Citrus Sinensis ID: 048227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccccccccccHHHcHHccccHHHccEEEccccccccccccccHHHHHcccccEEEEcccccccccccHHHHccccccEEEccccccc
Coil and Loop (DISEMBL)
MSLISIIALMTEMHGYKACLETERTALLELKSFfvsvsdigydheilrswggddegmssdccddwegvkcsaTTRRVMQLSLnkttkfndsnynlfyggpsasllnmslfypfeelqnldlsgnrfeglyenktydsfgslkqlkilnlgdnrfnDSILRYLNTLTSLTTLILRFNNIE
Flexible Loop (DISEMBL)
MSLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSlnkttkfndsnYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTltslttlilrfnnie
Low Complexity Region (SEG)
MSLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIlrylntltslttlilRFNNIE
Disordered region (IsUnstruct)
**LISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN***
Disordered Region (DISOPRED)
MSLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI*
Disordered Region (DISEMBL)
MSLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE
Disordered Region (DISPRO)
MSLISIIALMTEMHGYKACLETERTALLELKSFFVSVSD***DHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF*NI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	no	no	0.793	0.135	0.291	2e-07
Q6R2K1	699	Protein STRUBBELIG-RECEPT	no	no	0.631	0.161	0.302	7e-05
Q9FL63	614	Inactive leucine-rich rep	no	no	0.547	0.159	0.336	0.0001
Q00874	372	DNA-damage-repair/tolerat	no	no	0.826	0.397	0.248	0.0001
Q9C9H7	847	Receptor-like protein 12	no	no	0.731	0.154	0.296	0.0002
Q3UHC2	2014	Leucine-rich repeat serin	yes	no	0.391	0.034	0.314	0.0003
Q9C8M9	719	Protein STRUBBELIG-RECEPT	no	no	0.592	0.147	0.323	0.0003
Q93Y06	669	Probable inactive recepto	no	no	0.614	0.164	0.341	0.0004
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.625	0.109	0.293	0.0008
Q9SH71	587	Putative inactive recepto	no	no	0.614	0.187	0.301	0.0008

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 26/168 (15%)

Query: 14  HGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMS--SDCCDDWEGVKCS 71
           HG  A  ETE  +LLE   F   + D      I  SW  D   ++  S C +DW G+ C 
Sbjct: 17  HGANAVTETELRSLLE---FRKGIRDETSHQRI--SWS-DTSSLTDPSTCPNDWPGISCD 70

Query: 72  ATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYE 131
             T  ++ ++L++     +  ++   G                 L+NL LSGN F G   
Sbjct: 71  PETGSIIAINLDRRGLSGELKFSTLSG--------------LTRLRNLSLSGNSFSG--- 113

Query: 132 NKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            +   S G +  L+ L+L DN F   I   ++ L SL  L L  N  E
Sbjct: 114 -RVVPSLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFE 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 60/149 (40%), Gaps = 36/149 (24%)

Query: 47  LRSW---GGDDEGMSSDCCDDWEGVKCSATTRRVMQLS--------------LNKTTKFN 89
           L+ W   GGD       C D WEGVKC  ++   +QLS              L   T F+
Sbjct: 45  LKGWKANGGDP------CEDSWEGVKCKGSSVTELQLSGFELGGSRGYLLSNLKSLTTFD 98

Query: 90  DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL 149
            S  NL    P     N++         NLD S N  +G   N  Y S   +K L+ +NL
Sbjct: 99  LSKNNLKGNIPYQLPPNIA---------NLDFSENELDG---NVPY-SLSQMKNLQSINL 145

Query: 150 GDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           G N+ N  +      L+ L TL    N +
Sbjct: 146 GQNKLNGELPDMFQKLSKLETLDFSLNKL 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL63|Y5410_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana GN=At5g24100 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 51/125 (40%), Gaps = 27/125 (21%)

Query: 58  SSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNM---SLFYPFE 114
           SS  C  W GV C     RV  L L                 P ASLL +          
Sbjct: 55  SSPVCTTWPGVTCDIDGTRVTALHL-----------------PGASLLGVIPPGTISRLS 97

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLIL- 173
           ELQ L L  N   G +       F  LK+LK ++LG+NRF+  +     T T+LT L L 
Sbjct: 98  ELQILSLRSNGLRGPFP----IDFLQLKKLKAISLGNNRFSGPLPSDYATWTNLTVLDLY 153

Query: 174 --RFN 176
             RFN
Sbjct: 154 SNRFN 158

Arabidopsis thaliana (taxid: 3702)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 37/185 (20%)

Query: 17  KACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRR 76
           + C   ++TAL   KS   S  ++G    I  +W  +     +DCC +W G+ C   + R
Sbjct: 25  RCCSPKDQTALNAFKSSL-SEPNLG----IFNTWSEN-----TDCCKEWYGISCDPDSGR 74

Query: 77  VMQLSLNKTTK---FNDSNYNLFYGG---PSASLLNM-----------------SLFYPF 113
           V  +SL   ++   F  +  + +  G   P+   L                         
Sbjct: 75  VTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSL 134

Query: 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLIL 173
             L+ LDL+GN+  G    +     G L +L +LNL +N+ +  I   L +L  L  L L
Sbjct: 135 ASLRILDLAGNKITG----EIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLEL 190

Query: 174 RFNNI 178
             N I
Sbjct: 191 TENGI 195

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 34/165 (20%)

Query: 19  CLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVM 78
           C + +R ALLE +  F     I     I+  W G     S+DCC  W GV C+  + +V+
Sbjct: 34  CRDDQRDALLEFRGEF----PINASWHIMNQWRGP-WNKSTDCCL-WNGVTCNDKSGQVI 87

Query: 79  QLS-----LNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENK 133
            L      LN   K N S + L Y                  L++LDL+     G    +
Sbjct: 88  SLDIPNTFLNNYLKTNSSLFKLQY------------------LRHLDLTNCNLYG----E 125

Query: 134 TYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
              S G+L  L ++NL  N+F   I   +  L  L  LIL  NN+
Sbjct: 126 IPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILA-NNV 169

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3UHC2|LRRK1_MOUSE Leucine-rich repeat serine/threonine-protein kinase 1 OS=Mus musculus GN=Lrrk1 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 42/70 (60%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F    +LQ L  S N  E L+E +   ++  L++L+ L+L DNR  +  ++++++  SLT
Sbjct: 348 FLHLSKLQKLTASKNYLERLFEEENATNWIGLRKLQELDLADNRLTELPVQFMHSFKSLT 407

Query: 170 TLILRFNNIE 179
           +L +  NN++
Sbjct: 408 SLNVSRNNLK 417

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 24/130 (18%)

Query: 61  CCDDWEGVKCSATTRRVMQLS------------LNKTTKFNDSNYNLFYGGPSASLLNMS 108
           C  +W GV CS +    ++LS            L+K T   + +        S++ L   
Sbjct: 59  CGQNWRGVTCSGSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDL-------SSNNLGGD 111

Query: 109 LFYPFEE-LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           L Y F   LQ L+L+ N+F G     +Y S   +  LK LNLG N+F   I    + L S
Sbjct: 112 LPYQFPPNLQRLNLANNQFTGA---ASY-SLSQITPLKYLNLGHNQFKGQIAIDFSKLDS 167

Query: 168 LTTLILRFNN 177
           LTTL   FN+
Sbjct: 168 LTTLDFSFNS 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Y06|Y5720_ARATH Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 16/126 (12%)

Query: 60  DCCDDWEGVKCSATTRRVMQLSLNKTT---KFNDSNYNLFYGGPSASLLNMSLFYPFEEL 116
           D C  W GVKC+    R+++L L+       F+ +  +        SL N SLF P  +L
Sbjct: 60  DYCQ-WRGVKCAQG--RIVRLVLSGVGLRGYFSSATLSRLDQLRVLSLENNSLFGPIPDL 116

Query: 117 QNLD------LSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTT 170
            +L       LS N+F G +      S  SL +L IL++  N F+ SI   +N L  LT+
Sbjct: 117 SHLVNLKSLFLSRNQFSGAFP----PSILSLHRLMILSISHNNFSGSIPSEINALDRLTS 172

Query: 171 LILRFN 176
           L L FN
Sbjct: 173 LNLDFN 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 38/150 (25%)

Query: 53  DDEGMSSDCCDDWEGVKCSATTR----------RVMQLSLNK---TTKFNDS-------- 91
           +    SS+CCD W G+ C ++            RV++L L +   + K ++S        
Sbjct: 55  ESSSFSSNCCD-WVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKLDQLK 113

Query: 92  ----NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKIL 147
                +N   G  +ASLLN+S       L+ LDLS N F GL+      S  +L  L++L
Sbjct: 114 VLNLTHNSLSGSIAASLLNLS------NLEVLDLSSNDFSGLFP-----SLINLPSLRVL 162

Query: 148 NLGDNRFNDSILRYL-NTLTSLTTLILRFN 176
           N+ +N F+  I   L N L  +  + L  N
Sbjct: 163 NVYENSFHGLIPASLCNNLPRIREIDLAMN 192

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 55/136 (40%), Gaps = 26/136 (19%)

Query: 58  SSDCCDDWEGVKCSATTRRVMQLSLNK----------------TTKFNDSNYNLFYGGPS 101
           SSD C  W GV C+    R++ + L                  + KF     N F G   
Sbjct: 46  SSDVCHSWTGVTCNENGDRIVSVRLPAVGFNGLIPPFTISRLSSLKFLSLRKNHFTGDFP 105

Query: 102 ASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY 161
           +   N+      + L +L L  N   G         F  LK LK+L+L +N FN SI   
Sbjct: 106 SDFTNL------KSLTHLYLQHNHLSG----PLLAIFSELKNLKVLDLSNNGFNGSIPTS 155

Query: 162 LNTLTSLTTLILRFNN 177
           L+ LTSL  L L  N+
Sbjct: 156 LSGLTSLQVLNLANNS 171

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
240256417	908	receptor like protein 56 [Arabidopsis th	0.854	0.168	0.447	7e-27
10177158	888	disease resistance protein-like [Arabido	0.854	0.172	0.447	8e-27
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.921	0.154	0.417	1e-26
297745031	869	unnamed protein product [Vitis vinifera]	0.949	0.195	0.436	1e-26
240254367	976	receptor like protein 14 [Arabidopsis th	0.888	0.162	0.430	6e-24
297842171	966	leucine-rich repeat family protein [Arab	0.877	0.162	0.394	6e-24
359482735	1097	PREDICTED: receptor-like protein 12-like	0.927	0.151	0.420	6e-24
12323813	951	disease resistance protein, putative; 63	0.888	0.167	0.430	6e-24
359483099	1231	PREDICTED: probable LRR receptor-like se	0.899	0.130	0.415	2e-23
4432858	910	putative disease resistance protein [Ara	0.860	0.169	0.397	3e-23

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 106/172 (61%), Gaps = 19/172 (11%)

Query: 9   LMTEMHGYKACLETERTALLELKSFFVS-VSDIGYDHEILRSWGGDDEGMSSDCCDDWEG 67
           L+  +HG+ +C+E ER ALLELK F +S   +  YD  +L +W  D +   SDCC  WE 
Sbjct: 3   LLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYD-SVLPTWTNDTK---SDCCQ-WEN 57

Query: 68  VKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE 127
           +KC+ T+RR+  LSL          Y  +Y     SLLN+SL +PFEE+++LDLS +R  
Sbjct: 58  IKCNRTSRRLTGLSL----------YTSYYL--EISLLNLSLLHPFEEVRSLDLSNSRLN 105

Query: 128 GLYEN-KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           GL ++ + Y S   L+ L+ILN   N FN+SI  +LN  TSLTTL LR NN+
Sbjct: 106 GLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNM 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 106/172 (61%), Gaps = 19/172 (11%)

Query: 9   LMTEMHGYKACLETERTALLELKSFFVS-VSDIGYDHEILRSWGGDDEGMSSDCCDDWEG 67
           L+  +HG+ +C+E ER ALLELK F +S   +  YD  +L +W  D +   SDCC  WE 
Sbjct: 3   LLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYD-SVLPTWTNDTK---SDCCQ-WEN 57

Query: 68  VKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE 127
           +KC+ T+RR+  LSL          Y  +Y     SLLN+SL +PFEE+++LDLS +R  
Sbjct: 58  IKCNRTSRRLTGLSL----------YTSYYL--EISLLNLSLLHPFEEVRSLDLSNSRLN 105

Query: 128 GLYEN-KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           GL ++ + Y S   L+ L+ILN   N FN+SI  +LN  TSLTTL LR NN+
Sbjct: 106 GLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNM 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 109/175 (62%), Gaps = 10/175 (5%)

Query: 7   IALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHE--ILRSWGGDDEGMSSDCCDD 64
           I L+ ++ G K C+E E+  LLE K+F      +  +H   +L SW  ++   +S+CC+ 
Sbjct: 14  ILLLVQICGCKGCIEEEKMGLLEFKAFL----KLNNEHADFLLPSWIDNN---TSECCN- 65

Query: 65  WEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGN 124
           WE V C+ TT RV +L  N  T+ +  +   +Y      LLN+SLF PFEEL +L+LS N
Sbjct: 66  WERVICNPTTGRVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSAN 125

Query: 125 RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            F+G  EN+ + S   LK+L+ILNL DN+FN +I++ L+ LTSL TL++ +N IE
Sbjct: 126 SFDGFIENEGFKSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIE 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 106/181 (58%), Gaps = 11/181 (6%)

Query: 2   SLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDC 61
           S I  + ++ ++HGYK CLE ER  LLE K F  S ++      +L SW  D+E   SDC
Sbjct: 8   SWIWALMILIQIHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDEE---SDC 62

Query: 62  CDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYG-GPSAS--LLNMSLFYPFEELQN 118
           C  WE V C++TT  V QLSLN   +     Y+  YG  P      LN+SLF+PFEEL +
Sbjct: 63  CY-WERVVCNSTTGTVTQLSLNNIRQI--EFYHRVYGLAPPKKTWFLNVSLFHPFEELVS 119

Query: 119 LDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           LDLS N F    E++ ++    LK+L++LN+G N FN+SI   +  LTSL  LILR   +
Sbjct: 120 LDLSENWFADSLEDQGFEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKL 179

Query: 179 E 179
           E
Sbjct: 180 E 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 118/181 (65%), Gaps = 22/181 (12%)

Query: 3   LISIIALMTEMHGYKACLETERTALLELKSFFVS-VSDIGYDHEILRSWGGDDEGMSSDC 61
           LI ++ L+ ++ GYK C+E ER ALLELK + +S  +D G D  +L +W  D +   S+C
Sbjct: 11  LIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLD-SVLPTWTNDTK---SNC 66

Query: 62  CDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDL 121
           C  WEG+KC+ T+ R+++LS+ +T      N+        +SLLN+SL +PFEEL++L+L
Sbjct: 67  CR-WEGLKCNQTSGRIIELSIGQT------NFK------ESSLLNLSLLHPFEELRSLNL 113

Query: 122 SG---NRFEGLYEN-KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177
           SG   N F GL+++ + Y+S   L+ L+IL+L  N FN+SI  +LN  TSLTTL ++ N 
Sbjct: 114 SGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNY 173

Query: 178 I 178
           I
Sbjct: 174 I 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 114/180 (63%), Gaps = 23/180 (12%)

Query: 3   LISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCC 62
           LI ++ LM ++HGYK+C++ ER AL EL+ + +S ++      +L +W  D    +SDCC
Sbjct: 11  LIWVMLLMGQLHGYKSCIDKERNALFELRKYMISRTEEDQSDSVLPTWTND---TTSDCC 67

Query: 63  DDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPS---ASLLNMSLFYPFEELQNL 119
             W+GV C+  + RV +++               +GG S    SLLN+SL +PFE++++L
Sbjct: 68  R-WKGVACNRVSGRVTEIA---------------FGGLSLKDNSLLNLSLLHPFEDVRSL 111

Query: 120 DLSGNRFEGLYEN-KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           +LS +RF GL+++ + Y S   L++L+IL+L  N+FN+SI  +L+  TSLTTL LR NN+
Sbjct: 112 NLSSSRFSGLFDDVEGYKSLRRLRKLEILDLSSNKFNNSIFHFLSAATSLTTLFLRSNNM 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 10/176 (5%)

Query: 7   IALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWE 66
           I L+ ++   K C+E E+  LLE K+F + ++D   D  +L SW  ++   +S+CC+ WE
Sbjct: 14  ILLLVQICECKGCIEEEKMGLLEFKAF-LKLNDEHADF-LLPSWLDNN---TSECCN-WE 67

Query: 67  GVKCSATTRRVMQLSLN---KTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSG 123
            V C+ TT +V +L LN   +   F + N+  +Y      LLN+SLF PFEEL +L+LS 
Sbjct: 68  RVICNPTTGQVKKLFLNDIRQQQNFLEDNW-YYYENAKFWLLNVSLFLPFEELHHLNLSA 126

Query: 124 NRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
           N F+G  EN+ + S   LK+L+ILNLG N FN +I++ L+ LTSL TL++  N IE
Sbjct: 127 NSFDGFIENEGFKSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYIE 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 118/181 (65%), Gaps = 22/181 (12%)

Query: 3   LISIIALMTEMHGYKACLETERTALLELKSFFVS-VSDIGYDHEILRSWGGDDEGMSSDC 61
           LI ++ L+ ++ GYK C+E ER ALLELK + +S  +D G D  +L +W  D +   S+C
Sbjct: 11  LIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLD-SVLPTWTNDTK---SNC 66

Query: 62  CDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDL 121
           C  WEG+KC+ T+ R+++LS+ +T      N+        +SLLN+SL +PFEEL++L+L
Sbjct: 67  CR-WEGLKCNQTSGRIIELSIGQT------NFK------ESSLLNLSLLHPFEELRSLNL 113

Query: 122 SG---NRFEGLYEN-KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177
           SG   N F GL+++ + Y+S   L+ L+IL+L  N FN+SI  +LN  TSLTTL ++ N 
Sbjct: 114 SGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNY 173

Query: 178 I 178
           I
Sbjct: 174 I 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 10/171 (5%)

Query: 7   IALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWE 66
           I L+ ++ G K C+E E+  LLE K+F + ++D G+   +L SW  ++    SDCC+ WE
Sbjct: 14  ILLLVQICGCKGCIEEEKMGLLEFKAF-LKLND-GHADFLLPSWIDNN---ISDCCN-WE 67

Query: 67  GVKCSATTRRVMQLSLN---KTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSG 123
            V C+ TT RV +LSLN   +     + N+  +Y      LLN+SLF PFEEL +L+LS 
Sbjct: 68  RVICNPTTGRVKKLSLNDIRQQQNMLEVNW-YYYENVKFWLLNVSLFLPFEELHHLNLSA 126

Query: 124 NRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
           N F+G  EN+ +    SLK+L+IL++  N F+ S L+ L  +TSL TL +R
Sbjct: 127 NSFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIR 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 111/176 (63%), Gaps = 22/176 (12%)

Query: 9   LMTEMHGYKACLETERTALLELKSFFVSVS-DIGYDHEILRSWGGDDEGMSSDCCDDWEG 67
           L+ ++HG  +C+E ER ALLELK + +S S + G D+ +L +W  D +   SDCC  W+G
Sbjct: 3   LLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDY-VLPTWTNDTK---SDCCQ-WDG 57

Query: 68  VKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSG---N 124
           +KC+ T+ RV++LS+           ++++    +S LN+SL +PFEE+++L+LS    N
Sbjct: 58  IKCNRTSGRVIELSVG----------DMYFK--ESSPLNLSLLHPFEEVRSLNLSTEGYN 105

Query: 125 RFEGLYEN-KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            F G +++ + Y S   L+ LKI++L  N FN S   +LN  TSLTTLIL +N ++
Sbjct: 106 EFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMD 161

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.782	0.143	0.425	2.6e-25
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.860	0.169	0.385	6.7e-23
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.737	0.141	0.389	1.1e-19
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.659	0.122	0.333	3.9e-13
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.508	0.102	0.396	4.4e-10
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.664	0.109	0.369	5.7e-10
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.418	0.075	0.365	2.4e-07
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.731	0.136	0.348	2.9e-07
TAIR|locus:2182260	371	AT5G12940 [Arabidopsis thalian	0.888	0.428	0.275	4.2e-07
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.692	0.142	0.326	4.2e-07

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.6e-25, P = 2.6e-25
 Identities = 69/162 (42%), Positives = 106/162 (65%)

Query:     2 SLISIIALMTEMHGYKACLETERTALLELKSFFVS-VSDIGYDHEILRSWGGDDEGMSSD 60
             +LI ++ L+ ++ GYK C+E ER ALLELK + +S  +D G D  +L +W  D +   S+
Sbjct:    10 NLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLD-SVLPTWTNDTK---SN 65

Query:    61 CCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLD 120
             CC  WEG+KC+ T+ R+++LS+ +T  F +S           SLLN+SL +PFEEL++L+
Sbjct:    66 CCR-WEGLKCNQTSGRIIELSIGQTN-FKES-----------SLLNLSLLHPFEELRSLN 112

Query:   121 LSG---NRFEGLYEN-KTYDSFGSLKQLKILNLGDNRFNDSI 158
             LSG   N F GL+++ + Y+S   L+ L+IL+L  N FN+SI
Sbjct:   113 LSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSI 154

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.7e-23, P = 6.7e-23
 Identities = 66/171 (38%), Positives = 94/171 (54%)

Query:     9 LMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGV 68
             L+  +HG+ +C+E ER ALLELK F +S  +      +L +W  D +   SDCC  WE +
Sbjct:     3 LLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENI 58

Query:    69 KCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEG 128
             KC+ T+RR+  LSL          Y  +Y     SLLN+SL +PFEE+++LDLS +R  G
Sbjct:    59 KCNRTSRRLTGLSL----------YTSYY--LEISLLNLSLLHPFEEVRSLDLSNSRLNG 106

Query:   129 LYEN-KTYDSFGSLKQLKILNLGDNRFNDSIXXXXXXXXXXXXXXXRFNNI 178
             L ++ + Y S   L+ L+ILN   N FN+SI               R NN+
Sbjct:   107 LVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNM 157

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 60/154 (38%), Positives = 97/154 (62%)

Query:     9 LMTEMHGYKACLETERTALLELKSFFVSVS-DIGYDHEILRSWGGDDEGMSSDCCDDWEG 67
             L+ ++HG  +C+E ER ALLELK + +S S + G D+ +L +W  D +   SDCC  W+G
Sbjct:     3 LLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDY-VLPTWTNDTK---SDCCQ-WDG 57

Query:    68 VKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLS--G-N 124
             +KC+ T+ RV++LS+           ++++    +S LN+SL +PFEE+++L+LS  G N
Sbjct:    58 IKCNRTSGRVIELSVG----------DMYF--KESSPLNLSLLHPFEEVRSLNLSTEGYN 105

Query:   125 RFEGLYEN-KTYDSFGSLKQLKILNLGDNRFNDS 157
              F G +++ + Y S   L+ LKI++L  N FN S
Sbjct:   106 EFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYS 139

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 45/135 (33%), Positives = 75/135 (55%)

Query:    46 ILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLL 105
             +L +W  D    +SDCC  W+GV C+  + RV ++S    +   D+           SLL
Sbjct:    51 VLPTWTNDT---TSDCCR-WKGVACNRVSGRVTEISFGGLS-LKDN-----------SLL 94

Query:   106 NMSLFYPFEELQNLDLSGNRFEGLYEN-KTYDSFGSLKQLKILNLGDNRFNDSIXXXXXX 164
             N+SL +PFE++++L+LS +R  GL+++ + Y S   L++L+IL+L  N+FN+SI      
Sbjct:    95 NLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSA 154

Query:   165 XXXXXXXXXRFNNIE 179
                      R NN++
Sbjct:   155 ATSLTTLFLRSNNMD 169

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 42/106 (39%), Positives = 63/106 (59%)

Query:    57 MSSD--CCDDWEGVKCSATTRRVMQLSLN-KTTKFNDSNYNLFYGGPSASLLNMSLFYPF 113
             MSSD  CC  W  +KC  T++RV+ +SL+ ++ +  D         P   L N++ FYPF
Sbjct:     1 MSSDRSCCH-WRRIKCDITSKRVIGISLSLESIRPPD---------PLPQL-NLTFFYPF 49

Query:   114 EELQNLDLSGNRFEGLY-ENKTYDSFGSLKQLKILNLGDNRFNDSI 158
             EELQ+L+LS   F+G + E K     GSL+ L+ L+LG N ++ S+
Sbjct:    50 EELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSV 95

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 51/138 (36%), Positives = 76/138 (55%)

Query:    27 LLELKSFFVSVSDIGYDHE----ILRSWGGDDEGMSSDCCDDWEGVKCS-ATTRRVMQLS 81
             LL+LKS+  ++ D   + E    IL+SW    EG   DCC  WE VKCS A    V+ LS
Sbjct:     3 LLQLKSYLKNLVDAEEEEEEGLSILKSWT-HHEG---DCCR-WERVKCSDAINGHVIGLS 57

Query:    82 LNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKT-YDSFGS 140
             L++          + +   + SL N+SL + F +LQ+L+LS N F  L ++   + SFG+
Sbjct:    58 LDRLVP-------VAFESQTRSL-NLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGT 109

Query:   141 LKQLKILNLGDNRFNDSI 158
             L +L  L+   N F++SI
Sbjct:   110 LDKLTTLDFSHNMFDNSI 127

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 30/82 (36%), Positives = 48/82 (58%)

Query:   104 LLNMSLFYPFEELQNLDLSGNR------FEGLYEN-KTYDSFGSLKQLKILNLGDNRFND 156
             LLN+SL +PFE++++LDLS +R      F GL+++ + Y S   L+ L+IL+L  +RFN+
Sbjct:    27 LLNLSLLHPFEDVRSLDLSSSRSCEDCGFSGLFDDVEGYKSLSRLRNLEILDLSSHRFNN 86

Query:   157 SIXXXXXXXXXXXXXXXRFNNI 178
             SI                +NN+
Sbjct:    87 SIFPFLNAATSLTTLFLTYNNM 108

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 53/152 (34%), Positives = 75/152 (49%)

Query:    19 CLETERTALLELKSFFVSVSDIGYDH-EI--LRSWGGDDE-GMSSDCCDDWEGVKCSATT 74
             C   +R ALL  K+ F  +     DH +I  + S    D  G +SDCC+ WEGV C+A +
Sbjct:    37 CRPEQRDALLAFKNEF-EIGKPSPDHCKIYGIESPRKTDSWGNNSDCCN-WEGVTCNAKS 94

Query:    75 RRVMQLSLNKTT---KF--NDSNYNL-FYGGPSASLLNMS--LFYPFEELQNL---DLSG 123
               V++L L+ ++   +F  N S  NL F      S  +    +    E L +L   DLS 
Sbjct:    95 GEVIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLSFNDFKGQITSSIENLSHLTYLDLSS 154

Query:   124 NRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155
             N F G   N    S G+L +L  LNL DN+F+
Sbjct:   155 NHFSGQILN----SIGNLSRLTYLNLFDNQFS 182

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182260 AT5G12940 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 55/200 (27%), Positives = 85/200 (42%)

Query:     2 SLISIIALMTEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDC 61
             +++  + L T +H   +CL ++R ALLE ++  ++   IG    +  +W G       DC
Sbjct:    13 NVVVFLLLSTTVH---SCLPSDRAALLEFRAK-LNEPYIG----VFNTWKG------LDC 58

Query:    62 CDDWEGVKCSATTRRVMQLSLNKTTK---FNDSNYN-LFYGGPSASLLNMSLF------- 110
             C  W GV C   TRRV  ++L   ++   F  +  + L  G  S S+  ++         
Sbjct:    59 CKGWYGVSCDPNTRRVAGITLRGESEDPLFQKAKRSGLMTGSISPSICKLTRLSGIIIAD 118

Query:   111 -------YP--FEEL---QNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSI 158
                     P   E L   ++LDL GN+F G+       + G L +LK+LNL DN     I
Sbjct:   119 WKGISGVIPSCIENLPFLRHLDLVGNKFSGVIPA----NIGKLLRLKVLNLADNHLYGVI 174

Query:   159 XXXXXXXXXXXXXXXRFNNI 178
                            R NNI
Sbjct:   175 PPSITRLVSLSHLDLRNNNI 194

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 50/153 (32%), Positives = 71/153 (46%)

Query:    19 CLETERTALLELKSFFVSVSDIGYD--HEILRSWGGDDEGMSSDCCDDWEGVKCSATTRR 76
             C   +R ALLELK  F  +    +D  H    SW  +     SDCC  W+G+ C+  +  
Sbjct:    39 CRLEQRDALLELKKEF-KIKKPCFDGLHPTTESWANN-----SDCCY-WDGITCNDKSGE 91

Query:    77 VMQLSLNKT---TKFNDSNYNLFYGGPSASLLNMSLFY-------P-----FEELQNLDL 121
             V++L L+++   ++F+ SN +LF       L  + L Y       P     F  L  LDL
Sbjct:    92 VLELDLSRSCLQSRFH-SNSSLFTVLNLRFLTTLDLSYNYFSGQIPSCIENFSHLTTLDL 150

Query:   122 SGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154
             S N F G   +    S G+L QL  L+L  N F
Sbjct:   151 SKNYFSGGIPS----SIGNLSQLTFLDLSGNEF 179

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 29/119 (24%)

