aligned_cols=67  Identities=10%  Similarity=0.020  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      |..+-|.+..|++.|+|++|+..+++||+++|+++.+|+.+|.++..+|+|++|+++++++++++|+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~   70 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc
Confidence            4445566666666666666666666666666666666666666666666666666666666665554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.6e-08  Score=78.44  Aligned_cols=80  Identities=6%  Similarity=-0.162  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      +.-.++.|.++++.|+|+.|+..+++|+++.|..       +.+|..+|.++.++|+|++|++.|+++++++|++.....
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4446799999999999999999999999986443       688999999999999999999999999999999875433


Q ss_pred             HHHHHHH
Q 048211           85 IESELKI   91 (665)
Q Consensus        85 ~~~~l~~   91 (665)
                      -...+++
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.59  E-value=1.6e-07  Score=79.57  Aligned_cols=71  Identities=17%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...+.++|.++++.|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++...
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a   86 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV   86 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccc
Confidence            34467899999999999999999999999999999999999999999999999999999999999998643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.9e-07  Score=79.71  Aligned_cols=67  Identities=9%  Similarity=0.087  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      +.++|..+++.|+|++|+..++++|+.+|.++.+|+.+|.++..+|+|++|+.+++++++++|++..
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhh
Confidence            5689999999999999999999999999999999999999999999999999999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.5e-07  Score=87.68  Aligned_cols=69  Identities=29%  Similarity=0.404  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      .+.+|.|+|.+|+++|+|++|+.++++|++++|+++++|+++|.++..+|+|++|+..|+++++++|++
T Consensus        37 ~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            578999999999999999999999999999999999999999999999999999999999999987754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.4e-08  Score=83.81  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      .+.++.|||.+|+++|+|++|+.++++|++++|+++.+|..+|.++..+|+...+..+|+.|++..
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~  102 (128)
T d1elra_          37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY  102 (128)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999998864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9.3e-08  Score=82.49  Aligned_cols=83  Identities=10%  Similarity=0.002  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211           11 VATLYVNRASVLQKRD---HLVECLRDCNRAVQICPSY--AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI   85 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~---~~~~al~d~~~al~~~p~~--~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~   85 (665)
                      .+.+++|.|.++++.+   ++++|+.-++++++.+|+.  +.+|+.+|.++..+|+|++|++.|+++++++|++.....+
T Consensus        32 ~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l  111 (122)
T d1nzna_          32 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  111 (122)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence            5578999999998754   5667999999999998765  5699999999999999999999999999999999877677


Q ss_pred             HHHHHHHH
Q 048211           86 ESELKIIL   93 (665)
Q Consensus        86 ~~~l~~~~   93 (665)
                      +..+...+
T Consensus       112 ~~~I~~~~  119 (122)
T d1nzna_         112 ERLIDKAM  119 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.48  E-value=9.3e-08  Score=86.17  Aligned_cols=69  Identities=16%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICP-----------SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p-----------~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      ..+.+|.|+|.+|.++|+|++|+.+++++|++.|           .+.++|+++|.++..+|++++|++.|++++++.|.
T Consensus        53 ~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          53 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3688999999999999999999999999998743           23578999999999999999999999999998654

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.2e-08  Score=90.75  Aligned_cols=43  Identities=30%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             cccccCCCcCCcEEEE--e---CCEEEEEEeecCCCCCceeeecCCCC
Q 048211          380 GSLFNHSCLPNIHAYF--L---SRTLMIRTTEFVPSGYPLELSYGPQV  422 (665)
Q Consensus       380 ~Sl~NHSC~PN~~~~f--~---g~~~~vrA~r~I~~GeeI~isY~~~~  422 (665)
                      +.++||||.||+....  .   +..+.++|+|+|++|||||++|+..+
T Consensus        99 ~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dYG~~~  146 (171)
T d2f69a2          99 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  146 (171)
T ss_dssp             GGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCS
T ss_pred             ceeeEccCCCCceEEEEEecCCCeEEEEEEccCcCCCCEEEEEeCCCC
Confidence            5589999999996532  2   24688999999999999999999543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.36  E-value=4.3e-07  Score=80.67  Aligned_cols=74  Identities=18%  Similarity=0.115  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHH
Q 048211           11 VATLYVNRASVLQKR----------DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-----------HDDAVHDL   69 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l----------~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-----------~~~A~~~~   69 (665)
                      .+.++.|+|.++..+          +.+++|+..+++|+++||+++.+|+++|.++..+|+           |++|++.|
T Consensus        30 ~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~  109 (145)
T d1zu2a1          30 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF  109 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence            567899999999865          456899999999999999999999999999988764           78999999


