Citrus Sinensis ID: 048223

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQEKLDLSKKTKCSV
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHHccccEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHccHHHccHHHHHHHHHHcccHHHHHHHHHHcccHccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHccccHHHHHHcccEEEccHHHHccHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHcHcccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
ipkvlllspeTLLRKLEFfhcegisnpdtvkilskypgllsrsldnhliptfnslshllhsSEKTIALIIRFpyilyhdadyyllpnvkilrdsgvpesdiIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLkcpwcmitseDKITAIMDFFVngmgwepaviakhpalttfsmekriiprGAVIQFLLSkglvksdtTYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQEKLdlskktkcsv
Flexible Loop (DISEMBL)
IPKVLLLSPETLLRKLEFfhcegisnpdtvKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLskglvksdttYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQekldlskktkcsv
Low Complexity Region (SEG)
IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDttylttllSYPEKTFMLRLMNYDDAPKLLKLYQEKLDLSKKTKCSV
Disordered region (IsUnstruct)
****LLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQE************
Disordered Region (DISOPRED)
IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQEKLDLS*K*****
Disordered Region (DISEMBL)
IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQEKLD*********
Disordered Region (DISPRO)
IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQEKLDL********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMNYDDAPKLLKLYQEKLDLSKKTKCSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
225432338	399	PREDICTED: uncharacterized protein LOC10	0.989	0.709	0.487	3e-71
225432336	389	PREDICTED: uncharacterized protein LOC10	0.968	0.712	0.501	2e-70
225432332	396	PREDICTED: uncharacterized protein LOC10	0.975	0.704	0.462	6e-68
147823269	719	hypothetical protein VITISV_017397 [Viti	0.975	0.388	0.462	8e-68
224118642	388	predicted protein [Populus trichocarpa]	0.975	0.719	0.482	3e-67
225432334	397	PREDICTED: uncharacterized protein LOC10	0.986	0.710	0.468	4e-66
147823268	396	hypothetical protein VITISV_017396 [Viti	0.986	0.712	0.465	2e-65
224135573	387	predicted protein [Populus trichocarpa]	0.972	0.718	0.459	7e-64
147853204	384	hypothetical protein VITISV_003242 [Viti	0.968	0.721	0.459	8e-64
225432342	384	PREDICTED: uncharacterized protein LOC10	0.968	0.721	0.459	1e-63

>gi|225432338|ref|XP_002274845.1| PREDICTED: uncharacterized protein LOC100252802 [Vitis vinifera]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 140/287 (48%), Positives = 190/287 (66%), Gaps = 4/287 (1%)

Query: 1   IPKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLL 59
           +P++L   P+ TLL KL+FF+ +G S PD  KI+   PG+L RSL+N +IP+FN     L
Sbjct: 106 LPRLLASDPDKTLLPKLQFFYSKGASRPDVAKIVVSTPGILYRSLENQIIPSFNFFKDFL 165

Query: 60  HSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFF 119
            S E  I +I RF  IL  D   Y+  N+  L++ GVP+S+I   + + P  F+  P  F
Sbjct: 166 QSDEMAITVIKRFSRILLFDLHTYVASNINALQEFGVPKSNIAGLLMNRPMAFMVRPNLF 225

Query: 120 EKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPW 179
            +N+  VK+MG NP ++KFV+AI A   M +S WE K+  YK+WGWSE+E   AF+K P 
Sbjct: 226 RENLEEVKKMGFNPSQMKFVIAIHAMRAMGKSTWERKIDAYKRWGWSEEEIRLAFIKLPR 285

Query: 180 CMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKS 239
           CM  SEDKI A MDFFVN MG E ++IA+ P L   S+EKRIIPR +VIQ LLSKGL+K+
Sbjct: 286 CMTHSEDKIMATMDFFVNKMGRESSLIARRPLLIPLSLEKRIIPRYSVIQVLLSKGLIKN 345

Query: 240 DTTYLTTLLSYPEKTFMLRLMN--YDDAPKLLKLYQEKLDLSKKTKC 284
           DT+ L  L    EK F+ + +N   ++AP+L+KLYQEK++LSKK  C
Sbjct: 346 DTS-LVVLFESTEKMFLRKFVNGFKEEAPQLMKLYQEKINLSKKQDC 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432336|ref|XP_002274817.1| PREDICTED: uncharacterized protein LOC100257952 [Vitis vinifera]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/281 (50%), Positives = 186/281 (66%), Gaps = 4/281 (1%)

Query: 1   IPKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLL 59
           +P++L   P+ TLL KL+FF+ +G S PD  KI+   PG+L RSL+N +IP+FN L   L
Sbjct: 110 LPRLLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTPGILKRSLENQIIPSFNFLKDFL 169

Query: 60  HSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFF 119
            S E  I ++ RF  IL  D   Y+  N+  L++ GVP+S+I   +   P  F+ +P  F
Sbjct: 170 QSDEMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMYRPMAFMVNPNLF 229

Query: 120 EKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPW 179
            KN+  VK+MG NP ++KFVLAIQA     ES WE K+ +YKKWGWSE+E   AF K PW
Sbjct: 230 RKNLEEVKKMGFNPSQMKFVLAIQAMRAGGESCWERKIDIYKKWGWSEEEIRLAFTKSPW 289

Query: 180 CMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKS 239
           CMI SEDKI A MDFFVN MG E ++IA  P L   S+EKRIIPR +V+Q LLSKGL+  
Sbjct: 290 CMIYSEDKIMAKMDFFVNKMGRESSLIAHRPFLIGLSLEKRIIPRYSVVQVLLSKGLINK 349

Query: 240 DTTYLTTLLSYPEKTFMLRLMNY--DDAPKLLKLYQEKLDL 278
           D + L  L    EKTF+ R +N   ++AP+L+KLYQEK++L
Sbjct: 350 DIS-LVVLFESTEKTFLERFVNAYKEEAPQLIKLYQEKINL 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432332|ref|XP_002276324.1| PREDICTED: uncharacterized protein LOC100256384 [Vitis vinifera]

 Score =  263 bits (672), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/283 (46%), Positives = 188/283 (66%), Gaps = 4/283 (1%)

Query: 2   PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
           P++LL  P+ TLL KL+FF+ +G S PD  KI++  P ++ RSL+N +IP++N     L 
Sbjct: 111 PQLLLSDPDKTLLPKLQFFYSKGASKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQ 170

Query: 61  SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
           S +  I ++ RF  IL  D   Y+  N+  L++ GVP+S+I   + + P  F+  P  F 
Sbjct: 171 SDKMAITVVKRFSRILLFDIHTYVASNMNALQEFGVPKSNIAGLLRNQPMAFMVRPNLFR 230

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
           +N+  VK+MG NP ++KFV+A+QA     +S WE K+ +YK WGWSE+E   AF K PWC
Sbjct: 231 ENLEEVKKMGFNPSQMKFVIAVQAIRAGGKSSWERKIDIYKSWGWSEEEIRLAFTKSPWC 290

Query: 181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
           MI SEDKI   MDFFVN MG E ++IA+ P L + S+EKRIIPR +V+Q LLSKGL+  D
Sbjct: 291 MIYSEDKIMTTMDFFVNKMGRESSLIARRPVLISHSLEKRIIPRYSVVQVLLSKGLIDKD 350

Query: 241 TTYLTTLLSYPEKTFMLRLMNY--DDAPKLLKLYQEKLDLSKK 281
            + L T+    EK F+ + +N   ++AP+L+KLYQEK++LS+K
Sbjct: 351 FS-LPTVFQSTEKMFLHKFVNVYKEEAPQLMKLYQEKINLSEK 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823269|emb|CAN77553.1| hypothetical protein VITISV_017397 [Vitis vinifera]

 Score =  263 bits (671), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 131/283 (46%), Positives = 188/283 (66%), Gaps = 4/283 (1%)

Query: 2   PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
           P++LL  P+ TLL KL+FF+ +G S PD  KI++  P ++ RSL+N +IP++N     L 
Sbjct: 108 PQLLLSDPDKTLLPKLQFFYSKGTSKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQ 167

Query: 61  SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
           S +  I ++ RF  IL  D   Y+  N+  L++ GVP+S+I   + + P  F+  P  F 
Sbjct: 168 SDKMAITVVKRFSRILLFDIHTYVASNMNALQEFGVPKSNIAGLLRNQPMAFMVRPNLFR 227

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
           +N+  VK+MG NP ++KFV+A+QA     +S WE K+ +YK WGWSE+E   AF K PWC
Sbjct: 228 ENLEEVKKMGFNPSQMKFVIAVQAIRAGGKSSWERKIDIYKSWGWSEEEIRLAFTKSPWC 287

Query: 181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
           MI SEDKI   MDFFVN MG E ++IA+ P L + S+EKRIIPR +V+Q LLSKGL+  D
Sbjct: 288 MIYSEDKIMTTMDFFVNKMGRESSLIARRPVLISHSLEKRIIPRYSVVQVLLSKGLIDKD 347

Query: 241 TTYLTTLLSYPEKTFMLRLMNY--DDAPKLLKLYQEKLDLSKK 281
            + L T+    EK F+ + +N   ++AP+L+KLYQEK++LS+K
Sbjct: 348 FS-LPTVFQSTEKMFLHKFVNVYKEEAPQLMKLYQEKINLSEK 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118642|ref|XP_002317871.1| predicted protein [Populus trichocarpa] gi|222858544|gb|EEE96091.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 136/282 (48%), Positives = 191/282 (67%), Gaps = 3/282 (1%)

Query: 1   IPKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLL 59
            PKVL  +P+ TLL +L+FF   G+S+ +   +    P LL RSL+N + PTFN LS LL
Sbjct: 108 FPKVLSCNPDKTLLPRLDFFLSRGMSSTELATLFCIIPPLLHRSLENIITPTFNFLSDLL 167

Query: 60  HSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFF 119
            S++K I +   +P+I+YH  + YL P V ILR++G+P+S I   I  WP+     P  F
Sbjct: 168 QSNDKAITVAKTYPFIIYHRPESYLQPYVSILRENGIPKSHIASLIYKWPRTVRACPIRF 227

Query: 120 EKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPW 179
              V +VKEMG +P +L F LA+ A+   S+S WE K+ VYK+WGWS++E LAAF + PW
Sbjct: 228 RNTVETVKEMGFDPSKLVFTLAVLARSAQSKSGWEKKVGVYKRWGWSDEEVLAAFKRNPW 287

Query: 180 CMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKS 239
           CM++SEDKI A+MDF VN MG E + +A+HP L   S+EKR+IPR +V+QFL S  L+  
Sbjct: 288 CMMSSEDKIMAVMDFLVNNMGCESSYVAEHPILLLLSLEKRLIPRASVLQFLQSNKLI-D 346