Query: 65  WEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSL--FYP-----FEELQ 117
           W G  C                +F+ +    F  G    L N  L  F P        LQ
Sbjct: 404 WSGADC----------------QFDSTKGKWFIDG--LGLDNQGLRGFIPNDISKLRHLQ 445

Query: 118 NLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176
           +++LSGN   G        S GS+  L++L+L  N FN SI   L  LTSL  L L  N
Sbjct: 446 SINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L++LDLS NR   + +     +F  L  LK+L+L  N          + L SL +L L  
Sbjct: 2   LKSLDLSNNRLTVIPD----GAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 176 NNI 178
           NN+
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 10/52 (19%)

Query: 20 LETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCS 71
          L  +R ALL  KS              L SW        SD C  W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDP-----SGALSSWNPSS----SDPCS-WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 82  LNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSL 141
           L      N S  N   G    SL +++       L+ LDLS N F G       +S G L
Sbjct: 441 LRHLQSINLSG-NSIRGNIPPSLGSIT------SLEVLDLSYNSFNGSIP----ESLGQL 489

Query: 142 KQLKILNLGDNR 153
             L+ILNL  N 
Sbjct: 490 TSLRILNLNGNS 501

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 89  NDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILN 148
           N SN N     P  S+ N         L+ LDLS N   G    +  +  GS   LK+L+
Sbjct: 124 NLSNNNFTGSIPRGSIPN---------LETLDLSNNMLSG----EIPNDIGSFSSLKVLD 170

Query: 149 LGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           LG N     I   L  LTSL  L L  N +
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLIL 173
           + L+NLDLS N+F G    K     GSL +L  L L +N+ +  I   L++   L +L L
Sbjct: 475 KRLENLDLSRNQFSGAVPRK----LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 174 RFNNI 178
             N +
Sbjct: 531 SHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 5/64 (7%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
            LQ L L+ N+F G       DSFGS K+L+ L+L  N+F+ ++ R L +L+ L  L L 
Sbjct: 453 SLQMLSLARNKFFG----GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 175 FNNI 178
            N +
Sbjct: 508 ENKL 511

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
PLN03150	623	hypothetical protein; Provisional	99.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
PLN03150	623	hypothetical protein; Provisional	99.05
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	99.01
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.57
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.5
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.27
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.25
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.23
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.2
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.18
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.17
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.14
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.08
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.93
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.81
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.44
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.1
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.53
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.74
smart00370	26	LRR Leucine-rich repeats, outliers.	94.74
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.74
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.98
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.0
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.64
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.45
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.49
PRK15386	426	type III secretion protein GogB; Provisional	86.36
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	82.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	80.17

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=8.4e-20  Score=168.07  Aligned_cols=141  Identities=30%  Similarity=0.470  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCCCCCEEEEEcCCCCCCC----------
Q 048227           20 LETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFN----------   89 (179)
Q Consensus        20 ~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~----------   89 (179)
                      .++|+.||++||+++.     +|.+ .+.+|+..     .+|| .|.||+|+. .++|+.|+|+++. +.          
T Consensus        27 ~~~~~~~l~~~~~~~~-----~~~~-~~~~w~~~-----~~~c-~w~gv~c~~-~~~v~~L~L~~~~-i~~~~~~~~~~l   92 (968)
T PLN00113         27 HAEELELLLSFKSSIN-----DPLK-YLSNWNSS-----ADVC-LWQGITCNN-SSRVVSIDLSGKN-ISGKISSAIFRL   92 (968)
T ss_pred             CHHHHHHHHHHHHhCC-----CCcc-cCCCCCCC-----CCCC-cCcceecCC-CCcEEEEEecCCC-ccccCChHHhCC
Confidence            5689999999999997     6764 68899763     6899 999999986 5799999999876 54          


Q ss_pred             ------CCCcCccCCCCCcccc-CCc----------------cCCCCCCCcEEeccCCccCccccCccccccCcccCCCE
Q 048227           90 ------DSNYNLFYGGPSASLL-NMS----------------LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKI  146 (179)
Q Consensus        90 ------~~~~n~~~g~ip~~~~-~~~----------------~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~  146 (179)
                            ++..|.+.|.+|.... ...                ..+.+++|++|+|++|.+++.+|.    .++.+++|++
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN----DIGSFSSLKV  168 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh----HHhcCCCCCE
Confidence                  2456677777765422 000                012344455555555555555554    5555555555


Q ss_pred             EeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          147 LNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       147 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |++++|.+.+.+|..++++++|++|+|++|++
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  200 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL  200 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence            55555555555555555555555555555543

>PLN03150 hypothetical protein; Provisional

Probab=99.77  E-value=2e-18  Score=152.66  Aligned_cols=134  Identities=31%  Similarity=0.390  Sum_probs=108.9

Q ss_pred             ccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCC--C--CCEEEEEcCCCCCCCCC
Q 048227           16 YKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSAT--T--RRVMQLSLNKTTKFNDS   91 (179)
Q Consensus        16 ~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~--~--~~v~~l~L~~~~~l~~~   91 (179)
                      ...+.++|..||+++|+.+.     ++.   ..+|.++..  ....| .|.||.|...  .  .+|+.|+|++++ +.  
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~-----~~~---~~~W~g~~C--~p~~~-~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~--  431 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLG-----LPL---RFGWNGDPC--VPQQH-PWSGADCQFDSTKGKWFIDGLGLDNQG-LR--  431 (623)
T ss_pred             ccccCchHHHHHHHHHHhcC-----Ccc---cCCCCCCCC--CCccc-ccccceeeccCCCCceEEEEEECCCCC-cc--
Confidence            44566789999999999986     443   247976210  00113 6999999531  1  259999999998 87  


Q ss_pred             CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEE
Q 048227           92 NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTL  171 (179)
Q Consensus        92 ~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  171 (179)
                            |.+|..      ++.+++|+.|+|++|+++|.+|.    .++.+++|+.|||++|+++|.+|+.++++++|++|
T Consensus       432 ------g~ip~~------i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        432 ------GFIPND------ISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             ------ccCCHH------HhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence                  888876      78899999999999999999998    89999999999999999999999999999999999


Q ss_pred             eCCCCcCC
Q 048227          172 ILRFNNIE  179 (179)
Q Consensus       172 ~Ls~N~lt  179 (179)
                      +|++|+|+
T Consensus       496 ~Ls~N~l~  503 (623)
T PLN03150        496 NLNGNSLS  503 (623)
T ss_pred             ECcCCccc
Confidence            99999874

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.20  E-value=2.5e-11  Score=112.20  Aligned_cols=66  Identities=27%  Similarity=0.446  Sum_probs=56.5

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|+|++|.++|.+|.    .++.+++|+.|||++|+++|.+|..+.++++|++|++++|+++
T Consensus       519 ~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        519 LSSCKKLVSLDLSHNQLSGQIPA----SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             HcCccCCCEEECCCCcccccCCh----hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            67788888888888888888888    8888888888888888888888888888888888888888763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=2e-11  Score=76.14  Aligned_cols=61  Identities=31%  Similarity=0.453  Sum_probs=54.5

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++|++++|+++...+.    .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999974445    789999999999999999977778999999999999999986

...

>PLN03150 hypothetical protein; Provisional

Probab=99.05  E-value=2.7e-10  Score=101.21  Aligned_cols=84  Identities=27%  Similarity=0.383  Sum_probs=74.4

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .+++.|+|+++. +.        |.+|..      ++.+++|+.|+|++|+++|.+|.    .++.+++|++|+|++|+|
T Consensus       442 ~~L~~L~Ls~N~-l~--------g~iP~~------~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        442 RHLQSINLSGNS-IR--------GNIPPS------LGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             CCCCEEECCCCc-cc--------CcCChH------HhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCEEECcCCcc
Confidence            457778888877 76        888876      88899999999999999999999    999999999999999999


Q ss_pred             CCcChhhhCCC-CCCCEEeCCCCc
Q 048227          155 NDSILRYLNTL-TSLTTLILRFNN  177 (179)
Q Consensus       155 ~g~iP~~l~~l-~~L~~L~Ls~N~  177 (179)
                      +|.+|..++.+ .++..+++.+|.
T Consensus       503 ~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        503 SGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cccCChHHhhccccCceEEecCCc
Confidence            99999998864 467889998885

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=99.01  E-value=6e-10  Score=64.76  Aligned_cols=43  Identities=35%  Similarity=0.699  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeC
Q 048227           20 LETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCS   71 (179)
Q Consensus        20 ~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~   71 (179)
                      +++|++||++||+++.    .+|.+ .+.+|+....   .+|| +|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~----~~~~~-~l~~W~~~~~---~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLN----NDPSG-VLSSWNPSSD---SDPC-SWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-----SC-C-CCTT--TT-----S-CC-CSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcc----cccCc-ccccCCCcCC---CCCe-eeccEEeC
Confidence            3689999999999997    23543 8999998521   5899 99999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.91  E-value=1.1e-10  Score=87.32  Aligned_cols=84  Identities=30%  Similarity=0.483  Sum_probs=72.8

Q ss_pred             CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227           74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR  153 (179)
Q Consensus        74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~  153 (179)
                      ..+++.+.|+++. ++         .+|+.      +..+.+|+.|++++|+++. +|.    +++.+++|++|+++.|+
T Consensus        32 ~s~ITrLtLSHNK-l~---------~vppn------ia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnr   90 (264)
T KOG0617|consen   32 MSNITRLTLSHNK-LT---------VVPPN------IAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNR   90 (264)
T ss_pred             hhhhhhhhcccCc-ee---------ecCCc------HHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhh
Confidence            3578999999998 76         45554      7778899999999999987 788    89999999999999999


Q ss_pred             CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          154 FNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       154 l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +. ..|..||.++.|++|||..|+++
T Consensus        91 l~-~lprgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   91 LN-ILPRGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             hh-cCccccCCCchhhhhhccccccc
Confidence            98 78999999999999999998863

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=1.8e-08  Score=62.72  Aligned_cols=60  Identities=25%  Similarity=0.473  Sum_probs=50.4

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      +++.|+++++. +.         .     +....|..+++|++|++++|+++...|.    .|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~-l~---------~-----i~~~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNK-LT---------E-----IPPDSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSST-ES---------E-----ECTTTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCC-CC---------c-----cCHHHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCcC
Confidence            57788899888 76         2     2334588899999999999999986666    889999999999999985

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.67  E-value=1.3e-08  Score=84.72  Aligned_cols=76  Identities=25%  Similarity=0.307  Sum_probs=61.4

Q ss_pred             cCCCCCccccCCccCCCCCCCcEEeccCCccCccccCc--------------------cccccCcccCCCEEeCcCCCCC
Q 048227           96 FYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENK--------------------TYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus        96 ~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~--------------------~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      +.-.+|.+      ++.+..||.||++.|+|.- +|.-                    ....+.+|++|..|||.+|.+.
T Consensus       446 ~Ln~LP~e------~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  446 LLNDLPEE------MGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             hhhhcchh------hhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence            33566655      7778889999999998864 5430                    0114889999999999999999


Q ss_pred             CcChhhhCCCCCCCEEeCCCCcCC
Q 048227          156 DSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       156 g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                       .||+.+|+|++|++|++++|.|.
T Consensus       519 -~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 -QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -hCChhhccccceeEEEecCCccC
Confidence             89999999999999999999874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=3.8e-08  Score=74.15  Aligned_cols=64  Identities=31%  Similarity=0.421  Sum_probs=23.8

Q ss_pred             CCCCCCCcEEeccCCccCccccCcccccc-CcccCCCEEeCcCCCCCCc-ChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSF-GSLKQLKILNLGDNRFNDS-ILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l-~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..++.|+.|++++|+++. +++    .+ ..+++|++|++++|++... --..+..+++|++|+|.+|.+
T Consensus        60 l~~L~~L~~L~L~~N~I~~-i~~----~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   60 LPGLPRLKTLDLSNNRISS-ISE----GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             ----TT--EEE--SS---S--CH----HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ccChhhhhhcccCCCCCCc-ccc----chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            4556777777777777765 433    33 3467777777777777531 114456677777777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.57  E-value=6.2e-08  Score=56.49  Aligned_cols=37  Identities=32%  Similarity=0.544  Sum_probs=27.6

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      ++|++|++++|+|+. +|+    .+++|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~----~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPP----ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGG----HGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc-cCc----hHhCCCCCCEEEecCCCCC
Confidence            467888888888885 776    6888888888888888887

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.50  E-value=1.2e-07  Score=71.47  Aligned_cols=80  Identities=31%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCC-CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFY-PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~-~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      +.++|+|.++. ++         .|.       .++ .+.+|+.|+|++|.++. ++     .+..+++|+.|++++|++
T Consensus        20 ~~~~L~L~~n~-I~---------~Ie-------~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   20 KLRELNLRGNQ-IS---------TIE-------NLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS--
T ss_pred             ccccccccccc-cc---------ccc-------chhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCC
Confidence            56888999988 76         111       144 47889999999999987 55     578899999999999999


Q ss_pred             CCcChhhh-CCCCCCCEEeCCCCcCC
Q 048227          155 NDSILRYL-NTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~iP~~l-~~l~~L~~L~Ls~N~lt  179 (179)
                      + .+++.+ ..+++|++|+|++|++.
T Consensus        77 ~-~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   77 S-SISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             --S-CHHHHHH-TT--EEE-TTS---
T ss_pred             C-ccccchHHhCCcCCEEECcCCcCC
Confidence            9 465544 46899999999999873

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=1.7e-07  Score=54.59  Aligned_cols=37  Identities=35%  Similarity=0.444  Sum_probs=32.2

Q ss_pred             cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|++|++++|+++ .+|+.+++|++|++|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47999999999999 78888999999999999999985

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.37  E-value=8e-08  Score=83.39  Aligned_cols=65  Identities=29%  Similarity=0.381  Sum_probs=43.0

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +-+|+.|+.|+||+|.+...-+.    .+...++|++|||++|+++---|.+|..+.+|+.|+|++|++
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             ccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence            44567777777777777765565    666667777777777777755555666666666666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.27  E-value=9.6e-08  Score=86.23  Aligned_cols=96  Identities=28%  Similarity=0.426  Sum_probs=59.3

Q ss_pred             CCCCCCccceEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcc----
Q 048227           59 SDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKT----  134 (179)
Q Consensus        59 ~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~----  134 (179)
                      +|-|  |.-..|-   .+++-|+|++|. +.         ++|+     +.+.++..|+.|+||+|+++. +|..-    
T Consensus       372 td~c--~p~l~~~---~hLKVLhLsyNr-L~---------~fpa-----s~~~kle~LeeL~LSGNkL~~-Lp~tva~~~  430 (1081)
T KOG0618|consen  372 TDSC--FPVLVNF---KHLKVLHLSYNR-LN---------SFPA-----SKLRKLEELEELNLSGNKLTT-LPDTVANLG  430 (1081)
T ss_pred             cccc--hhhhccc---cceeeeeecccc-cc---------cCCH-----HHHhchHHhHHHhcccchhhh-hhHHHHhhh
Confidence            3556  7767764   478899999998 74         5554     346778888888999998886 66500    


Q ss_pred             --------------ccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCC
Q 048227          135 --------------YDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       135 --------------~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N  176 (179)
                                    |.++.+++.|+.+|+|.|+++- .+|..... ++|++|||++|
T Consensus       431 ~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN  486 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN  486 (1081)
T ss_pred             hhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence                          1144555555566666665542 23332221 55666666555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.26  E-value=2.3e-07  Score=69.71  Aligned_cols=66  Identities=33%  Similarity=0.437  Sum_probs=50.6

Q ss_pred             ccCCCCCCCcEEeccCCccC-ccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          108 SLFYPFEELQNLDLSGNRFE-GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~-g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ..|+.++.|++|||..|+++ ..+|.    .|-.|..|+-|+|+.|.|. .+|+.++++++|+.|.+..|.+
T Consensus        96 rgfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            34777788888888877775 34666    6666777777777777777 7888899999999998888864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.25  E-value=1.1e-05  Score=73.35  Aligned_cols=40  Identities=15%  Similarity=0.126  Sum_probs=30.0

Q ss_pred             HHhhcccCChHHHHHHHHHHHhhccccccCCCCCcCCCC----CCCCCCCCCCCCC
Q 048227           11 TEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRS----WGGDDEGMSSDCC   62 (179)
Q Consensus        11 ~~~~~~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~----W~~~~~~~s~~~C   62 (179)
                      -+++..+...++|.+.++++.+.+.     .|.  .+.+    |.+.     +++|
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~p~--~~~~~~~~~~~~-----~~fc   95 (754)
T PRK15370         52 YLCHPPETASPEEIKSKFECLRMLA-----FPA--YADNIQYSRGGA-----DQYC   95 (754)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHhc-----CCc--hhhccccccCCC-----Cccc
Confidence            3455667778899999999999997     665  3444    8874     6788

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.23  E-value=2.2e-07  Score=81.50  Aligned_cols=82  Identities=26%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      .++-|||+.++ +.         .+|.+      +..-+++-+|+||+|++.. ||..   -+-+|+.|-+||||+|++.
T Consensus       104 dLt~lDLShNq-L~---------EvP~~------LE~AKn~iVLNLS~N~Iet-IPn~---lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen  104 DLTILDLSHNQ-LR---------EVPTN------LEYAKNSIVLNLSYNNIET-IPNS---LFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             cceeeecchhh-hh---------hcchh------hhhhcCcEEEEcccCcccc-CCch---HHHhhHhHhhhccccchhh
Confidence            46777777777 65         44433      4445677788888888876 6652   4567888888888888888


Q ss_pred             CcChhhhCCCCCCCEEeCCCCcC
Q 048227          156 DSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       156 g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                       .+|+.+.++..|++|+|++|.+
T Consensus       164 -~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  164 -MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             -hcCHHHHHHhhhhhhhcCCChh
Confidence             7888888888888888888865

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.20  E-value=2.2e-06  Score=74.69  Aligned_cols=94  Identities=28%  Similarity=0.336  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCCCCCCC----------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccc
Q 048227           74 TRRVMQLSLNKTTKFN----------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDS  137 (179)
Q Consensus        74 ~~~v~~l~L~~~~~l~----------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~  137 (179)
                      .++++.++|.+|. ++                +++.|.++ .||     ...|..=.++++|+|++|+++..--.    .
T Consensus       124 sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is-~i~-----~~sfp~~~ni~~L~La~N~It~l~~~----~  192 (873)
T KOG4194|consen  124 SGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLIS-EIP-----KPSFPAKVNIKKLNLASNRITTLETG----H  192 (873)
T ss_pred             ccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhh-ccc-----CCCCCCCCCceEEeeccccccccccc----c
Confidence            4778888888887 65                22333322 111     12244445788888888888764444    6


Q ss_pred             cCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          138 FGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       138 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |..+.+|..|.|++|+++-..+..|.++++|+.|+|..|++
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            77778888888888888844445667788888888888875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.18  E-value=7.1e-07  Score=74.59  Aligned_cols=91  Identities=30%  Similarity=0.324  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCCCCCCC---------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCc
Q 048227           76 RVMQLSLNKTTKFNDS---------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGS  140 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~---------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~  140 (179)
                      -|+.++++++. +..+               ..|...+-+|      ..+..+++|..|+|++|.+.. +|.    +++.
T Consensus       389 ~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~------~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~  456 (565)
T KOG0472|consen  389 IVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVP------LELSQLQKLTFLDLSNNLLND-LPE----EMGS  456 (565)
T ss_pred             ceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccch------HHHHhhhcceeeecccchhhh-cch----hhhh
Confidence            38999999988 6511               0111112222      236778999999999999887 998    9999


Q ss_pred             ccCCCEEeCcCCCCC----------------------CcChhh-hCCCCCCCEEeCCCCcC
Q 048227          141 LKQLKILNLGDNRFN----------------------DSILRY-LNTLTSLTTLILRFNNI  178 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~----------------------g~iP~~-l~~l~~L~~L~Ls~N~l  178 (179)
                      +..|+.||+|.|+|.                      |.+|++ +.+|.+|+.|||.+|.+
T Consensus       457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL  517 (565)
T ss_pred             hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence            999999999999887                      233333 67788999999998875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.17  E-value=2.4e-06  Score=77.51  Aligned_cols=57  Identities=30%  Similarity=0.286  Sum_probs=43.8

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|+.|++++|+|++ +|.    .   +.+|+.|++++|+|+ .+|..++++++|+.|+|++|+|+
T Consensus       402 s~L~~LdLS~N~Lss-IP~----l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        402 SELKELMVSGNRLTS-LPM----L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cCCCEEEccCCcCCC-CCc----c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            356666666666665 554    3   245777888888888 78999999999999999999885

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.14  E-value=4.6e-07  Score=75.41  Aligned_cols=83  Identities=25%  Similarity=0.377  Sum_probs=60.4

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcC-CCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD-NRF  154 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~-N~l  154 (179)
                      ..++|+|..|+ ++         .||+     ..|..+++|+.||||+|+|+-.-|.    .|..+++|..|-+.+ |+|
T Consensus        68 ~tveirLdqN~-I~---------~iP~-----~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   68 ETVEIRLDQNQ-IS---------SIPP-----GAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             cceEEEeccCC-cc---------cCCh-----hhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCch
Confidence            46788888887 76         4443     4588899999999999999987777    777777776665544 888


Q ss_pred             CCcCh-hhhCCCCCCCEEeCCCCcC
Q 048227          155 NDSIL-RYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       155 ~g~iP-~~l~~l~~L~~L~Ls~N~l  178 (179)
                      + .+| ..|++|.+|+-|.+.-|++
T Consensus       129 ~-~l~k~~F~gL~slqrLllNan~i  152 (498)
T KOG4237|consen  129 T-DLPKGAFGGLSSLQRLLLNANHI  152 (498)
T ss_pred             h-hhhhhHhhhHHHHHHHhcChhhh
Confidence            8 444 4677777777766665554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.08  E-value=8.7e-07  Score=73.80  Aligned_cols=67  Identities=27%  Similarity=0.354  Sum_probs=49.7

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      -|..|++|++|+|++|++++.-+.    .|..+..+++|.|..|++.-.--..|.++..|+.|+|.+|+||
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            478899999999999999996666    6666677777777777776444455666777777777777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.94  E-value=4.5e-06  Score=67.48  Aligned_cols=62  Identities=27%  Similarity=0.405  Sum_probs=27.9

Q ss_pred             CCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCCcC
Q 048227          113 FEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +++|++|++++|.+++.    ++.    .+..+++|++|++++|.+++.    ++..+..+++|++|++++|++
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAE----GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHH----HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            34455555555555421    111    233334555555555555422    223334445555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.93  E-value=4.4e-07  Score=79.71  Aligned_cols=90  Identities=20%  Similarity=0.307  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCCCCC---------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccC--ccccCccccc
Q 048227           75 RRVMQLSLNKTTKFN---------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE--GLYENKTYDS  137 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~---------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~--g~iP~~~~~~  137 (179)
                      ..+..++|+++. ++               +++.|+++ .+|.      .+++|++|+.|.+.+|+++  | ||.    .
T Consensus       245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt-~LP~------avcKL~kL~kLy~n~NkL~FeG-iPS----G  311 (1255)
T KOG0444|consen  245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLT-VLPD------AVCKLTKLTKLYANNNKLTFEG-IPS----G  311 (1255)
T ss_pred             hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhc-cchH------HHhhhHHHHHHHhccCcccccC-Ccc----c
Confidence            456778888887 66               23444443 3343      3677888888888888754  5 787    7


Q ss_pred             cCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          138 FGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       138 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++.|.+|+.+..++|++. -+|+.+.+|.+|+.|.|+.|++
T Consensus       312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            888888888888888887 6788888888888887777764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.93  E-value=2.4e-06  Score=77.48  Aligned_cols=81  Identities=26%  Similarity=0.403  Sum_probs=57.2

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      ++..||++++. +         +.+|..      +..+.+|+.|+++.|.+.. .|.    +..++++|++|.|..|++.
T Consensus        46 ~L~~l~lsnn~-~---------~~fp~~------it~l~~L~~ln~s~n~i~~-vp~----s~~~~~~l~~lnL~~n~l~  104 (1081)
T KOG0618|consen   46 KLKSLDLSNNQ-I---------SSFPIQ------ITLLSHLRQLNLSRNYIRS-VPS----SCSNMRNLQYLNLKNNRLQ  104 (1081)
T ss_pred             eeEEeeccccc-c---------ccCCch------hhhHHHHhhcccchhhHhh-Cch----hhhhhhcchhheeccchhh
Confidence            47889999887 5         355554      5556677777777777665 565    6777777777777777776


Q ss_pred             CcChhhhCCCCCCCEEeCCCCcC
Q 048227          156 DSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       156 g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                       ..|.++..+++|++|++++|+|
T Consensus       105 -~lP~~~~~lknl~~LdlS~N~f  126 (1081)
T KOG0618|consen  105 -SLPASISELKNLQYLDLSFNHF  126 (1081)
T ss_pred             -cCchhHHhhhcccccccchhcc
Confidence             6777777777777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.87  E-value=6.9e-06  Score=66.41  Aligned_cols=66  Identities=29%  Similarity=0.347  Sum_probs=41.7

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|+.|++++|.+++..+......+..+++|++|++++|.+++    .++..+..+++|++|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            6777777777777743221001145556678888888887774    24445556677888888877653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.82  E-value=4.9e-05  Score=72.26  Aligned_cols=62  Identities=21%  Similarity=0.089  Sum_probs=42.6

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      ++.+++|+.|+|++|..-..+|.    .++.+++|+.|+++++..-..+|..+ ++++|++|++++|
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             cccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            55567777777777666566777    77777777777777765545677655 5666666666655

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.81  E-value=5.3e-05  Score=69.01  Aligned_cols=14  Identities=36%  Similarity=0.551  Sum_probs=7.0

Q ss_pred             CCcEEeccCCccCc
Q 048227          115 ELQNLDLSGNRFEG  128 (179)
Q Consensus       115 ~L~~L~Ls~N~l~g  128 (179)
                      +|++|++++|+|++
T Consensus       303 ~L~~LdLS~N~L~~  316 (788)
T PRK15387        303 GLQELSVSDNQLAS  316 (788)
T ss_pred             ccceeECCCCcccc
Confidence            44555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=2.4e-06  Score=61.89  Aligned_cols=84  Identities=21%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227           74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR  153 (179)
Q Consensus        74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~  153 (179)
                      ..+++.++|++|. +.         .+|..     .-..++.++.|+|++|.++. +|.    ++..++.|+.|+++.|.
T Consensus        52 ~~el~~i~ls~N~-fk---------~fp~k-----ft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   52 GYELTKISLSDNG-FK---------KFPKK-----FTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNP  111 (177)
T ss_pred             CceEEEEecccch-hh---------hCCHH-----Hhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCc
Confidence            4578899999998 76         44443     12345678999999999997 898    89999999999999999


Q ss_pred             CCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          154 FNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       154 l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |. ..|..+..+.+|-+|+..+|.+
T Consensus       112 l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  112 LN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cc-cchHHHHHHHhHHHhcCCCCcc
Confidence            99 6788888899999999888764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.76  E-value=2e-05  Score=66.06  Aligned_cols=58  Identities=34%  Similarity=0.492  Sum_probs=39.3

Q ss_pred             CCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       115 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +|+.|++++|++.- +|.    .++.+++|+.|++++|+++ .+|...+.++.|+.|++++|++
T Consensus       141 nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i  198 (394)
T COG4886         141 NLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI  198 (394)
T ss_pred             hcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcc
Confidence            67777777777665 444    5666777777777777776 5666655667777777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.75  E-value=5.4e-05  Score=68.85  Aligned_cols=54  Identities=26%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       115 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      .|+.|+|++|++. .+|.    .+.  ++|+.|++++|+++ .+|..+.  ++|++|+|++|+|
T Consensus       242 ~L~~L~Ls~N~L~-~LP~----~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        242 TIQEMELSINRIT-ELPE----RLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             cccEEECcCCccC-cCCh----hHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc
Confidence            4555666666555 3554    332  35666666666666 4565443  3566666666665

>PLN03210 Resistant to P

Probab=97.71  E-value=9e-05  Score=70.51  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=54.7

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      +..+++|++|+|+++..-+.+|     .++.+++|+.|+|++|..-..+|..++++++|++|++++|.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            5678999999999887666677     57889999999999988778999999999999999998863

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.58  E-value=2.2e-05  Score=63.79  Aligned_cols=61  Identities=33%  Similarity=0.421  Sum_probs=49.2

Q ss_pred             CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..+.|+.+|||+|.++- |..    +..-++.++.|++|+|.+. .+ ..+..+++|+.|||++|.++
T Consensus       282 TWq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hHhhhhhccccccchhh-hhh----hhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence            35678999999999886 666    7777889999999999987 33 34788889999999998763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.52  E-value=2.3e-05  Score=63.72  Aligned_cols=60  Identities=35%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc---------------------ChhhhCCCCCCCEE
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS---------------------ILRYLNTLTSLTTL  171 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~---------------------iP~~l~~l~~L~~L  171 (179)
                      +++++.|++|+|.+.- + .    .+..+++|+.||||+|.++..                     --..++++-+|.+|
T Consensus       306 ~Pkir~L~lS~N~i~~-v-~----nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL  379 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRT-V-Q----NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL  379 (490)
T ss_pred             ccceeEEeccccceee-e-h----hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence            3555555555555543 2 1    445555555555555554410                     11345667778888