Q ss_pred             HHHHhcCCChHHHHH
Q 048211           70 TIAKNRESSLAGKKQ   84 (665)
Q Consensus        70 ~~al~l~p~~~~~~~   84 (665)
                      +++++++|++.....
T Consensus       110 ~kal~l~P~~~~~~~  124 (145)
T d1zu2a1         110 QQAVDEQPDNTHYLK  124 (145)
T ss_dssp             HHHHHHCTTCHHHHH
T ss_pred             hcccccCCCHHHHHH
Confidence            999999999975433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.34  E-value=5.6e-07  Score=76.05  Aligned_cols=63  Identities=10%  Similarity=-0.035  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK   73 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al   73 (665)
                      .+.+|.++|.+|.+++++++|+..+.+|++++|+++.+|+.+|.++..+|++++|++.+++++
T Consensus        49 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          49 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            578899999999999999999999999999999999999999999999999999999999875

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.33  E-value=1.8e-07  Score=91.87  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=35.9

Q ss_pred             cccccCCCcCCcEEEE--eC------CEEEEEEeecCCCCCceeeecCCCCC
Q 048211          380 GSLFNHSCLPNIHAYF--LS------RTLMIRTTEFVPSGYPLELSYGPQVG  423 (665)
Q Consensus       380 ~Sl~NHSC~PN~~~~f--~g------~~~~vrA~r~I~~GeeI~isY~~~~~  423 (665)
                      +-++||||.||+.+..  .+      .+|.+.|+|+|++|||||+.|++..+
T Consensus       213 aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d  264 (269)
T d1mvha_         213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD  264 (269)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred             eEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCCcC
Confidence            4588999999996643  22      36899999999999999999997543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.3e-06  Score=84.27  Aligned_cols=71  Identities=13%  Similarity=0.103  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+.+|.|+|.+|.++|++++|+..+++|++++|+++.+|+++|.++..+|++++|++.|+++++++|++..
T Consensus        70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  140 (259)
T d1xnfa_          70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF  140 (259)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999998753

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.9e-07  Score=61.92  Aligned_cols=37  Identities=27%  Similarity=0.542  Sum_probs=31.4

Q ss_pred             ccccccccccCCcCCCCCCCccccchHHHHhhhccccccCC
Q 048211          165 CHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCP  205 (665)
Q Consensus       165 C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC  205 (665)
                      |.+|.++   .+.+|++|..++|||.+||+.+|.. |+.+|
T Consensus         2 C~~C~~~---~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C   38 (38)
T d2jw6a1           2 CVNCGRE---AMSECTGCHKVNYCSTFCQRKDWKD-HQHIC   38 (38)
T ss_dssp             CSSSSSS---CSEECTTTCSSEESSHHHHHHHTTT-GGGTT
T ss_pred             ccccCcc---ccccCCCCCCEeeCCHHHHHHHHHH-HhhhC
Confidence            7888874   4779999999999999999999974 76655

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.2e-06  Score=87.62  Aligned_cols=69  Identities=10%  Similarity=0.124  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +.++.++|.++..+|++++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++.
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            445555666666666666666666666666666666666666666666666666666666666666543

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.9e-07  Score=64.21  Aligned_cols=42  Identities=17%  Similarity=0.471  Sum_probs=35.3