Query: 240 DTTYLTTLLSYPEKTFMLRLMN-YDDAPKLLKLYQEKLDLSK 280
           +   L TL  Y EK+F+ + ++ +D+AP+LLKLY+EKL+LSK
Sbjct: 347 EKPNLATLFKYSEKSFLHKFVDGFDEAPQLLKLYREKLNLSK 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432334|ref|XP_002276352.1| PREDICTED: uncharacterized protein LOC100251002 [Vitis vinifera]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 134/286 (46%), Positives = 187/286 (65%), Gaps = 4/286 (1%)

Query: 2   PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
           P++LL  P+ TLL KL+FF+ +G S PD  KI+   P +L RSL+N +IP+FN     L 
Sbjct: 112 PQLLLSDPDKTLLPKLQFFYSKGASWPDIAKIVVCSPSILKRSLENQIIPSFNFFKDFLQ 171

Query: 61  SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
           S +  I ++ RF  IL  D   Y+  N+  L++ GVP+S+I   + + P  F+  P  F 
Sbjct: 172 SDKMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMNQPMAFMVRPNLFR 231

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
           +N+  VK+MG NP ++KFV+AIQA     +S WE K+ +YK+WGWSE+E   AF K PWC
Sbjct: 232 ENLEEVKKMGSNPSQMKFVIAIQAIRAGGKSSWERKIDIYKRWGWSEEEIRLAFTKSPWC 291

Query: 181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
           MI SEDKI A MDFFVN MG E + IA+ P L + S+EKRIIPR +V+Q LLSKGL+  D
Sbjct: 292 MIYSEDKIMATMDFFVNKMGRESSSIARRPQLISPSLEKRIIPRYSVVQVLLSKGLISKD 351

Query: 241 TTYLTTLLSYPEKTFMLRLMNY--DDAPKLLKLYQEKLDLSKKTKC 284
            + L+ +    E  F+ + ++   ++AP+LL LYQEKL+L+KK  C
Sbjct: 352 FS-LSAVFQSTEIMFLHKFVDVYKEEAPQLLNLYQEKLNLTKKQDC 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823268|emb|CAN77552.1| hypothetical protein VITISV_017396 [Vitis vinifera]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/286 (46%), Positives = 185/286 (64%), Gaps = 4/286 (1%)

Query: 2   PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
           P++LL  P+ TLL KL+FF+ +G S PD  KI+   P +L RSL+N +IP+FN     L 
Sbjct: 111 PQLLLSDPDKTLLPKLQFFYSKGASWPDIAKIVVCSPSILKRSLENQIIPSFNFFKDXLQ 170

Query: 61  SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
           S +  I ++ RF  IL  D   Y+  N+  L++ GVP+S+I   + + P  F+  P  F 
Sbjct: 171 SDKMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMNQPMAFMVRPNLFR 230

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
           +N+  VK MG NP ++KFV+AIQA     +  WE K+ +YK+WGWSE+E   AF K PWC
Sbjct: 231 ENLEEVKXMGFNPSQMKFVIAIQAIRAGGKXSWERKIDIYKRWGWSEEEIRLAFTKSPWC 290

Query: 181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
           MI SEDKI A MDFFVN MG E + IA+ P L + S+EKRIIPR +V+Q LLSKGL+  D
Sbjct: 291 MIYSEDKIMATMDFFVNKMGRESSSIARRPQLISPSLEKRIIPRYSVVQVLLSKGLINKD 350

Query: 241 TTYLTTLLSYPEKTFMLRLMNY--DDAPKLLKLYQEKLDLSKKTKC 284
            + L+ +    E  F+ + ++   ++AP+LL LYQEKL+L+KK  C
Sbjct: 351 FS-LSAVFQSTEIMFLHKFVDVYKEEAPQLLNLYQEKLNLTKKQDC 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135573|ref|XP_002322107.1| predicted protein [Populus trichocarpa] gi|222869103|gb|EEF06234.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 183/281 (65%), Gaps = 3/281 (1%)

Query: 2   PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
           P+VL  +PE TLL KLEFFH +G+SN D  +IL  YP +L RSL+N +   FN L +LL 
Sbjct: 108 PRVLSCNPEKTLLPKLEFFHSKGMSNNDIARILCTYPHILVRSLENCITLNFNFLGNLLQ 167

Query: 61  SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
           S++KTIA   R+  ILYH  D +L P + IL + GVP+  I   +  WP+  +  P +  
Sbjct: 168 SNDKTIAAAKRYSPILYHKPDRFLKPCIDILEEYGVPKKHIASLVHRWPRSVMMSPNYLR 227

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
           + V  V+EMG +PL+ +F  A+    ++SES WE +L VYK WGWSE++  AAF+K PWC
Sbjct: 228 RIVEKVREMGCDPLKPQFTTAVMVMSLLSESGWERRLGVYKSWGWSEEDVHAAFIKEPWC 287

Query: 181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
           M+TS+DKI A+MDF VN M  EP+ I K+P L    ++   IPR +V+ FLLSK L+++ 
Sbjct: 288 MMTSDDKIMAVMDFLVNNMDCEPSFIVKNPYLLKPGLKTTFIPRASVVHFLLSKQLIETK 347

Query: 241 TTYLTTLLSYPEKTFMLRLM-NYDDAPKLLKLYQEKLDLSK 280
              L TL    EK F+ + +  +++AP+LLKLY ++ +LSK
Sbjct: 348 PN-LVTLFLCSEKMFLEKFVYRFEEAPQLLKLYGDQSNLSK 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853204|emb|CAN78550.1| hypothetical protein VITISV_003242 [Vitis vinifera]

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 182/281 (64%), Gaps = 4/281 (1%)

Query: 2   PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
           P++L+  P+ +LL KL FF+ +G SNPD VKI++  P +L RSL+N +IP+FN       
Sbjct: 104 PQLLVSDPDKSLLLKLHFFYSKGASNPDVVKIIASCPVILKRSLENQIIPSFNFFKDFFQ 163

Query: 61  SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
           S E T+A + RF  +L  +    +  N+  L++SGVP+S+I   +   P+ F+  P  F 
Sbjct: 164 SEEMTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNIAALLSLQPRAFMVRPNHFR 223

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
           + +  VK+MG +P + +F  A+QA   MS+S WE K+  YK+WGWSE++   AF K PWC
Sbjct: 224 EILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYKRWGWSEEDIWLAFTKSPWC 283

Query: 181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
           MI SEDKI A MDFFVN MG E ++IA  P L   S+EKRIIPR +V+Q LLSKGL+  D
Sbjct: 284 MIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRIIPRYSVVQVLLSKGLIDKD 343

Query: 241 TTYLTTLLSYPEKTFMLRLMN--YDDAPKLLKLYQEKLDLS 279
            + L  L    EK F+ + +N   ++AP+LL LYQEK++LS
Sbjct: 344 IS-LVVLFESTEKMFLEKFVNGYKEEAPQLLNLYQEKVNLS 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432342|ref|XP_002276393.1| PREDICTED: uncharacterized protein LOC100240766 [Vitis vinifera]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 182/281 (64%), Gaps = 4/281 (1%)

Query: 2   PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
           P++L+  P+ +LL KL FF+ +G SNPD VKI++  P +L RSL+N +IP+FN       
Sbjct: 104 PQLLVSDPDKSLLPKLHFFYSKGASNPDVVKIIASCPVILKRSLENQIIPSFNFFKDFFQ 163

Query: 61  SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
           S E T+A + RF  +L  +    +  N+  L++SGVP+S+I   +   P+ F+  P  F 
Sbjct: 164 SEEVTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNIAALLSLQPRAFMVRPNHFR 223

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
           + +  VK+MG +P + +F  A+QA   MS+S WE K+  YK+WGWSE++   AF K PWC
Sbjct: 224 EILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYKRWGWSEEDIWLAFTKSPWC 283

Query: 181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
           MI SEDKI A MDFFVN MG E ++IA  P L   S+EKRIIPR +V+Q LLSKGL+  D
Sbjct: 284 MIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRIIPRYSVVQVLLSKGLIDKD 343

Query: 241 TTYLTTLLSYPEKTFMLRLMN--YDDAPKLLKLYQEKLDLS 279
            + L  L    EK F+ + +N   ++AP+LL LYQEK++LS
Sbjct: 344 IS-LVVLFESTEKMFLEKFVNGYKEEAPQLLNLYQEKVNLS 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.944	0.666	0.385	2.8e-43
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.940	0.689	0.334	2.8e-34
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.825	0.603	0.276	5.4e-22
TAIR|locus:2207265	399	AT1G79220 [Arabidopsis thalian	0.905	0.649	0.262	1.7e-15
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.797	0.506	0.268	1.7e-13
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.646	0.400	0.276	1.7e-12
TAIR|locus:2036843	457	AT1G61960 "AT1G61960" [Arabido	0.692	0.433	0.236	9.9e-12
TAIR|locus:2018057	437	AT1G62120 "AT1G62120" [Arabido	0.430	0.281	0.274	1.4e-11
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.744	0.509	0.280	1.9e-11
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.678	0.424	0.237	9.1e-10

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 106/275 (38%), Positives = 157/275 (57%)

Query:     2 PKVLLLSPET-LLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
             P +LL + E+ LL KL FF   G+S     + L+  P +L+RSL N LIP++N L  +L 
Sbjct:   126 PVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLD 185

Query:    61 SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
             S EK +A + R  ++   D    L+PN+  + ++GVPE  I   +  +P+  ++    F+
Sbjct:   186 SDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQ 245

Query:   121 KNVASVKEMGINPLRLKFVLAIQAKCIM-SESQWESKLHVYKKWGWSEQEWLAAFLKCPW 179
                   +EMG NP +  FVLAI A     ++S W+    VY++WGWSE + + AF K P 
Sbjct:   246 AIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPH 305

Query:   180 CMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKS 239
             CM+ SE KI   M++FVN M   P  IA+ P +  FS+EKRIIPR +V + L+S GLVK 
Sbjct:   306 CMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKE 365

Query:   240 DXXXXXXXXSYPEKTFMLRLM-NYDDA-PKLLKLY 272
             D           EK F+ +L+  Y++  P+L+ LY
Sbjct:   366 DWSLTSLLVPV-EKVFLEKLVIKYEEELPELMNLY 399

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 91/272 (33%), Positives = 144/272 (52%)

Query:     2 PKVLLLSPETLLR-KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
             P+VL LSPE ++  KL FF   G S  DT K++S  P +LS SL   LIP ++SL  +L 
Sbjct:   113 PRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILV 172

Query:    61 SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
               E  +  + R          + +   V I R+ GVP+  I   +++ P  F    + F 
Sbjct:   173 EEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFN 232

Query:   121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
             + +  V   G +P +  FV A+ A    SES  E K  +++ +GWS+++++AA ++ P C
Sbjct:   233 EVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNC 292