Q ss_pred             eCCCCcC
Q 048227          172 ILRFNNI  178 (179)
Q Consensus       172 ~Ls~N~l  178 (179)
                      |+++|++
T Consensus       380 Dl~~N~I  386 (490)
T KOG1259|consen  380 DLSSNQI  386 (490)
T ss_pred             cccccch
Confidence            8888876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.45  E-value=8.5e-05  Score=58.77  Aligned_cols=64  Identities=33%  Similarity=0.380  Sum_probs=49.4

Q ss_pred             cCCCCCCCcEEeccCC--ccCccccCccccccCcccCCCEEeCcCCCCCCcChhhh---CCCCCCCEEeCCCCcC
Q 048227          109 LFYPFEELQNLDLSGN--RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL---NTLTSLTTLILRFNNI  178 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N--~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l---~~l~~L~~L~Ls~N~l  178 (179)
                      .|..|++|++|+++.|  ++++.++.    -...+++|++|+++.|++.  +++.+   ..+.+|..|++.++.-
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             cCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCc
Confidence            3667889999999999  77776665    5567799999999999997  34443   4566788888887753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.44  E-value=1.1e-05  Score=70.12  Aligned_cols=63  Identities=21%  Similarity=0.292  Sum_probs=53.0

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++.+.+|+.|.+..|++.. +|+    ++..| .|..||+|.|+++ .||..|.+|+.|++|-|.+|.|+
T Consensus       185 l~~l~slr~l~vrRn~l~~-lp~----El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLED-LPE----ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhHHHHHHHHHhhhhhhh-CCH----HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            6677778888888888776 666    67754 4889999999999 89999999999999999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.43  E-value=2.2e-05  Score=56.98  Aligned_cols=64  Identities=28%  Similarity=0.456  Sum_probs=54.3

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccC-cccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFG-SLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +....+|..++|++|.|.. +|+    .|. ..+.++.|+|++|.++ .+|.++..++.|+.|++++|.|.
T Consensus        49 l~~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             HhCCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            3455778899999999997 665    554 4468999999999999 89999999999999999999873

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.42  E-value=4.7e-05  Score=70.32  Aligned_cols=63  Identities=32%  Similarity=0.400  Sum_probs=57.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      |..++.|++|||++|.=-+.+|.    +++.|-+|++|+|+...++ .+|..++++.+|.+|++..+.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence            67799999999999877778999    9999999999999999999 899999999999999998654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.41  E-value=4.3e-05  Score=64.10  Aligned_cols=63  Identities=27%  Similarity=0.358  Sum_probs=53.8

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      .+..++.|+.|++++|+++- +|.    ..+.++.|+.|++++|+++ .+|..+..+..|++|.+++|+
T Consensus       158 ~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            36788999999999999997 666    5568899999999999999 788877777779999998884

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.22  E-value=0.0001  Score=36.20  Aligned_cols=16  Identities=44%  Similarity=0.613  Sum_probs=8.1

Q ss_pred             CcEEeccCCccCccccC
Q 048227          116 LQNLDLSGNRFEGLYEN  132 (179)
Q Consensus       116 L~~L~Ls~N~l~g~iP~  132 (179)
                      |++|||++|+|+ .||+
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            445555555555 3544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.18  E-value=0.00021  Score=66.15  Aligned_cols=67  Identities=31%  Similarity=0.275  Sum_probs=58.2

Q ss_pred             CCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCC
Q 048227           98 GGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF  175 (179)
Q Consensus        98 g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  175 (179)
                      +.+|.+      ++.|-+|++|+|+...++. +|.    .+++|+.|.+||+..+..-..+|.....+++|++|.+..
T Consensus       585 ~~LP~~------I~~Li~LryL~L~~t~I~~-LP~----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  585 SKLPSS------IGELVHLRYLDLSDTGISH-LPS----GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             CcCChH------HhhhhhhhcccccCCCccc-cch----HHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            455654      7889999999999999995 999    999999999999999988777777777899999998854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.10  E-value=0.00029  Score=59.85  Aligned_cols=61  Identities=41%  Similarity=0.491  Sum_probs=42.9

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|+++.. .     .+..++.|+.|++++|.++ .+ ..+..++.|+.+++++|++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i-~-----~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i  174 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKL-E-----GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRI  174 (414)
T ss_pred             hhhhhcchheeccccccccc-c-----chhhccchhhheeccCcch-hc-cCCccchhhhcccCCcchh
Confidence            45577888888888888763 2     3566677888888888877 23 3345577788888887765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.01  E-value=0.00034  Score=59.45  Aligned_cols=63  Identities=37%  Similarity=0.403  Sum_probs=52.8

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|+.|++..|++.. |..    .+..+++|++|++++|+++...+  +..++.|+.|++++|.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~----~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IEN----LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             cccccceeeeeccccchhh-ccc----chhhhhcchheeccccccccccc--hhhccchhhheeccCcch
Confidence            6678999999999999998 443    37889999999999999985433  567778999999999874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.91  E-value=6.7e-05  Score=65.33  Aligned_cols=60  Identities=27%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      .+..|..||.+.|.+.. +|+    .++.+.+|+.|.+..|++. .+|+++.. -.|..||++.|++
T Consensus       164 ~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNki  223 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKI  223 (722)
T ss_pred             cchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCce
Confidence            33444444444444443 344    4455555555555555554 45555542 2355566666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.90  E-value=0.00058  Score=33.47  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=18.8

Q ss_pred             CCCEEeCcCCCCCCcChhhhCCC
Q 048227          143 QLKILNLGDNRFNDSILRYLNTL  165 (179)
Q Consensus       143 ~L~~L~Ls~N~l~g~iP~~l~~l  165 (179)
                      +|++|||++|+|+ .||+.|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            5899999999999 899987654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.87  E-value=0.0017  Score=50.07  Aligned_cols=81  Identities=21%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      ....|||+.+. +.         .       ...|..++.|+.|.|++|+++..-|.    --..+++|..|.|.+|.+.
T Consensus        43 ~~d~iDLtdNd-l~---------~-------l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDND-LR---------K-------LDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccc-hh---------h-------cccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchh
Confidence            35667777777 54         1       12366788999999999999984443    2234577999999999886


Q ss_pred             CcCh--hhhCCCCCCCEEeCCCCcC
Q 048227          156 DSIL--RYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       156 g~iP--~~l~~l~~L~~L~Ls~N~l  178 (179)
                       .+-  .-+..+++|++|.+-+|+.
T Consensus       102 -~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen  102 -ELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             -hhhhcchhccCCccceeeecCCch
Confidence             222  2356788899998888865

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.51  E-value=0.00038  Score=62.50  Aligned_cols=42  Identities=29%  Similarity=0.417  Sum_probs=31.0

Q ss_pred             CCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh
Q 048227          111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL  159 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP  159 (179)
                      .-++.|+.|||++|+|+. + .    .+..+++|++|||++|.+. .+|
T Consensus       184 qll~ale~LnLshNk~~~-v-~----~Lr~l~~LkhLDlsyN~L~-~vp  225 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTK-V-D----NLRRLPKLKHLDLSYNCLR-HVP  225 (1096)
T ss_pred             HHHHHhhhhccchhhhhh-h-H----HHHhcccccccccccchhc-ccc
Confidence            335678888888888875 2 2    5777888888888888887 555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.46  E-value=0.00024  Score=63.69  Aligned_cols=68  Identities=28%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             CCCCCCCcEEeccCCccCccccCcc------------------ccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCE
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKT------------------YDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTT  170 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~------------------~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~  170 (179)
                      +..|++|++|||+.|++.- +|.-+                  +..+.+|++|+.||+++|-+++.-- ..+..|..|+.
T Consensus       205 Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV  283 (1096)
T ss_pred             HHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence            5667888888888888875 55310                  0134455556666666665554321 22334455556


Q ss_pred             EeCCCCcC
Q 048227          171 LILRFNNI  178 (179)
Q Consensus       171 L~Ls~N~l  178 (179)
                      |.|.+|.+
T Consensus       284 L~LeGNPl  291 (1096)
T KOG1859|consen  284 LWLEGNPL  291 (1096)
T ss_pred             HhhcCCcc
Confidence            66666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.00071  Score=55.10  Aligned_cols=86  Identities=22%  Similarity=0.212  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .+|.++||.+|. +++.+            -....+.+++.|+.|+|+.|+++..|-.    .-..+.+|+.|-|.+..+
T Consensus        71 ~~v~elDL~~N~-iSdWs------------eI~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   71 TDVKELDLTGNL-ISDWS------------EIGAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhcccch-hccHH------------HHHHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCC
Confidence            367777777777 65211            1112356788999999999999877653    224667888888888877


Q ss_pred             CCcCh-hhhCCCCCCCEEeCCCCc
Q 048227          155 NDSIL-RYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       155 ~g~iP-~~l~~l~~L~~L~Ls~N~  177 (179)
                      ...-- ..+..++.++.|.++.|.
T Consensus       134 ~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  134 SWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             Chhhhhhhhhcchhhhhhhhccch
Confidence            65433 455678888888888884

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.22  E-value=0.0035  Score=49.73  Aligned_cols=61  Identities=30%  Similarity=0.362  Sum_probs=45.9

Q ss_pred             CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCC--CCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN--RFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..|+.|.+.+-.++. + .    .+..|++|+.|++|.|  +.++.++...-.+++|++|+|++|++.
T Consensus        42 ~~~le~ls~~n~gltt-~-~----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT-L-T----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceee-c-c----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3455666555555543 1 1    5667899999999999  777777777778899999999999874

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.96  E-value=0.00013  Score=57.36  Aligned_cols=84  Identities=14%  Similarity=0.058  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227           74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR  153 (179)
Q Consensus        74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~  153 (179)
                      ..||+.||++.+. +..+.               ..|.-++.|..||++.|++.- .|.    .++++..+..+++..|.
T Consensus        41 ~kr~tvld~~s~r-~vn~~---------------~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~   99 (326)
T KOG0473|consen   41 FKRVTVLDLSSNR-LVNLG---------------KNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNN   99 (326)
T ss_pred             cceeeeehhhhhH-HHhhc---------------cchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccc
Confidence            3689999999887 65211               125557889999999999876 788    89999999999999999


Q ss_pred             CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          154 FNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       154 l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++ ..|.+++..+.++++++-.|.|+
T Consensus       100 ~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  100 HS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hh-hCCccccccCCcchhhhccCcch
Confidence            98 89999999999999999888763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.90  E-value=0.0093  Score=46.02  Aligned_cols=60  Identities=28%  Similarity=0.401  Sum_probs=48.3

Q ss_pred             CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +.+...+||++|.+-- ++     .|..+++|..|.|++|+++-.-|.--..+++|+.|.|.+|+|
T Consensus        41 ~d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            3567899999999865 44     678899999999999999955554444567899999999986

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=0.009  Score=50.86  Aligned_cols=63  Identities=30%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhh-----hCCCCCCCEEeCCCCcC
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRY-----LNTLTSLTTLILRFNNI  178 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~-----l~~l~~L~~L~Ls~N~l  178 (179)
                      +..|+.|||++|++-. .+.  +.-.+.++.|+.|+++.+.++. .+|+.     ...+++|++|++..|++
T Consensus       245 ~~~L~~LdLs~N~li~-~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLID-FDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhHHhhccccCCcccc-ccc--ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            5567777777777643 221  0045666777777777776653 22332     24566777777777765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.30  E-value=0.01  Score=27.10  Aligned_cols=13  Identities=38%  Similarity=0.784  Sum_probs=4.6

Q ss_pred             CCCEEeCcCCCCC
Q 048227          143 QLKILNLGDNRFN  155 (179)
Q Consensus       143 ~L~~L~Ls~N~l~  155 (179)
                      +|+.|++++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.87  E-value=0.017  Score=46.72  Aligned_cols=103  Identities=22%  Similarity=0.308  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCCCCC---------------CCC----cCccCCCCCccccC-----CccCCCCCCCcEEeccCCccCccc
Q 048227           75 RRVMQLSLNKTTKFN---------------DSN----YNLFYGGPSASLLN-----MSLFYPFEELQNLDLSGNRFEGLY  130 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~---------------~~~----~n~~~g~ip~~~~~-----~~~l~~l~~L~~L~Ls~N~l~g~i  130 (179)
                      ..+++++|++|. +.               ++.    ...|+|.....+..     ...+-+|++|+.++||.|.|.-..
T Consensus        30 d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          30 DELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             cceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            357888999887 54               111    12344544333211     234677999999999999998877


Q ss_pred             cCccccccCcccCCCEEeCcCCCCCC----cChhhh---------CCCCCCCEEeCCCCcC
Q 048227          131 ENKTYDSFGSLKQLKILNLGDNRFND----SILRYL---------NTLTSLTTLILRFNNI  178 (179)
Q Consensus       131 P~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l---------~~l~~L~~L~Ls~N~l  178 (179)
                      |+.--.-++.-+.|.+|.+++|.+--    .|-..+         .+-+.|++++...|+|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            76100124566889999999998852    222221         2357788888888876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.74  E-value=0.031  Score=28.11  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=12.2

Q ss_pred             ccCCCEEeCcCCCCCCcChhh
Q 048227          141 LKQLKILNLGDNRFNDSILRY  161 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~g~iP~~  161 (179)
                      |++|++|+|++|+++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356667777777776 44543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.74  E-value=0.031  Score=28.11  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=12.2

Q ss_pred             ccCCCEEeCcCCCCCCcChhh
Q 048227          141 LKQLKILNLGDNRFNDSILRY  161 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~g~iP~~  161 (179)
                      |++|++|+|++|+++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356667777777776 44543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.74  E-value=0.0097  Score=49.24  Aligned_cols=102  Identities=21%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCCCCCC---------------CC----CcCccCCCCCccccC-----CccCCCCCCCcEEeccCCccCccc
Q 048227           75 RRVMQLSLNKTTKFN---------------DS----NYNLFYGGPSASLLN-----MSLFYPFEELQNLDLSGNRFEGLY  130 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~---------------~~----~~n~~~g~ip~~~~~-----~~~l~~l~~L~~L~Ls~N~l~g~i  130 (179)
                      ..++.|+|+++. +.               .+    -.+.|+|.+-.++..     ...+-..++|++||||.|.|.-.-
T Consensus        30 ~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            457888888876 54               01    123455655433211     123455679999999999986444


Q ss_pred             cCcccc-ccCcccCCCEEeCcCCCCCCc-------------ChhhhCCCCCCCEEeCCCCcC
Q 048227          131 ENKTYD-SFGSLKQLKILNLGDNRFNDS-------------ILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       131 P~~~~~-~l~~l~~L~~L~Ls~N~l~g~-------------iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +. ++. -+..+..|++|.|.+|.+.-.             .-.-.+.-+.|+++...+|++
T Consensus       109 ~~-~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen  109 IR-GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             hH-HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            43 111 245678899999999988621             111234456889998888876

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.73  E-value=0.017  Score=49.30  Aligned_cols=68  Identities=22%  Similarity=0.328  Sum_probs=43.6

Q ss_pred             CCCCCCCcEEeccCCccCcc-ccCcc-ccccCcccCCCEEeCcCCCCCCcCh--hhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGL-YENKT-YDSFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~-iP~~~-~~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~l  178 (179)
                      .+.|+.|+.|+++.+.++.. +|+.+ ..-...+++|++|+++.|++. ..+  ..+..+.+|+.|....|.|
T Consensus       267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccc
Confidence            56788888888888877642 23300 001356788999999999985 233  3445566677776666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.39  E-value=0.021  Score=47.32  Aligned_cols=69  Identities=29%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChh----hh-CCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR----YL-NTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~----~l-~~l~~L~~L~Ls~N~l  178 (179)
                      |..+++|++|||..|.|+-.-...--..+..+++|+.|++++..++-.=-.    .+ ...++|++|.+.+|.+
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            566788888888888886321100000345566777777777766532111    11 2245667777666655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.13  E-value=0.018  Score=47.06  Aligned_cols=63  Identities=25%  Similarity=0.353  Sum_probs=47.9

Q ss_pred             CCCCCcEEeccCCccCcc--ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          112 PFEELQNLDLSGNRFEGL--YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~--iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ..+.++.+||.+|.++..  |-.    -+.+|+.|+.|+|+.|.++..|-..-..+.+|++|-|.+..+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~----ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGA----ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHH----HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            467899999999999852  222    467899999999999999866543324667888888876544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.45  E-value=0.051  Score=49.45  Aligned_cols=42  Identities=24%  Similarity=0.303  Sum_probs=26.5

Q ss_pred             ccCcccCCCEEeCcCCCCCCcC--hh----hhCCCCCCCEEeCCCCcC
Q 048227          137 SFGSLKQLKILNLGDNRFNDSI--LR----YLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       137 ~l~~l~~L~~L~Ls~N~l~g~i--P~----~l~~l~~L~~L~Ls~N~l  178 (179)
                      .+-+|++|+.||+|..+.....  ..    .-..|++|+.||.|++.+
T Consensus       215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            4566778888888877665321  21    123477888888777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.98  E-value=0.083  Score=48.09  Aligned_cols=17  Identities=24%  Similarity=0.509  Sum_probs=8.0

Q ss_pred             ccCCCEEeCcCCCCCCc
Q 048227          141 LKQLKILNLGDNRFNDS  157 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~g~  157 (179)
                      |++|+.||.|+..++..
T Consensus       249 LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEE  265 (699)
T ss_pred             CccccEEecCCcchhHH
Confidence            44455555554444433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.02  E-value=0.021  Score=28.22  Aligned_cols=13  Identities=46%  Similarity=0.733  Sum_probs=4.9

Q ss_pred             CCcEEeccCCccC
Q 048227          115 ELQNLDLSGNRFE  127 (179)
Q Consensus       115 ~L~~L~Ls~N~l~  127 (179)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.00  E-value=0.0089  Score=48.43  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=39.2

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhh-----hCCCCCCCEEe
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY-----LNTLTSLTTLI  172 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~-----l~~l~~L~~L~  172 (179)
                      +..|++|++|+|..|.|.. +..  +.-+.++++|+.|.|..|.-.|.-+..     +.-|++|+.||
T Consensus        59 l~rCtrLkElYLRkN~I~s-ldE--L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   59 LQRCTRLKELYLRKNCIES-LDE--LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHHHHHHHhccccc-HHH--HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            5667777888887777654 211  113567788888888888887776643     34466666664

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.64  E-value=0.31  Score=24.82  Aligned_cols=15  Identities=33%  Similarity=0.603  Sum_probs=11.8

Q ss_pred             ccCCCEEeCcCCCCC
Q 048227          141 LKQLKILNLGDNRFN  155 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~  155 (179)
                      +++|+.|+|+.|+++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            467888888888886

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.45  E-value=1.6  Score=29.99  Aligned_cols=59  Identities=14%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRF  175 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~  175 (179)
                      .|..++.|+.+.+.+ .+.. ++..   .+..+++|+.+++..+ +. .++ ..+.++ +|+.+.+..
T Consensus        53 ~F~~~~~l~~i~~~~-~~~~-i~~~---~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   53 AFSNCKSLESITFPN-NLKS-IGDN---AFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTT-TT-EEEEETS-TT-E-E-TT---TTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             eeecccccccccccc-cccc-cccc---cccccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            355666677777654 3322 2221   4556677777777654 44 333 344554 666666643

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.80  E-value=0.35  Score=24.61  Aligned_cols=18  Identities=33%  Similarity=0.504  Sum_probs=13.1

Q ss_pred             cCCCEEeCcCCCCCCcChh
Q 048227          142 KQLKILNLGDNRFNDSILR  160 (179)
Q Consensus       142 ~~L~~L~Ls~N~l~g~iP~  160 (179)
                      .+|+.|++++|+|+ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35777888888887 5665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.49  E-value=0.046  Score=44.42  Aligned_cols=61  Identities=34%  Similarity=0.342  Sum_probs=48.0

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh--hhhCCCCCCCEEeCCCCc
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~  177 (179)
                      ...++.|++|.||-|.++..-      .+..+++|++|+|-.|.|. .+-  ..+.++++|+.|-|..|.
T Consensus        37 c~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCC
Confidence            456788999999999988743      4678889999999999887 333  456788899998888774

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.36  E-value=1.1  Score=38.52  Aligned_cols=61  Identities=13%  Similarity=0.200  Sum_probs=39.0

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccC-CccCccccCccccccCcccCCCEEeCcCC-
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLKQLKILNLGDN-  152 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N-  152 (179)
                      ...+.|+++++. +.         .+|.       +  -.+|+.|++++ +.++ .+|.    .+  .++|+.|++++| 
T Consensus        52 ~~l~~L~Is~c~-L~---------sLP~-------L--P~sLtsL~Lsnc~nLt-sLP~----~L--P~nLe~L~Ls~Cs  105 (426)
T PRK15386         52 RASGRLYIKDCD-IE---------SLPV-------L--PNELTEITIENCNNLT-TLPG----SI--PEGLEKLTVCHCP  105 (426)
T ss_pred             cCCCEEEeCCCC-Cc---------ccCC-------C--CCCCcEEEccCCCCcc-cCCc----hh--hhhhhheEccCcc
Confidence            456777887776 65         3331       1  13589999987 4553 3665    44  368999999988 


Q ss_pred             CCCCcChhhh
Q 048227          153 RFNDSILRYL  162 (179)
Q Consensus       153 ~l~g~iP~~l  162 (179)
                      ++. .+|+.+
T Consensus       106 ~L~-sLP~sL  114 (426)
T PRK15386        106 EIS-GLPESV  114 (426)
T ss_pred             ccc-cccccc
Confidence            554 577543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.71  E-value=0.71  Score=23.66  Aligned_cols=12  Identities=33%  Similarity=0.708  Sum_probs=5.7

Q ss_pred             CCCEEeCcCCCC
Q 048227          143 QLKILNLGDNRF  154 (179)
Q Consensus       143 ~L~~L~Ls~N~l  154 (179)
                      +|++|||++|.|
T Consensus         3 ~L~~LdL~~N~i   14 (28)
T smart00368        3 SLRELDLSNNKL   14 (28)
T ss_pred             ccCEEECCCCCC
Confidence            344455555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.76  E-value=0.023  Score=45.05  Aligned_cols=63  Identities=24%  Similarity=0.294  Sum_probs=53.5

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+...+.||++.|++.- +-.    .++.++.|..||++.|++. ..|..++++..++.+++..|..
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~  100 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH  100 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch
Confidence            4556788999999999875 444    7888899999999999998 7899999999999999888864

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=82.40  E-value=2.9  Score=28.70  Aligned_cols=66  Identities=14%  Similarity=0.254  Sum_probs=40.2

Q ss_pred             cCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       105 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      +....|..+++|+.+.+..+ +.. ++..   .+..++.|+.+.+.. .+.-.-...|..+++|+.+++..|
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~~-i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LTS-IGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TSC-E-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             eChhhccccccccccccccc-ccc-ccee---eeecccccccccccc-cccccccccccccccccccccCcc
Confidence            33455788889999999875 554 4432   677888899999975 444223345667899999988654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=82.10  E-value=0.17  Score=41.67  Aligned_cols=59  Identities=27%  Similarity=0.331  Sum_probs=41.9

Q ss_pred             CCCcEEeccCCccCcc-ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          114 EELQNLDLSGNRFEGL-YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~-iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      +.||+||||...++-. +-.    -+..+.+|+.|.|.++++...|-..+.+-.+|+.|+|+..
T Consensus       185 sRlq~lDLS~s~it~stl~~----iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHG----ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhhHHhhcchhheeHHHHHH----HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            3588888888777632 111    3456778888888888888888777877778888877653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=80.17  E-value=0.81  Score=37.77  Aligned_cols=59  Identities=27%  Similarity=0.175  Sum_probs=42.5

Q ss_pred             CCCCCCcEEeccCCc-cCccccCccccccCcccCCCEEeCcCCCCCCcChhh---hCCCCCCCEEeCCC
Q 048227          111 YPFEELQNLDLSGNR-FEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY---LNTLTSLTTLILRF  175 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~-l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~Ls~  175 (179)
                      ..+++|.+||||.|. ++...-.    .|-+++.|++|.++...  +.+|..   +...++|.+|++.+
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~----~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQ----EFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HhCCceeeeccccccccCchHHH----HHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence            457899999999874 4332222    67888999998887654  567764   46778899998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.7 bits (218), Expect = 8e-21
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 18  ACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRV 77
             L  E   L+  K           D  +L  W       + + C  ++GV C     +V
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSS-----NKNPC-TFDGVTCR--DDKV 52

Query: 78  MQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDS 137
             + L      +    N+ +   S+SLL+++       L++L LS +   G     +   
Sbjct: 53  TSIDL------SSKPLNVGFSAVSSSLLSLT------GLESLFLSNSHING-----SVSG 95

Query: 138 FGSLKQLKILNLGDNRFNDSI--LRYLNTLTSLTTLILRFNNIE 179
           F     L  L+L  N  +  +  L  L + + L  L +  N ++
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 94  NLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153
           N+  G     L+ +        L+ L L  N   G    +      +   L  ++L +NR
Sbjct: 452 NMLEGEIPQELMYVK------TLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNR 501

Query: 154 FNDSILRYLNTLTSLTTLILRFNN 177
               I +++  L +L  L L  N+
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNS 525

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 94  NLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153
           N F G    +L N S      EL +L LS N   G        S GSL +L+ L L  N 
Sbjct: 404 NGFTGKIPPTLSNCS------ELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNM 453

Query: 154 FNDSILRYLNTLTSLTTLILRFNNIE 179
               I + L  + +L TLIL FN++ 
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD 151
           ++N   G   + L N +       L  + LS NR  G    +     G L+ L IL L +
Sbjct: 474 DFNDLTGEIPSGLSNCT------NLNWISLSNNRLTG----EIPKWIGRLENLAILKLSN 523

Query: 152 NRFNDSILRYLNTLTSLTTLILRFNNI 178
           N F+ +I   L    SL  L L  N  
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ LD+S N F            G    L+ L++  N+ +    R ++T T L  L +  
Sbjct: 202 LEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 176 NNIE 179
           N   
Sbjct: 257 NQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 25/106 (23%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEG--------------LYENK----- 133
            N   G  S ++   +      EL+ L++S N+F G              L ENK     
Sbjct: 232 GNKLSGDFSRAISTCT------ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285

Query: 134 TYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
                G+   L  L+L  N F  ++  +  + + L +L L  NN  
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN 152
           +N   G   +SL ++S      +L++L L  N  EG    +       +K L+ L L  N
Sbjct: 427 FNYLSGTIPSSLGSLS------KLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFN 476

Query: 153 RFNDSILRYLNTLTSLTTLILRFNNIE 179
                I   L+  T+L  + L  N + 
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 91  SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLG 150
           S+  L + G  +  L ++       L+ LDLS N   G      +       +LK L + 
Sbjct: 134 SSNTLDFPGKVSGGLKLN------SLEVLDLSANSISGANVV-GWVLSDGCGELKHLAIS 186

Query: 151 DNRFNDSILRYLNTLTSLTTLILRFNNI 178
            N+ +  +   ++   +L  L +  NN 
Sbjct: 187 GNKISGDV--DVSRCVNLEFLDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN 152
            N FYG       + S       L++L LS N F G       D+   ++ LK+L+L  N
Sbjct: 303 GNHFYGAVPPFFGSCS------LLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFN 353

Query: 153 RFNDSILRYL-NTLTSLTTLILRFNNIE 179
            F+  +   L N   SL TL L  NN  
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L+L  N   G       D  G L+ L IL+L  N+ +  I + ++ LT LT + L  
Sbjct: 658 LFILNLGHNDISG----SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 176 NNIE 179
           NN+ 
Sbjct: 714 NNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN 152
           +N F G    SL N+S       L  LDLS N F G               L+ L L +N
Sbjct: 352 FNEFSGELPESLTNLS-----ASLLTLDLSSNNFSGPILPN--LCQNPKNTLQELYLQNN 404

Query: 153 RFNDSILRYLNTLTSLTTLILRFNNIE 179
            F   I   L+  + L +L L FN + 
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           LQ+LD+SGN+  G +      +  +  +LK+LN+  N+F   I      L SL  L L  
Sbjct: 225 LQHLDISGNKLSGDFS----RAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278

Query: 176 NNI 178
           N  
Sbjct: 279 NKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 90  DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL 149
             N   F G  S  L  +S           +++   + G     T  +F +   +  L++
Sbjct: 590 AGNLLEFQGIRSEQLNRLS------TRNPCNITSRVYGG----HTSPTFDNNGSMMFLDM 639

Query: 150 GDNRFNDSILRYLNTLTSLTTLILRFNNI 178
             N  +  I + + ++  L  L L  N+I
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 43/181 (23%)

Query: 19  CLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCD-DWEGVKCSATTR-- 75
           C   ++ ALL++K           +   L SW       ++DCC+  W GV C   T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTY 50

Query: 76  RVMQLSLN------------------KTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQ 117
           RV  L L+                            N   G    ++  ++      +L 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------QLH 104

Query: 118 NLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177
            L ++     G       D    +K L  L+   N  + ++   +++L +L  +    N 
Sbjct: 105 YLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 178 I 178
           I
Sbjct: 161 I 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN 152
            N+  G  S    +          Q + L+ N              G  K L  L+L +N
Sbjct: 206 RNMLEGDASVLFGSDK------NTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNN 254