Q ss_pred             cccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCC
Q 048211          160 CRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCP  205 (665)
Q Consensus       160 ~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC  205 (665)
                      .....|..|.++   ...+|++|..++|||++||..+|.. |+.+|
T Consensus         6 ~~~~~C~~C~~~---~~~~C~~C~~~~YCs~~CQ~~dW~~-Hk~~C   47 (47)
T d2dj8a1           6 DSSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWEK-HHHIC   47 (47)
T ss_dssp             CCSCCCSSSCSC---CCEECTTTSCCEESSHHHHHHTHHH-HTTTS
T ss_pred             cCCCcCCCCCcc---ccccCCCCCCeeeCCHHHHHHHHHH-HhhhC
Confidence            356789999875   3679999999999999999999974 77665

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.8e-07  Score=64.04  Aligned_cols=40  Identities=25%  Similarity=0.652  Sum_probs=33.5

Q ss_pred             cccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCC
Q 048211          162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCP  205 (665)
Q Consensus       162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC  205 (665)
                      .+.|.+|.++   ...+|++|+.++|||++||..+|.. |+.+|
T Consensus         8 ~~~C~~Cg~~---~~~~Cs~C~~~~YCs~~CQ~~dW~~-Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSAE---ASKRCSRCQNEWYCCRECQVKHWEK-HGKTC   47 (47)
T ss_dssp             CCCCSSSCCC---CCEECTTTSCSEESSHHHHHHTHHH-HTTTC
T ss_pred             CCcCcCCCCh---hhccCCCCCCEeeCCHHHHHHHHHH-HhhhC
Confidence            3469999885   3679999999999999999999974 66555

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.8e-06  Score=85.55  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChHHH
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~~   82 (665)
                      .+..+.++.+++.++.+.+.+++|+..+++||++||++..+|+.||.++..+|. +++|++.++++++++|++...
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a  114 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  114 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH
Confidence            345778888888888888888999999999999999999999999988888874 888898999998888887644

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.1e-05  Score=80.88  Aligned_cols=73  Identities=14%  Similarity=0.122  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           10 LVATLYVNRASVLQKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ....+|.||+.++..++. +++|+..++++++.+|+++.+|+.+|.++..+|++++|++.++++++++|++...
T Consensus        75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a  148 (315)
T d2h6fa1          75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA  148 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH
T ss_pred             CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHH
Confidence            467899999999999985 9999999999999999999999999999999999999999999999999998744

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.1e-06  Score=81.87  Aligned_cols=69  Identities=19%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~   80 (665)
                      +..+.+++.++.++|++++|+..+++|++++|+++.+|+++|.++..+|++++|++.|+++++++|++.
T Consensus       305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            345556666666666666666666666666666666666666666666666666666666666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=2.2e-05  Score=71.87  Aligned_cols=71  Identities=7%  Similarity=-0.036  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCChH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA-------KNRESSLA   80 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a-------l~l~p~~~   80 (665)
                      ....++.+++.++.++|+|++|+.+++++++++|.+..+|.+++.++..+|++.+|++.|+++       +-++|+.+
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            356789999999999999999999999999999999999999999999999999999999987       44677754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.9e-05  Score=73.16  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      -+.-+.|+|..++..|+|+.|++.+.+   +.|.++++|+++|.++..+|+|++|+++|++|++++|++...
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a   72 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA   72 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhh
Confidence            345677999999999999999999985   466789999999999999999999999999999999998643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.7e-05  Score=78.94  Aligned_cols=67  Identities=16%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      ..++|..+++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|.++++++|++..
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   88 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT   88 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999863

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=4.1e-05  Score=69.25  Aligned_cols=71  Identities=14%  Similarity=0.114  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---------------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .+..+.++|..+++.|+|++|+..+.+||++.|..               ..+|.++|.|++++|+|++|+.++++++++
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            67778899999999999999999999999997643               367889999999999999999999999999