Query:   181 MITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD 240
             +  S++KI   +++ VN +G +   I   P + + SMEKRI PR  VI  LLSKGLVK +
Sbjct:   293 VTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKE 352

Query:   241 XXXXXXXXSYPEKTFMLR-LMNY-DDAPKLLK 270
                           FM + ++ Y D+ P+L++
Sbjct:   353 DINYFTILKLKSSEFMDKFVLKYQDEMPQLVQ 384

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 5.4e-22, P = 5.4e-22
 Identities = 66/239 (27%), Positives = 120/239 (50%)

Query:     2 PKVLLLSPETLLR-KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
             P+++  + E +L  KL FF   G +     K +S+   ++  SL   LIPT   L  ++ 
Sbjct:    96 PRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVA 155

Query:    61 SSEKTIALII-RFPYILY-HDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKF 118
                + + +I+ R  ++L   D + +LLPN+  L   G+  S +   +   P++F    + 
Sbjct:   156 PKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEK 215

Query:   119 FEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCP 178
                 V+   ++G        V A+ +   +SE  ++ K+ ++   G+SE E      + P
Sbjct:   216 LRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSP 275

Query:   179 WCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLV 237
               +  SEDK+T   +F++  MG E   +AK P + ++++EKR+IPR  V+Q L  KGL+
Sbjct:   276 GLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLL 334

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207265 AT1G79220 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 72/274 (26%), Positives = 125/274 (45%)

Query:    15 KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPY 74
             KL      GI++ D VKIL+  P   S  L   L    N    +L S E    +IIR P 
Sbjct:   118 KLSLLKPLGITSSDLVKILNCRPRFFSCRLV--LDERINYFMEILGSKEVLRRVIIRNPS 175

Query:    75 ILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGIN-- 132
             ++ +D D  + P ++  +  G  + D++  + S P L  R   F  +    +++ G+   
Sbjct:   176 LMLYDLDDKIKPAIEYYKGLGFSQQDLVAMLISRPTLIPR-TNFNNEKFEYIEKTGVTRE 234

Query:   133 PLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIM 192
                 K+V  I     M     E K+   +K+G+SE+E    + KCP  +  S +K+   M
Sbjct:   235 SKMFKYVAVIIGVSRMETI--EEKVRNLEKFGFSEEEIWHLYGKCPILLSLSVEKVQRNM 292

Query:   193 DFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLS---KGLVKSDXXXXXXXXS 249
              F +  M      + KHP L   ++E R+ PR  +++ +L    K L+K          S
Sbjct:   293 TFVIASMKLPAHSVVKHPCLLLLNLESRLKPRADLVKRVLEMRLKPLIKEVSIFRAVRMS 352

Query:   250 YPEKTFM-LRLMNY--DDAPKLLKLYQEKLDLSK 280
               EK F+ + +M +  D A +L++ Y++  ++ +
Sbjct:   353 --EKRFLKVYVMCHPQDIATELMEFYEKSKNMKR 384

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 65/242 (26%), Positives = 116/242 (47%)

Query:     2 PKVLLLSPETLLR-KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
             P++L+   E  LR KL+F    G S+ + ++I+S  P +L +  +  +   ++ +  ++ 
Sbjct:   109 PRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVSLYYDFVKDIMQ 168

Query:    61 SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
               +   +L I  P           + N+ +LR+ GVP+  +   + S  +      KF E
Sbjct:   169 DGK---SLCISCP----EGKKGNRIRNISVLRELGVPQKLLFSLLISRYQPVCGKEKF-E 220

Query:   121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
             +++  V +MG +P + KFV A+     MSE   E K++VYK+ G+SE E  A F K P+ 
Sbjct:   221 ESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYF 280

Query:   181 MITSEDKITAIMDFFVN-GMGWEPAV-IAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVK 238
             +  SE KI  + +     G+  E  + + K       S E++I+     I+  L  G  +
Sbjct:   281 LKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCIRSSEQKILDS---IEMFLGLGFSR 337

Query:   239 SD 240
              D
Sbjct:   338 DD 339

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 52/188 (27%), Positives = 97/188 (51%)

Query:     2 PKVLLLSPETLLR-KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH 60
             P++LL+  E  L  KL+F    G S+P+  +I+S  P +L       L   ++ +  ++ 
Sbjct:   109 PRLLLIDAEKSLDIKLQFLESRGASSPELTQIVSTVPKILGMKEGKSLGRYYDFVKEIIE 168

Query:    61 SSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
             + + +    +  P +   +     + NV +LRD GVP+  +   + S  +       F E
Sbjct:   169 ADKSSKYETLCQP-LPEANRQGNKIRNVSVLRDLGVPQKLLFSLLISDAQPVCGKENF-E 226

Query:   121 KNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWC 180
             +++  V EMG +P   KFV A++A    ++   E +++VYK +G++ ++  A F KCP+ 
Sbjct:   227 ESLKKVVEMGFDPTTSKFVQALRAVYRFTDKTIEERVNVYKGFGFAVEDVWAMFKKCPYF 286

Query:   181 MITSEDKI 188
             + +SE KI
Sbjct:   287 LNSSEKKI 294

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036843 AT1G61960 "AT1G61960" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 9.9e-12, P = 9.9e-12
 Identities = 48/203 (23%), Positives = 93/203 (45%)

Query:    75 ILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPL 134
             ++Y  +D  +   V + +  G   +D+    + WP       K       ++K  G+   
Sbjct:   249 VIYRMSDKTIEEKVNVYKRLGFGVADVWAIFKKWPSFLSYSEKKITHTFETLKSCGLLKH 308

Query:   135 RLKFVLAIQAKCIMS-ESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMD 193
              +  +L    KCI S E +  + +  +   G+S  E+     + P C+  + + +    +
Sbjct:   309 EVLLLLKKHPKCICSSEQKIVNSIETFLGLGFSRDEFAMMVKRYPQCIDYTAETVKKKTE 368

Query:   194 FFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVK--SDXXXXXXXXSYP 251
             F V  M W    +   P +  +S+EKR +PR  VI+ L+SKGL+K  S+        +  
Sbjct:   369 FIVKNMNWPLEALVSIPQVFGYSLEKRTVPRCNVIKTLISKGLMKDGSEAPPMSSVLTST 428

Query:   252 EKTFMLR-LMNYDD-APKLLKLY 272
             ++ F+ R +M +D  AP+L+ ++
Sbjct:   429 DQAFLRRYVMKHDKLAPELMAIF 451

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018057 AT1G62120 "AT1G62120" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 34/124 (27%), Positives = 63/124 (50%)

Query:   149 SESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAK 208
             SE + E+ +  +   G+S  E+L    + P C+  S + +    +F V  M W    +A 
Sbjct:   294 SEKKIENSVETFLGLGFSRDEFLMMVKRFPQCIGYSTELMKTKTEFLVTEMNWPLKAVAS 353

Query:   209 HPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDXXXXXXXXSYPEKTFM-LRLMNYDDAPK 267
              P +  +S+EKR +PR  VI+ L+SKGL++S+        +   + F+ + +  +DD   
Sbjct:   354 IPQVLGYSLEKRTVPRCNVIKVLISKGLLESELPPISSVLTSTSEVFLYMYVRKHDDKQL 413

Query:   268 LLKL 271
             + +L
Sbjct:   414 VAEL 417

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 64/228 (28%), Positives = 110/228 (48%)

Query:     2 PKVLLLSPETLLR-KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSH-LL 59
             P++L+   E  L  KL+F    G S+ +  +I+S  P +L +     +   ++ +   LL
Sbjct:   109 PQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLL 168

Query:    60 HSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFF 119
               S K   L    P     +     + NV +LR+ G+P   +   + S  +      KF 
Sbjct:   169 EKSSKNEKLCHSLPQGNLENK----IRNVSVLRELGMPHKLLFSLLISDSQPVCGKEKF- 223

Query:   120 EKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPW 179
             E+ +  V EMG +P   KFV A+Q    M+E   E K+H+YK  G+   +  ++F K P 
Sbjct:   224 EETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPI 283

Query:   180 CMITSEDKITAIMDFFVNGMGW---EPAVIAKH-P---ALTTFSMEKR 220
              +  SE K+   ++ F+ G+G+   E A + KH P    L+T +++K+
Sbjct:   284 SLRVSEKKMLDSIETFL-GLGFSRDEFAKMVKHFPPCIGLSTETVKKK 330

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 49/206 (23%), Positives = 96/206 (46%)

Query:    74 YILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVA----SVKEM 129
             Y+ Y  +D  +   V      G+  +++    + WP       K+ EKN+     ++K +
Sbjct:   245 YVFYELSDKTIEEKVNAYIRLGLSVNEVWAVFKKWPFSL----KYSEKNIIQKFETLKRV 300

Query:   130 GINPLRLKFVLAIQAKCI-MSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKI 188
             G+    +  V+    +C+  SE +    +  + + G+++ E L    + P C+  + D +
Sbjct:   301 GLTKEEVCLVVKKYPECVGTSEEKIVKSVKTFLELGFTKDEVLMIIKRHPQCIGLAADSV 360

Query:   189 TAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDXXXXXXXX 248
                 +F V  MGW   V+A  P +  FS+EK ++PR  VI+ L+S GL+  +        
Sbjct:   361 KKKTEFLVKTMGWPLKVVASTPIVLGFSLEKFVLPRCNVIKALMSNGLI-GEMPAISSVL 419

Query:   249 SYPEKTFM-LRLMNYDDA-PKLLKLY 272
             + P+  F+ L +  + D  P+L  ++
Sbjct:   420 TSPKLKFLKLFVEKHQDVLPELNSIF 445

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam02536	345	pfam02536, mTERF, mTERF	3e-20
pfam02536	345	pfam02536, mTERF, mTERF	3e-18
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-06
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-06

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 88.3 bits (219), Expect = 3e-20
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 7/233 (3%)

Query: 8   SPETLLRKLEFFHCEGISNPDTVKIL-SKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTI 66
           +    +R +      G+       +L S+   +  + +    +     +         T 
Sbjct: 101 NNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCGKEVFEESLKKVVEM----GFDPTTF 156

Query: 67  A-LIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVAS 125
             +I + P +L + +D  + PNV+ L+  G    D+   ++  P+L     K   +    
Sbjct: 157 KRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEI 216

Query: 126 VKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSE 185
           +K  G+           Q     SE +  +K+      G+S +E      +CP  +  S 
Sbjct: 217 LKTCGLLEFLSVIKKMPQFVS-YSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSV 275

Query: 186 DKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVK 238
           +K+    +F V  M W    + + P +  +S+EKRI PR  V++ L+SKG   
Sbjct: 276 EKVKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSI 328

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 82.9 bits (205), Expect = 3e-18
 Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 9/239 (3%)

Query: 1   IPKVLLLSPET-LLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLL 59
            P +L    E  L  KL+F    G S  +  KI+S  P +L +     +   ++ L  ++
Sbjct: 21  YPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDFLKKII 80