Query: 153 RFNDSILRYLNTLTSLTTLILRFNNIE 179
           R   ++ + L  L  L +L + FNN+ 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 15/104 (14%)

Query: 87  KFNDSNYNLFYGGPSASLLNMS-----------LFYPFEELQNLDLSGNRFEGLYENKTY 135
               +   +F G  S  +L M+           +F     L  LDLS  + E L    + 
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----SP 487

Query: 136 DSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            +F SL  L++LN+  N F          L SL  L    N+I 
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN 152
           +N      S S  +        ELQ LDLS    + + +     ++ SL  L  L L  N
Sbjct: 37  FNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGN 86

Query: 153 RFNDSILRYLNTLTSLTTLILRFNNI 178
                 L   + L+SL  L+    N+
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNL 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN 152
                     +  ++S       L  L L+GN  + L       +F  L  L+ L   + 
Sbjct: 61  RCEIQTIEDGAYQSLS------HLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVET 110

Query: 153 RFNDSILRYLNTLTSLTTLILRFNNIE 179
                    +  L +L  L +  N I+
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
            +NLDLS N    L       SF S  +L++L+L              +L+ L+TLIL  
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 176 NNI 178
           N I
Sbjct: 86  NPI 88

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F   E+L++LD   +  + + E   +  F SL+ L  L++       +     N L+SL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 170 TLILRFNNI 178
            L +  N+ 
Sbjct: 449 VLKMAGNSF 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 91  SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLG 150
            N   F G  S S    +       L+ LDLS N    +  N     F  L+QL+ L+  
Sbjct: 356 RNGLSFKGCCSQSDFGTT------SLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQ 404

Query: 151 DNRFNDSI-LRYLNTLTSLTTLILRFNNIE 179
            +            +L +L  L +   +  
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD 151
                    +  + ++        L+ L+++ N  +        + F +L  L+ L+L  
Sbjct: 108 VETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSS 158

Query: 152 NRFNDSILRYLNTLTSLT----TLILRFNNIE 179
           N+        L  L  +     +L L  N + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
            LF     + +  L     E +        F      + L L + +F       L +L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERV------KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 168 LTTLILRFNNI 178
           LT    +  N 
Sbjct: 330 LTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%)

Query: 76  RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSL----FYPFEELQNLDLSGNRFEGLYE 131
               L      +  D +YN  +G     L+N           + L+ L  + N+    + 
Sbjct: 285 SSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF- 341

Query: 132 NKTYDSFGSLKQLKILNLGDNRFN--DSILRYLNTLTSLTTLILRFNNIE 179
                S   L  L+ L+L  N  +      +     TSL  L L FN + 
Sbjct: 342 -----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           S L+   F     L  L L  N  + +  N     F   K L  L+L  N  + + L   
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 163 NTLTSLTTLILRFNNIE 179
             L +L  L+L  N I+
Sbjct: 142 VQLENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
             L  + F     LQ L L     + +  + +   F  L+ L IL+L +N   +     L
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 163 NTLTSLTTLILRFNNIE 179
             L  L  L L+ NN+ 
Sbjct: 501 EGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
             +        L  L+L  N F+ +      + F  L +LKI++LG N  N       N 
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEI----PVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 165 LTSLTTLILRFNNIE 179
             SL +L L+ N I 
Sbjct: 583 QVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN 152
           +N     P+A+    S      +L +LD+  N    L      +    L  LK+LNL  N
Sbjct: 34  HNQLRRLPAANFTRYS------QLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHN 83

Query: 153 RFNDSILRYLNTLTSLTTLILRFNNIE 179
             +    +     T+LT L L  N+I+
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQ 110

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 76  RVMQLSLNKTTKFNDSNYNLFYGGPSASL--LNMS----------LFYPFEELQNLDLSG 123
           + + LS + T+    +N   F     + L  LN++           F     L+ LDL  
Sbjct: 356 KYLSLSNSFTSLRTLTN-ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 124 NRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
           N             +  L+ +  + L  N++          + SL  L+LR   ++
Sbjct: 415 NEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)

Query: 106 NMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR--------FNDS 157
           + S F P   L  LDLS N    +      D    L++L+IL+L  N             
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANI----NDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 158 ILRYLNTLTSLTTLILRFNNIE 179
            + +L  L+ L  L L  N  +
Sbjct: 528 PIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
              +  L+L+ N+   L       +F    QL  L++G N  +         L  L  L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 173 LRFNNI 178
           L+ N +
Sbjct: 80  LQHNEL 85

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD 151
           + +      + + L +     +  L  LDLS N    +      DSF  L QL+   L  
Sbjct: 230 SNSQLSTTSNTTFLGL----KWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEY 281

Query: 152 NRFNDSILRYLNTLTSLTTLILRFNNIE 179
           N         L+ L ++  L L+ +  +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLK--QLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
            ++NL LS ++           +F  LK   L +L+L  N  N         L  L    
Sbjct: 223 SIRNLSLSNSQLSTTSN----TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 173 LRFNNI 178
           L +NNI
Sbjct: 279 LEYNNI 284

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL---NTLTSLTTL 171
            L+ L+LS N+ +          F ++ +L  L L + +   S+   L      TS+  L
Sbjct: 172 SLKKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 172 ILRFNNIE 179
            L  + + 
Sbjct: 228 SLSNSQLS 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           S   +      E LQ L LS N+ + L   +      +   LK L L  N+  +      
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEEL--DIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 163 NTLTSLTTLILRFNNI 178
           + +  L  L L    +
Sbjct: 192 HAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-NTLT 166
            +F    EL+ +DL  N    L        F +   LK LNL  N       +       
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPA----SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 167 SLTTLILRFNNIE 179
           +LT L +RFN  +
Sbjct: 610 NLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 17/74 (22%), Positives = 26/74 (35%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           +  ++F     L+ L LS +               +   L ILNL  N+ +       + 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 165 LTSLTTLILRFNNI 178
           L  L  L L  N I
Sbjct: 404 LGHLEVLDLGLNEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 90  DSNYNLFYGGPSASLLNMSLFYPFEELQNL---DLSGNRFEGLYENKTYDSFGSLKQLKI 146
           +   +      S + L     + F+ L+ L   ++  N   G+  N     F  L  LK 
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN----MFTGLINLKY 357

Query: 147 LNLGDNRFNDSILRYLN----TLTSLTTLILRFNNI 178
           L+L ++  +   L          + L  L L  N I
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENK-----TYDSFGSLKQLKI 146
            YN      S SL  +        ++ L+L  +  +              SF  LK L+ 
Sbjct: 280 EYNNIQHLFSHSLHGLF------NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 147 LNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
           LN+ DN            L +L  L L  +   
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY- 161
            +   S+F     L  LD+S       +       F  L  L++L +  N F ++ L   
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 162 LNTLTSLTTLILRFNNIE 179
              L +LT L L    +E
Sbjct: 466 FTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           L    F+ F ELQ LDLS    + + +     ++ SL  L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 165 LTSLTTLILRFNNIE 179
           L+SL  L+    N+ 
Sbjct: 99  LSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           +     L  L L+GN  + L       +F  L  L+ L   +          +  L +L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 170 TLILRFNNI 178
            L +  N I
Sbjct: 128 ELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           S F   E+L++LD   +  + + E   +  F SL+ L  L++       +     N L+S
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 168 LTTLILRFNNI 178
           L  L +  N+ 
Sbjct: 447 LEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
               +F     L+ L ++GN F+  +     D F  L+ L  L+L   +         N+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 165 LTSLTTLILRFNNI 178
           L+SL  L +  N +
Sbjct: 493 LSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLN 163
           L +  F     LQ L         L         G LK LK LN+  N      +  Y +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 164 TLTSLTTLILRFNNIE 179
            LT+L  L L  N I+
Sbjct: 147 NLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
               +NLDLS N    L       SF S  +L++L+L              +L+ L+TLI
Sbjct: 27  PFSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 173 LRFNNI 178
           L  N I
Sbjct: 83  LTGNPI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 102 ASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY 161
                  +F     L  LDLS  + E L       +F SL  L++LN+  N+        
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 162 LNTLTSLTTLILRFNNI 178
            + LTSL  + L  N  
Sbjct: 514 FDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
              N         L+ LDLS N            S      LK L+L  N    ++    
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGV-ITMSSNF 392

Query: 163 NTLTSLTTLILRFNNIE 179
             L  L  L  + +N++
Sbjct: 393 LGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 104 LLNMSL----FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL 159
           L+N           + L+ L  + N+    +      S   L  L+ L+L  N  +    
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNGLSFKGC 364

Query: 160 R--YLNTLTSLTTLILRFNNI 178
                   TSL  L L FN +
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGV 385

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
                ++F     L  LDLS  + E +    ++  F +L +L++LN+  N        + 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQI----SWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 163 NTLTSLTTLILRFNNIE 179
           N L SL+TL   FN IE
Sbjct: 518 NQLYSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           ++  +F     LQ L++S N    L        +  L  L  L+   NR   S     + 
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 165 LTSLTTLILRFNNI 178
             SL    L  N++
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           ++    L NL L+GN  +         SF  L  L+ L   + +        +  L +L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 170 TLILRFNNI 178
            L +  N I
Sbjct: 132 KLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL-RYLN 163
            +   F     L+NL     +   L         G L  LK LN+  N  +   L  Y +
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 164 TLTSLTTLILRFNNIE 179
            LT+L  + L +N I+
Sbjct: 151 NLTNLVHVDLSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F  F ELQ LDLS    E + +     ++  L  L  L L  N          + LTSL 
Sbjct: 52  FSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 170 TLILRFNNIE 179
            L+     + 
Sbjct: 108 NLVAVETKLA 117

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           + F   EELQ+LD   +  + + E     +F SL++L  L++               LTS
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 168 LTTLILRFNNI 178
           L TL +  N+ 
Sbjct: 450 LNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD 151
           + N        S  ++        L++LDLS N    +       +F  L++L+ L+   
Sbjct: 358 SRNALSFSGCCSYSDLGT----NSLRHLDLSFNGAIIMSA-----NFMGLEELQHLDFQH 408

Query: 152 NRFNDSILRY-LNTLTSLTTLILRFNNIE 179
           +            +L  L  L + + N +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTK 437

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 10/108 (9%)

Query: 76  RVMQLSLNKTTKFNDS--NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENK 133
             M L+        D   ++           L          L++L L+ N+    +   
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--- 344

Query: 134 TYDSFGSLKQLKILNLGDNRFNDSILRYLN--TLTSLTTLILRFNNIE 179
                 +L  L  L+L  N  + S     +     SL  L L FN   
Sbjct: 345 ---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
            ++  F+    +  + L+G   + L      +      + + L++   +           
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKYL------EDVPKHFKWQSLSIIRCQLKQFP---TLD 326

Query: 165 LTSLTTLILRFNNIE 179
           L  L +L L  N   
Sbjct: 327 LPFLKSLTLTMNKGS 341

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 22/118 (18%)

Query: 80  LSLNKTTKFNDSNYNLFYGGPSASLLNMS---------------LFYPFEELQNLDLSGN 124
            +LN    FN S  ++         + +                ++   E+++ + +  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 125 RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY---LNTLTSLTTLILRFNNIE 179
           +   +  +        LK L+ L+L +N   +  L+         SL TL+L  N++ 
Sbjct: 321 KVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           + +          LQ L L  +R   +      D+F SL  L+ L+L DN  +     + 
Sbjct: 39  TYIGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 163 NTLTSLTTLILRFNNI 178
             L+SL  L L  N  
Sbjct: 95  GPLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 91  SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLG 150
            N   F      S +    F     L  L++               S  S++ +  L L 
Sbjct: 131 GNVETF------SEIRRIDFAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLH 180

Query: 151 DNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            +     +  + + L+S+  L LR  N+ 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR-YLN 163
           L+ S F P   L+ L+L GN ++ L        F +L  L+ L +G+      I R    
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL---FPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 164 TLTSLTTLILRFNNIE 179
            LTSL  L ++  ++ 
Sbjct: 146 GLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
              +++LDLS N+   +          +   L++L L  +R N        +L SL  L 
Sbjct: 25  TAAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 173 LRFNNI 178
           L  N++
Sbjct: 81  LSDNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query: 76  RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMS------------LFYPFEELQNLDLSG 123
             + LS N   +    N       PS   L +S            +    + L +LD+S 
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 124 NRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
           N F  +      DS    ++++ LNL        +   +    +L  L +  NN++
Sbjct: 397 NTFHPMP-----DSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 3/77 (3%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           +L   SLF     LQ L +                F  L  L  L +      +   + L
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 163 NTLTSLTTLILRFNNIE 179
            ++  +  L L  +   
Sbjct: 169 KSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           S       LQ L +S N+ + L              L ++ +  N+         + LTS
Sbjct: 445 SFSLFLPRLQELYISRNKLKTL------PDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 168 LTTLILRFNNI 178
           L  + L  N  
Sbjct: 499 LQKIWLHTNPW 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           +  + F     L  LDL+  +   ++E    D+F S  +L  L L  N         L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 165 LTSLTTLILRFNNI 178
             +L  L      I
Sbjct: 104 PKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
             +  +     + L++L         +          + K L+ L LG N  +   L   
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 163 NTLTSLTTLILRFNNIE 179
                L  L  + N I 
Sbjct: 150 FPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F     L  L L+ N    + E     +    K LK L       +      L+   +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 170 TLILRFNNI 178
           +L L  N+I
Sbjct: 133 SLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
            + +  LF     LQ+L+L GN F      KT +S  +L +L+IL L     +       
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKT-NSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 163 NTLTSLTTLILRFNNIE 179
            +L  +  + L  N + 
Sbjct: 497 TSLKMMNHVDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 76  RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMS----------LFYPFEELQNLDLSGNR 125
           R + LS +     +  N            LN+S           F    +L+ LDL+  R
Sbjct: 353 RELDLSHDDIETSDCCN-LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 126 FEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            +          F +L  LK+LNL  +  + S  +  + L +L  L L+ N+  
Sbjct: 412 LKVKDAQ---SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           ++ + F+ F  LQ LDL+      L           L  LK L L  N+F +      + 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 165 LTSLTTLILRFNNI 178
             SLT L ++ N  
Sbjct: 324 FPSLTHLSIKGNTK 337

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
               + L+ S N    +       +F  L  L  L+L   +          +   L TL+
Sbjct: 32  PNSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 173 LRFNNI 178
           L  N +
Sbjct: 88  LTANPL 93

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 76  RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMS----------LFYPFEELQNLDLSGNR 125
           + + L  N   K N    N         +L +S           F   + + ++DLS NR
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 126 FEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
                     ++   LK +  LNL  N  +  +   L  L+   T+ LR N ++
Sbjct: 512 LTSSSI----EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 21/113 (18%)

Query: 80  LSLNKTTKFNDSNYNLFYGGPSASLLNMS-------------LFYPFEELQNLDLSGNRF 126
           LS +     ++    LF G P+   LN+                     L+ L LS    
Sbjct: 432 LSHSLLDISSE---QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 127 EGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
             +       +F SLK +  ++L  NR   S +  L+ L  +  L L  N+I 
Sbjct: 489 SSI----DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY- 161
             L       F  L +L + GN               +L+ L+ L+L  +    S     
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGT---GCLENLENLRELDLSHDDIETSDCCNL 370

Query: 162 -LNTLTSLTTLILRFNNIE 179
            L  L+ L +L L +N   
Sbjct: 371 QLRNLSHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
              +  + L++L L  N    +            ++LK+L+  +N  +      +++L  
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKL----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 168 LTTLILRFNN 177
            T L L  N 
Sbjct: 179 ATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLK--QLKILNLGDNRFNDSILRYLNTLTS 167
               + L          E +    +   F  L    ++ +NL  + F +      +  + 
Sbjct: 224 NSTIQSLWLGTFEDMDDEDI----SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279

Query: 168 LTTLILRFNNIE 179
           L  L L   ++ 
Sbjct: 280 LQELDLTATHLS 291

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 80  LSLNKTTKFNDSNYNLFYGGPSASLLNMS----------LFYPFEELQNLDLSGNRFEGL 129
           LS       N     +F       +LN++           FY  + LQ L+LS N    L
Sbjct: 273 LSHGFVFSLNS---RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 130 YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
           Y +    +F  L ++  ++L  N       +    L  L TL LR N + 
Sbjct: 330 YSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENK-TYDSFGSLKQLKILNLGDNRFNDSILRY 161
           S            L+ L L  N  +  +E +  +D F  L  L++L L  N  N      
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 162 LNTLTSLTTLILRFNNI 178
            + LT+L  L L  N +
Sbjct: 500 FSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
             L  S FY   ++  +DL  N    +       +F  L++L+ L+L DN         +
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAII----QDQTFKFLEKLQTLDLRDNALTT-----I 377

Query: 163 NTLTSLTTLILRFNNI 178
           + + S+  + L  N +
Sbjct: 378 HFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           +L  +        LQ L L+ NRF     ++T         L+ L LG+N    +    L
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQT---PSENPSLEQLFLGENMLQLAWETEL 471

Query: 163 NT-----LTSLTTLILRFNNIE 179
                  L+ L  L L  N + 
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           +  S F   E+LQ L+L         +    ++F +L  L+IL+LG ++           
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 165 LTSLTTLILRFNNIE 179
           L  L  L L F  + 
Sbjct: 96  LFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 101 SASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR 160
           S ++L    F   + L  LDLS N+   LY +    SFG L  LK ++   N+       
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 161 YLNTLT--SLTTLILRFNNI 178
            L  L   +L+   L  N++
Sbjct: 167 ELEPLQGKTLSFFSLAANSL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY-LNTLTSLTTLILR 174
            + L LS N    +       SF  L+QL++L LG      +I +     L +L  L L 
Sbjct: 26  TERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 175 FNNI 178
            + I
Sbjct: 82  SSKI 85

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-NTLTSLTTLILR 174
              + LS NR E L           +  L+IL L  NRF+        +   SL  L L 
Sbjct: 403 ANLIHLSENRLENL---DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 175 FNNIE 179
            N ++
Sbjct: 460 ENMLQ 464

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY- 161
            +   S+F     L  LD+S               F  L  L++L +  N F ++ L   
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 162 LNTLTSLTTLILRFNNIE 179
              L +LT L L    +E
Sbjct: 171 FTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
                 +F     L  LDLS  + E L       +F SL  L++LN+  N F        
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 163 NTLTSLTTLILRFNNIE 179
             L SL  L    N+I 
Sbjct: 220 KCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTT 170
                 L+L  N+ + L        F  L QL  L+L  N  +      +     TSL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 171 LILRFNNI 178
           L L FN +
Sbjct: 83  LDLSFNGV 90

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F   E+L++LD   +  + + E   +  F SL+ L  L++       +     N L+SL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 170 TLILRFNNI 178
            L +  N+ 
Sbjct: 154 VLKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
             L   +F    +L  L LS N     ++     S      LK L+L  N    ++    
Sbjct: 41  QSLPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 97

Query: 163 NTLTSLTTLILRFNNIE 179
             L  L  L  + +N++
Sbjct: 98  LGLEQLEHLDFQHSNLK 114

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ L++  N+   +          +L QL  L L +N+  +  +  +  LT+LTTL L  
Sbjct: 267 LKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 176 NNIE 179
           N+I 
Sbjct: 321 NHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L ++ ++ + +          +L  L  L+L  N+  D  +  L +LTSL       
Sbjct: 157 LNYLTVTESKVKDV------TPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV 208

Query: 176 NNIE 179
           N I 
Sbjct: 209 NQIT 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ L+L+GN+   +          +L +L  L +G N+   + +  L  LT+L  L L  
Sbjct: 68  LEYLNLNGNQITDI------SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

Query: 176 NNIE 179
           +NI 
Sbjct: 120 DNIS 123

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L++  N+   +      ++   L +LK+LN+G N+ +D  +  LN L+ L +L L  
Sbjct: 245 LTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 176 NNIE 179
           N + 
Sbjct: 297 NQLG 300

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L +L L+ N+ E +          SL  L       N+  D  +  +  +T L +L +  
Sbjct: 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN 230

Query: 176 NNIE 179
           N I 
Sbjct: 231 NKIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           S+ ++      E +  L ++G +   +           L  L+ LNL  N+  D  +  L
Sbjct: 33  SVTDVVTQEELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITD--ISPL 84

Query: 163 NTLTSLTTLILRFNNIE 179
           + L  LT L +  N I 
Sbjct: 85  SNLVKLTNLYIGTNKIT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L       N+   +          ++ +L  L +G+N+  D     L  L+ LT L +  
Sbjct: 201 LHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGT 252

Query: 176 NNIE 179
           N I 
Sbjct: 253 NQIS 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L +L +  N+   L          +L QL  L +G N+ +D  +  +  LT L  L +  
Sbjct: 223 LNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 176 NNIE 179
           N I 
Sbjct: 275 NQIS 278

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           + +L+L  N               ++  L  L + +++  D     +  LT L +L L +
Sbjct: 134 MYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNY 186

Query: 176 NNIE 179
           N IE
Sbjct: 187 NQIE 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             +L NL +  N+   +       +  +L  L+ L L ++  +D  +  L  LT + +L 
Sbjct: 87  LVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLN 138

Query: 173 LRFNNI 178
           L  N+ 
Sbjct: 139 LGANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLIL 173
            +L +L L+ N+          +  G L  L  L L  N   D  +R L +L+ + +   
Sbjct: 287 SQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF 340

Query: 174 RFNNIE 179
               I+
Sbjct: 341 ANQVIK 346

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           SL      ++ LDLSGN    +             +L++LNL  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 168 LTTLILRFNNIE 179
           L TL L  N ++
Sbjct: 82  LRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           ++ +   PF +L+ L+LS N               SL  L+ L+L +N      ++ L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNY-----VQELLV 97

Query: 165 LTSLTTLILRFNNIE 179
             S+ TL    NNI 
Sbjct: 98  GPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTL 171
            +  +N+ L+ N+   L +       G   +++ L+L  N  +  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 172 ILRFNNIE 179
            L++N I 
Sbjct: 175 NLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLIL 173
              +   ++ +  +    +       S   +K L+L  N  +      L   T L  L L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 174 RFNNI 178
             N +
Sbjct: 66  SSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ LDLS N+   +        F S   +  ++L +N+    I + L    +L    LR 
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 176 NNIE 179
           N   
Sbjct: 247 NGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
                 +Q LDL  N  + +      +   S   L+ LNL  N      ++       L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 170 TLILRFNNIE 179
           TL L  N + 
Sbjct: 195 TLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           ++ L  + N    +       S    +  K + L +N+            + +  L L+ 
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 176 NNIE 179
           N I+
Sbjct: 154 NEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           ++    L    + L++L+L  N    +             +LK L+L  N+    +    
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 163 NTLTSLTTLILRFNNIE 179
            +   +T + LR N + 
Sbjct: 211 QSAAGVTWISLRNNKLV 227

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 94  NLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153
           NL       SL  M       +L  L+   N+ EG        +FGS  +L  LNL  N+
Sbjct: 316 NLKTFPVETSLQKMK------KLGMLECLYNQLEGKLP-----AFGSEIKLASLNLAYNQ 364

Query: 154 FNDSILRYLNTLTSLTTLILRFNNIE 179
             +    +      +  L    N ++
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLK 390

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 91  SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLG 150
            N  +           ++     E++Q + +  N  +         S   +K+L +L   
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE---TSLQKMKKLGMLECL 338

Query: 151 DNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            N+     L    +   L +L L +N I 
Sbjct: 339 YNQLE-GKLPAFGSEIKLASLNLAYNQIT 366

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 116 LQNLDLSGNRFEGLYENKTY---DSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
           +  +D S N    +          +      +  +NL +N+ +       +T + L+++ 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 173 LRFNNIE 179
           L  N + 
Sbjct: 464 LMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 93  YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTY---DSFGSLKQLKILNL 149
            N     P       S       L +++L GN    + +N      ++F +   L  ++L
Sbjct: 442 NNQISKFPKELFSTGSP------LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 150 GDNRFN---DSILRYLNTLTSLTTLILRFNNIE 179
             N+     D       TL  L  + L +N+  
Sbjct: 496 RFNKLTKLSDDFR--ATTLPYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 20/126 (15%)

Query: 58  SSDCCD--DWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEE 115
           + +        GV  ++  R V  LSL               G    ++  ++      E
Sbjct: 63  NKELDMWGAQPGVSLNSNGR-VTGLSLE---------GFGASGRVPDAIGQLT------E 106

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL--NTLTSLTTLIL 173
           L+ L L  +  +            +    +        +  + + Y      + L    +
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 174 RFNNIE 179
             +  +
Sbjct: 167 NSDPQQ 172

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILR 174
           L +L+L+ N+   +  N      G  +Q++ L+   N+      +    +++ ++ +   
Sbjct: 355 LASLNLAYNQITEIPAN----FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 175 FNNIE 179
           +N I 
Sbjct: 411 YNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT--- 164
           +     E+++NL  + N+ + +          S+  +  ++   N       +  +    
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIF---DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 165 ----LTSLTTLILRFNNI 178
                 +++++ L  N I
Sbjct: 428 TPFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD------NRFNDSILRYLNTLTSLT 169
           L  +DLS N F             +   LK   + +      NR        +    SLT
Sbjct: 515 LVGIDLSYNSFSKFPT-----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 170 TLILRFNNIE 179
            L +  N+I 
Sbjct: 570 QLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 12/105 (11%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYD---------SFGSLK 142
             + F                 ++ +  DL  +  + L + + Y+            +L 
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 143 QLKILNLGDNRF--------NDSILRYLNTLTSLTTLILRFNNIE 179
           +++++N+  NR         +   L        +  + + +NN++
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 7/77 (9%)

Query: 102 ASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY 161
              LN S    F      D  GNR    +     +       L  L +G N         
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWP----EGITLCPSLTQLQIGSNDIRKVN--- 582

Query: 162 LNTLTSLTTLILRFNNI 178
                +++ L ++ N  
Sbjct: 583 EKITPNISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 15/78 (19%)

Query: 116 LQNLDLSGNRFEG-----------LYENKTY----DSFGSLKQLKILNLGDNRFNDSILR 160
           L+   +  + F                 + Y      + +LK L  + + +      +  
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 161 YLNTLTSLTTLILRFNNI 178
           +L  L  +  + +  N  
Sbjct: 268 FLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L +  N    +       +      + +L++ DN      L Y+         +L +
Sbjct: 568 LTQLQIGSNDIRKV-------NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

Query: 176 NNIE 179
           +  +
Sbjct: 621 DKTQ 624

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
              +++L ++             +    L  L+ L +         +  L+ LTSLT L 
Sbjct: 65  AHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 173 LRFNNIE 179
           +  +  +
Sbjct: 119 ISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ L + G        +    +   L  L +L++  +  +DSIL  +NTL  + ++ L +
Sbjct: 90  LERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 176 NN 177
           N 
Sbjct: 146 NG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           + ++DLS N               +L +LK LN+  +  +D   R +     L  L    
Sbjct: 138 VNSIDLSYNG-----AITDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS 190

Query: 176 NNI 178
             I
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  + L+      L              +K L + +    +     ++ L++L  L +  
Sbjct: 46  LTYITLANINVTDL------TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 176 NNI 178
            ++
Sbjct: 98  KDV 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           SL      ++ LDLSGN    +             +L++LNL  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 168 LTTLILRFNNIE 179
           L TL L  N ++
Sbjct: 82  LRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           S ++ +   PF +L+ L+LS N               SL  L+ L+L +N      ++ L
Sbjct: 47  SQISAADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNY-----VQEL 95

Query: 163 NTLTSLTTLILRFNNIE 179
               S+ TL    NNI 
Sbjct: 96  LVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTL 171
            +  +N+ L+ N+   L +       G   +++ L+L  N  +  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 172 ILRFNNIE 179
            L++N I 
Sbjct: 175 NLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
             +   ++ +  +    +       S   +K L+L  N  +      L   T L  L L 
Sbjct: 11  RYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 175 FNNIE 179
            N + 
Sbjct: 67  SNVLY 71

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ LDLS N+   +        F S   +  ++L +N+    I + L    +L    LR 
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 176 NNIE 179
           N   
Sbjct: 247 NGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           ++ L  + N    +       S    +  K + L +N+            + +  L L+ 
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 176 NNIE 179
           N I+
Sbjct: 154 NEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
                 +Q LDL  N  + +      +   S   L+ LNL  N      ++       L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 170 TLILRFNNIE 179
           TL L  N + 
Sbjct: 195 TLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           ++    L    + L++L+L  N    +             +LK L+L  N+    +    
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 163 NTLTSLTTLILRFNNIE 179
            +   +T + LR N + 
Sbjct: 211 QSAAGVTWISLRNNKLV 227

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 13/100 (13%)

Query: 80  LSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFG 139
           ++ N+         +                    ++Q   +  N  E    +    S  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGP--------KIQIFYMGYNNLEEFPAS---ASLQ 570

Query: 140 SLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
            + +L +L+   N+     L    T   LT L L +N IE
Sbjct: 571 KMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENK---TYDSFGSLKQLKILN 148
           +YN     P+      S       +  + LS N    + EN       ++ +   L  ++
Sbjct: 681 SYNEIQKFPTELFATGS------PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 149 LGDNRFN---DSILRYLNTLTSLTTLILRFNNIE 179
           L  N+     D       TL  L+ + + +N   
Sbjct: 735 LRFNKLTSLSDDFR--ATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  LD   N+   L      ++FG+  +L  L L  N+  +    +      +  L    
Sbjct: 575 LGLLDCVHNKVRHL------EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 176 NNIE 179
           N ++
Sbjct: 629 NKLK 632