Q ss_pred             CCChHH
Q 048211           76 ESSLAG   81 (665)
Q Consensus        76 ~p~~~~   81 (665)
                      +|++..
T Consensus        92 ~p~~~~   97 (170)
T d1p5qa1          92 DSNNEK   97 (170)
T ss_dssp             CTTCHH
T ss_pred             cccchh
Confidence            999864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=9.3e-06  Score=71.71  Aligned_cols=61  Identities=15%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCChHH
Q 048211           21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL----------ENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l----------~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .|-+++.|++|+..+++|++++|+++.+|+++|.++..+          +.+++|+..|+++++++|++..
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~   76 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE   76 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH
Confidence            466788899999999999999999999999999999855          5558999999999999999864

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=7.7e-05  Score=74.71  Aligned_cols=47  Identities=6%  Similarity=-0.072  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHHHHHh
Q 048211          607 VIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQREAL  661 (665)
Q Consensus       607 ~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~~~~~  661 (665)
                      .....++.+|.++...|+.++| ..+.+|.++     -|+++..   ...|=..+.
T Consensus       337 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a---~~~lg~~~~  384 (388)
T d1w3ba_         337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFADA---YSNMGNTLK  384 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-----CTTCHHH---HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHH
Confidence            3356788999999999999999 999998765     4666544   344444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.67  E-value=3.1e-05  Score=68.96  Aligned_cols=67  Identities=21%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             HHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211           11 VATLYVN--RASVLQKRDHLVECLRDCNRAVQICPSY------------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        11 ~a~~~~N--Ra~~~~~l~~~~~al~d~~~al~~~p~~------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      .+.+|.+  ++..+++.|+|++|+..+++||+++|++            +.+|.++|.++..+|+|++|++++++++++.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            3445554  4788899999999999999999998764            3679999999999999999999999999864


Q ss_pred             C
Q 048211           77 S   77 (665)
Q Consensus        77 p   77 (665)
                      |
T Consensus        86 ~   86 (156)
T d2hr2a1          86 N   86 (156)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.64  E-value=0.00018  Score=64.70  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---------------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR   75 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l   75 (665)
                      .+..+..+|..+++.|+|++|+..+.+||..-|..               ...|.++|.|+..+|+|++|+.++++++++
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            56778899999999999999999999999764331               355788999999999999999999999999


Q ss_pred             CCChHH
Q 048211           76 ESSLAG   81 (665)
Q Consensus        76 ~p~~~~   81 (665)
                      +|++..
T Consensus        94 ~p~~~~   99 (168)
T d1kt1a1          94 DSANEK   99 (168)
T ss_dssp             CTTCHH
T ss_pred             ccchHH
Confidence            999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.63  E-value=9.2e-05  Score=66.62  Aligned_cols=71  Identities=11%  Similarity=0.123  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQI----------------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~----------------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      .+..+.+++..+++.|+|+.|+..+.+||++                +|..+.+|..+|.++..+|+|++|+.+++++++
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            4556789999999999999999999999865                355677899999999999999999999999999


Q ss_pred             cCCChHH
Q 048211           75 RESSLAG   81 (665)
Q Consensus        75 l~p~~~~   81 (665)
                      ++|++..
T Consensus       106 ~~p~~~~  112 (169)
T d1ihga1         106 IDPSNTK  112 (169)
T ss_dssp             TCTTCHH
T ss_pred             hhhhhhh
Confidence            9999864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.60  E-value=0.00025  Score=62.64  Aligned_cols=71  Identities=7%  Similarity=-0.003  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----------------AKAWYRRGKVNVSLENHDDAVHDLTIAKN   74 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~   74 (665)
                      .+.-+..+|..+++.|+|.+|+..+.+||++-+..                ...|.++|.|++.+|+|++|+++++++++
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            55667889999999999999999999999875432                24678999999999999999999999999


Q ss_pred             cCCChHH
Q 048211           75 RESSLAG   81 (665)
Q Consensus        75 l~p~~~~   81 (665)
                      ++|++..
T Consensus        96 ~~p~~~k  102 (153)
T d2fbna1          96 IDKNNVK  102 (153)
T ss_dssp             HSTTCHH
T ss_pred             ccchhhh
Confidence            9999863

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=8.4e-05  Score=60.09  Aligned_cols=51  Identities=8%  Similarity=-0.027  Sum_probs=46.3