Query: 60  HSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFF 119
            +     + + ++P  L    +   + NV +LR+ GVP   +   + S P+       F 
Sbjct: 81  VADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCGKEVFE 140

Query: 120 EKNVASVKEMGINPLRLKFVLAIQAKCI--MSESQWESKLHVYKKWGWSEQEWLAAFLKC 177
           E  +  V EMG +P   K V+A + + +   S+   +  +   K  G+S ++  A   KC
Sbjct: 141 ES-LKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKC 199

Query: 178 PWCMITSEDKITAIMDFFVNGMGWE-PAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKG 235
           P  + +SE K     +        E  +VI K P   ++S +K I+ +   I+FLL  G
Sbjct: 200 PELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQK-ILNK---IEFLLGLG 254

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 5   LLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEK 64
           L  + + +  ++EF H  G++  D    +++YP +L  S+  ++IP  + L  L  +   
Sbjct: 85  LPSTVDVMRERVEFLHKLGLTIED----INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSS 140

Query: 65  TIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLF 112
              L+ R+P +L+      L P VK L+   V   DI + +E +P+L 
Sbjct: 141 LPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELL 188

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 67/276 (24%), Positives = 122/276 (44%), Gaps = 23/276 (8%)

Query: 1   IPKVLLLSPETLLRKLE--------FFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTF 52
           IP+VL   PE L  KLE        +    G++  D   +L+++P +L   + N++ P  
Sbjct: 177 IPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKV 236

Query: 53  NSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLF 112
           + L  L         ++ + PYIL  D +  + PNV+ L + GV +  +   I  +P + 
Sbjct: 237 DYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDIL 296

Query: 113 ---LRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHV--YKKWGWSE 167
              L+  K  E+      ++ I+P     V+    + I+S ++  +  HV   +  G+S 
Sbjct: 297 GLDLK-AKLAEQQYWLTSKLKIDPEDFGRVIEKLPQ-IVSLNRNVALKHVEFLRGRGFSA 354

Query: 168 QEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAV 227
           Q+     ++CP  +  + + +   ++FF   M      + + PA  T+ +E RI PR   
Sbjct: 355 QDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYER 414

Query: 228 IQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMNYD 263
           +     KG+  S    L   L+  +  F  R M+ D
Sbjct: 415 VA---KKGIKCS----LAWFLNCSDDKFEQR-MSGD 442

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.89
KOG1267	413	consensus Mitochondrial transcription termination	99.87
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.51
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.39
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	91.39
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	89.77
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	86.0
PF04695	136	Pex14_N: Peroxisomal membrane anchor protein (Pex1	85.53

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=6.9e-51  Score=384.47  Aligned_cols=268  Identities=21%  Similarity=0.331  Sum_probs=234.3

Q ss_pred             CCceeecCcc-cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccC
Q 048223            1 IPKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHD   79 (286)
Q Consensus         1 ~P~lL~~~~~-~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s   79 (286)
                      ||++|.++++ ++.|+++||+++|++.+++++++.++|.+|++++++++.|+++||.++|++.+++++++.++|.+|+++
T Consensus       148 ~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~s  227 (487)
T PLN03196        148 YPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMR  227 (487)
T ss_pred             CCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcC
Confidence            6999999999 999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhcCCCchhHhhhhccCCeeEEecch-hHHHHHHHHHHcCCCCcchHHHH------------------
Q 048223           80 ADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPK-FFEKNVASVKEMGINPLRLKFVL------------------  140 (286)
Q Consensus        80 ~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~-~l~~~v~~l~~lG~~~~~~~~~~------------------  140 (286)
                      ++++++|+++||+++|++.++|.+++.++|++|+++.+ ++++++++|+++|++++....+.                  
T Consensus       228 ve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~  307 (487)
T PLN03196        228 VGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQ  307 (487)
T ss_pred             hhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHH
Confidence            98889999999999999999999999999999999876 59999999999888875432111                  


Q ss_pred             ---------------------HHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhc
Q 048223          141 ---------------------AIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGM  199 (286)
Q Consensus       141 ---------------------~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~  199 (286)
                                           .|+ +...+++++.++++||+++||+.+++..|+.++|++|++|.+++++|++||+++|
T Consensus       308 ~~fL~~~lG~s~e~i~~~v~k~P~-il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneM  386 (487)
T PLN03196        308 QYWLTSKLKIDPEDFGRVIEKLPQ-IVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEM  386 (487)
T ss_pred             HHHHHHhhCCCHHHHHHHHHhcch-hhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHh
Confidence                                 122 3345788999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCCCCccccccccccChhhHHHHhcC-CC--ChhHHHHHHHhhc
Q 048223          200 GWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMN-YD--DAPKLLKLYQEKL  276 (286)
Q Consensus       200 g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~~~~l~~~l~~se~~F~~~~~~-~~--~~~~l~~~y~~~~  276 (286)
                      |++.++|++||++|+||+|+||+|||.   +|+++|+   .++ +.+++.+||++|+++|+. |.  +..+..-.+.+..
T Consensus       387 g~~~~~Iv~fP~~LsySLEkRI~PR~~---~L~~kGl---~~s-L~~~L~~sd~~F~~r~v~~y~e~~~~~~~~~~~~~~  459 (487)
T PLN03196        387 KRPLKELVEFPAYFTYGLESRIKPRYE---RVAKKGI---KCS-LAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKL  459 (487)
T ss_pred             CCCHHHHHhChHHhccChhhhhHHHHH---HHHHcCC---CCC-HHHHhccCHHHHHHHHhhhcccccccCCCcccCCcc
Confidence            999999999999999999999999995   5789999   467 999999999999999999 97  3444333333433

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.4e-46  Score=344.18  Aligned_cols=255  Identities=34%  Similarity=0.547  Sum_probs=200.7

Q ss_pred             CCceeecCcc-cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccC
Q 048223            1 IPKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHD   79 (286)
Q Consensus         1 ~P~lL~~~~~-~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s   79 (286)
                      ||.+|.++++ ++.|+++||.++|++.++++++++++|.++..++++++.|.++||+++|++++++.+++.++|++|..+
T Consensus        21 ~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~  100 (345)
T PF02536_consen   21 YPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFS  100 (345)
T ss_dssp             H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS-
T ss_pred             CCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccc
Confidence            5999999999 999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchhhhhHHHHHHhcCCCchhHhhhhccC----------------------------------CeeEEec-chhHHHHHH
Q 048223           80 ADYYLLPNVKILRDSGVPESDIIKSIESW----------------------------------PKLFLRH-PKFFEKNVA  124 (286)
Q Consensus        80 ~e~~l~~~v~~L~~~G~~~~~i~~~i~~~----------------------------------P~ll~~~-~~~l~~~v~  124 (286)
                      .+.++.+++.+|+++|++.+.+.+++..+                                  |+++..+ .+.++++++
T Consensus       101 ~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~  180 (345)
T PF02536_consen  101 VEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVE  180 (345)
T ss_dssp             --HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHH
T ss_pred             hHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHH
Confidence            87789999999999999988666554444                                  4333333 345888888


Q ss_pred             HHHHcCCCCcch--HHHHHHHHHhc--------------------------------CCHHHHHHHHHHHHHcCCCHHHH
Q 048223          125 SVKEMGINPLRL--KFVLAIQAKCI--------------------------------MSESQWESKLHVYKKWGWSEQEW  170 (286)
Q Consensus       125 ~l~~lG~~~~~~--~~~~~~~~l~~--------------------------------~~~~~l~~~v~~l~~lG~s~~~i  170 (286)
                      +|+++|++.++.  .+.+.|..+..                                .+.+++.++++||+++||+.+|+
T Consensus       181 ~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei  260 (345)
T PF02536_consen  181 FLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEI  260 (345)
T ss_dssp             HHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HHHH
T ss_pred             HHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHH
Confidence            888888887653  23333333322                                23568999999999999999999


Q ss_pred             HHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCCCCcccccccccc
Q 048223          171 LAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSY  250 (286)
Q Consensus       171 ~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~~~~l~~~l~~  250 (286)
                      .+|+.++|++|++|.+++++|++||.++||++.++|+++|++|+||+|+||+|||+++++|+++|. ...++ +.+++.+
T Consensus       261 ~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~s-l~~~l~~  338 (345)
T PF02536_consen  261 AKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPS-LSSMLSC  338 (345)
T ss_dssp             HHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGG-S-HHHHH
T ss_pred             HHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCC-HHHHhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999997 55788 9999999


Q ss_pred             ChhhHHH
Q 048223          251 PEKTFML  257 (286)
Q Consensus       251 se~~F~~  257 (286)
                      ||++|++
T Consensus       339 s~~~F~~  345 (345)
T PF02536_consen  339 SDEEFLK  345 (345)
T ss_dssp             HHHHHT-
T ss_pred             cHHHhcC
Confidence            9999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.1e-41  Score=321.94  Aligned_cols=256  Identities=16%  Similarity=0.236  Sum_probs=215.8

Q ss_pred             CCceeecCcc-cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccC
Q 048223            1 IPKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHD   79 (286)
Q Consensus         1 ~P~lL~~~~~-~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s   79 (286)
                      ||++|+++++ ++.|+++||+++|++.++|++++.++|.+|..++++++.|+++||+++|+++++|++++.++|++|+++
T Consensus       112 ~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~  191 (487)
T PLN03196        112 YPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFK  191 (487)
T ss_pred             CcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCC
Confidence            7999999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhcCCCchhHhhhhccCCeeEEecchh-HHHHHHHHHHcCCCCcch--HHHHHHHHHhcCCHHHHHHH
Q 048223           80 ADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKF-FEKNVASVKEMGINPLRL--KFVLAIQAKCIMSESQWESK  156 (286)
Q Consensus        80 ~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~-l~~~v~~l~~lG~~~~~~--~~~~~~~~l~~~~~~~l~~~  156 (286)
                      +++++.|+++||+++|++++++.+++.++|++|+++.++ +.++++||+++|++.+..  .+.+.|+++++..+++++++
T Consensus       192 ~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~  271 (487)
T PLN03196        192 LEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPN  271 (487)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHH
Confidence            999999999999999999999999999999999999875 999999999999998763  45556777766555677777


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCc-------------------------------------cccccHHHHHHHHHHHHhhc
Q 048223          157 LHVYKKWGWSEQEWLAAFLKCPW-------------------------------------CMITSEDKITAIMDFFVNGM  199 (286)
Q Consensus       157 v~~l~~lG~s~~~i~~~i~~~P~-------------------------------------il~~s~~~l~~k~~fl~~~~  199 (286)
                      +++++++|++.+++..++.++|.                                     ++++|.++|++|++||.+ +
T Consensus       272 v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~-~  350 (487)
T PLN03196        272 VECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRG-R  350 (487)
T ss_pred             HHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHH-c
Confidence            77777777666666665555554                                     444555566778888876 8