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 15/79 (18%)

Query: 116 LQNLDLSGNRFEGL---------------YENKTYDSFGSLKQLKILNLGDNRFNDSILR 160
           LQ +  + + F                         S+ +LK L  + L +      +  
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 161 YLNTLTSLTTLILRFNNIE 179
           +L  L  L +L +  N   
Sbjct: 510 FLYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL------GDNRFNDSILRYLNTLTSLT 169
           L N+D+S N F             +  QLK   +        NR        + T  SL 
Sbjct: 755 LSNMDVSYNCFSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 170 TLILRFNNIE 179
            L +  N+I 
Sbjct: 810 QLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 19/100 (19%)

Query: 89  NDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILN 148
            +S+Y   Y     S  N+       +L +++L           +  D    L +L+ LN
Sbjct: 472 ANSDYAKQYENEELSWSNLK------DLTDVELYNCPNMT----QLPDFLYDLPELQSLN 521

Query: 149 LGDNRFND---------SILRYLNTLTSLTTLILRFNNIE 179
           +  NR             +    +T   +    + +NN+E
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 116 LQNLDLSGNRFEGLYENKTYD-SFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
           + ++D S N+      N +             + L  N           T + ++T+IL 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 175 FNNIE 179
            N + 
Sbjct: 706 NNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF-----NDSILRYL 162
                 ++++ L  S N+ + +       +  S+  +  ++   N+      N S     
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIF---NAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 163 NTLTSLTTLILRFNNIE 179
               + +T+ L +N I+
Sbjct: 670 YKGINASTVTLSYNEIQ 686

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 11/79 (13%)

Query: 102 ASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY 161
              LN S    F      D  GNR    +         +   L  L +G N      +R 
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSND-----IRK 820

Query: 162 L--NTLTSLTTLILRFNNI 178
           +       L  L +  N  
Sbjct: 821 VDEKLTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 90  DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL 149
           +   +++   P   L N         +  L L+G   +G       D+ G L +LK+L+ 
Sbjct: 305 NKELDMWGDQPGVDLDNNG------RVTGLSLAGFGAKGR----VPDAIGQLTELKVLSF 354

Query: 150 GDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           G +    S   + +   +      R + I
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRI 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 104 LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLN 163
           L + +    +  L  +DLS N  E +     Y  F  +++L+ L + +NR   ++  Y  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 164 TLTSLTTLILRFNNIE 179
            + +L  L L  N++ 
Sbjct: 293 PIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 89  NDSNYNLFYGGPSASLLNMSLFYPFEE-----LQNLDLSGNRFEGLYENKTYDSFGSLKQ 143
           ++  Y+  +      +    +++ FE+      + +    +    L          S +Q
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA----LLDSFRQ 70

Query: 144 LKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
           +++LNL D +  +          ++  L + FN I 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 6/67 (8%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             EL  L L  N               +   L  ++L  N     +      +  L  L 
Sbjct: 225 NVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 173 LRFNNIE 179
           +  N + 
Sbjct: 279 ISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           ++   F     +Q L +  N    L        F ++  L +L L  N  +       + 
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 165 LTSLTTLILRFNNIE 179
              LTTL +  NN+E
Sbjct: 140 TPKLTTLSMSNNNLE 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           L   +F+   +L  L +S N  E + +    D+F +   L+ L L  NR    +   L+ 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLT-HVD--LSL 184

Query: 165 LTSLTTLILRFNNIE 179
           + SL    + +N + 
Sbjct: 185 IPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 12/74 (16%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           +    F     LQNL LS NR   +           +  L   N+  N      L  L  
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNL-----LSTLAI 203

Query: 165 LTSLTTLILRFNNI 178
             ++  L    N+I
Sbjct: 204 PIAVEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
             P   L+ LDLS N    +  N          +L+ L L  N    ++   L+T  +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSIV-TL--KLSTHHTLK 342

Query: 170 TLILRFNNIE 179
            L L  N+ +
Sbjct: 343 NLTLSHNDWD 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 104 LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLN 163
           L + +    +  L  +DLS N  E +     Y  F  +++L+ L + +NR   ++  Y  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 164 TLTSLTTLILRFNNIE 179
            + +L  L L  N++ 
Sbjct: 299 PIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 79  QLSLNKTTKFNDSN--YNLFYGGPSASLLNMSLFYPFEE-----LQNLDLSGNRFEGLYE 131
                   K  DSN  Y+  +      +    +++ FE+      + +    +    L  
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 132 NKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
                   S +Q+++LNL D +  +          ++  L + FN I 
Sbjct: 69  A----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
             L   +F     L  L L  N    L        F +  +L  L++ +N          
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 163 NTLTSLTTLILRFNNIE 179
              TSL  L L  N + 
Sbjct: 168 QATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 6/67 (8%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             EL  L L  N               +   L  ++L  N     +      +  L  L 
Sbjct: 231 NVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 173 LRFNNIE 179
           +  N + 
Sbjct: 285 ISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           ++   F     +Q L +  N    L        F ++  L +L L  N  +       + 
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 165 LTSLTTLILRFNNIE 179
              LTTL +  NN+E
Sbjct: 146 TPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           L   +F+   +L  L +S N  E + ++    +F +   L+ L L  NR        L+ 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTHVD---LSL 190

Query: 165 LTSLTTLILRFNNIE 179
           + SL    + +N + 
Sbjct: 191 IPSLFHANVSYNLLS 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 7e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILR 174
           L+ L  S N  E +      D   +L +L+ L L +NR    + ++ L +   L  L L+
Sbjct: 488 LEVLQASDNALENV------DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 175 FNNI 178
            N++
Sbjct: 542 GNSL 545

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTT 170
            + LQ L +  N    + ++     F  L Q+ ++ LG N    S +       +  L+ 
Sbjct: 120 PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 171 LILRFNNI 178
           + +   NI
Sbjct: 176 IRIADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             +   LDL  N+   + +      F +LK L  L L +N+ +         L  L  L 
Sbjct: 51  PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106

Query: 173 LRFNNIE 179
           L  N ++
Sbjct: 107 LSKNQLK 113

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
                 L  L LS N    +       S  +   L+ L+L +N+    +   L     + 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266

Query: 170 TLILRFNNIE 179
            + L  NNI 
Sbjct: 267 VVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-- 162
           +    F   + L  L L  N+   +       +F  L +L+ L L  N+     L+ L  
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQ-----LKELPE 117

Query: 163 NTLTSLTTLILRFNNIE 179
               +L  L +  N I 
Sbjct: 118 KMPKTLQELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 4/67 (5%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
              L  L L GN+   +       S   L  L  L L  N  +      L     L  L 
Sbjct: 191 PPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 173 LRFNNIE 179
           L  N + 
Sbjct: 247 LNNNKLV 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
            L+ + +F     L  LD+S N+   L +      F  L  LK L +GDN       R  
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 163 NTLTSLTTLILRFNNIE 179
           + L SL  L L   N+ 
Sbjct: 149 SGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 17/114 (14%)

Query: 76  RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMS----------LFYPFEELQNLDLSGNR 125
           + +++  N     +      F G  S   L +                  L  L L    
Sbjct: 131 KSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 126 FEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
              + +     SF  L +LK+L +    + D++        +LT+L +   N+ 
Sbjct: 188 INAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           LN   F  F  L+ L+L+ N    +       +F +L  L+ L L  NR     L     
Sbjct: 47  LNQDEFASFPHLEELELNENIVSAVEP----GAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102

Query: 165 LTSLTTLILRFNNIE 179
           L++LT L +  N I 
Sbjct: 103 LSNLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             E + LDL  NR + L +    D F S   L+ L L +N  +       N L +L TL 
Sbjct: 31  PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 173 LRFNNI 178
           LR N +
Sbjct: 87  LRSNRL 92

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L +L ++      +     Y +   L  L+ LNL  N  +      L+ L  L  + L  
Sbjct: 226 LTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 176 NNIE 179
             + 
Sbjct: 282 GQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSL 168
                  L+ L+LS N    +  +        L +L+ + L   +           L  L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGS----MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 169 TTLILRFNNIE 179
             L +  N + 
Sbjct: 299 RVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           S+ +    LQ + L G +   +       +F  L  L++LN+  N+         +++ +
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 168 LTTLILRFNNI 178
           L TLIL  N +
Sbjct: 322 LETLILDSNPL 332

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNR--------FEGLYE---------NK----TYDSFGSL 141
           +++    F    +L+ L L  N         F  +            K    +  +F  L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
             LK LNLG     D  +  L  L  L  L +  N+  
Sbjct: 196 FNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT-----LTS 167
               + L+L  N  + +  +    +F  L  L++L LG N      +R +       L S
Sbjct: 74  PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNS-----IRQIEVGAFNGLAS 124

Query: 168 LTTLILRFNNI 178
           L TL L  N +
Sbjct: 125 LNTLELFDNWL 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           ++ +M    P   L+ L++SGN F  +       SF  L  LK L + +++     +  +
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQ-----VSLI 257

Query: 163 -----NTLTSLTTLILRFNNIE 179
                + L SL  L L  NN+ 
Sbjct: 258 ERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 14/79 (17%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           +    F     L+ L L  N    +       +F  L  L  L L DN      L  + +
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQI----EVGAFNGLASLNTLELFDNW-----LTVIPS 140

Query: 165 -----LTSLTTLILRFNNI 178
                L+ L  L LR N I
Sbjct: 141 GAFEYLSKLRELWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
             + +  F     L  L+L  N    +       +F  L +L+ L L +N          
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPS----GAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 163 NTLTSLTTLILRFNN 177
           N + SL  L L    
Sbjct: 168 NRVPSLMRLDLGELK 182

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ LD+S N+   +           L  L+ L   +N+ +D  +  L  LT+L  L L  
Sbjct: 179 LERLDISSNKVSDI------SVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 230

Query: 176 NNIE 179
           N ++
Sbjct: 231 NQLK 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  ++ S N+   +          +L +L  + + +N+  D  +  L  LT+LT L L  
Sbjct: 70  LTQINFSNNQLTDI------TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121

Query: 176 NNIE 179
           N I 
Sbjct: 122 NQIT 125

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L ++ ++ N+   +          +L  L  L L +N+  D     L  LT+L  L L  
Sbjct: 92  LVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSS 143

Query: 176 NNI 178
           N I
Sbjct: 144 NTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
            L NL+L+ N+ E +          +LK L  L L  N  +D  +  +++LT L  L   
Sbjct: 288 ALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 175 FNNIE 179
            N + 
Sbjct: 340 NNKVS 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           LQ L    N+   +       S  +L  +  L+ G N+ +D  L  L  LT +T L L  
Sbjct: 333 LQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 384

Query: 176 NNIE 179
               
Sbjct: 385 QAWT 388

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L L  N    +          SL +L+ L   +N+ +D  +  L  LT++  L    
Sbjct: 311 LTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 176 NNI 178
           N I
Sbjct: 363 NQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L L+GN+ + +       +  SL  L  L+L +N+ ++     L+ LT LT L L  
Sbjct: 223 LDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGA 274

Query: 176 NNIE 179
           N I 
Sbjct: 275 NQIS 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
            L ++        L +LDL+ N+   L           L +L  L LG N+ ++  +  L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISN--ISPL 283

Query: 163 NTLTSLTTLILRFNNIE 179
             LT+LT L L  N +E
Sbjct: 284 AGLTALTNLELNENQLE 300

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L L  N+   +           L  L  L L +N+  D  +  ++ L +LT L L F
Sbjct: 267 LTELKLGANQISNI------SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 318

Query: 176 NNIE 179
           NNI 
Sbjct: 319 NNIS 322

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L++L  + N+   +         G L  L  L+L  N+  D  +  L +LT+LT L L  
Sbjct: 201 LESLIATNNQISDI------TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

Query: 176 NNIE 179
           N I 
Sbjct: 253 NQIS 256

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
            +++  L       + +      D    L  L  +N  +N+  D  +  L  LT L  ++
Sbjct: 45  LDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDIL 96

Query: 173 LRFNNIE 179
           +  N I 
Sbjct: 97  MNNNQIA 103

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L L  N+   +      D   +L  L  L L  N  +D  +  L+ LTSL  L    
Sbjct: 114 LTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG- 164

Query: 176 NNI 178
           N +
Sbjct: 165 NQV 167

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             E     L               S   L Q+  L           +  +  L +LT + 
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 173 LRFNNIE 179
              N + 
Sbjct: 75  FSNNQLT 81

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L+LS N    +       +   L  L+ L+ G+     + L+ L  LT+L  L +  
Sbjct: 136 LNRLELSSNTISDI------SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISS 186

Query: 176 NNI 178
           N +
Sbjct: 187 NKV 189

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 103 SLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY 161
             +    F     L+ LDL    R   + E     +F  L  L+ LNL      +  +  
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMCNLRE--IPN 202

Query: 162 LNTLTSLTTLILRFNNIE 179
           L  L  L  L L  N++ 
Sbjct: 203 LTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
               + L+L  N+ + +  N    SF  L+ L+IL L  N      +   N L +L TL 
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 173 LRFNNI 178
           L  N +
Sbjct: 119 LFDNRL 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 14/80 (17%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           + ++ F     L+ L LS N    +       +F  L  L  L L DNR     L  +  
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTI----EIGAFNGLANLNTLELFDNR-----LTTIPN 129

Query: 165 -----LTSLTTLILRFNNIE 179
                L+ L  L LR N IE
Sbjct: 130 GAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
             P  +L  LDLSGN    +       SF  L  L+ L +  ++         + L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 170 TLILRFNNIE 179
            + L  NN+ 
Sbjct: 259 EINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F     LQ L +  ++ + +  N    +F +L+ L  +NL  N            L  L 
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERN----AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 170 TLILRFN 176
            + L  N
Sbjct: 283 RIHLHHN 289

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR--YLNTLTSLTTLI 172
            L  L L  N+F  L       +F  L  L++L L     + ++L   +   LTSL  L+
Sbjct: 80  SLIILKLDYNQFLQL----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 173 LRFNNIE 179
           LR NNI+
Sbjct: 136 LRDNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
           S+F  F +L+ L L+ N    + +N    +F  L  L  LNL  N       R    L  
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 168 LTTLILRFNNIE 179
           L  L L +N+I 
Sbjct: 349 LEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F+    L  L+LS N    +        F +L +L++L+L  N       +    L +L 
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

Query: 170 TLILRFNNIE 179
            L L  N ++
Sbjct: 375 ELALDTNQLK 384

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
             ++ + F+    L  L L     + L        F  L  L+ L L DN          
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 163 NTLTSLTTLILRFNNIE 179
             L +LT L L  N I 
Sbjct: 150 RDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSL 168
            F     L +L L GNR   + E     +F  L  L  L L  NR           L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 169 TTLILRFNNIE 179
            TL L  NN+ 
Sbjct: 204 MTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           S +  + F     L  L L  N    +       +F  L  L+ L+L DN    + LR +
Sbjct: 45  SHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDN----AQLRSV 96

Query: 163 NT-----LTSLTTLILRFNNIE 179
           +      L  L TL L    ++
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
               Q + L GNR   +       SF + + L IL L  N            L  L  L 
Sbjct: 31  PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 173 LRFNN 177
           L  N 
Sbjct: 87  LSDNA 91

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLN 163
           L++S+F   +EL+ LDLS N+   +       S      LK L+L  N F+   I +   
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKI-------SCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 164 TLTSLTTLILRFNNI 178
            ++ L  L L   ++
Sbjct: 113 NMSQLKFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 84  KTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQ 143
           K    +    ++F    S       ++  F  +   + + +    ++          +  
Sbjct: 276 KALSIHQVVSDVFGFPQS------YIYEIFSNMNIKNFTVSGTRMVHML----CPSKISP 325

Query: 144 LKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
              L+  +N   D++      LT L TLIL+ N ++
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
            +P   L++LDLS N F+ L   K    FG++ QLK L L       S +  +  L    
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKE---FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 170 TLILRFNNI 178
            L++     
Sbjct: 143 VLLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTS 167
            +    + LQ LD+S N    +  ++        K L  LN+  N   D+I R L     
Sbjct: 368 EMTTQMKSLQQLDISQNS---VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 168 LTTLILRFNNIE 179
           +  L L  N I+
Sbjct: 423 IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-- 162
           L  S      +L+ L +S NR + L        F   ++L+ L+L  N+     L  +  
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNK-----LVKISC 86

Query: 163 NTLTSLTTLILRFNNI 178
           +   +L  L L FN  
Sbjct: 87  HPTVNLKHLDLSFNAF 102

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
              + +L  L L  N+   +       S   L  L+ L+L +N+    +   L  L  L 
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQ 267

Query: 170 TLILRFNNIE 179
            + L  NNI 
Sbjct: 268 VVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 26/89 (29%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR----------FNDSILRYL 162
              L  L +  NR   + +      F  L+ +  + +G N           F+   L YL
Sbjct: 122 PSSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 163 ------------NTLTSLTTLILRFNNIE 179
                       +   +L  L L  N I+
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             +   LDL  N    L ++     F  L+ L  L L +N+ +    +  + L  L  L 
Sbjct: 53  SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108

Query: 173 LRFNNIE 179
           +  N++ 
Sbjct: 109 ISKNHLV 115

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
            E L  L L  N+ + +             +L  L LG N+        L+ L +L  L 
Sbjct: 192 PETLNELHLDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 173 LRFNNIE 179
           L  N + 
Sbjct: 248 LDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL--NTLTSLTTLIL 173
           L  L L  N+   ++E     +F  L++L+ L +  N      L  +  N  +SL  L +
Sbjct: 80  LYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNH-----LVEIPPNLPSSLVELRI 130

Query: 174 RFNNI 178
             N I
Sbjct: 131 HDNRI 135

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
              +  L L+GN+   +          +LK L  L L +N+  D  L  L  L  L +L 
Sbjct: 64  LPNVTKLFLNGNKLTDI------KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLS 115

Query: 173 LRFNNIE 179
           L  N I 
Sbjct: 116 LEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L++L L  N    +      +    L QL+ L LG+N+  D  +  L+ LT L TL L  
Sbjct: 111 LKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED 162

Query: 176 NNIE 179
           N I 
Sbjct: 163 NQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
             +L++L L  N+   +           L +L  L+L DN+ +D  +  L  LT L  L 
Sbjct: 130 LPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLY 181

Query: 173 LRFNNIE 179
           L  N+I 
Sbjct: 182 LSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
           F E    +L               +   L  +  +   ++      ++ +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 173 LRFNNIE 179
           L  N + 
Sbjct: 72  LNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 104 LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLN 163
           L ++      + L  L L  N+ + L       S   LK+LK L+L  N  +D  +  L 
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISD--INGLV 128

Query: 164 TLTSLTTLILRFNNIE 179
            L  L +L L  N I 
Sbjct: 129 HLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
              +  +  + +  + +           L  +  L L  N+  D  ++ L  L +L  L 
Sbjct: 42  LNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLF 93

Query: 173 LRFNNIE 179
           L  N I+
Sbjct: 94  LDENKIK 100

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 106 NMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTL 165
           +++      ++  L+LSGN  + +       +   L+ +K L+L   +  D  +  L  L
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITD--VTPLAGL 128

Query: 166 TSLTTLILRFNNIE 179
           ++L  L L  N I 
Sbjct: 129 SNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 106 NMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTL 165
           N+S     + ++ LDL+  +   +           L  L++L L  N+  +  +  L  L
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITN--ISPLAGL 150

Query: 166 TSLTTLILRFNNIE 179
           T+L  L +    + 
Sbjct: 151 TNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           LQ L L  N+   +           L  L+ L++G+ + +D  L  L  L+ LTTL    
Sbjct: 131 LQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADD 182

Query: 176 NNIE 179
           N I 
Sbjct: 183 NKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           ++ +       + +  L   G     +      +    L  L  L L DN+  D  L  L
Sbjct: 30  NVTDTVTQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITD--LAPL 81

Query: 163 NTLTSLTTLILRFNNIE 179
             LT +T L L  N ++
Sbjct: 82  KNLTKITELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           LQ L +   +   L          +L +L  L   DN+ +D  +  L +L +L  + L+ 
Sbjct: 153 LQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 176 NNIE 179
           N I 
Sbjct: 205 NQIS 208

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLIL 173
            L+ L ++ NR   + E        +L  L  L L +N   +   L  L +L SLT L +
Sbjct: 65  RLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 174 RFNNI 178
             N +
Sbjct: 121 LRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSL 168
           L    ++   +D S N    L      D F  L++LK L + +NR           L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 169 TTLILRFNNIE 179
           T LIL  N++ 
Sbjct: 91  TELILTNNSLV 101

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR---FNDSILRYLNTLT 166
           F   + L+ L L  N    +  N    +F  + QL+ L L  N+   F   +++  N L 
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 167 SLTTLILRFNNIE 179
            L  L L  N ++
Sbjct: 164 KLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT----- 164
                 L +L LS N    +      ++F  +  L+ L+L  N      L  L+      
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISS----EAFVPVPNLRYLDLSSNH-----LHTLDEFLFSD 110

Query: 165 LTSLTTLILRFNNIE 179
           L +L  L+L  N+I 
Sbjct: 111 LQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F    +LQ L LS N+       +       L +L +L+L  N+     L  L  L +  
Sbjct: 132 FEDMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 170 TLILRFNN 177
              L  +N
Sbjct: 191 KNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 13/70 (18%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT-----LTSLT 169
               LDLS N    L       +   L  L  L L  N      L ++++     + +L 
Sbjct: 40  YTALLDLSHNNLSRLRAE---WTPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPNLR 91

Query: 170 TLILRFNNIE 179
            L L  N++ 
Sbjct: 92  YLDLSSNHLH 101

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 3/79 (3%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN---DSIL 159
              +      F  L  LDLS N   G     +         L++L L +           
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 160 RYLNTLTSLTTLILRFNNI 178
                   L  L L  N++
Sbjct: 222 ALAAARVQLQGLDLSHNSL 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 20/114 (17%)

Query: 76  RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMS-----------LFYPFEELQNLDLSGN 124
           +V+ L        +     L         L++S                 +L +L+LS  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 125 RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
             + +         G   +L +L+L  NR +       + L  +  L L+ N  
Sbjct: 264 GLKQV-------PKGLPAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 101 SASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR 160
           + S +  +L     +LQ LDLS N            S     QL  LNL        + +
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGL-KQVPK 270

Query: 161 YLNTLTSLTTLILRFNNIE 179
            L     L+ L L +N ++
Sbjct: 271 GL--PAKLSVLDLSYNRLD 287

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
           F  L+ L L       +       +   L +LK L L +NR    +      L +LT L 
Sbjct: 48  FVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 173 LRFNNIE 179
           L  N ++
Sbjct: 102 LSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRY 161
            L+++S      +L+ L+LS NR  G  +         L  L  LNL  N+  D S L  
Sbjct: 60  GLISVSNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 162 LNTLTSLTTLILRFN 176
           L  L  L +L L   
Sbjct: 116 LKKLECLKSLDLFNC 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
            +++   P+  L  L+L       L         G+L  L  L+L  N+   S+     T
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTKL------QVDGTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 165 LTSLTTLILRFNNIE 179
           L +LT L + FN + 
Sbjct: 99  LPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
           ELQ L L GN  + L             +L+ L+L +N   +     LN L +L TL+L+
Sbjct: 125 ELQELYLKGNELKTLPP----GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 175 FNNIE 179
            N++ 
Sbjct: 181 ENSLY 185

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
           FEEL+ L         +       +   L +LK L L DNR +  +        +LT L 
Sbjct: 41  FEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 173 LRFNNIE 179
           L  N I+
Sbjct: 95  LSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRY 161
            L +++      +L+ L+LS NR  G  E            L  LNL  N+  D S +  
Sbjct: 53  GLTSIANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 162 LNTLTSLTTLILRFNNI 178
           L  L +L +L L    +
Sbjct: 109 LKKLENLKSLDLFNCEV 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILR 174
           L+ L +S N+   L           L  L++L + +N+  +   +  L  L  L  L+L 
Sbjct: 95  LEELWISYNQIASL------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

Query: 175 FNNI 178
            N +
Sbjct: 149 GNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 13/68 (19%)

Query: 115 ELQNLDLSGNR---FEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTL 171
            L+ L L  N     E L              L+ L +  N+     L  +  L +L  L
Sbjct: 71  NLRILSLGRNLIKKIENLDAV--------ADTLEELWISYNQIAS--LSGIEKLVNLRVL 120

Query: 172 ILRFNNIE 179
            +  N I 
Sbjct: 121 YMSNNKIT 128

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 18/80 (22%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSI--LRYLN------- 163
             EL+ L++SGN+   L           L +L I +            L  L        
Sbjct: 80  PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134

Query: 164 ----TLTSLTTLILRFNNIE 179
                   L  L +  N + 
Sbjct: 135 SLPVLPPGLQELSVSDNQLA 154

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
           +L++L L  N    +      +    L QL+ L LG+N+  D  +  L+ LT L TL L 
Sbjct: 113 KLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 175 FNNIE 179
            N I 
Sbjct: 165 DNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 106 NMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTL 165
           ++      + L  L L  N+       K   S   LK+LK L+L  N  +D  +  L  L
Sbjct: 82  DIKPLANLKNLGWLFLDENKV------KDLSSLKDLKKLKSLSLEHNGISD--INGLVHL 133

Query: 166 TSLTTLILRFNNIE 179
             L +L L  N I 
Sbjct: 134 PQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
           +L++L L  N+   +           L +L  L+L DN+ +D  +  L  LT L  L L 
Sbjct: 135 QLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186

Query: 175 FNNIE 179
            N+I 
Sbjct: 187 KNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
           F E    +L               +   L  +  +   ++      ++ +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 173 LRFNNIE 179
           L  N + 
Sbjct: 75  LNGNKLT 81

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           S+ +         +  +  + +  + +           L  +  L L  N+  D  ++ L
Sbjct: 35  SVTDAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPL 86

Query: 163 NTLTSLTTLILRFNNIE 179
             L +L  L L  N ++
Sbjct: 87  ANLKNLGWLFLDENKVK 103

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 13/76 (17%)

Query: 116 LQNLDLSGNRF---------EGLYENKTYDSFGSLKQLKILNLGDNRFND----SILRYL 162
           L++L L  N             L E        +   L+ +  G NR  +       +  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 163 NTLTSLTTLILRFNNI 178
            +   L T+ +  N I
Sbjct: 184 QSHRLLHTVKMVQNGI 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 23/77 (29%)

Query: 116 LQNLDLSGNRF----------EGLYENKTYDSFGSLKQLKILNLGDNRFND----SILRY 161
           L  + +  N            EGL   +          LK+L+L DN F      ++   
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQE---------LKVLDLQDNTFTHLGSSALAIA 239

Query: 162 LNTLTSLTTLILRFNNI 178
           L +  +L  L L    +
Sbjct: 240 LKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSL-------KQLKILNLGDNRFND----SILRYLN 163
           +L+  + S   F G  +++  ++   L        +L  + L DN F       ++ +L+
Sbjct: 61  DLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 164 TLTSLTTLILRFNNI 178
             T L  L L  N +
Sbjct: 120 KHTPLEHLYLHNNGL 134

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLN 163
           L+  +F   ++L+ LD+S NR + +       S   +  L+ L+L  N F+   + +   
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNI-------SCCPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 164 TLTSLTTLILRFNNI 178
            LT LT L L     
Sbjct: 144 NLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 84  KTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQ 143
           K+         +F           +L+  F E+    LS +    ++         S   
Sbjct: 305 KSLMIEHVKNQVFLFSKE------ALYSVFAEMNIKMLSISDTPFIHMV----CPPSPSS 354

Query: 144 LKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179
              LN   N F DS+ +  +TL  L TLIL+ N ++
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 14/80 (17%)

Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT 164
           ++ S       LQ L L+ N    + E+    SF SL  L+ L+L  N      L  L++
Sbjct: 67  ISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNY-----LSNLSS 117

Query: 165 -----LTSLTTLILRFNNIE 179
                L+SLT L L  N  +
Sbjct: 118 SWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
            E +++LDLS NR   +  +           L+ L L  N  N       ++L SL  L 
Sbjct: 51  TEAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106

Query: 173 LRFNNI 178
           L +N +
Sbjct: 107 LSYNYL 112

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR 174
           EL++ DL    F  L      +S       + + + D      +++ LN ++ L  L   
Sbjct: 228 ELRDTDLDTFHFSEL-STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 175 FNNIE 179
            N ++
Sbjct: 286 RNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 22/98 (22%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDS----------------------FGS 140
           S L+ S F P   L  L+L GN ++ L E   +                        F  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 141 LKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178
           L  L+ L +  +       + L ++ +++ LIL     
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 21/95 (22%)

Query: 105 LNMSLFYPFEELQNLDLSGNR--------FEG--------LYENK----TYDSFGSLKQL 144
           +    +     L  L L+GN         F G          E           G LK L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 145 KILNLGDNRFNDSIL-RYLNTLTSLTTLILRFNNI 178
           K LN+  N      L  Y + LT+L  L L  N I
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT----- 164
           F+ F ELQ LDLS    + + +     ++ SL  L  L L  N      ++ L       
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNP-----IQSLALGAFSG 98