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL   59 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l   59 (665)
                      ...+.+|.|+|.+|+++|+|++|+..+++||+++|+++.++.+++.....|
T Consensus        43 ~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            346889999999999999999999999999999999999999988776554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=0.00038  Score=58.53  Aligned_cols=83  Identities=12%  Similarity=-0.086  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211           11 VATLYVNRASVLQKRD---HLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE   86 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~---~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~   86 (665)
                      -...-+|-|.++.+..   +.++++.-++.+++.+|.. -+.||.+|.+++++|+|+.|...++++++++|+|.....++
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            4567788999998765   4678999999999999876 48999999999999999999999999999999999877777


Q ss_pred             HHHHHHH
Q 048211           87 SELKIIL   93 (665)
Q Consensus        87 ~~l~~~~   93 (665)
                      +.++..+
T Consensus       114 ~~Ie~~~  120 (124)
T d2pqrb1         114 SMVEDKI  120 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0003  Score=74.86  Aligned_cols=78  Identities=12%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH-HHHHHHHH
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG-KKQIESEL   89 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~-~~~~~~~l   89 (665)
                      ..++.|.|.++..+++|++|+..+.+|++++|+++.+|+.+|.++...|++.+|+..|.+|+.++|.... ...+...+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999887653 33443333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=9.3e-05  Score=62.95  Aligned_cols=65  Identities=8%  Similarity=-0.047  Sum_probs=57.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCChH
Q 048211           16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE---NHDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~---~~~~A~~~~~~al~l~p~~~   80 (665)
                      .|.+..+..++++++|.+.+.+||+++|+++.++++.|.++...+   ++++|+..|+++++.+|++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch
Confidence            467778999999999999999999999999999999999998754   45679999999999988764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.25  E-value=0.00047  Score=66.85  Aligned_cols=65  Identities=11%  Similarity=-0.051  Sum_probs=59.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211           20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ   84 (665)
Q Consensus        20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~   84 (665)
                      .-.++.|++++|+..+.++++.+|++++++..+|+++...|++++|+..|+++++++|+......
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~   68 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS   68 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            44677899999999999999999999999999999999999999999999999999999865433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.0022  Score=58.01  Aligned_cols=71  Identities=6%  Similarity=-0.035  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----------------------AKAWYRRGKVNVSLENHDDAVHD   68 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----------------------~ka~~r~a~~~~~l~~~~~A~~~   68 (665)
                      ....+.+++......|++++|++.+.+||++.++.                      ..++.+++.++..+|++++|+..
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            66788999999999999999999999999997653                      26789999999999999999999


Q ss_pred             HHHHHhcCCChHH
Q 048211           69 LTIAKNRESSLAG   81 (665)
Q Consensus        69 ~~~al~l~p~~~~   81 (665)
                      ++++++++|.++.
T Consensus        90 ~~~al~~~P~~e~  102 (179)
T d2ff4a2          90 LEALTFEHPYREP  102 (179)
T ss_dssp             HHHHHHHSTTCHH
T ss_pred             HHHHHHhCCccHH
Confidence            9999999999874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0018  Score=63.36  Aligned_cols=70  Identities=16%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211            9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus         9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      .+.+.++.-||.+++..|++++|+..+++||+..|++     ..++..+|.++..+|++++|+..|++++++.+.
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            4678888889999999999999999999999999875     468899999999999999999999999887543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0014  Score=64.01  Aligned_cols=76  Identities=8%  Similarity=-0.064  Sum_probs=65.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211            3 ANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE   76 (665)
Q Consensus         3 ~~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~   76 (665)
                      ..+.+.......+.|+|.+|+.+|++++|+..+++++..      .|..+.++..+|.++..+|++++|++.|++++++.
T Consensus       242 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            345556677888999999999999999999999999865      25567899999999999999999999999999875