Q ss_pred             CCChHHH----hhCCCceecCCCCccchHHHHHHHHHH-CCCCCCCccccccccccC-hhhHHHHhcC
Q 048223          200 GWEPAVI----AKHPALTTFSMEKRIIPRGAVIQFLLS-KGLVKSDTTYLTTLLSYP-EKTFMLRLMN  261 (286)
Q Consensus       200 g~~~~~i----~~~P~~L~~Sle~~i~pR~~vl~~L~~-~G~~~~~~~~l~~~l~~s-e~~F~~~~~~  261 (286)
                      ||+.++|    .++|++|+||.+ +|+++.   +||.+ +|+..+++...|+++++| |+|..+||..
T Consensus       351 Gls~edI~~mv~k~P~lL~~S~~-~l~~k~---dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~  414 (487)
T PLN03196        351 GFSAQDVAKMVVRCPQILALNLE-IMKPSL---EFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYER  414 (487)
T ss_pred             CCCHHHHHHHHHhCCceeeccHH-HHHHHH---HHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHH
Confidence            8888877    588888888885 788874   56654 677654443378888888 7888888854

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.97  E-value=4.9e-33  Score=254.64  Aligned_cols=240  Identities=24%  Similarity=0.448  Sum_probs=189.4

Q ss_pred             HHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHHHhcCC
Q 048223           17 EFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGV   96 (286)
Q Consensus        17 ~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L~~~G~   96 (286)
                      ++|++.|++.++|.+++.++|.++.++.++++.|+++||.++|++..++++++.+||.+|..++++++.|+++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CchhHhhhhccCCeeEEecch-hHHHHHHHHHHcCCCCcch-H-----------------------------------HH
Q 048223           97 PESDIIKSIESWPKLFLRHPK-FFEKNVASVKEMGINPLRL-K-----------------------------------FV  139 (286)
Q Consensus        97 ~~~~i~~~i~~~P~ll~~~~~-~l~~~v~~l~~lG~~~~~~-~-----------------------------------~~  139 (286)
                      +++++.+++.++|++|+.+.+ .+.+++.+|+++|++++.. .                                   ..
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi~  161 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVIA  161 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCHH
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhccccc
Confidence            999999999999999988755 5999999999999987621 0                                   11


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHhhcCCccccccHH---------------------------------
Q 048223          140 LAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSED---------------------------------  186 (286)
Q Consensus       140 ~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~---------------------------------  186 (286)
                      .+|+.+...+++.|+++++||+++|++.+++.+++.++|+++++|.+                                 
T Consensus       162 ~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~  241 (345)
T PF02536_consen  162 KNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEE  241 (345)
T ss_dssp             HHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHH
T ss_pred             ccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchH
Confidence            22445566677889999999999999999999999999998888865                                 


Q ss_pred             HHHHHHHHHHhhcCCChHHH----hhCCCceecCCCCccchHHHHHHHHHH-CCCCCCCccccccccccC-hhhHHHHhc
Q 048223          187 KITAIMDFFVNGMGWEPAVI----AKHPALTTFSMEKRIIPRGAVIQFLLS-KGLVKSDTTYLTTLLSYP-EKTFMLRLM  260 (286)
Q Consensus       187 ~l~~k~~fl~~~~g~~~~~i----~~~P~~L~~Sle~~i~pR~~vl~~L~~-~G~~~~~~~~l~~~l~~s-e~~F~~~~~  260 (286)
                      +++++++||.+ +|++.++|    .++|++|++|.++ ++|+.   +||.+ .|+..+++...|+++++| |++..+||.
T Consensus       242 ~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~---~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~  316 (345)
T PF02536_consen  242 KLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKF---EFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYE  316 (345)
T ss_dssp             HHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHH---HHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHH---HHHHHHhCcCHHHHhhCCceeEechhhhhhhHHH
Confidence            48999999999 99999987    5899999999995 99985   67754 788755544489999999 899999954


Q ss_pred             C
Q 048223          261 N  261 (286)
Q Consensus       261 ~  261 (286)
                      .
T Consensus       317 ~  317 (345)
T PF02536_consen  317 V  317 (345)
T ss_dssp             H
T ss_pred             H
Confidence            4

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.89  E-value=1e-22  Score=190.58  Aligned_cols=212  Identities=19%  Similarity=0.235  Sum_probs=185.7

Q ss_pred             cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHH
Q 048223           11 TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKI   90 (286)
Q Consensus        11 ~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~   90 (286)
                      .+. .++++.++|....++...+.++|.......  .+...+.++...|+.+..  +++.++|.++.++.++.+++++++
T Consensus       198 ~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~  272 (413)
T KOG1267|consen  198 SVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEV  272 (413)
T ss_pred             ccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHH
Confidence            344 788888888888888888888888776643  666777788888876666  788888999999999999999999


Q ss_pred             HHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Q 048223           91 LRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEW  170 (286)
Q Consensus        91 L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i  170 (286)
                      |+++|++.++|..++.++|++|+++.+++...++++.+.  .++   ..+.|+.+ +.++..+.++++++..+|++..|+
T Consensus       273 l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~--~~~---~~k~p~~l-~~s~~~l~~~ie~l~~~g~~~~q~  346 (413)
T KOG1267|consen  273 LKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN--PKH---ILKFPQLL-RSSEDKLKPRIEFLLSLGFSDVQI  346 (413)
T ss_pred             HHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc--chh---hhhhhhhh-hccchhhhhhHHHHHHcCCcHHHH
Confidence            999999999999999999999999999988888888766  322   55556666 679999999999999999999999


Q ss_pred             HHHhhcCCccccccHH-HHHHHHHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHH
Q 048223          171 LAAFLKCPWCMITSED-KITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLS  233 (286)
Q Consensus       171 ~~~i~~~P~il~~s~~-~l~~k~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~  233 (286)
                      ..|+.++|+++.+|.+ .++.+.+|+.+.|+++.++++.+|.+++|++|+|+.||+.+...+..
T Consensus       347 ~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~  410 (413)
T KOG1267|consen  347 LEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGV  410 (413)
T ss_pred             HHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhc
Confidence            9999999999999988 89999999999999999999999999999999999999987766544

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.87  E-value=2.5e-22  Score=187.96  Aligned_cols=225  Identities=27%  Similarity=0.350  Sum_probs=167.3

Q ss_pred             CCceeecCcc-cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhh--cCchHHHHHHHhCCcccc
Q 048223            1 IPKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLL--HSSEKTIALIIRFPYILY   77 (286)
Q Consensus         1 ~P~lL~~~~~-~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g--~~~~~i~~ii~~~P~iL~   77 (286)
                      +|.+|.++.+ .+.|+..+|.+.|++.++++++++.-|.+++.+.+.++.+.++|+.+++  .....+.+.....|....
T Consensus       115 ~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~  194 (413)
T KOG1267|consen  115 SPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLL  194 (413)
T ss_pred             CchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccc
Confidence            3667777777 7777777777777777777777777777776665567777777777764  455555555554443222


Q ss_pred             cCcchhhhhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048223           78 HDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKL  157 (286)
Q Consensus        78 ~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v  157 (286)
                      ..  ..+. ++++++++|..+.++...+..+|..+.... .+...+.++.++|+++.+.++++++.++.+.++++++++|
T Consensus       195 ~~--~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv  270 (413)
T KOG1267|consen  195 NE--NSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKV  270 (413)
T ss_pred             cc--cccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHH
Confidence            22  1244 777888888888888888888888887654 7888899999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCC
Q 048223          158 HVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLV  237 (286)
Q Consensus       158 ~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~  237 (286)
                      ++|+++||+.+|++.|+.++|+++++|.+++..+++|+.+.    .+++.++|+++.+|.. .+.+|+   +++...|+.
T Consensus       271 ~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~----~~~~~k~p~~l~~s~~-~l~~~i---e~l~~~g~~  342 (413)
T KOG1267|consen  271 EVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN----PKHILKFPQLLRSSED-KLKPRI---EFLLSLGFS  342 (413)
T ss_pred             HHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc----chhhhhhhhhhhccch-hhhhhH---HHHHHcCCc
Confidence            99999999999999999999999999999766666666664    2226666666655554 566663   555555554

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.51  E-value=8.5e-05  Score=42.45  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=26.0

Q ss_pred             HHhhcCCccccccHHHHHHHHHHHHhhcCCC
Q 048223          172 AAFLKCPWCMITSEDKITAIMDFFVNGMGWE  202 (286)
Q Consensus       172 ~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~  202 (286)
                      .++.++|+++++|.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4678899999999889999999999 49875

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.39  E-value=0.00013  Score=41.64  Aligned_cols=30  Identities=30%  Similarity=0.554  Sum_probs=19.4

Q ss_pred             HHHHhCCcccccCcchhhhhHHHHHHhcCCC
Q 048223           67 ALIIRFPYILYHDADYYLLPNVKILRDSGVP   97 (286)
Q Consensus        67 ~ii~~~P~iL~~s~e~~l~~~v~~L~~~G~~   97 (286)
                      +++.++|.+|+++ +++++++++||+++|++
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGFS   31 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCCC
Confidence            4566677777777 44577777777766653

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=91.39  E-value=0.82  Score=37.65  Aligned_cols=114  Identities=18%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             hHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHHHh----cCCCchhHhhhhccCCeeEEecchhHHHHHHH
Q 048223           50 PTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRD----SGVPESDIIKSIESWPKLFLRHPKFFEKNVAS  125 (286)
Q Consensus        50 ~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L~~----~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~  125 (286)
                      ..+..|+++|++-++|..++.....    +....+...++.+..    +--....+..++...+..-....-+....++.
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~----~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~~~~~~V~~~~w~~l  124 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGD----DATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLLKEQRLVTKEKWVAI  124 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHHH
Confidence            4566788899999999888775432    111123333333322    11112233333332222211111124556666


Q ss_pred             HHHcCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHH
Q 048223          126 VKEMGINPLRL-KFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAA  173 (286)
Q Consensus       126 l~~lG~~~~~~-~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~  173 (286)
                      ++.+|+++.+. .....   |-...+   ..-.+||.++|++.+++..|
T Consensus       125 ~~~~g~~~~~m~~wh~~---fe~~~p---~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         125 LKAAGMDEADMRRWHIE---FEKMEP---EAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHcCCChHHHHHHHHH---HHHhCc---HHHHHHHHHcCCCHHHHHHH
Confidence            77888877651 11111   111111   23458999999999998765

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=89.77  E-value=1.2  Score=36.65  Aligned_cols=116  Identities=15%  Similarity=0.129  Sum_probs=65.8