Query: 165 LTSLTTLILRFNNI 178
           L+SL  L+    N+
Sbjct: 99  LSSLQKLVAVETNL 112

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  L L  N           DS   LK L+IL++ +N+     +  L  L+ L  L L  
Sbjct: 108 LSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHG 159

Query: 176 NNIE 179
           N I 
Sbjct: 160 NEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
                  +L       L       S   L  ++  N  ++      L  +   T+L  L 
Sbjct: 18  LANAVKQNLGKQSVTDL------VSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 173 LRFNNIE 179
           L  N I 
Sbjct: 70  LSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLI 172
              +QN +   +  + L              LK L+L  N+ +D  L  L  LT L  L 
Sbjct: 40  LSGVQNFNGDNSNIQSL------AGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELS 91

Query: 173 LRFNNIE 179
           +  N ++
Sbjct: 92  VNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 9/64 (14%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ L ++ NR + L       +      L  L L +N   D     L  L +L  L +R 
Sbjct: 87  LEELSVNRNRLKNL-------NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRN 137

Query: 176 NNIE 179
           N ++
Sbjct: 138 NKLK 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 102 ASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY 161
             L    +F    +L+ ++ S N+   + E     +F     +  + L  NR  +   + 
Sbjct: 45  TVLEATGIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLENVQHKM 100

Query: 162 LNTLTSLTTLILRFNNIE 179
              L SL TL+LR N I 
Sbjct: 101 FKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-NTLTSL 168
           F     +  + L+ NR E +     +  F  L+ LK L L  NR    +       L+S+
Sbjct: 77  FEGASGVNEILLTSNRLENV----QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSV 131

Query: 169 TTLILRFNNI 178
             L L  N I
Sbjct: 132 RLLSLYDNQI 141

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 14/73 (19%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL-GDNRF--------NDSILRYLNTLT 166
           L+ L L+ N    L       S  SL +L+ L++              +         L 
Sbjct: 129 LETLTLARNPLRALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 167 SLTTLILRFNNIE 179
           +L +L L +  I 
Sbjct: 184 NLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 102 ASLLNMSLFYPFEELQNL---DLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSI 158
             L +       + L NL    L       L       S  +L+ LK L + ++  + ++
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-----SIANLQNLKSLKIRNSPLS-AL 221

Query: 159 LRYLNTLTSLTTLILRFNN 177
              ++ L  L  L LR   
Sbjct: 222 GPAIHHLPKLEELDLRGCT 240

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 6/66 (9%)

Query: 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLIL 173
                L+L         +         L  L+ + +        +   +     L TL L
Sbjct: 81  PGRVALELRSVPLPQFPD-----QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 174 RFNNIE 179
             N + 
Sbjct: 135 ARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 12/65 (18%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN---DSILRYLNTLTSLTTLI 172
           LQ++ +       L +     +      L+ L L  N       SI      L  L  L 
Sbjct: 106 LQHMTIDAAGLMELPD-----TMQQFAGLETLTLARNPLRALPASIAS----LNRLRELS 156

Query: 173 LRFNN 177
           +R   
Sbjct: 157 IRACP 161

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 92  NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD 151
           + N F   P            ++ L  +DLS NR   L    +  SF ++ QL  L L  
Sbjct: 39  DGNQFTLVPKE-------LSNYKHLTLIDLSNNRISTL----SNQSFSNMTQLLTLILSY 87

Query: 152 NRFNDSILRYLNTLTSLTTLILRFNNI 178
           NR      R  + L SL  L L  N+I
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGNDI 114

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L+ +    N+ E L          +L  L  +   +N          +   SL +++   
Sbjct: 175 LEFIAAGNNQLEEL------PELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGN 224

Query: 176 NNIE 179
           N +E
Sbjct: 225 NILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-NTLTSLTTLI 172
             L+ L +S N+ E L          +   LKI+++ +N      L+ L +   SL  + 
Sbjct: 131 PLLEYLGVSNNQLEKL------PELQNSSFLKIIDVDNNS-----LKKLPDLPPSLEFIA 179

Query: 173 LRFNNIE 179
              N +E
Sbjct: 180 AGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
           L  +    N  + L              L+ +  G+N      L  L  L  LTT+    
Sbjct: 197 LTAIYADNNSLKKL--------PDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADN 246

Query: 176 NNIE 179
           N ++
Sbjct: 247 NLLK 250

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-NTLTSL 168
           F     L +L L GN+   L        F  L  L++L L  N+ N  +       L +L
Sbjct: 76  FQGLRSLNSLVLYGNKITEL----PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNL 130

Query: 169 TTLILRFNNI 178
             L L  N +
Sbjct: 131 NLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
           F P+++L+ +DLS N+   L      D+F  L+ L  L L  N+  +        L SL 
Sbjct: 52  FSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107

Query: 170 TLILRFNNIE 179
            L+L  N I 
Sbjct: 108 LLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 117 QNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-----NTLTSLTTL 171
             + L  N  + +       +F   K+L+ ++L +N+     +  L       L SL +L
Sbjct: 35  TEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLNSL 85

Query: 172 ILRFNNIE 179
           +L  N I 
Sbjct: 86  VLYGNKIT 93

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 24/83 (28%)

Query: 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN---DSI--LRYLN---- 163
              L+ LD   NR   L E            LK L++ +N+     +    L Y+N    
Sbjct: 99  PASLEYLDACDNRLSTLPE--------LPASLKHLDVDNNQLTMLPELPALLEYINADNN 150

Query: 164 -------TLTSLTTLILRFNNIE 179
                    TSL  L +R N + 
Sbjct: 151 QLTMLPELPTSLEVLSVRNNQLT 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.47
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.39
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.35
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.25
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.24
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.22
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.04
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.03
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.02
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.02
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.02
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.01
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.68
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.62
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.55
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.51
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.43
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.15
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.98
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.61
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.05

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=5.5e-24  Score=171.89  Aligned_cols=139  Identities=24%  Similarity=0.424  Sum_probs=114.7

Q ss_pred             cCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCC--ccceEeCCCC--CCEEEEEcCCCCCCCC--
Q 048227           17 KACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDD--WEGVKCSATT--RRVMQLSLNKTTKFND--   90 (179)
Q Consensus        17 ~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~--w~Gv~C~~~~--~~v~~l~L~~~~~l~~--   90 (179)
                      +.|.++|++||++||+++.     +|.  .+.+|...     .+|| .  |.||+|+...  ++|+.|+|+++. +.+  
T Consensus         1 ~~c~~~~~~aL~~~k~~~~-----~~~--~l~~W~~~-----~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~   66 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLG-----NPT--TLSSWLPT-----TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPY   66 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTT-----CCG--GGTTCCTT-----SCTT-TTCSTTEEECCSSSCCCEEEEEEECCC-CSSCE
T ss_pred             CCCCHHHHHHHHHHHHhcC-----Ccc--cccCCCCC-----CCCC-cCCCcceEeCCCCCCceEEEEECCCCC-ccCCc
Confidence            3589999999999999997     765  68899763     6899 8  9999998644  799999999998 873  


Q ss_pred             ----------------CC-cCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227           91 ----------------SN-YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR  153 (179)
Q Consensus        91 ----------------~~-~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~  153 (179)
                                      +. .|.+.|.+|..      |+++++|++|++++|++++.+|.    .+..+++|++|++++|+
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~  136 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSE
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCc
Confidence                            11 25555555543      67788889999998888888888    88889999999999999


Q ss_pred             CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          154 FNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       154 l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +++.+|..++++++|++|+|++|+++
T Consensus       137 l~~~~p~~~~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A          137 LSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             EESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             cCCcCChHHhcCCCCCeEECcCCccc
Confidence            99889988999999999999988763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1.2e-22  Score=181.64  Aligned_cols=143  Identities=26%  Similarity=0.323  Sum_probs=94.1

Q ss_pred             hcccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCCCCCEEEEEcCCCCCCCCC--
Q 048227           14 HGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDS--   91 (179)
Q Consensus        14 ~~~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~~~--   91 (179)
                      ++++++.++|++||++||+++.     ||.  .+.+|..+     .+|| .|.||+|+  .++|++|+|++.. +.+.  
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~-----~~~--~l~~W~~~-----~~~C-~w~gv~C~--~~~v~~L~L~~~~-l~g~~~   67 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLP-----DKN--LLPDWSSN-----KNPC-TFDGVTCR--DDKVTSIDLSSKP-LNVGFS   67 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCS-----CTT--SSTTCCTT-----SCGG-GSTTEEEE--TTEEEEEECTTSC-CCEEHH
T ss_pred             CccccCCHHHHHHHHHHHhhCC-----Ccc--cccCCCCC-----CCCc-CCcceEEC--CCcEEEEECCCCC-cCCccC
Confidence            4455567899999999999997     776  68999853     6899 99999998  5899999999988 7621  


Q ss_pred             --------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc
Q 048227           92 --------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS  157 (179)
Q Consensus        92 --------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~  157 (179)
                                    ..+.+.|.+|    .+..++.+++|++|+|++|.++|.+|..  ..++++++|++|+|++|++++.
T Consensus        68 ~l~~~l~~L~~L~~l~~~~~~~~~----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~  141 (768)
T 3rgz_A           68 AVSSSLLSLTGLESLFLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFP  141 (768)
T ss_dssp             HHHHHTTTCTTCCEEECTTSCEEE----CCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECC
T ss_pred             ccChhHhccCcccccCCcCCCcCC----CchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCc
Confidence                          1122222221    0134666777777777777777766531  1355666666666666666666


Q ss_pred             Chhhh-CCCCCCCEEeCCCCcC
Q 048227          158 ILRYL-NTLTSLTTLILRFNNI  178 (179)
Q Consensus       158 iP~~l-~~l~~L~~L~Ls~N~l  178 (179)
                      +|..+ .++++|++|+|++|++
T Consensus       142 ~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A          142 GKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             SSCCSCCCCTTCSEEECCSSCC
T ss_pred             CCHHHhccCCCCCEEECCCCcc
Confidence            65544 5555666666655554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=6.9e-21  Score=167.11  Aligned_cols=145  Identities=17%  Similarity=0.218  Sum_probs=111.4

Q ss_pred             CChHHHHHHHHHHHhhccccccCCCCCc-------CCCCCCCCCCCCCCCCCCCc---cceEeCCCCCCEEEEEcCCCCC
Q 048227           18 ACLETERTALLELKSFFVSVSDIGYDHE-------ILRSWGGDDEGMSSDCCDDW---EGVKCSATTRRVMQLSLNKTTK   87 (179)
Q Consensus        18 ~~~~~~~~aLl~~k~~l~~~~~~~~~~~-------~l~~W~~~~~~~s~~~C~~w---~Gv~C~~~~~~v~~l~L~~~~~   87 (179)
                      +....|++||.++|.++.     ++.+.       ...+|...     .+|| .|   .||+|+. .+||++|+|++++ 
T Consensus        26 ~~~~~d~~aL~~~~~~~~-----~~~w~~~~~~~~~~~~W~~~-----~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~-   92 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALN-----GKNWSQQGFGTQPGANWNFN-----KELD-MWGAQPGVSLNS-NGRVTGLSLEGFG-   92 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTT-----GGGCCCCC------CCCCCS-----SCGG-GTTCCTTEEECT-TCCEEEEECTTSC-
T ss_pred             hhHHHHHHHHHHHHHHcC-----CCCcccCCcCCccCCCCCCC-----CCcc-cccCCCCeEEcC-CCCEEEEEecCcc-
Confidence            344679999999999986     44432       13379873     6899 99   9999986 4899999999998 


Q ss_pred             CC----------------CCCcCcc------CC---------------------------CCCccc--------------
Q 048227           88 FN----------------DSNYNLF------YG---------------------------GPSASL--------------  104 (179)
Q Consensus        88 l~----------------~~~~n~~------~g---------------------------~ip~~~--------------  104 (179)
                      +.                ++..|.+      .|                           .+|...              
T Consensus        93 l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~  172 (636)
T 4eco_A           93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ  172 (636)
T ss_dssp             CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred             cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence            65                2344433      11                           000000              


Q ss_pred             ------------------------cCCccCCCCCCCcEEeccCCccCcc-----------------ccCccccccC--cc
Q 048227          105 ------------------------LNMSLFYPFEELQNLDLSGNRFEGL-----------------YENKTYDSFG--SL  141 (179)
Q Consensus       105 ------------------------~~~~~l~~l~~L~~L~Ls~N~l~g~-----------------iP~~~~~~l~--~l  141 (179)
                                              .-+..++++++|++|+|++|+|+|.                 +|.    .++  ++
T Consensus       173 ~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l  248 (636)
T 4eco_A          173 KSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNL  248 (636)
T ss_dssp             CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGC
T ss_pred             cccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhccc
Confidence                                    0123477899999999999999996                 898    888  99


Q ss_pred             cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc-CC
Q 048227          142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN-IE  179 (179)
Q Consensus       142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~-lt  179 (179)
                      ++|++|+|++|++.|.+|+.++++++|++|++++|+ ++
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~  287 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS  287 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred             CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence            999999999999999999999999999999999997 64

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=4.8e-20  Score=167.03  Aligned_cols=146  Identities=18%  Similarity=0.167  Sum_probs=112.6

Q ss_pred             ccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCC--CCCc------------cceEeCCCCCCEEEEE
Q 048227           16 YKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDC--CDDW------------EGVKCSATTRRVMQLS   81 (179)
Q Consensus        16 ~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~--C~~w------------~Gv~C~~~~~~v~~l~   81 (179)
                      .+++..+|++||++||+++.     +|      +|.........+|  | .|            .||+|+. .+||++|+
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~-----~~------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~  329 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALD-----GK------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLS  329 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT-----GG------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred             ccccchHHHHHHHHHHHHcC-----CC------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEE
Confidence            44556789999999999997     55      4544210000244  9 99            9999987 68999999


Q ss_pred             cCCCCCCC----------------CC-CcCccCCCCCcccc---------------------------------------
Q 048227           82 LNKTTKFN----------------DS-NYNLFYGGPSASLL---------------------------------------  105 (179)
Q Consensus        82 L~~~~~l~----------------~~-~~n~~~g~ip~~~~---------------------------------------  105 (179)
                      |++++ +.                ++ +.|.+.|..|....                                       
T Consensus       330 Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l  408 (876)
T 4ecn_A          330 LAGFG-AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI  408 (876)
T ss_dssp             CTTTC-CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             CccCC-CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence            99998 75                24 55655555321100                                       


Q ss_pred             -------------------------------CCccCCCCCCCcEEeccCCccCc-----------------cccCccccc
Q 048227          106 -------------------------------NMSLFYPFEELQNLDLSGNRFEG-----------------LYENKTYDS  137 (179)
Q Consensus       106 -------------------------------~~~~l~~l~~L~~L~Ls~N~l~g-----------------~iP~~~~~~  137 (179)
                                                     -+..++++++|++|+|++|+|+|                 .+|.    .
T Consensus       409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~  484 (876)
T 4ecn_A          409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----E  484 (876)
T ss_dssp             HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----C
T ss_pred             hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----h
Confidence                                           12347889999999999999999                 4888    8


Q ss_pred             cC--cccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc-CC
Q 048227          138 FG--SLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN-IE  179 (179)
Q Consensus       138 l~--~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~-lt  179 (179)
                      ++  ++++|++|+|++|++.|.+|..++++++|++|+|++|+ |+
T Consensus       485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls  529 (876)
T 4ecn_A          485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS  529 (876)
T ss_dssp             CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred             hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence            77  99999999999999999999999999999999999997 53

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=4e-18  Score=138.45  Aligned_cols=140  Identities=17%  Similarity=0.209  Sum_probs=82.8

Q ss_pred             ccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCC---CCCCCCCCCCCCCccceEeCC--------CCCCEEEEEcCC
Q 048227           16 YKACLETERTALLELKSFFVSVSDIGYDHEILRSWG---GDDEGMSSDCCDDWEGVKCSA--------TTRRVMQLSLNK   84 (179)
Q Consensus        16 ~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~---~~~~~~s~~~C~~w~Gv~C~~--------~~~~v~~l~L~~   84 (179)
                      ..++..+|++||++||..+.    .++.+ ....|.   ..    ..++| .|.|+.|+.        ...+|+.|+|++
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~----~~~~~-~~~~w~~~~~~----~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~   90 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYN----ADRNR-WHSAWRQANSN----NPQIE-TRTGRALKATADLLEDATQPGRVALELRS   90 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHH----HCCTT-HHHHHHHHTTT----CTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEES
T ss_pred             ccccCchHHHHHHHHHHhcc----CCchh-hhhhhcccccc----ccccc-ccCCcchhhhHHHHhcccccceeEEEccC
Confidence            34456789999999999884    25543 567884   21    26889 999999952        246899999999


Q ss_pred             CCCCCCC---------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeC
Q 048227           85 TTKFNDS---------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL  149 (179)
Q Consensus        85 ~~~l~~~---------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~L  149 (179)
                      +. +..+               .+|.+. .+|.      .++.+++|++|+|++|+++ .+|.    .++.+++|++|++
T Consensus        91 n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~------~~~~l~~L~~L~Ls~n~l~-~lp~----~l~~l~~L~~L~L  157 (328)
T 4fcg_A           91 VP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPD------TMQQFAGLETLTLARNPLR-ALPA----SIASLNRLRELSI  157 (328)
T ss_dssp             SC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCS------CGGGGTTCSEEEEESCCCC-CCCG----GGGGCTTCCEEEE
T ss_pred             CC-chhcChhhhhCCCCCEEECCCCCcc-chhH------HHhccCCCCEEECCCCccc-cCcH----HHhcCcCCCEEEC
Confidence            98 7621               122222 2222      1444555555555555555 3454    5555555555555


Q ss_pred             cCCCCCCcChhhhCC---------CCCCCEEeCCCCcC
Q 048227          150 GDNRFNDSILRYLNT---------LTSLTTLILRFNNI  178 (179)
Q Consensus       150 s~N~l~g~iP~~l~~---------l~~L~~L~Ls~N~l  178 (179)
                      ++|++.+.+|..++.         +++|++|+|++|++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l  195 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI  195 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence            555555555554433         55555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=1.3e-14  Score=109.18  Aligned_cols=106  Identities=28%  Similarity=0.373  Sum_probs=79.5

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCC-----------------CcCccCCCCCccccCCccCCCCCC
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDS-----------------NYNLFYGGPSASLLNMSLFYPFEE  115 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~-----------------~~n~~~g~ip~~~~~~~~l~~l~~  115 (179)
                      | .|..+.|...         ...++.|+++++. +..+                 .+|.+.+..|      ..|..+++
T Consensus         8 C-~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~   79 (192)
T 1w8a_A            8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEP------NAFEGASH   79 (192)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCT------TTTTTCTT
T ss_pred             E-CCCEEEcCCCCcCcCccCCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCH------hHcCCccc
Confidence            6 7888888642         1367888888887 6632                 2233333222      34777888


Q ss_pred             CcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       116 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |++|+|++|++++..|.    .+..+++|++|+|++|++++.+|..+..+++|++|+|++|+++
T Consensus        80 L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           80 IQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            88888888888886666    6888889999999999999888888888899999999988764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=4.7e-14  Score=108.84  Aligned_cols=114  Identities=25%  Similarity=0.316  Sum_probs=80.5

Q ss_pred             CCCCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEE
Q 048227           59 SDCCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNL  119 (179)
Q Consensus        59 ~~~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L  119 (179)
                      ...| .|.+|.|...         ...++.|+|+++. +..+....|.+--..          ..+....|..+++|++|
T Consensus        16 ~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           16 QCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL   93 (229)
T ss_dssp             TCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence            5789 9999999752         2467889999888 773322111110000          01112336778888888


Q ss_pred             eccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          120 DLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       120 ~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +|++|++++..+.    .+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|+
T Consensus        94 ~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           94 DLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             ECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             ECCCCcCCccChh----HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            8888888875554    5788888888888888888 78888888888889988888774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=4.6e-14  Score=104.28  Aligned_cols=98  Identities=28%  Similarity=0.358  Sum_probs=79.2

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN  132 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~  132 (179)
                      | .|+.+.|...         ...++.|+|+++. ++        +..|.      .|..+++|++|+|++|+|++..|.
T Consensus         9 C-~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~-i~--------~~~~~------~~~~l~~L~~L~Ls~N~l~~l~~~   72 (170)
T 3g39_A            9 C-SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ-IT--------KLEPG------VFDRLTQLTRLDLDNNQLTVLPAG   72 (170)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CC--------CCCTT------TTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             c-CCCEEEeCCCCcCccCccCCCCCcEEEcCCCc-CC--------ccChh------hhcCcccCCEEECCCCCcCccChh
Confidence            6 6888888642         1356677777777 66        44333      388899999999999999985555


Q ss_pred             ccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          133 KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       133 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                          .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+++
T Consensus        73 ----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           73 ----VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ----hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence                6789999999999999999777778999999999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=1.2e-13  Score=104.48  Aligned_cols=106  Identities=25%  Similarity=0.343  Sum_probs=58.3

Q ss_pred             CCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCC
Q 048227           61 CCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEE  115 (179)
Q Consensus        61 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~  115 (179)
                      .| .|.+|.|...         ..+++.|+++++. +..+.                +|.+.+ +|     ...|..+++
T Consensus         6 ~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-----~~~~~~l~~   77 (208)
T 2o6s_A            6 SC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQS-LP-----NGVFNKLTS   77 (208)
T ss_dssp             EE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCC-CC-----TTTTTTCTT
T ss_pred             EE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCc-cC-----hhhcCCCCC
Confidence            47 8999999752         2368889999888 76332                233321 11     122445555


Q ss_pred             CcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       116 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |++|++++|++++..+.    .+..+++|++|++++|++++..|..+.++++|++|++++|++
T Consensus        78 L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             CCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            66666666655543332    345555555555555555544444445555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.50  E-value=1.7e-14  Score=128.87  Aligned_cols=85  Identities=27%  Similarity=0.380  Sum_probs=78.2

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      .++.|||+++. ++        |.+|.+      +++++.|++|+|++|+++|.||.    .++.+++|++|||++|+++
T Consensus       633 ~L~~LdLs~N~-l~--------g~ip~~------l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          633 SMMFLDMSYNM-LS--------GYIPKE------IGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             CCCEEECCSSC-CB--------SCCCGG------GGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCE
T ss_pred             cccEEECcCCc-cc--------ccCCHH------HhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEECCCCccc
Confidence            46677777777 66        999976      88899999999999999999999    9999999999999999999


Q ss_pred             CcChhhhCCCCCCCEEeCCCCcCC
Q 048227          156 DSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       156 g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |.||..++++++|++|+|++|+|+
T Consensus       694 g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          694 GRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CcCChHHhCCCCCCEEECcCCccc
Confidence            999999999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.1e-13  Score=102.21  Aligned_cols=113  Identities=23%  Similarity=0.327  Sum_probs=73.1

Q ss_pred             CCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEec
Q 048227           61 CCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDL  121 (179)
Q Consensus        61 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~L  121 (179)
                      .| .|.+|.|...         ...++.|+++++. +..+....|.+--...          .+....|..+++|++|++
T Consensus         6 ~C-~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            6 SC-SGTEIRCNSKGLTSVPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             EE-ETTEEECCSSCCSSCCTTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             Ee-CCCEEEecCCCCccCCCCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            37 8999999752         1467888998887 7633221111100000          011223567778888888


Q ss_pred             cCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          122 SGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       122 s~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|++++..|.    .+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus        84 ~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           84 HENKLQSLPNG----VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccccCHH----HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            88888875554    5677888888888888888555555677888888888888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=6.4e-14  Score=109.12  Aligned_cols=66  Identities=32%  Similarity=0.424  Sum_probs=41.9

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |..+++|++|+|++|++++..|.    .+..+++|++|+|++|++++..|..+..+++|++|+|++|+|+
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            45566666666666666654444    5566666777777777776555555666777777777777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.48  E-value=1.5e-13  Score=105.47  Aligned_cols=105  Identities=23%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCCC
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEEL  116 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~L  116 (179)
                      | .|..|.|...         ...++.|+++++. +..+.                +|.+.+..      +..|..+++|
T Consensus        11 C-~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~------~~~~~~l~~L   82 (220)
T 2v9t_B           11 C-SNNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELA------PDAFQGLRSL   82 (220)
T ss_dssp             E-ETTEEECTTSCCSSCCSSCCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEEC------TTTTTTCSSC
T ss_pred             E-CCCEEEcCCCCcCcCCCccCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcC------HHHhhCCcCC
Confidence            6 7888999742         1367888998887 76332                23222221      2335566666


Q ss_pred             cEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          117 QNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       117 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|+|++|+++. +|+.   .+..+++|++|+|++|++++..|..|..+++|++|+|++|+|
T Consensus        83 ~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           83 NSLVLYGNKITE-LPKS---LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             CEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCc-cCHh---HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            666666666665 3331   345566666666666666655556666666666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.47  E-value=1.6e-13  Score=108.03  Aligned_cols=65  Identities=29%  Similarity=0.434  Sum_probs=41.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |..+++|++|++++|++++..+.    .+..+++|++|++++|++++..|..++.+++|++|+|++|++
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL  145 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence            34555666666666666653333    456666677777777777665556666777777777777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=2e-13  Score=104.77  Aligned_cols=65  Identities=34%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |..+++|++|+|++|++++..|.    .+..+++|++|+|++|++++..|..|..+++|++|+|++|.+
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTT----SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             hcCCcCCCEEECCCCcCCeECHh----HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            33444444444444444443343    444455555555555555544455555555555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.45  E-value=3e-13  Score=101.86  Aligned_cols=105  Identities=28%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCC---------------CcCccCCCCCccccCCccCCCCCCCc
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDS---------------NYNLFYGGPSASLLNMSLFYPFEELQ  117 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~---------------~~n~~~g~ip~~~~~~~~l~~l~~L~  117 (179)
                      | .|..|.|...         ...++.|+++++. ++.+               .+|.+.+.      .+..|..+++|+
T Consensus        10 C-~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i------~~~~f~~l~~L~   81 (193)
T 2wfh_A           10 C-LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTL------SNQSFSNMTQLL   81 (193)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCC------CTTTTTTCTTCC
T ss_pred             e-CCCEEEcCCCCCCcCCCCCCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEe------CHhHccCCCCCC
Confidence            5 6777888642         1357888888887 6522               12222211      112355666666


Q ss_pred             EEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          118 NLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       118 ~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +|+|++|++++..|.    .|..+++|++|+|++|++++..+..|..+++|++|+|++|.+
T Consensus        82 ~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           82 TLILSYNRLRCIPPR----TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             EEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EEECCCCccCEeCHH----HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            666666666665444    566666666666666666644444566666666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=5.6e-13  Score=108.12  Aligned_cols=97  Identities=19%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             CCCccceEeCCC-----------CCCEEEEEcCC-CCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCcc
Q 048227           62 CDDWEGVKCSAT-----------TRRVMQLSLNK-TTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL  129 (179)
Q Consensus        62 C~~w~Gv~C~~~-----------~~~v~~l~L~~-~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~  129 (179)
                      | .|..|.|...           ..+++.|+|++ +. +.        +..|      ..|..|++|++|+|++|+|++.
T Consensus         8 C-~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~-l~--------~~~~------~~~~~l~~L~~L~l~~N~l~~~   71 (347)
T 2ifg_A            8 H-GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQ--------HLEL------RDLRGLGELRNLTIVKSGLRFV   71 (347)
T ss_dssp             S-SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CC--------EECG------GGSCSCCCCSEEECCSSCCCEE
T ss_pred             c-cCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC-CC--------CcCh------hHhccccCCCEEECCCCcccee
Confidence            8 9999999763           12367777775 66 65        2222      3378899999999999999997


Q ss_pred             ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          130 YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       130 iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|.    .|..|++|++|+|++|+|++..|..+..++ |++|+|.+|+|+
T Consensus        72 ~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           72 APD----AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CTT----GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CHH----HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            777    889999999999999999965555555555 999999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.42  E-value=4.3e-13  Score=114.60  Aligned_cols=97  Identities=28%  Similarity=0.329  Sum_probs=68.8

Q ss_pred             CCCCccceEeCCC-----------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCcc
Q 048227           61 CCDDWEGVKCSAT-----------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL  129 (179)
Q Consensus        61 ~C~~w~Gv~C~~~-----------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~  129 (179)
                      .| .|.|+ |+..           ..+++.|+++++. ++        +..|      ..|..+++|++|++++|++++.
T Consensus         3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~-l~--------~~~~------~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK-IT--------YIGH------GDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC-CC--------EECS------STTSSCTTCCEEECTTSCCCEE
T ss_pred             cC-CCCce-EECCCCccccccccCCCCccEEECcCCc-cC--------ccCh------hhhhcCCcccEEECCCCCcCcc
Confidence            58 89998 8742           1368888888888 76        3222      2366677777777777777776


Q ss_pred             ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          130 YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       130 iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      .|.    .++.+++|++|++++|++++..|..++++++|++|+|++|++
T Consensus        66 ~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           66 EGD----AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             CTT----TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred             Chh----hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence            656    677777777777777777766666677777777777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=9.9e-13  Score=97.53  Aligned_cols=67  Identities=28%  Similarity=0.386  Sum_probs=58.5