Q ss_pred             CC
Q 048211           77 SS   78 (665)
Q Consensus        77 p~   78 (665)
                      +.
T Consensus       322 ~~  323 (366)
T d1hz4a_         322 NR  323 (366)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.011  Score=58.36  Aligned_cols=65  Identities=9%  Similarity=-0.004  Sum_probs=42.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCChH
Q 048211           16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN--HDDAVHDLTIAKNRESSLA   80 (665)
Q Consensus        16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~--~~~A~~~~~~al~l~p~~~   80 (665)
                      .+.+..+...+++++|+..++++++.+|+++.+|+.+|.++..++.  +++|+..++++++++|.+.
T Consensus        77 ~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~  143 (334)
T d1dcea1          77 ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF  143 (334)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhh
Confidence            3444556666666677777777777777777777777666666654  5666667777777666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0035  Score=61.00  Aligned_cols=69  Identities=20%  Similarity=0.067  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQIC------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~   78 (665)
                      -.+.+|.+.|.+|..+++|++|++.+.+|+++.      ++.+++|..+|.++..+|++++|++.|++++++.+.
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~  109 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH  109 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhh
Confidence            356789999999999999999999999999983      234678999999999999999999999999987443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.02  E-value=0.008  Score=59.32  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211           11 VATLYVNRASVLQKRDH--LVECLRDCNRAVQICPSYAKAW-YRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK   82 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~--~~~al~d~~~al~~~p~~~ka~-~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~   82 (665)
                      ...++.+|+.++..++.  +++|+..+.++++.+|.+..++ ++.|.++...+.+++|++.++++++++|++...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a  180 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHH
Confidence            45678999999988875  8999999999999999999886 567899999999999999999999999998744

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0087  Score=57.99  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCC
Q 048211            8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVS-LENHDDAVHDLTIAKNRES   77 (665)
Q Consensus         8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~-l~~~~~A~~~~~~al~l~p   77 (665)
                      ....+.+|.|.|.+|.++|++++|++.+++|+++.+..      ..++.++|.++.. +|++++|++.|++++++.+
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999985433      5778899998855 7999999999999988743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.021  Score=47.54  Aligned_cols=46  Identities=7%  Similarity=-0.164  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVN   56 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~   56 (665)
                      ...++++.|.+|+++|+|+.|++.++++|+++|++..|..-+-.+.
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            4578999999999999999999999999999999998865544443

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=95.13  E-value=0.0034  Score=52.53  Aligned_cols=32  Identities=19%  Similarity=0.229  Sum_probs=27.4

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCC
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEP  151 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P  151 (665)
                      .+|+|+.|+..|+||||+++|++||+|..-..
T Consensus         4 ~~v~v~~s~~~G~GvfA~~~i~~g~~i~~~~g   35 (119)
T d2g46a1           4 DRVIVKKSPLGGYGVFARKSFEKGELVEECLC   35 (119)
T ss_dssp             SSCEECCCSSCSSCEEECSCBCTTCCCEEEEC
T ss_pred             CcEEEEEcCCCceEEEECchhhCCCEEecccE
Confidence            36788999999999999999999999875433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.34  E-value=0.052  Score=51.76  Aligned_cols=62  Identities=10%  Similarity=0.073  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048211           10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI   71 (665)
Q Consensus        10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~   71 (665)
                      -.+.++.+.+.+|...|+|++|+..++++++++|++..++...+.++...+..+++...+..
T Consensus        28 ~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~   89 (264)
T d1zbpa1          28 KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT   89 (264)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence            36678999999999999999999999999999999999999888888877777666554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.015  Score=61.24  Aligned_cols=69  Identities=9%  Similarity=-0.017  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211           11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG   81 (665)
Q Consensus        11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~   81 (665)
                      .+..+.|.+.++.+.+++++|+..+.+++..+|  ..+++++|.++...|+|++|+..|++|++++|++..
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~  187 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ  187 (497)
T ss_dssp             ------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH
Confidence            455678899999999999999999999998864  578999999999999999999999999999999873