Q ss_pred             HHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHh----hhcCchHHHHHHHhCCcccccCcchhhhhHHH
Q 048223           14 RKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSH----LLHSSEKTIALIIRFPYILYHDADYYLLPNVK   89 (286)
Q Consensus        14 ~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~----~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~   89 (286)
                      ..|.+|++.|++-++|..++.....-    ....+..+++.+..    +--..+.+..++...+..-.... -+....++
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~~----~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~~~~~~-V~~~~w~~  123 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGDD----ATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLLKEQRL-VTKEKWVA  123 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-CCHHHHHH
Confidence            57888999999999999998765431    11123333333322    11123344444443333321121 12566788


Q ss_pred             HHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHH
Q 048223           90 ILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVL  140 (286)
Q Consensus        90 ~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~  140 (286)
                      .++..|++++++.+.=..+    -  ...=..=.+||..+|++++.+.-++
T Consensus       124 l~~~~g~~~~~m~~wh~~f----e--~~~p~~h~~~l~~~g~~~~~~~~ir  168 (172)
T cd04790         124 ILKAAGMDEADMRRWHIEF----E--KMEPEAHQEFLQSLGIPEDEIERIR  168 (172)
T ss_pred             HHHHcCCChHHHHHHHHHH----H--HhCcHHHHHHHHHcCCCHHHHHHHH
Confidence            8889999998876542211    0  0112344689999999887654433

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=86.00  E-value=19  Score=32.93  Aligned_cols=198  Identities=16%  Similarity=0.232  Sum_probs=106.5

Q ss_pred             HhhCCCChhhHHHHHhhCCCceecccc-C------cchhHHHHhHh--hhc---CchHHHHHHHhCCcccccCcchhh-h
Q 048223           19 FHCEGISNPDTVKILSKYPGLLSRSLD-N------HLIPTFNSLSH--LLH---SSEKTIALIIRFPYILYHDADYYL-L   85 (286)
Q Consensus        19 L~~~G~~~~~i~~i~~~~P~il~~~~~-~------~l~~~~~~L~~--~g~---~~~~i~~ii~~~P~iL~~s~e~~l-~   85 (286)
                      -..+|+....+.+++.+||.++..... .      .+.|...-|.+  ..+   ...++..-+.|   +|-++.++.| -
T Consensus        44 ~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~K---LLMMS~~~rlpL  120 (335)
T PF11955_consen   44 RRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRK---LLMMSKDRRLPL  120 (335)
T ss_pred             HHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHH---HhccCCCCcccH
Confidence            335899778999999999999875431 1      33344433321  111   22333344444   5655554433 3


Q ss_pred             hHHHHHH-hcCCCchhHhhhhccCCeeEEecc---h-hHHHHHHHHHHcCCCCcc------------------hHHHHHH
Q 048223           86 PNVKILR-DSGVPESDIIKSIESWPKLFLRHP---K-FFEKNVASVKEMGINPLR------------------LKFVLAI  142 (286)
Q Consensus        86 ~~v~~L~-~~G~~~~~i~~~i~~~P~ll~~~~---~-~l~~~v~~l~~lG~~~~~------------------~~~~~~~  142 (286)
                      ..+..++ ++|++.+-...++.++|..|....   + ..-+.+.|=.++.++.-.                  ..|...+
T Consensus       121 ~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~f  200 (335)
T PF11955_consen  121 SKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSF  200 (335)
T ss_pred             HHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecC
Confidence            4677777 599999989999999999887632   0 111112221122221110                  0011000


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc----------CCCH---HHHHHHhhcCCccccccHH--HHHHHHHHHHhhcCCChH---
Q 048223          143 QAKCIMSESQWESKLHVYKKW----------GWSE---QEWLAAFLKCPWCMITSED--KITAIMDFFVNGMGWEPA---  204 (286)
Q Consensus       143 ~~l~~~~~~~l~~~v~~l~~l----------G~s~---~~i~~~i~~~P~il~~s~~--~l~~k~~fl~~~~g~~~~---  204 (286)
                      +. .+.......+.++-++++          |++.   +.=.+.+.-.=-+|++..+  ....++..|.+++|++..   
T Consensus       201 p~-G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~  279 (335)
T PF11955_consen  201 PK-GFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRR  279 (335)
T ss_pred             CC-CccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHH
Confidence            00 111234555555555522          2221   1111122212235666544  477889999999999964   


Q ss_pred             HHhhCCCceecCCCCc
Q 048223          205 VIAKHPALTTFSMEKR  220 (286)
Q Consensus       205 ~i~~~P~~L~~Sle~~  220 (286)
                      -+.++|.+|..|....
T Consensus       280 ~l~rHPgIFYvS~kg~  295 (335)
T PF11955_consen  280 LLLRHPGIFYVSLKGK  295 (335)
T ss_pred             HHHhCCCeEEEeccCC
Confidence            4679999999997743

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes

Probab=85.53  E-value=1  Score=35.56  Aligned_cols=49  Identities=18%  Similarity=0.180  Sum_probs=33.7

Q ss_pred             chhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHhhcCCccc
Q 048223          116 PKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCM  181 (286)
Q Consensus       116 ~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~i~~~P~il  181 (286)
                      ++.++..+.||++=-+.                 ...+..|++||++-|++.+||...+.+.+.--
T Consensus         3 e~li~~A~~FL~~p~V~-----------------~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~   51 (136)
T PF04695_consen    3 EDLIEQAVKFLQDPKVR-----------------NSPLEKKIAFLESKGLTEEEIDEALGRAGSPP   51 (136)
T ss_dssp             HHHHHHHHHHHCTTTCC-----------------CS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred             HHHHHHHHHHhCCcccc-----------------cCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence            34577778888653332                 23477899999999999999999998877644

Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	7e-44
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	9e-12
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-29

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  149 bits (378), Expect = 7e-44
 Identities = 44/265 (16%), Positives = 85/265 (32%), Gaps = 9/265 (3%)

Query: 14  RKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFP 73
             L+     G+      K       LL    +  +      L  +     +  A + +  
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 74  YILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVA---SVKEMG 130
            I   D +  L   V  L      ++D+ + +   P L     +  +  +       E+ 
Sbjct: 67  AIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELS 125

Query: 131 INPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITA 190
           +   R   V   +      E   E+      + G+   E      + P  +  ++ K+T 
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTE 185

Query: 191 IMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTY--LTTLL 248
             DF  N M     +I K P +    +  ++  R   + +L       +   Y  L  L+
Sbjct: 186 TFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLV 244

Query: 249 SYPEKTFMLRL--MNYDDAPKLLKL 271
           S P++ F   +   +  D  K LK 
Sbjct: 245 SIPDEIFCEEIAKASVQDFEKFLKT 269

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 62.9 bits (153), Expect = 9e-12
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 1/133 (0%)

Query: 2   PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHS 61
             +     E L  ++ + H +  S  D  +++ K P LL+ S++            L  S
Sbjct: 66  HAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELS 125

Query: 62  SEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEK 121
            +KT  L++R P +L    +           + G   ++I   I   PK+   +     +
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTE 185

Query: 122 NVA-SVKEMGINP 133
                   M I  
Sbjct: 186 TFDFVHNVMSIPH 198

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  112 bits (282), Expect = 3e-29
 Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 22/276 (7%)

Query: 2   PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHS 61
           P V             F   +G S      I+S+YP  ++R+ + +L   ++    ++ S
Sbjct: 41  PGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTS 99

Query: 62  SEKTIALIIRFPYILYH-DADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFE 120
             + + ++ R P   +  + +  L  N+K L   G+    + + + + P+ F       +
Sbjct: 100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNK 159

Query: 121 KNVASVKEMGINPLRLKFVLAIQAKC-------IMSESQWESKL-HVYKKWGWSEQEWLA 172
           + V  ++  G++         ++          I S  + ++ +  +   +  + +E L 
Sbjct: 160 QMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLV 219

Query: 173 AFLK-CPWCMITSEDKITAIMDFFVN---GMGWEP----AVIAKHPALTTFSMEKRIIPR 224
                    +  S D               +G         +  +P +   + EK+   +
Sbjct: 220 LICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDK 278

Query: 225 GAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLM 260
              I  L+ + +  S       +L     T   R+ 
Sbjct: 279 ---IDCLMEENISISQIIENPRVLDSSISTLKSRIK 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	99.98
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.98
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.88
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.4
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.24
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	91.25
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	87.5
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	86.41
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	85.95
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	85.49
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	84.76
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	81.78

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.6e-48  Score=344.28  Aligned_cols=250  Identities=16%  Similarity=0.178  Sum_probs=230.5

Q ss_pred             cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHH
Q 048223           11 TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKI   90 (286)
Q Consensus        11 ~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~   90 (286)
                      |-.++++||.++|++.+++.+....+|.++++++++++.|+++||.++|+++++|++++.++|.+|.+++++ ++|+++|
T Consensus         4 ~~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~   82 (270)
T 3m66_A            4 DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAY   82 (270)
T ss_dssp             HHHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHH
Confidence            446899999999999999988877778889999999999999999999999999999999999999999998 9999999


Q ss_pred             HHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHH-HHcCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC
Q 048223           91 LRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASV-KEMGINPLRL--KFVLAIQAKCIMSESQWESKLHVY-KKWGWS  166 (286)
Q Consensus        91 L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l-~~lG~~~~~~--~~~~~~~~l~~~~~~~l~~~v~~l-~~lG~s  166 (286)
                      |+++|++.++|.+++.++|++|+.+.++++++++|| +++|++++..  ++.+.|.++. .+.++++++++++ +++||+
T Consensus        83 L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~-~s~e~~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           83 LHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT-GSLEPVKENMKVYRLELGFK  161 (270)
T ss_dssp             HHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT-SCSHHHHHHHHHHHHTSCCC
T ss_pred             HHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee-echHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999 5899998764  3444566665 4778899999976 699999


Q ss_pred             HHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCCCC---ccc
Q 048223          167 EQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD---TTY  243 (286)
Q Consensus       167 ~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~---~~~  243 (286)
                      .+|+..|+.++|+++++|.+++++|++||.++||++.++|+++|++|+||+| ||+|||.++++|.++|+...+   ++ 
T Consensus       162 ~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~-  239 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS-  239 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC-
T ss_pred             HHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC-
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999998654   45 


Q ss_pred             cccccccChhhHHHHhcC-CCC
Q 048223          244 LTTLLSYPEKTFMLRLMN-YDD  264 (286)
Q Consensus       244 l~~~l~~se~~F~~~~~~-~~~  264 (286)
                      +.+++.+||++|+++|++ +.+
T Consensus       240 L~~~l~~sd~~F~~~~~~~~~e  261 (270)
T 3m66_A          240 LDKLVSIPDEIFCEEIAKASVQ  261 (270)
T ss_dssp             HHHHHHSCHHHHHHHTTCSCHH
T ss_pred             HHHHhcCCHHHHHHHHhcCCHH
Confidence            777999999999999999 763