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..+++|++|+|++|+|++..+.    .+..+++|++|+|++|+|++..|..|..+++|++|+|++|+++
T Consensus        52 ~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           52 VFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             HhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            388899999999999999994444    5789999999999999999766666999999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=1.9e-13  Score=121.81  Aligned_cols=64  Identities=30%  Similarity=0.305  Sum_probs=50.8

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |+.|++|++|+|++|+|+ .+|.    .++.|++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+
T Consensus       266 ~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLT-SLPA----ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             GGGGTTCCEEECTTSCCS-SCCS----SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             hhCCCCCCEEeCcCCcCC-ccCh----hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence            566778888888888888 5777    7888888888888888886 77877888888888888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.39  E-value=1.2e-12  Score=100.32  Aligned_cols=68  Identities=28%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..|..+++|++|+|++|++++..|.    .+..+++|++|+|++|++++..|..|..+++|++|+|++|+|+
T Consensus        75 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           75 GAFEGASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             HHhCCCCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence            3488899999999999999997776    7999999999999999999998999999999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.37  E-value=1.9e-12  Score=111.55  Aligned_cols=99  Identities=19%  Similarity=0.220  Sum_probs=63.7

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL  144 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L  144 (179)
                      ..++.|||+++. ++.+....|.+---..          .+.+..|.++++|++|+|++|++++..|.    .|.++++|
T Consensus        52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTC
T ss_pred             cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCC
Confidence            368999999998 8743332222110000          12223466777777777777777764444    56777777


Q ss_pred             CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|+|++|++++..|..|+++++|++|+|++|++
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            7777777777765555677777777777777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.35  E-value=3.2e-12  Score=95.95  Aligned_cols=99  Identities=23%  Similarity=0.303  Sum_probs=78.2

Q ss_pred             cceEeCCCCCCEEEEEcCCCCCCCCCC-------------cCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227           66 EGVKCSATTRRVMQLSLNKTTKFNDSN-------------YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN  132 (179)
Q Consensus        66 ~Gv~C~~~~~~v~~l~L~~~~~l~~~~-------------~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~  132 (179)
                      .+..|..     +.+++++++ +..++             +|.+.+..+     ...|..+++|++|+|++|++++.+|.
T Consensus         4 ~~C~C~~-----~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~   72 (192)
T 1w8a_A            4 AMCHCEG-----TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISS-----DGLFGRLPHLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TTSEEET-----TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCC-----SCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred             CCCEECC-----CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCC-----ccccccCCCCCEEECCCCCCCCcCHh
Confidence            3456653     478899988 76332             222221111     12377899999999999999998888


Q ss_pred             ccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          133 KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       133 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                          .+..+++|++|+|++|++++..|..|.++++|++|+|++|+|+
T Consensus        73 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           73 ----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             ----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence                8999999999999999999988888999999999999999875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.34  E-value=4e-12  Score=103.38  Aligned_cols=99  Identities=32%  Similarity=0.386  Sum_probs=66.0

Q ss_pred             CCCCCCccceEeCCC-----------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccC
Q 048227           59 SDCCDDWEGVKCSAT-----------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE  127 (179)
Q Consensus        59 ~~~C~~w~Gv~C~~~-----------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~  127 (179)
                      ..+| .|.|+ |+..           ..+++.|+++++. +..         +|.     ..+.++++|++|++++|+++
T Consensus        27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~-i~~---------~~~-----~~~~~l~~L~~L~L~~n~l~   89 (353)
T 2z80_A           27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR-ITY---------ISN-----SDLQRCVNLQALVLTSNGIN   89 (353)
T ss_dssp             CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC-CCE---------ECT-----TTTTTCTTCCEEECTTSCCC
T ss_pred             CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCc-Ccc---------cCH-----HHhccCCCCCEEECCCCccC
Confidence            4678 89998 7632           1367888888888 761         221     23566677777777777777


Q ss_pred             ccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          128 GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       128 g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..|.    .++.+++|++|++++|++++..+..++++++|++|++++|++
T Consensus        90 ~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  136 (353)
T 2z80_A           90 TIEED----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY  136 (353)
T ss_dssp             EECTT----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred             ccCHh----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence            65555    667777777777777777754444467777777777777765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.32  E-value=3.3e-12  Score=106.67  Aligned_cols=109  Identities=26%  Similarity=0.304  Sum_probs=77.6

Q ss_pred             CCCCCccc--eEeCCCC--------CCEEEEEcCCCCCCCCC----------------CcCccCCCCCccccCCccCCCC
Q 048227           60 DCCDDWEG--VKCSATT--------RRVMQLSLNKTTKFNDS----------------NYNLFYGGPSASLLNMSLFYPF  113 (179)
Q Consensus        60 ~~C~~w~G--v~C~~~~--------~~v~~l~L~~~~~l~~~----------------~~n~~~g~ip~~~~~~~~l~~l  113 (179)
                      ..| .|.+  |.|+...        .+++.|+|+++. +.++                ..|.+.+.+     .+..|..+
T Consensus         6 ~~c-~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i-----~~~~~~~l   78 (455)
T 3v47_A            6 SEC-SVIGYNAICINRGLHQVPELPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVI-----RNNTFRGL   78 (455)
T ss_dssp             -CC-EEETTEEECCSSCCSSCCCCCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEE-----CTTTTTTC
T ss_pred             cee-EEEccccCcCCCCcccCCCCCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceE-----Cccccccc
Confidence            456 6665  7886522        468999999998 7632                122222222     22346778


Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhh--hCCCCCCCEEeCCCCcCC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY--LNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|++|+|++|++++..|.    .++.+++|++|++++|++++.+|..  ++++++|++|+|++|+++
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  142 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK  142 (455)
T ss_dssp             TTCCEEECTTCTTCEECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred             ccCCEEeCCCCccCccChh----hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence            8888888888888887777    7888888888888888888777665  888888888888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.30  E-value=8.2e-13  Score=106.21  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             CCEEEEEcCC-CCCCC----------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccc
Q 048227           75 RRVMQLSLNK-TTKFN----------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDS  137 (179)
Q Consensus        75 ~~v~~l~L~~-~~~l~----------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~  137 (179)
                      .+++.+++++ +. +.                ++.+|.+.|.+|..      +.++++|++|++++|++++.+|.    .
T Consensus        76 ~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------~~~l~~L~~L~Ls~N~l~~~~p~----~  144 (313)
T 1ogq_A           76 PYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF------LSQIKTLVTLDFSYNALSGTLPP----S  144 (313)
T ss_dssp             TTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGG------GGGCTTCCEEECCSSEEESCCCG----G
T ss_pred             CCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcCCHH------HhCCCCCCEEeCCCCccCCcCCh----H
Confidence            4577888874 54 43                12456666666654      78899999999999999999998    9


Q ss_pred             cCcccCCCEEeCcCCCCCCcChhhhCCCC-CCCEEeCCCCcCC
Q 048227          138 FGSLKQLKILNLGDNRFNDSILRYLNTLT-SLTTLILRFNNIE  179 (179)
Q Consensus       138 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~Ls~N~lt  179 (179)
                      ++.+++|++|++++|+++|.+|..+++++ +|++|++++|+++
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            99999999999999999999999999998 9999999999863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=9.9e-12  Score=93.49  Aligned_cols=79  Identities=32%  Similarity=0.307  Sum_probs=68.4

Q ss_pred             CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCC
Q 048227           90 DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT  169 (179)
Q Consensus        90 ~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  169 (179)
                      ++.+|.+. .+|.      .|..+++|++|+|++|++++..|.    .|..+++|++|+|++|++++..|..|..+++|+
T Consensus        37 ~L~~n~i~-~ip~------~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           37 YLDGNQFT-LVPK------ELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             ECCSSCCC-SCCG------GGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             ECCCCcCc-hhHH------HhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            34566665 5553      378899999999999999997666    899999999999999999988888999999999


Q ss_pred             EEeCCCCcCC
Q 048227          170 TLILRFNNIE  179 (179)
Q Consensus       170 ~L~Ls~N~lt  179 (179)
                      +|+|++|+|+
T Consensus       106 ~L~L~~N~l~  115 (193)
T 2wfh_A          106 LLSLHGNDIS  115 (193)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            9999999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=1.2e-11  Score=94.67  Aligned_cols=93  Identities=24%  Similarity=0.309  Sum_probs=75.0

Q ss_pred             CCEEEEEcCCCCCCCCC----------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcccccc
Q 048227           75 RRVMQLSLNKTTKFNDS----------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSF  138 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~----------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l  138 (179)
                      .+++.|+|+++. +..+                .+|.+. .+|     ...|..+++|++|+|++|++++..|.    .+
T Consensus        56 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~-----~~~f~~l~~L~~L~L~~N~l~~~~~~----~~  124 (220)
T 2v9t_B           56 KKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT-ELP-----KSLFEGLFSLQLLLLNANKINCLRVD----AF  124 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCC-CCC-----TTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred             CCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCC-ccC-----HhHccCCCCCCEEECCCCCCCEeCHH----Hc
Confidence            357777777776 6533                233332 222     23478899999999999999997787    89


Q ss_pred             CcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          139 GSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       139 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ..+++|++|+|++|++++..|..+..+++|++|+|++|++
T Consensus       125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            9999999999999999988888899999999999999986

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=2.2e-11  Score=90.24  Aligned_cols=87  Identities=22%  Similarity=0.276  Sum_probs=71.9

Q ss_pred             cceEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227           66 EGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK  145 (179)
Q Consensus        66 ~Gv~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~  145 (179)
                      .+..|..     +.++++++. +.         .+|..      +.  ++|++|+|++|+|++..|.    .+..+++|+
T Consensus         8 ~~C~C~~-----~~l~~~~n~-l~---------~iP~~------~~--~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~   60 (174)
T 2r9u_A            8 SQCSCDQ-----TLVNCQNIR-LA---------SVPAG------IP--TDKQRLWLNNNQITKLEPG----VFDHLVNLQ   60 (174)
T ss_dssp             TTSEECS-----SEEECCSSC-CS---------SCCSC------CC--TTCSEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred             CCCEECC-----cEEEeCCCC-CC---------ccCCC------cC--CCCcEEEeCCCCccccCHH----HhcCCcCCC
Confidence            3446742     568888888 75         56654      22  7899999999999997787    899999999


Q ss_pred             EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +|+|++|+|++..+..|.++++|++|+|++|+|+
T Consensus        61 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           61 QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            9999999999765566799999999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.29  E-value=1.8e-11  Score=95.13  Aligned_cols=67  Identities=31%  Similarity=0.460  Sum_probs=55.2

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..+++|++|+|++|++++..+.    .+..+++|++|+|++|++++..|..++.+++|++|+|++|+++
T Consensus       102 ~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             HhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            467788899999999999875554    5788889999999999998766667888899999999998874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=1.8e-11  Score=90.26  Aligned_cols=80  Identities=24%  Similarity=0.256  Sum_probs=69.4

Q ss_pred             EEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc
Q 048227           78 MQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS  157 (179)
Q Consensus        78 ~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~  157 (179)
                      +.++++++. ++         .+|..      +  .++|++|+|++|+|++..|.    .|..+++|++|+|++|+|++.
T Consensus        12 ~~l~~s~n~-l~---------~ip~~------~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l   69 (170)
T 3g39_A           12 TTVDCSGKS-LA---------SVPTG------I--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVL   69 (170)
T ss_dssp             TEEECTTSC-CS---------SCCSC------C--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCC
T ss_pred             CEEEeCCCC-cC---------ccCcc------C--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCcc
Confidence            578999998 76         45543      2  27899999999999997787    899999999999999999977


Q ss_pred             ChhhhCCCCCCCEEeCCCCcCC
Q 048227          158 ILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       158 iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..|.++++|++|+|++|+|+
T Consensus        70 ~~~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           70 PAGVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC
T ss_pred             ChhhccCCCCCCEEECCCCccC
Confidence            7777899999999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.28  E-value=1.4e-11  Score=94.86  Aligned_cols=99  Identities=19%  Similarity=0.208  Sum_probs=74.8

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL  144 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L  144 (179)
                      ..++.|+|+++. +..+....|.+.-...          .+....|..+++|++|+|++|+++ .+|.    .+..+++|
T Consensus        64 ~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L  137 (229)
T 3e6j_A           64 INLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR----GIERLTHL  137 (229)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT----TGGGCTTC
T ss_pred             cCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc----ccccCCCC
Confidence            467888888887 6633222221110000          111234778999999999999999 5898    89999999


Q ss_pred             CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|+|++|++++..+..+..+++|++|+|++|.++
T Consensus       138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            99999999999777778999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=2e-11  Score=89.98  Aligned_cols=66  Identities=30%  Similarity=0.455  Sum_probs=46.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |..+++|++|++++|++++..+.    .+..+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             hcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence            56677777777777777764444    4667777777777777777655556677777777777777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=1.2e-11  Score=101.20  Aligned_cols=111  Identities=23%  Similarity=0.296  Sum_probs=63.5

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCc-c----------ccCCccCCCCCCCcEEec
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSA-S----------LLNMSLFYPFEELQNLDL  121 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~-~----------~~~~~~l~~l~~L~~L~L  121 (179)
                      | .+..+.|...         ...++.|+|+++. ++.+....|.+.++. .          .+.+..|..+++|++|+|
T Consensus        18 C-~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           18 C-ASNILSCSKQQLPNVPQSLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             E-ETTEEECCSSCCSSCCSSCCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             E-CCCEEEeCCCCcCccCccCCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            5 6777888641         1346778888887 764333222211110 0          111223566667777777


Q ss_pred             cCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          122 SGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       122 s~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++++..+.    .|..+++|++|+|++|++++..|..|..+++|++|+|++|+|
T Consensus        96 s~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A           96 SSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             CSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            77776664444    456666666666666666655566666666666666666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.25  E-value=1.5e-11  Score=106.28  Aligned_cols=99  Identities=18%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL  144 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L  144 (179)
                      .+++.|+++++. ++++....|.+---.          ..+.+..|.++++|++|+|++|++++..|.    .++.+++|
T Consensus        32 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTC
T ss_pred             CCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh----hcCCcccC
Confidence            568899999988 763222111110000          011123366677777777777777776666    67777777


Q ss_pred             CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++++|++++..|..++++++|++|++++|++
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  140 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFI  140 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence            7777777777766556677777777777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.25  E-value=3.7e-11  Score=90.69  Aligned_cols=67  Identities=30%  Similarity=0.382  Sum_probs=59.7

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..+++|++|++++|++++..+.    .+..+++|++|++++|++++..+..+.++++|++|++++|.++
T Consensus        95 ~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           95 VFDKLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             HhcCccCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            378899999999999999986555    6899999999999999999777777899999999999999763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.25  E-value=8.7e-12  Score=89.38  Aligned_cols=84  Identities=25%  Similarity=0.255  Sum_probs=70.4

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .+++.++++++. +.        +.        ..+..+++|++|++++|++++.+|.    .+..+++|++|++++|++
T Consensus        42 ~~L~~L~l~~n~-l~--------~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~ls~N~i  100 (149)
T 2je0_A           42 EELEFLSTINVG-LT--------SI--------ANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKI  100 (149)
T ss_dssp             TTCCEEECTTSC-CC--------CC--------TTCCCCTTCCEEECCSSCCCSCTHH----HHHHCTTCCEEECTTSCC
T ss_pred             CCCcEEECcCCC-CC--------Cc--------hhhhcCCCCCEEECCCCcccchHHH----HhhhCCCCCEEECCCCcC
Confidence            468889999888 76        22        2377889999999999999998887    777899999999999999


Q ss_pred             CCc-ChhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDS-ILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~-iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++. .|..++.+++|++|++++|+++
T Consensus       101 ~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A          101 KDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CChHHHHHHhhCCCCCEEeCcCCccc
Confidence            973 4588999999999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=2.3e-11  Score=98.58  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             EEEcCCC-CCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccC-CccCccccCccccccCcccCCCEEeCcCCCCCC
Q 048227           79 QLSLNKT-TKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLKQLKILNLGDNRFND  156 (179)
Q Consensus        79 ~l~L~~~-~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g  156 (179)
                      .++++++ + ++         .||.       +..+++|++|+|++ |+|++..|.    .|+.|++|++|+|++|+|++
T Consensus        12 ~v~~~~~n~-l~---------~ip~-------l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A           12 GLRCTRDGA-LD---------SLHH-------LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRF   70 (347)
T ss_dssp             CEECCSSCC-CT---------TTTT-------SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCE
T ss_pred             EEEcCCCCC-CC---------ccCC-------CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccce
Confidence            4588887 6 66         3443       66788999999996 999997667    89999999999999999999


Q ss_pred             cChhhhCCCCCCCEEeCCCCcCC
Q 048227          157 SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       157 ~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..|..|+++++|++|+|++|+|+
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCS
T ss_pred             eCHHHhcCCcCCCEEeCCCCccc
Confidence            99999999999999999999985

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.24  E-value=5.9e-11  Score=93.34  Aligned_cols=64  Identities=34%  Similarity=0.350  Sum_probs=32.9

Q ss_pred             CCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ..+++|++|++++|++++..|.    .++.+++|++|++++|++++..|..++++++|++|++++|++
T Consensus       154 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQLQSLPEG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCccCCEEECCCCCcCccCHH----HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            3444555555555555543333    345555555555555555554444455555555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.23  E-value=1.8e-11  Score=105.39  Aligned_cols=67  Identities=28%  Similarity=0.348  Sum_probs=55.3

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCC-CCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTL-TSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~L~Ls~N~lt  179 (179)
                      .|.++++|++|+|++|+|++..|.    .+..+++|++|||++|+|++..|..+..+ ++|++|+|++|+++
T Consensus       513 ~f~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          513 AFNSLSSLQVLNMSHNNFFSLDTF----PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCCBCCCG----GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             HHcCCCCCCEEECCCCcCCCCChh----HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            377888888888888888886666    78888888888888888888888888887 57888888888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=2.2e-11  Score=87.20  Aligned_cols=85  Identities=28%  Similarity=0.333  Sum_probs=73.3

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .+++.++++++. +.+       |.+|..      +..+++|++|++++|.+++.  .    .++.+++|++|++++|++
T Consensus        17 ~~l~~L~l~~n~-l~~-------~~~~~~------~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i   76 (149)
T 2je0_A           17 SDVKELVLDNSR-SNE-------GKLEGL------TDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRV   76 (149)
T ss_dssp             GGCSEEECTTCB-CBT-------TBCCSC------CTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCC
T ss_pred             ccCeEEEccCCc-CCh-------hHHHHH------HhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcc
Confidence            467889988887 641       455543      67899999999999999985  5    899999999999999999


Q ss_pred             CCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++.+|..+..+++|++|++++|+++
T Consensus        77 ~~~~~~~~~~l~~L~~L~ls~N~i~  101 (149)
T 2je0_A           77 SGGLEVLAEKCPNLTHLNLSGNKIK  101 (149)
T ss_dssp             CSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred             cchHHHHhhhCCCCCEEECCCCcCC
Confidence            9889999999999999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.23  E-value=5.5e-11  Score=93.53  Aligned_cols=66  Identities=27%  Similarity=0.378  Sum_probs=47.6

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |..+++|++|++++|++++..|.    .++.+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             hccCCCCCEEECCCCccCccCHH----HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            56677777777777777764444    5677777777777777777666666777777888888777763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.22  E-value=3.8e-11  Score=100.80  Aligned_cols=95  Identities=24%  Similarity=0.283  Sum_probs=53.9

Q ss_pred             ccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccc
Q 048227           65 WEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTY  135 (179)
Q Consensus        65 w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~  135 (179)
                      |..|.|...         ...++.|+|+++. +..        ..|      ..|.++++|++|+|++|++++..|.   
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~--------~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~---  117 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENN-IQM--------IQA------DTFRHLHHLEVLQLGRNSIRQIEVG---  117 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCE--------ECT------TTTTTCTTCCEEECCSSCCCEECTT---
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCc-Cce--------ECH------HHcCCCCCCCEEECCCCccCCcChh---
Confidence            567888642         1367888888888 762        111      2245555555555555555554444   


Q ss_pred             cccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          136 DSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       136 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                       .|..+++|++|+|++|++++..+..+..+++|++|+|++|++
T Consensus       118 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A          118 -AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             -TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred             -hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence             555555555555555555544444455555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.20  E-value=1.5e-11  Score=89.80  Aligned_cols=84  Identities=29%  Similarity=0.265  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .+++.|+++++. +.        +.        ..+..+++|++|++++|++++.+|.    .+..+++|++|++++|++
T Consensus        49 ~~L~~L~l~~n~-l~--------~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l  107 (168)
T 2ell_A           49 VNLEFLSLINVG-LI--------SV--------SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKL  107 (168)
T ss_dssp             GGCCEEEEESSC-CC--------CC--------SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSC
T ss_pred             CCCCEEeCcCCC-CC--------Ch--------hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCcc
Confidence            355666666666 54        21        3377899999999999999998787    777799999999999999


Q ss_pred             CCc-ChhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDS-ILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~-iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++. .+..+..+++|++|++++|+++
T Consensus       108 ~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          108 KDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             CSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             CcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            963 2378999999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.19  E-value=2.6e-11  Score=109.31  Aligned_cols=103  Identities=22%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             CccceEeCCCCCCEEEEEcCCCCCCCCC----------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccC
Q 048227           64 DWEGVKCSATTRRVMQLSLNKTTKFNDS----------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE  127 (179)
Q Consensus        64 ~w~Gv~C~~~~~~v~~l~L~~~~~l~~~----------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~  127 (179)
                      +|..|.+  ...+++.|+|+++. ++.+                ..|.+.+.++     +..|.++++|++|+|++|+++
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-----~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTID-----KEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEEC-----TTTTSSCTTCCEEECTTCCCC
T ss_pred             CCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccC-----HHHhcCCCCCCEEECCCCcCc
Confidence            6777777  24678899999887 7632                2222333332     233556666666666666666


Q ss_pred             ccccCccccccCcccCCCEEeCcCCCCCCcChhh--hCCCCCCCEEeCCCCcC
Q 048227          128 GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY--LNTLTSLTTLILRFNNI  178 (179)
Q Consensus       128 g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~Ls~N~l  178 (179)
                      +..|.    .++.+++|++|+|++|++++.+|..  ++++++|++|+|++|++
T Consensus        87 ~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l  135 (844)
T 3j0a_A           87 FLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI  135 (844)
T ss_dssp             EECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred             ccCHh----HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence            65555    5555666666666666665555443  55555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.19  E-value=2.8e-11  Score=99.56  Aligned_cols=65  Identities=23%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |..+++|++|++++|+++. +|..   .++.+++|++|++++|++++..|..+.++++|++|++++|++
T Consensus       113 ~~~l~~L~~L~L~~n~l~~-l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLSS-LPRG---IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCccCc-CCHH---HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            4555566666666666554 3330   245666666666666666655555666666666666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.18  E-value=4.1e-11  Score=104.12  Aligned_cols=66  Identities=24%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |+.+++|++|+|++|.+++..|.    .|+.+++|++|+|++|.+++..|..|+++++|++|+|++|+++
T Consensus       119 ~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          119 FQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             HcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            56666777777777777653332    3567777777777777777777777777777777777777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.18  E-value=1.1e-10  Score=91.94  Aligned_cols=65  Identities=29%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++..|.    .+..+++|++|++++|++++..+..++++++|++|+|++|++
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            45556666666666666664454    566666667777777666655555566666777777776665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.17  E-value=1.3e-10  Score=91.70  Aligned_cols=65  Identities=28%  Similarity=0.253  Sum_probs=34.6

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++..|.    .+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hcCccccCEEECCCCcccccCHh----HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            34445555555555555554444    455555555555555555554444455555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.17  E-value=6.8e-11  Score=88.71  Aligned_cols=64  Identities=22%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++..|.    .++.+++|++|++++|++.+.+| .+..+++|++|++++|++
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred             hcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC
Confidence            44455555555555555554444    45555555555555554222344 345555555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.17  E-value=9.3e-11  Score=98.72  Aligned_cols=110  Identities=22%  Similarity=0.264  Sum_probs=66.4

Q ss_pred             CccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCC
Q 048227           64 DWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGN  124 (179)
Q Consensus        64 ~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N  124 (179)
                      .|..|.|...         ...++.|+|+++. +..+....|.+--..          ..+.+..|.++++|++|+|++|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4678888642         2367888998888 763221111110000          0011233666677777777777


Q ss_pred             ccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          125 RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       125 ~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++++..+.    .+..+++|++|+|++|++++..|..+.++++|++|+|++|++
T Consensus        91 ~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l  140 (477)
T 2id5_A           91 RLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL  140 (477)
T ss_dssp             CCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred             cCCccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence            77663333    466777777777777777776677777777777777777765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.17  E-value=1.3e-10  Score=100.34  Aligned_cols=94  Identities=23%  Similarity=0.302  Sum_probs=74.0

Q ss_pred             CCEEEEEcCCCCCCCC----------------CCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcccccc
Q 048227           75 RRVMQLSLNKTTKFND----------------SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSF  138 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~----------------~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l  138 (179)
                      .+++.|+++++. +..                +.+|.+.+..|      ..|+++++|++|++++|++++..|.    .+
T Consensus        56 ~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p------~~~~~l~~L~~L~L~~n~l~~~~~~----~~  124 (606)
T 3vq2_A           56 SELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSP------GSFSGLTSLENLVAVETKLASLESF----PI  124 (606)
T ss_dssp             TTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCT------TSSTTCTTCCEEECTTSCCCCSSSS----CC
T ss_pred             ccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccCh------hhcCCcccCCEEEccCCcccccccc----cc
Confidence            456777777766 542                22333334333      3488899999999999999986667    89


Q ss_pred             CcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227          139 GSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       139 ~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +.+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus       125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            999999999999999986 78999999999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=5.9e-11  Score=103.07  Aligned_cols=83  Identities=24%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      ..++.|+|+++. ++         .+|..      ++.+++|++|+|++|+|++ +|     .++.+++|++|+|++|+|
T Consensus       463 ~~L~~L~Ls~N~-l~---------~lp~~------~~~l~~L~~L~Ls~N~l~~-lp-----~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          463 LLVTHLDLSHNR-LR---------ALPPA------LAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             TTCCEEECCSSC-CC---------CCCGG------GGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCC
T ss_pred             ccCcEeecCccc-cc---------ccchh------hhcCCCCCEEECCCCCCCC-Cc-----ccCCCCCCcEEECCCCCC
Confidence            357778887777 65         55544      7889999999999999998 66     689999999999999999


Q ss_pred             CCcC-hhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDSI-LRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~i-P~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++.+ |..++.+++|++|+|++|+|+
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            9887 999999999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.16  E-value=1.3e-10  Score=92.55  Aligned_cols=67  Identities=30%  Similarity=0.379  Sum_probs=45.9

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..+++|++|+|++|++++..|.    .+..+++|++|+|++|++++..+..+.++++|++|+|++|+|+
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             HHcCCCCCCEEECCCCCCCccChh----hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            356677777777777777764444    5667777777777777777544445567777777777777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.16  E-value=8.7e-11  Score=95.03  Aligned_cols=92  Identities=12%  Similarity=0.016  Sum_probs=55.9

Q ss_pred             CCEEEEEcCCCCCCCC---------------CCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccC
Q 048227           75 RRVMQLSLNKTTKFND---------------SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFG  139 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~---------------~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~  139 (179)
                      ..++.|+++++. +.+               +.+|.+.+.+|..      ++.+++|++|++++|++.+.+|.    .++
T Consensus       206 ~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~------~~~l~~L~~L~L~~n~~~~~~p~----~~~  274 (328)
T 4fcg_A          206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI------FGGRAPLKRLILKDCSNLLTLPL----DIH  274 (328)
T ss_dssp             TTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC------TTCCCCCCEEECTTCTTCCBCCT----TGG
T ss_pred             CCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH------hcCCCCCCEEECCCCCchhhcch----hhh
Confidence            357788888877 652               1233333444432      55566666666666666666666    666


Q ss_pred             cccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          140 SLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       140 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      .+++|++|+|++|++.|.+|+.++++++|+.+++..|.
T Consensus       275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            66666666666666666666666666666666665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.16  E-value=6.3e-11  Score=98.90  Aligned_cols=66  Identities=33%  Similarity=0.397  Sum_probs=43.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|+|++|++++..|.    .+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQ----SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hcCcccCCEEECCCCcccccChh----hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            55566666666666666665565    6666677777777777776544455566677777777776653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.16  E-value=2.8e-11  Score=97.06  Aligned_cols=74  Identities=20%  Similarity=0.182  Sum_probs=36.7

Q ss_pred             ccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcc-----cCCCEEeCcCCCCCCcChhhhCCCCCCC
Q 048227           95 LFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSL-----KQLKILNLGDNRFNDSILRYLNTLTSLT  169 (179)
Q Consensus        95 ~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l-----~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  169 (179)
                      .+.|.+|...+    +..+++|++|+|++|++++. |.    .++.+     ++|++|++++|++++..|..++++++|+
T Consensus       106 ~l~~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A          106 EVTGTAPPPLL----EATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             BCBSCCCCCSS----SCCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             cccchhHHHHH----HhcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            33366655421    14455555555555555553 44    44433     4555555555555544444555555555