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=92.24  E-value=0.26  Score=45.79  Aligned_cols=63  Identities=11%  Similarity=0.072  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 048211           12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRE   76 (665)
Q Consensus        12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~   76 (665)
                      +.++.|.+..+++.++|++|++.+++|.+.  +++.|++++|.++..    ..++..|...++.+....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            567899999999999999999999999886  799999999999987    678999999999877654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=90.63  E-value=0.28  Score=45.60  Aligned_cols=65  Identities=11%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 048211           12 ATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRESS   78 (665)
Q Consensus        12 a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~p~   78 (665)
                      +.+..|.|..|..    ..+++.|+..+.+|.+.  +++++++++|.++..    .++++.|++.|++|......
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            5667788888887    66899999999999887  689999999998876    44788899999998877544

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=90.29  E-value=0.06  Score=51.87  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             eeeEeeecCCCCcccccccCCCCCCcccccCCce
Q 048211          120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYA  153 (665)
Q Consensus       120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~  153 (665)
                      ..++|+.++.+|+||||+++|++|+.|..-.+-+
T Consensus       125 ~~lev~kt~~kG~Gv~a~~~I~kGt~I~eY~Gev  158 (284)
T d1ml9a_         125 VPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEI  158 (284)
T ss_dssp             SCEEEEECSSSCEEEECSSCBCTTCEEEECCCEE
T ss_pred             cCEEEEEcCCCceEEeeCCCcCCCCEEEEecCcc
Confidence            5789999999999999999999999997555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=89.32  E-value=1  Score=37.07  Aligned_cols=48  Identities=8%  Similarity=-0.009  Sum_probs=24.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 048211           26 DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNR   75 (665)
Q Consensus        26 ~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l   75 (665)
                      .++++|+..+.+|.+.  +++.+.+++|..+..    ..+++.|++.|+++.+.
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   88 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc
Confidence            3455555555555443  455555555555443    23445555555555444

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.06  E-value=0.09  Score=50.10  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             heeeEeeecCCCCcccccccCCCCCCcccccCCce
Q 048211          119 QVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYA  153 (665)
Q Consensus       119 ~~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~  153 (665)
                      ...++|+.++.+|+||+|+++|++|+.|..-..-+
T Consensus       135 ~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gev  169 (269)
T d1mvha_         135 TLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEV  169 (269)
T ss_dssp             CSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEE
T ss_pred             ccCEEEEEcCCCCeEEEeCcccCCCceEEEecceE
Confidence            35789999999999999999999999997655443

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=0.13  Score=45.23  Aligned_cols=34  Identities=9%  Similarity=0.163  Sum_probs=26.2

Q ss_pred             eeeEeeec--CCCCcccccccCCCCCCcccccCCce
Q 048211          120 VQLQCVTT--PDKGRGITSQYDIPEGSLVHSEEPYA  153 (665)
Q Consensus       120 ~~~~v~~s--~~~GR~lvAtrdi~~GevIl~e~P~~  153 (665)
                      ..|-|..|  +..|+||||+++|++|++|..-...+
T Consensus        21 ~~v~v~~S~Ip~~G~GlFA~~~I~kG~~I~~Y~G~~   56 (171)
T d2f69a2          21 ERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVR   56 (171)
T ss_dssp             TTEEEEECSSTTCCEEEEESSCBCTTCEEEEECCEE
T ss_pred             ceEEEEeeccCCCceehccCcccCCCCEEEEeeeEE
Confidence            34556665  57899999999999999997655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.37  E-value=0.99  Score=42.90  Aligned_cols=53  Identities=4%  Similarity=-0.112  Sum_probs=30.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211           25 RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES   77 (665)
Q Consensus        25 l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p   77 (665)
                      .|+.+.|..-++++++.+|+++..|...+..+...|+++.|...|++|++..|
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            34555555555555555555555555555555555555555555555555444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.35  E-value=0.9  Score=43.20  Aligned_cols=65  Identities=14%  Similarity=0.029  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211           15 YVNRASVLQKRDHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL   79 (665)
Q Consensus        15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~   79 (665)
                      +...+..+.++|+++.|..-++++|+.+|.. ..+|...+......|+++.|.+.|+++++..|.+
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            3444444455555555555555555555433 3345555555555555555555555555555544