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=2.3e-46  Score=341.04  Aligned_cols=251  Identities=18%  Similarity=0.239  Sum_probs=201.0

Q ss_pred             CCceeecCcccHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcc-cccC
Q 048223            1 IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYI-LYHD   79 (286)
Q Consensus         1 ~P~lL~~~~~~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~i-L~~s   79 (286)
                      +|+++..++++..++++||+++|++.+++++++.++|.+|+++.+ ++.|+++||+++|++++++++++.++|.+ ++.+
T Consensus        40 ~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~  118 (343)
T 3mva_O           40 QPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSN  118 (343)
T ss_dssp             CGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCC
T ss_pred             CchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCC
Confidence            477888888888888888888888888888888888888888854 78888888888888888888888888884 4444


Q ss_pred             cchhhhhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCC-----cc-h--HHHHHHHHHhc----
Q 048223           80 ADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINP-----LR-L--KFVLAIQAKCI----  147 (286)
Q Consensus        80 ~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~-----~~-~--~~~~~~~~l~~----  147 (286)
                      .+++++|+++||+++|++.++|.+++.++|++++.+.+++++++++++++|++.     .. .  ++.+.|.++..    
T Consensus       119 ~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~  198 (343)
T 3mva_O          119 NNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKR  198 (343)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHH
T ss_pred             hHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHH
Confidence            434688888888888888888888888888888888877788888887766531     11 1  11122333322    


Q ss_pred             --------------------------------CCHHHHHHHHHHHH----HcCCCHHHHHHHhhcCCccccccHHHHHHH
Q 048223          148 --------------------------------MSESQWESKLHVYK----KWGWSEQEWLAAFLKCPWCMITSEDKITAI  191 (286)
Q Consensus       148 --------------------------------~~~~~l~~~v~~l~----~lG~s~~~i~~~i~~~P~il~~s~~~l~~k  191 (286)
                                                      .+.+.++++++++.    ++||+.+|+..|+.++|+++++|.+++++|
T Consensus       199 i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k  278 (343)
T 3mva_O          199 VKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDK  278 (343)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHH
Confidence                                            23344555554444    589999999999999999999999999999


Q ss_pred             HHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCCCCccccc--cccccChhhHHHHhcC
Q 048223          192 MDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLT--TLLSYPEKTFMLRLMN  261 (286)
Q Consensus       192 ~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~~~~l~--~~l~~se~~F~~~~~~  261 (286)
                      ++||.+ ||++.++|+++|++|+||+| ||+|||   ++|+++|+   +++ ++  +++++||++|.++|..
T Consensus       279 ~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~---~~L~~~g~---~~~-~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          279 IDCLME-ENISISQIIENPRVLDSSIS-TLKSRI---KELVNAGC---NLS-TLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             HHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHH---HHHHTTTC---CSS-SSCGGGGGSCHHHHHHHHHH
T ss_pred             HHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHH---HHHHHCCC---CCC-CCcchhhcCCHHHHHHHHhc
Confidence            999999 99999999999999999999 999998   78999998   344 55  9999999999999864

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=3e-38  Score=284.26  Aligned_cols=208  Identities=18%  Similarity=0.216  Sum_probs=185.7

Q ss_pred             cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHH
Q 048223           11 TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKI   90 (286)
Q Consensus        11 ~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~   90 (286)
                      ++++.+++|.++||++++|+++++.+|.++..    ++.+++.||..+|++.++|.++|.++|++|++++++ |+++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHH
Confidence            57888999999999999999999999999864    677999999999999999999999999999999975 9999999


Q ss_pred             HHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHH
Q 048223           91 LRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYK-KWGWSEQE  169 (286)
Q Consensus        91 L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~-~lG~s~~~  169 (286)
                      |+++|++.+++.+++.++|++|+++.++                                  +..++.+|. ++||+.++
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~----------------------------------i~~~v~~L~~~lGfS~~e  165 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD----------------------------------INDTVRLLKEKCLFTVQQ  165 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHHH----------------------------------HHHHHHHHHHTSCCCHHH
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChHH----------------------------------HHHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999876544                                  444555664 79999999


Q ss_pred             HHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCC----------C
Q 048223          170 WLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVK----------S  239 (286)
Q Consensus       170 i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~----------~  239 (286)
                      +..|+.++|+||++|.++|++|++||+++||+++++|++ |++|+||++ ||+|||.+   |+..|...          .
T Consensus       166 v~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~f---L~~lG~~q~~~~k~~~~~~  240 (335)
T 4fp9_B          166 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIY---LERLGRYQTPDKKGQTQIP  240 (335)
T ss_dssp             HHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHH---HHHHTSCCCCCSSSCCSSC
T ss_pred             HHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHH---HHHcCCccCCCcccccCCC
Confidence            999999999999999999999999999999999999998 999999999 99999965   55555531          2


Q ss_pred             CccccccccccChhhHHHHhcC-CC
Q 048223          240 DTTYLTTLLSYPEKTFMLRLMN-YD  263 (286)
Q Consensus       240 ~~~~l~~~l~~se~~F~~~~~~-~~  263 (286)
                      .++ +.+++..||++|+.++.+ ..
T Consensus       241 nps-L~~il~~sd~~F~~~vA~~s~  264 (335)
T 4fp9_B          241 NPL-LKDILRVSEAEFLARTACTSV  264 (335)
T ss_dssp             CCC-HHHHTTSCHHHHHHHTSCCCH
T ss_pred             Ccc-HHHHHcCCHHHHHHHHHhcCH
Confidence            356 899999999999999987 55

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=99.98  E-value=9.7e-33  Score=251.18  Aligned_cols=240  Identities=16%  Similarity=0.184  Sum_probs=198.0

Q ss_pred             HHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHH
Q 048223           12 LLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKIL   91 (286)
Q Consensus        12 l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L   91 (286)
                      -..+++||.++|++.+   .+++++|.++..+.+ +..++++||+++|+++++|++++.++|.+|.++++ ++.|+++||
T Consensus        19 ~~~~v~~L~s~Gl~~~---~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL   93 (343)
T 3mva_O           19 NEDLLKNLLTMGVDID---MARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLW   93 (343)
T ss_dssp             -CCHHHHHHHHTCCHH---HHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCHH---HHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHH
Confidence            4568999999999954   567789999988875 88999999999999999999999999999999976 599999999


Q ss_pred             HhcCCCchhHhhhhccCCe-eEEecch-hHHHHHHHHHHcCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 048223           92 RDSGVPESDIIKSIESWPK-LFLRHPK-FFEKNVASVKEMGINPLRL--KFVLAIQAKCIMSESQWESKLHVYKKWGWS-  166 (286)
Q Consensus        92 ~~~G~~~~~i~~~i~~~P~-ll~~~~~-~l~~~v~~l~~lG~~~~~~--~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s-  166 (286)
                      +++|++++++.+++.++|+ +++...+ ++.++++||+++|++.+..  .+..+|+++.+ +.+..++++++++++|++ 
T Consensus        94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~-~~e~~~~~v~~L~~lgv~~  172 (343)
T 3mva_O           94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN-SLDLNKQMVEFLQAAGLSL  172 (343)
T ss_dssp             TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTS-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhhee-CHHHhhHHHHHHHHhCCCc
Confidence            9999999999999999999 5666664 6999999999999998764  34555777765 566668999999866653 


Q ss_pred             -----HHHHHHHhhcCCccccccHHHHHHHHHHHHh----------------------------------------hcCC
Q 048223          167 -----EQEWLAAFLKCPWCMITSEDKITAIMDFFVN----------------------------------------GMGW  201 (286)
Q Consensus       167 -----~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~----------------------------------------~~g~  201 (286)
                           .+.|.+|+.++|.++++|.++++++++||.+                                        ++|+
T Consensus       173 g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~  252 (343)
T 3mva_O          173 GHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC  252 (343)
T ss_dssp             TCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred             CCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence                 6788889999999988888788888888885                                        4677


Q ss_pred             ChHHH----hhCCCceecCCCCccchHHHHHHHHHHCCCCCCCccccccccccChhhHHHHhcC
Q 048223          202 EPAVI----AKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMN  261 (286)
Q Consensus       202 ~~~~i----~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~~~~l~~~l~~se~~F~~~~~~  261 (286)
                      +.+++    .++|++|++|.+ +|+++.   +||.++|+..+++...|+++.+|-++..+||..
T Consensus       253 s~~ev~~~v~~~P~il~~s~~-~l~~k~---~fl~~mg~~~~~i~~~P~~l~~sleri~~R~~~  312 (343)
T 3mva_O          253 TEEEVQKFVLSYPDVIFLAEK-KFNDKI---DCLMEENISISQIIENPRVLDSSISTLKSRIKE  312 (343)
T ss_dssp             CHHHHHHHHHTCGGGGGSCHH-HHHHHH---HHHHTTTCCHHHHHHSGGGGGSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCchhcccHH-HHHHHH---HHHHHcCCCHHHHHhCCHHHhcCHHHHHHHHHH
Confidence            76665    588888888888 488874   677778887555444788888885588877743

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.98  E-value=9e-33  Score=243.52  Aligned_cols=189  Identities=15%  Similarity=0.169  Sum_probs=174.5

Q ss_pred             CceeecCcc-cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCc
Q 048223            2 PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDA   80 (286)
Q Consensus         2 P~lL~~~~~-~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~   80 (286)
                      |.+|.++++ ++.|+++||.++|++.++|++++.++|.++++++++ +.|+++||+++|++++++++++.++|++|++|+
T Consensus        30 p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~  108 (270)
T 3m66_A           30 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV  108 (270)
T ss_dssp             HHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCH
T ss_pred             hhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCH
Confidence            566999999 999999999999999999999999999999999996 999999999999999999999999999999999


Q ss_pred             chhhhhHHHHH-HhcCCCchhHhhhhccCCeeEEecchhHHHHHHHH-HHcCCCCcch--HHHHHHHHHhcCCHHHHHHH
Q 048223           81 DYYLLPNVKIL-RDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASV-KEMGINPLRL--KFVLAIQAKCIMSESQWESK  156 (286)
Q Consensus        81 e~~l~~~v~~L-~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l-~~lG~~~~~~--~~~~~~~~l~~~~~~~l~~~  156 (286)
                      ++ ++++++|| +++|++.+++.+++.++|++++.+.++++++++++ +++|++.+..  ++.++|+++. .+.++++++
T Consensus       109 ~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~-~s~~~l~~k  186 (270)
T 3m66_A          109 ER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT-ANKMKLTET  186 (270)
T ss_dssp             HH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGT-SCHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhe-ecHHHHHHH
Confidence            86 99999999 57999999999999999999999999999999975 7899998864  4555677665 577999999


Q ss_pred             HHHHH-HcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223          157 LHVYK-KWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN  197 (286)
Q Consensus       157 v~~l~-~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~  197 (286)
                      ++|+. ++|++.++|.    ++|++|++|.++++++..|+..
T Consensus       187 ~~fL~~~mg~~~~~i~----~~P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          187 FDFVHNVMSIPHHIIV----KFPQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             HHHHHTTSCCCHHHHH----HCGGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHH----hCchHhhCCHHHHHHHHHHHHH
Confidence            99995 7999998764    7999999998899999999987

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=182.07  Aligned_cols=156  Identities=18%  Similarity=0.176  Sum_probs=138.1

Q ss_pred             CCceeecCcccHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCc
Q 048223            1 IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDA   80 (286)
Q Consensus         1 ~P~lL~~~~~~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~   80 (286)
                      +|.++   ..++.+++.||.++|++.++|++++.++|.+|+.+++ +|.|+++||+++|++.+++++++.++|.+|+++.
T Consensus        70 ~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~  145 (335)
T 4fp9_B           70 RRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ  145 (335)
T ss_dssp             CSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCH
T ss_pred             Ccccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHHHcCCCHHHHHHHHHhCchhhccCh
Confidence            46665   2378899999999999999999999999999999996 8999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHH-hcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048223           81 DYYLLPNVKILR-DSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHV  159 (286)
Q Consensus        81 e~~l~~~v~~L~-~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~  159 (286)
                      +. +..++.+|. ++|++.++|.+++.++|.+|+.+                                  .++++++++|
T Consensus       146 e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S----------------------------------~e~L~~K~ef  190 (335)
T 4fp9_B          146 QD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED----------------------------------LGQLEYKFQY  190 (335)
T ss_dssp             HH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC----------------------------------HHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC----------------------------------HHHHHHHHHH
Confidence            86 999999986 59999999999999999999875                                  4456666777


Q ss_pred             HH-HcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCC
Q 048223          160 YK-KWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGW  201 (286)
Q Consensus       160 l~-~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~  201 (286)
                      |. ++|++.++|.    + |++|+||.++|+++..||.. +|.
T Consensus       191 Lv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          191 AYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             HHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             HHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence            75 7888888875    2 88999998899999999998 886

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.40  E-value=2.4e-12  Score=100.00  Aligned_cols=177  Identities=16%  Similarity=0.215  Sum_probs=143.0

Q ss_pred             cchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHH
Q 048223           47 HLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASV  126 (286)
Q Consensus        47 ~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l  126 (286)
                      .+...+.-+.-+|+.++-+.-++.+.|.+|....-. ++.+-.||+.+|+.+..+.+++.-||.+|++....+..     
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdind-----  105 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDIND-----  105 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHH-----
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhH-----
Confidence            444555555567899999999999999999998865 88899999999999999999999999999876544444     


Q ss_pred             HHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHH
Q 048223          127 KEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYK-KWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAV  205 (286)
Q Consensus       127 ~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~-~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~  205 (286)
                                                   .+..++ .+=|+..++.+++..||+++.-+...++-|++|-.-.||+.+-+
T Consensus       106 -----------------------------tvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpd  156 (239)
T 4fzv_B          106 -----------------------------TVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPD  156 (239)
T ss_dssp             -----------------------------HHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHH
T ss_pred             -----------------------------HHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcc
Confidence                                         444444 46689999999999999999988889999999998889999999


Q ss_pred             HhhCCCceecCCCCccchHHHHHHHHHHCCCCC-------CCccccccccccChhhHHHHhcC
Q 048223          206 IAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVK-------SDTTYLTTLLSYPEKTFMLRLMN  261 (286)
Q Consensus       206 i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~-------~~~~~l~~~l~~se~~F~~~~~~  261 (286)
                      |++. .+|.||+. +|+.||-+++.|-+-.-+.       +++- +.+++..||.+|..+-..
T Consensus       157 ivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpl-lkdilrvseaeflartac  216 (239)
T 4fzv_B          157 IVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL-LKDILRVSEAEFLARTAC  216 (239)
T ss_dssp             HHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCC-HHHHHTSCHHHHHHHTSC
T ss_pred             hhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChH-HHHHHHHhHHHHHHHHhc
Confidence            9885 79999999 7999997766664321111       1233 688999999999988776

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.24  E-value=3e-06  Score=65.83  Aligned_cols=108  Identities=17%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             HHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHHHh-
Q 048223           15 KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRD-   93 (286)
Q Consensus        15 ~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L~~-   93 (286)
                      .+.-+--+|+.++-+.-++.+.|+++...+. .+..+-.||+.+|+-...+.+++--||.++++.-.+ +..++..|++ 
T Consensus        36 iisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrllkek  113 (239)
T 4fzv_B           36 IISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEK  113 (239)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHHHHHh
Confidence            4445556899999999999999999998875 888899999999999999999999999999999765 9999999998 


Q ss_pred             cCCCchhHhhhhccCCeeEEecchhHHHHHH
Q 048223           94 SGVPESDIIKSIESWPKLFLRHPKFFEKNVA  124 (286)
Q Consensus        94 ~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~  124 (286)
                      +-++-.++-+++.+||.++.-+...++-++.
T Consensus       114 clftvqqvtkilhscpsvlredlgqleykfq  144 (239)
T 4fzv_B          114 CLFTVQQVTKILHSCPSVLREDLGQLEYKFQ  144 (239)
T ss_dssp             SCCCHHHHHHHHHHCGGGGTSCTTHHHHHHH
T ss_pred             HHhhHHHHHHHHHhCcHHHHHHHhhhhhhHh
Confidence            8899999999999999999766555554443

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=91.25  E-value=0.34  Score=30.84  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             hhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 048223          117 KFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLK  176 (286)
Q Consensus       117 ~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~i~~  176 (286)
                      +.+...+.||++=.+.                 ...+..+++||++-|++.+||..++.+
T Consensus        11 ~li~~Av~FL~dp~V~-----------------~sp~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           11 PLIATAVKFLQNSRVR-----------------QSPLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHHHHHHHHHCTTGG-----------------GSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCChhhh-----------------cCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            4477777777653322                 233678999999999999999998875

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=87.50  E-value=0.61  Score=29.64  Aligned_cols=25  Identities=12%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             cHHHHHHHHhhCCCChhhHHHHHhh
Q 048223           11 TLLRKLEFFHCEGISNPDTVKILSK   35 (286)
Q Consensus        11 ~l~~~l~fL~~~G~~~~~i~~i~~~   35 (286)
                      .+..+++||++.|++.++|...+.+
T Consensus        29 p~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           29 PLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            4678999999999999999888765

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=86.41  E-value=0.65  Score=41.76  Aligned_cols=39  Identities=15%  Similarity=0.006  Sum_probs=29.9

Q ss_pred             cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHh
Q 048223           11 TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSH   57 (286)
Q Consensus        11 ~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~   57 (286)
                      .....|+.|.++||+++++.+.+...-        ++...-++||.+
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~  205 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT  205 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence            477889999999999999999887542        355566777753

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=85.95  E-value=4.7  Score=29.91  Aligned_cols=96  Identities=8%  Similarity=-0.006  Sum_probs=63.5

Q ss_pred             HHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHh------hhcCchHHHHHHHhCCcccccCcch--hh
Q 048223           13 LRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSH------LLHSSEKTIALIIRFPYILYHDADY--YL   84 (286)
Q Consensus        13 ~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~------~g~~~~~i~~ii~~~P~iL~~s~e~--~l   84 (286)
                      +..++-|.++||+...+.+.+.+.-        ++....++||..      -|.++.++...+..+.    .+..+  .-
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~----~~~~~~~~~   76 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQ----CSEEKMMEF   76 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCS----SCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhcc----CCccccccC
Confidence            3467788999999999888876542        145566777653      4566667766666532    12111  12


Q ss_pred             hhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHH
Q 048223           85 LPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVK  127 (286)
Q Consensus        85 ~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~  127 (286)
                      ...+.-|.++||+.+.+.+.+..+       .+.+...++||.
T Consensus        77 ~~~v~~L~eMGF~~~~a~~AL~~~-------~nd~erAlewL~  112 (118)
T 4ae4_A           77 LQLMSKFKEMGFELKDIKEVLLLH-------NNDQDNALEDLM  112 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHT-------TTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHH
Confidence            245788888999999998887643       345777777764

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=85.49  E-value=1  Score=30.13  Aligned_cols=45  Identities=18%  Similarity=0.243  Sum_probs=33.3

Q ss_pred             chhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 048223          116 PKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKC  177 (286)
Q Consensus       116 ~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~i~~~  177 (286)
                      ++.+...+.||++=-+.                 ...+..|++||++-|++.+||..++.+.
T Consensus        15 e~li~~Av~FLqdp~V~-----------------~sp~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           15 EPLIATAVKFLQNSRVR-----------------QSPLATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             HHHHHHHHHHHCSTTGG-----------------GSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChhhh-----------------hCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            44577777777642222                 2336789999999999999999998874

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=84.76  E-value=2  Score=32.02  Aligned_cols=99  Identities=14%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             hhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHH------HcCCCCcchHHHHHHHHHhcCCHH---HHHH
Q 048223           85 LPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVK------EMGINPLRLKFVLAIQAKCIMSES---QWES  155 (286)
Q Consensus        85 ~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~------~lG~~~~~~~~~~~~~~l~~~~~~---~l~~  155 (286)
                      +..+..|.++|++...+.+.+..+-      . ..+..++||.      +.|+++...  -.++. ....+..   ...+
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g------~-~~e~amewL~~h~~L~d~~~d~~~~--e~~l~-~~~~~~~~~~~~~~   78 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG------A-NIEQILDYLFAHGQLCEKGFDPLLV--EEALE-MHQCSEEKMMEFLQ   78 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC------S-CHHHHHHHHHHHHHHHHTTCCHHHH--HHHHH-HCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC------c-CHHHHHHHHHHhchhcccCCChhhh--HHHHH-hccCCccccccCHH
Confidence            3567778888888888888776531      1 4555566653      345544221  11111 1111221   1345


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcC
Q 048223          156 KLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMG  200 (286)
Q Consensus       156 ~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g  200 (286)
                      .|.-|.++||+.+++...++.+       ...+.+-+|+|....|
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~-------~nd~erAlewL~~~~~  116 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLH-------NNDQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHT-------TTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHhcc
Confidence            7888889999999888876543       3456666777765443

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=81.78  E-value=1.4  Score=29.47  Aligned_cols=26  Identities=12%  Similarity=0.291  Sum_probs=22.6

Q ss_pred             cHHHHHHHHhhCCCChhhHHHHHhhC
Q 048223           11 TLLRKLEFFHCEGISNPDTVKILSKY   36 (286)
Q Consensus        11 ~l~~~l~fL~~~G~~~~~i~~i~~~~   36 (286)
                      .+..+++||++.|++.++|...+.+.
T Consensus        34 p~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           34 PLATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            46789999999999999999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00