Q ss_pred             EEeCCCCc
Q 048227          170 TLILRFNN  177 (179)
Q Consensus       170 ~L~Ls~N~  177 (179)
                      +|+|++|+
T Consensus       177 ~L~Ls~N~  184 (312)
T 1wwl_A          177 TLDLSDNP  184 (312)
T ss_dssp             EEECCSCT
T ss_pred             EEECCCCC
Confidence            55555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.16  E-value=5.5e-11  Score=86.80  Aligned_cols=86  Identities=22%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCcc-ccCccccccCcccCCCEEeCcCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL-YENKTYDSFGSLKQLKILNLGDNR  153 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~-iP~~~~~~l~~l~~L~~L~Ls~N~  153 (179)
                      .+++.++++++. +.        +.+|..      +..+++|++|++++|++++. .+.    .+..+++|++|++++|.
T Consensus        71 ~~L~~L~Ls~N~-l~--------~~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           71 PKLKKLELSENR-IF--------GGLDML------AEKLPNLTHLNLSGNKLKDISTLE----PLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             SSCCEEEEESCC-CC--------SCCCHH------HHHCTTCCEEECBSSSCCSSGGGG----GGSSCSCCCEEECCSSG
T ss_pred             CCCCEEECcCCc-Cc--------hHHHHH------HhhCCCCCEEeccCCccCcchhHH----HHhcCCCCCEEEeeCCc
Confidence            467788888877 66        444432      55688999999999999883 225    78889999999999999


Q ss_pred             CCCcCh---hhhCCCCCCCEEeCCCCcCC
Q 048227          154 FNDSIL---RYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       154 l~g~iP---~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +++..+   ..+..+++|++|++++|.++
T Consensus       132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            996554   47889999999999988753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.15  E-value=2.3e-10  Score=89.80  Aligned_cols=64  Identities=31%  Similarity=0.367  Sum_probs=27.6

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      |..+++|++|+|++|++++..+.    .+..+++|++|++++|++++..|..|.++++|++|+|++|+
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKG----VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hCcCcCCCEEECCCCcCCccCHh----HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            34444444444444444442222    23444444444444444443333334444444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.15  E-value=1.3e-10  Score=91.14  Aligned_cols=66  Identities=32%  Similarity=0.417  Sum_probs=46.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |..+++|++|++++|++++..+.    .++.+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             hcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            55666666666666666664444    56777777777777777765 35777777777777777777653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.14  E-value=2.4e-11  Score=106.45  Aligned_cols=85  Identities=12%  Similarity=0.286  Sum_probs=54.2

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCC-----------------CCccccCCccCC--CCCCCcEEeccCCccCccccCccc
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGG-----------------PSASLLNMSLFY--PFEELQNLDLSGNRFEGLYENKTY  135 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~-----------------ip~~~~~~~~l~--~l~~L~~L~Ls~N~l~g~iP~~~~  135 (179)
                      .+++.++|+++. ++        |.                 +|..      ++  ++++|++|+|++|++.|.+|.   
T Consensus       206 ~~L~~L~Ls~n~-l~--------~~~~~~~~~~~~~~~~~~~ip~~------l~~~~l~~L~~L~L~~n~l~~~~p~---  267 (636)
T 4eco_A          206 TKLRQFYMGNSP-FV--------AENICEAWENENSEYAQQYKTED------LKWDNLKDLTDVEVYNCPNLTKLPT---  267 (636)
T ss_dssp             TTCCEEEEESCC-CC--------GGGBSSSCSCTTSHHHHHHTTSC------CCGGGCTTCCEEEEECCTTCSSCCT---
T ss_pred             cCCCEEECcCCc-cc--------cccccccccccccchhcccCchh------hhhcccCCCCEEEecCCcCCccChH---
Confidence            467888888887 77        43                 4443      45  566666666666666666666   


Q ss_pred             cccCcccCCCEEeCcCCC-CCC-cChhhhCCC------CCCCEEeCCCCcC
Q 048227          136 DSFGSLKQLKILNLGDNR-FND-SILRYLNTL------TSLTTLILRFNNI  178 (179)
Q Consensus       136 ~~l~~l~~L~~L~Ls~N~-l~g-~iP~~l~~l------~~L~~L~Ls~N~l  178 (179)
                       .++++++|++|++++|+ ++| .+|..++++      ++|++|++++|++
T Consensus       268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          268 -FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             -HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence             66666666666666666 666 566655554      5566666665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.14  E-value=7.2e-11  Score=88.59  Aligned_cols=82  Identities=21%  Similarity=0.359  Sum_probs=58.8

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .+++.++++++. +.         .+       ..+..+++|++|++++|++++..|.    .++.+++|++|++++|++
T Consensus        66 ~~L~~L~l~~n~-~~---------~~-------~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           66 HNIKDLTINNIH-AT---------NY-------NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             TTCSEEEEESCC-CS---------CC-------GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBC
T ss_pred             CCCCEEEccCCC-CC---------cc-------hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCcc
Confidence            356777777776 54         11       1256677777777777777776666    777777777777777777


Q ss_pred             CCcChhhhCCCCCCCEEeCCCCc
Q 048227          155 NDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       155 ~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      ++..|..++.+++|++|++++|+
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCT
T ss_pred             CcHhHHHHhhCCCCCEEEccCCC
Confidence            77777777777777777777776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.14  E-value=8.1e-11  Score=101.67  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL  144 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L  144 (179)
                      ..++.|+++++. ++.+....|.+---.          ..+.+..|.++++|++|+|++|++++..|.    .++.+++|
T Consensus        33 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTC
T ss_pred             CcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh----hhcccccc
Confidence            468899999988 762211111100000          001122355566666666666666655555    56666666


Q ss_pred             CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++++|++++..|..++++++|++|++++|++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence            6666666666654455566666666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.13  E-value=2.4e-10  Score=91.02  Aligned_cols=64  Identities=23%  Similarity=0.252  Sum_probs=43.5

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |..+++|++|+|++|++++..+.    .+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.+
T Consensus       144 ~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccCCCEEECCCCcCCccCHH----HhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            55667777777777777753333    4566777777777777777 5677676777777777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.13  E-value=2.2e-10  Score=95.77  Aligned_cols=95  Identities=26%  Similarity=0.314  Sum_probs=48.0

Q ss_pred             ccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccc
Q 048227           65 WEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTY  135 (179)
Q Consensus        65 w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~  135 (179)
                      |..|.|...         ...++.|+|+++. +..+..              ..|.++++|++|+|++|++++..|.   
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~~~~--------------~~~~~l~~L~~L~Ls~n~i~~i~~~---  106 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQ-IQIIKV--------------NSFKHLRHLEILQLSRNHIRTIEIG---  106 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCC-CCEECT--------------TTTSSCSSCCEEECCSSCCCEECGG---
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCc-CCeeCH--------------HHhhCCCCCCEEECCCCcCCccChh---
Confidence            567888642         1356778888887 762211              2244445555555555555443333   


Q ss_pred             cccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          136 DSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       136 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                       .|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus       107 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A          107 -AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             -GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             -hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence             444445555555555555433333444444455555544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.12  E-value=1.9e-10  Score=90.24  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=65.0

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK  145 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~  145 (179)
                      .++.|+++++. +..+....|.+--...          .+....|..+++|++|++++|++++..|.    .+..+++|+
T Consensus        29 ~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~  103 (276)
T 2z62_A           29 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQ  103 (276)
T ss_dssp             TCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCC
T ss_pred             CccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh----hhcCCcccc
Confidence            57888888887 6632221111100000          11123466777888888888888776656    677888888


Q ss_pred             EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +|++++|++++..+..++++++|++|++++|+++
T Consensus       104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCccccCchhcccCCCCCEEECcCCccc
Confidence            8888888888666667788888888888888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=2.3e-10  Score=93.59  Aligned_cols=99  Identities=25%  Similarity=0.285  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL  144 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L  144 (179)
                      .+++.|+|+++. +..+....|.+--...          .+....|..+++|++|+|++|++++..|.    .|..+++|
T Consensus        64 ~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L  138 (361)
T 2xot_A           64 TNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN----AFEDMAQL  138 (361)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTC
T ss_pred             cccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH----HhCCcccC
Confidence            457777777777 6533222221110000          11223478899999999999999997777    89999999


Q ss_pred             CEEeCcCCCCCCcChhh-h---CCCCCCCEEeCCCCcCC
Q 048227          145 KILNLGDNRFNDSILRY-L---NTLTSLTTLILRFNNIE  179 (179)
Q Consensus       145 ~~L~Ls~N~l~g~iP~~-l---~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|+|++|+|++ +|.. +   ..+++|++|+|++|+|+
T Consensus       139 ~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          139 QKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999999999996 5544 4   67999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.12  E-value=1.6e-10  Score=101.17  Aligned_cols=67  Identities=28%  Similarity=0.354  Sum_probs=48.9

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|+.+++|++|++++|++++..|.    .++.+++|++|++++|++++..|..++++++|++|++++|+++
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            366677777777777777765555    6777777777777777777777777777777777777777653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.11  E-value=1.6e-10  Score=91.84  Aligned_cols=65  Identities=34%  Similarity=0.417  Sum_probs=42.0

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++..|.    .+..+++|++|++++|++++..+..+..+++|++|+|++|++
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             HhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            55566666666666666665555    566666666666666666655555666666677777766665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.11  E-value=2.9e-10  Score=98.72  Aligned_cols=67  Identities=25%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|+.+++|++|+|++|.+++..|.    .++.+++|++|+|++|.+++..|..|+++++|++|+|++|+++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~  160 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE  160 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence            378889999999999999986666    7889999999999999999655555789999999999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.10  E-value=1.4e-10  Score=85.51  Aligned_cols=82  Identities=21%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      .++.++++++. +.        + +       ..+..+++|++|++++|++++ +|+.   .+..+++|++|++++|+++
T Consensus        43 ~L~~L~Ls~N~-l~--------~-~-------~~l~~l~~L~~L~Ls~N~l~~-~~~~---~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           43 QFDAIDFSDNE-IR--------K-L-------DGFPLLRRLKTLLVNNNRICR-IGEG---LDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             CCSEEECCSSC-CC--------E-E-------CCCCCCSSCCEEECCSSCCCE-ECSC---HHHHCTTCCEEECCSCCCC
T ss_pred             CCCEEECCCCC-CC--------c-c-------cccccCCCCCEEECCCCcccc-cCcc---hhhcCCCCCEEECCCCcCC
Confidence            56777777776 65        2 1       237788999999999999997 5540   3488999999999999996


Q ss_pred             CcChh--hhCCCCCCCEEeCCCCcCC
Q 048227          156 DSILR--YLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       156 g~iP~--~l~~l~~L~~L~Ls~N~lt  179 (179)
                       .+|.  .+..+++|++|++++|+++
T Consensus       102 -~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A          102 -ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             -CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             -cchhhHhhhcCCCCCEEEecCCCCC
Confidence             6776  7889999999999999863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=1.5e-10  Score=100.44  Aligned_cols=80  Identities=24%  Similarity=0.326  Sum_probs=71.2

Q ss_pred             CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227           76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus        76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      .++.|+|+++. ++        + +|.       ++.+++|++|+|++|+|+ .+|.    .++.+++|+.|+|++|+|+
T Consensus       442 ~L~~L~Ls~n~-l~--------~-lp~-------~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          442 DVRVLHLAHKD-LT--------V-LCH-------LEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             TCSEEECTTSC-CS--------S-CCC-------GGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCC
T ss_pred             CceEEEecCCC-CC--------C-CcC-------ccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCC
Confidence            46779999998 87        3 442       778899999999999999 6998    9999999999999999999


Q ss_pred             CcChhhhCCCCCCCEEeCCCCcCC
Q 048227          156 DSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       156 g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      + +| .++++++|++|+|++|+|+
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCC
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCC
Confidence            7 78 8999999999999999985

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.09  E-value=1.8e-10  Score=91.61  Aligned_cols=68  Identities=28%  Similarity=0.343  Sum_probs=57.6

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCC-CCCEEeCCCCcCC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLT-SLTTLILRFNNIE  179 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~Ls~N~lt  179 (179)
                      ..+..+++|++|++++|++++..+.    .+..+++|++|++++|++++..|..+..++ +|++|+|++|+++
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTF----PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSG----GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             HHhcCCCCCCEEECCCCccCccChh----hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            3477788999999999999886665    678889999999999999998888888884 8999999999763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.09  E-value=2.2e-10  Score=92.28  Aligned_cols=102  Identities=21%  Similarity=0.279  Sum_probs=62.3

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCCC
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEEL  116 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~L  116 (179)
                      | .|..+.|...         ..+++.|+++++. +..+.                +|.+.+.      .+..|.++++|
T Consensus        33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L  104 (332)
T 2ft3_A           33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKI------HEKAFSPLRKL  104 (332)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE------CGGGSTTCTTC
T ss_pred             c-cCCEEECCCCCccccCCCCCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCcc------CHhHhhCcCCC
Confidence            6 7999999742         1367888888887 76221                1111111      11235556666


Q ss_pred             cEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          117 QNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       117 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++++|+++. +|.    .+.  ++|++|++++|++++..+..+.++++|++|++++|++
T Consensus       105 ~~L~L~~n~l~~-l~~----~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          105 QKLYISKNHLVE-IPP----NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CEEECCSSCCCS-CCS----SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CEEECCCCcCCc-cCc----ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            666666666653 554    333  5666666666666654455677788888888888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.09  E-value=1.1e-10  Score=89.88  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCC-----------ccccCCccCCCCCCCcEEeccC-CccCccccCccccccCccc
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPS-----------ASLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLK  142 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip-----------~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~~~~~l~~l~  142 (179)
                      ..++.++++++. ++.+....|.+---           ...+....|..+++|++|++++ |++++..|.    .+..++
T Consensus        31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKELP  105 (239)
T ss_dssp             TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT----SEECCT
T ss_pred             CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCCCC
Confidence            468889999888 76322211111000           0001112344555555555555 555553333    455555


Q ss_pred             CCCEEeCcCCCCCCcChhhhCCCCCCC---EEeCCCC
Q 048227          143 QLKILNLGDNRFNDSILRYLNTLTSLT---TLILRFN  176 (179)
Q Consensus       143 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~---~L~Ls~N  176 (179)
                      +|++|++++|++++ +|. ++.+++|+   +|++++|
T Consensus       106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred             CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence            56666666666554 454 55555555   6666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.09  E-value=2.2e-10  Score=92.13  Aligned_cols=67  Identities=22%  Similarity=0.283  Sum_probs=58.5

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..+..+++|++|++++|++++..|.    .+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            3477889999999999999987776    7888999999999999998 78888999999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.08  E-value=5.5e-10  Score=91.73  Aligned_cols=66  Identities=27%  Similarity=0.316  Sum_probs=55.9

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChh-hhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR-YLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..+++|++|++++|++++..|.    .++.+++|++|++++|+++. +|. .++++++|++|++++|+++
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~  154 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE  154 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccC
Confidence            478889999999999999986666    78899999999999999984 554 4688999999999999764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.08  E-value=4.4e-10  Score=90.31  Aligned_cols=103  Identities=21%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCC
Q 048227           61 CCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEE  115 (179)
Q Consensus        61 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~  115 (179)
                      .| .|..+.|...         ...++.++++++. ++.+.                +|.+.+..      +..|..+++
T Consensus        30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~  101 (330)
T 1xku_A           30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKIS------PGAFAPLVK  101 (330)
T ss_dssp             EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBC------TTTTTTCTT
T ss_pred             cC-CCeEEEecCCCccccCccCCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeC------HHHhcCCCC
Confidence            36 7888999741         2357788888887 76221                11111111      122445555


Q ss_pred             CcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       116 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |++|++++|+++. +|.    .+.  ++|++|++++|++++..|..+.++++|++|++++|++
T Consensus       102 L~~L~Ls~n~l~~-l~~----~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  157 (330)
T 1xku_A          102 LERLYLSKNQLKE-LPE----KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL  157 (330)
T ss_dssp             CCEEECCSSCCSB-CCS----SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCc-cCh----hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence            5555555555553 444    332  4566666666666655566677778888888887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.06  E-value=4.2e-10  Score=95.61  Aligned_cols=85  Identities=16%  Similarity=0.153  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCc--cccCccccccCcccCCCEEeCcCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEG--LYENKTYDSFGSLKQLKILNLGDN  152 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g--~iP~~~~~~l~~l~~L~~L~Ls~N  152 (179)
                      ..++.++++++. +.        +.+|..      +..+++|++|++++|++++  .+|.    .++.+++|++|++++|
T Consensus       324 ~~L~~L~Ls~n~-l~--------~~~~~~------~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          324 SPFLHLDFSNNL-LT--------DTVFEN------CGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQN  384 (520)
T ss_dssp             CCCCEEECCSSC-CC--------TTTTTT------CCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSS
T ss_pred             CcccEEEeECCc-cC--------hhhhhh------hccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCC
Confidence            356666666666 55        544433      4555555666666665554  3444    4555555555555555


Q ss_pred             CCCCcChhh-hCCCCCCCEEeCCCCcC
Q 048227          153 RFNDSILRY-LNTLTSLTTLILRFNNI  178 (179)
Q Consensus       153 ~l~g~iP~~-l~~l~~L~~L~Ls~N~l  178 (179)
                      ++++.+|.. +..+++|++|++++|++
T Consensus       385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          385 SVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             CCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             cCCcccccchhccCccCCEEECcCCCC
Confidence            555545543 44455555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.05  E-value=2e-10  Score=92.55  Aligned_cols=66  Identities=26%  Similarity=0.345  Sum_probs=54.5

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .+..+++|++|++++|++++..|.    .+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       212 ~l~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          212 DLLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             SSTTCTTCSCCBCCSSCCCCCCTT----GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             HhcCCCCCCEEECCCCcCCcCChh----HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            367788888888888888886666    7788888888888888888 78888888888888888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.05  E-value=3.6e-10  Score=83.29  Aligned_cols=82  Identities=26%  Similarity=0.283  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCC-CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPF-EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR  153 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l-~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~  153 (179)
                      ..++.++++++. +.         .+|.       +..+ ++|++|++++|++++.  +    .++.+++|++|++++|+
T Consensus        19 ~~L~~L~l~~n~-l~---------~i~~-------~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           19 VRDRELDLRGYK-IP---------VIEN-------LGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             TSCEEEECTTSC-CC---------SCCC-------GGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSC
T ss_pred             CCceEEEeeCCC-Cc---------hhHH-------hhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCc
Confidence            468999999998 76         2221       3334 4899999999999984  4    78999999999999999


Q ss_pred             CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          154 FNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       154 l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +++..|..+..+++|++|+|++|+++
T Consensus        76 l~~~~~~~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           76 ICRIGEGLDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             CCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             ccccCcchhhcCCCCCEEECCCCcCC
Confidence            99654455689999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.05  E-value=6.6e-11  Score=95.01  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             CccceEeCCCCCCEEEEEcCCCCCCC---------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCc
Q 048227           64 DWEGVKCSATTRRVMQLSLNKTTKFN---------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEG  128 (179)
Q Consensus        64 ~w~Gv~C~~~~~~v~~l~L~~~~~l~---------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g  128 (179)
                      .|.++.|+.  ..++.++++++. +.               ++..|.+.+.++.       +..+++|++|++++|.+++
T Consensus        38 ~W~~~~~~~--~~~~~l~l~~~~-~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           38 RWYRLASDE--SLWQTLDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             HHHHHHTCS--TTSSEEECTTCB-CCHHHHHHHHHTTCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHhcCc--hhheeecccccc-CCHHHHHhhhhccceEEEcCCccccccchh-------hccCCCCCEEEccCCCcCH
Confidence            688877763  346677777654 33               1334444454433       3456677777777777765


Q ss_pred             c-ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          129 L-YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       129 ~-iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      . +|.    .+..+++|++|++++|++++.+|..++++++|++|++++|
T Consensus       108 ~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          108 STLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             HHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             HHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            5 665    5666777777777777777666767777777777777766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.05  E-value=2.2e-10  Score=97.38  Aligned_cols=64  Identities=30%  Similarity=0.359  Sum_probs=52.0

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|.++++|++|+|++|+++. +|.    .  .+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus        64 ~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           64 VFKFNQELEYLDLSHNKLVK-ISC----H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             GGTTCTTCCEEECCSSCCCE-EEC----C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             HhhcccCCCEEecCCCceee-cCc----c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            47778888888888888884 776    5  78888888888888887 57888888888888888888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=7.9e-11  Score=106.90  Aligned_cols=93  Identities=14%  Similarity=0.222  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCCCCCCC---------CcCccCCCCCccccCCccCC--CCCCCcEEeccCCccCccccCccccccCcccC
Q 048227           75 RRVMQLSLNKTTKFNDS---------NYNLFYGGPSASLLNMSLFY--PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQ  143 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~---------~~n~~~g~ip~~~~~~~~l~--~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~  143 (179)
                      .+++.|+|+++. +++.         ..|.+.|.+|..      ++  ++++|++|+|++|++.|.+|.    .++++++
T Consensus       448 ~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~------l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~  516 (876)
T 4ecn_A          448 TKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE------LSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPE  516 (876)
T ss_dssp             TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC------CCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSS
T ss_pred             CCCCEEECcCCc-CCCCcccccccccccccccccCChh------hhhccCCCCCEEECcCCCCCccChH----HHhCCCC
Confidence            468888888888 7730         001111135543      44  566666666666666666666    6666666


Q ss_pred             CCEEeCcCCC-CCC-cChhhhCCCC-------CCCEEeCCCCcC
Q 048227          144 LKILNLGDNR-FND-SILRYLNTLT-------SLTTLILRFNNI  178 (179)
Q Consensus       144 L~~L~Ls~N~-l~g-~iP~~l~~l~-------~L~~L~Ls~N~l  178 (179)
                      |++|+|++|+ ++| .+|..+++++       +|++|+|++|++
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            6666666665 666 5665544443       555555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.04  E-value=4.4e-10  Score=96.67  Aligned_cols=64  Identities=28%  Similarity=0.389  Sum_probs=45.9

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..+++|++|+|++|+++. +|.    .  .+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus        95 ~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B           95 VFLFNQDLEYLDVSHNRLQN-ISC----C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TTTTCTTCCEEECTTSCCCE-ECS----C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             HhCCCCCCCEEECCCCcCCc-cCc----c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            36667777777777777763 665    4  67777777777777775 45677777888888888777753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.04  E-value=1.8e-10  Score=93.82  Aligned_cols=99  Identities=19%  Similarity=0.261  Sum_probs=77.9

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN  132 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~  132 (179)
                      | .|..|.|...         ...++.|+|+++. ++         .||     ...|.++++|++|+|++|++.+.+|.
T Consensus         9 C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~-i~---------~i~-----~~~f~~l~~L~~L~Ls~N~i~~~i~~   72 (350)
T 4ay9_X            9 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LR---------VIQ-----KGAFSGFGDLEKIEISQNDVLEVIEA   72 (350)
T ss_dssp             E-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCC-CS---------EEC-----TTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred             e-eCCEEEecCCCCCccCcCcCCCCCEEEccCCc-CC---------CcC-----HHHHcCCCCCCEEECcCCCCCCccCh
Confidence            7 7889999642         1357888888888 76         333     24488899999999999999888876


Q ss_pred             ccccccCcccCCCE-EeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          133 KTYDSFGSLKQLKI-LNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       133 ~~~~~l~~l~~L~~-L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .   .|.+++++++ ++++.|+++...|..|..+++|++|++++|+++
T Consensus        73 ~---~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           73 D---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             T---SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             h---HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc
Confidence            3   5678887765 677789999777888999999999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.04  E-value=5.9e-10  Score=93.51  Aligned_cols=65  Identities=31%  Similarity=0.416  Sum_probs=34.2

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|+|++|++++..|.    .+..+++|++|++++|++++..|..|..+++|++|+|++|+|
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            44455555555555555554444    455555555555555555554455555555555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.04  E-value=2.6e-10  Score=91.22  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=35.8

Q ss_pred             CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc--Chh--hhCCCCCCCEEeCCCCcC
Q 048227          112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS--ILR--YLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~--iP~--~l~~l~~L~~L~Ls~N~l  178 (179)
                      .+++|++|+|++|++++..|.    .++.+++|++|+|++|++.+.  +|.  .++.+++|++|+|++|++
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             hccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence            355666666666666554444    556666666666666665542  221  224566666666666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.04  E-value=5.6e-10  Score=95.45  Aligned_cols=99  Identities=19%  Similarity=0.220  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL  144 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L  144 (179)
                      .+++.|+++++. ++++....|.+---.          ..+.+..|.++++|++|+|++|++++..|.    .++.+++|
T Consensus        28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTC
T ss_pred             ccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh----hhcCcccc
Confidence            467888888887 663222111110000          011123466777777777777777775556    67777778


Q ss_pred             CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++++|++++..+..++++++|++|++++|++
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  136 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  136 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccCCCccccccccccEEecCCCcc
Confidence            8888888877754444677788888888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.03  E-value=4.7e-10  Score=95.94  Aligned_cols=65  Identities=32%  Similarity=0.436  Sum_probs=42.3

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++..|.    .+..+++|++|++++|++++..|..+.++++|++|++++|++
T Consensus       466 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          466 FTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhcccCCCEEECCCCccccCChh----hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            45566666666666666665555    666666666666666666666556666666666666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.03  E-value=5.2e-10  Score=96.64  Aligned_cols=65  Identities=20%  Similarity=0.124  Sum_probs=41.4

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |+.+++|++|++++|++++..|.    .++.+++|++|++++|++++..++.+..+++|++|++++|++
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGGS----CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             hcccccccEeeccccCcccCCcc----hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            56667777777777777664455    666677777777777777653323333466777777777665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.02  E-value=9.8e-10  Score=96.21  Aligned_cols=65  Identities=29%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhC--CCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLN--TLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~--~l~~L~~L~Ls~N~l  178 (179)
                      |+++++|++|++++|.+++..|.    .++.+++|++|++++|++++..|..+.  .+++|++|++++|++
T Consensus       117 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          117 FVKQKNLITLDLSHNGLSSTKLG----TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCCC----SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             ccccCCCCEEECCCCcccccCch----hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            44455555555555555554444    445555555555555555544444332  334555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.02  E-value=5.4e-10  Score=93.46  Aligned_cols=93  Identities=19%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             CCEEEEEcCCCCCCCCC--------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCc
Q 048227           75 RRVMQLSLNKTTKFNDS--------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGS  140 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~--------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~  140 (179)
                      ..++.|+++++. ++.+              .+|.+.+..      +..|..+++|++|+|++|++++..|.    .+..
T Consensus       185 ~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~  253 (440)
T 3zyj_A          185 SNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIR------PGSFQGLMHLQKLWMIQSQIQVIERN----AFDN  253 (440)
T ss_dssp             SSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTCCCCEECTT----SSTT
T ss_pred             cccCeecCCCCc-CccccccCCCcccCEEECCCCccCccC------hhhhccCccCCEEECCCCceeEEChh----hhcC
Confidence            357788888887 6632              222222221      23366777777777777777776666    7777


Q ss_pred             ccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          141 LKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +++|++|+|++|++++..+..+..+++|++|+|++|.+
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            78888888888888866666677788888888888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.02  E-value=1.7e-10  Score=92.42  Aligned_cols=65  Identities=23%  Similarity=0.271  Sum_probs=33.5

Q ss_pred             CCCCCCCcEEeccCCccCcc--ccCcccccc--CcccCCCEEeCcCCCCCC--cCh-hhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGL--YENKTYDSF--GSLKQLKILNLGDNRFND--SIL-RYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~--iP~~~~~~l--~~l~~L~~L~Ls~N~l~g--~iP-~~l~~l~~L~~L~Ls~N~l  178 (179)
                      |+.+++|++|++++|++.|.  +|.    .+  +.+++|++|++++|++++  .+| ..+.++++|++|+|++|++
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             hccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence            45555555666655555543  222    22  555556666666666552  222 2234555666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.02  E-value=6e-10  Score=93.76  Aligned_cols=68  Identities=32%  Similarity=0.408  Sum_probs=63.1

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..|.++++|++|+|++|++++..|.    .+..+++|++|++++|++++..|..|.++++|++|+|++|+++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            3478899999999999999998888    8999999999999999999988999999999999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.01  E-value=7.5e-10  Score=94.21  Aligned_cols=101  Identities=19%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             CccceEeCCCCCCEEEEEcCCCCCCCC----------------CCcCccCCCCCccccCCccCC-CCCCCcEEeccCCcc
Q 048227           64 DWEGVKCSATTRRVMQLSLNKTTKFND----------------SNYNLFYGGPSASLLNMSLFY-PFEELQNLDLSGNRF  126 (179)
Q Consensus        64 ~w~Gv~C~~~~~~v~~l~L~~~~~l~~----------------~~~n~~~g~ip~~~~~~~~l~-~l~~L~~L~Ls~N~l  126 (179)
                      .+.++.|.. -..++.|+++++. +.+                +++|.+.+.+|..      +. .+++|++|+|++|.+
T Consensus       110 ~l~~~~~~~-l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          110 NISRVSCSR-GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE------LAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCCCEEECC-CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG------GGGGTTTCCEEECTTSCC
T ss_pred             cCCCCCccc-cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHH------HhhhCCcccEEecCCCcc
Confidence            455566653 3456777777776 652                1223333322221      32 566777777777777


Q ss_pred             CccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          127 EGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       127 ~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++. |     ....+++|++|+|++|++++ +|+.+..+++|++|+|++|+|+
T Consensus       182 ~~~-~-----~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          182 YDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             CEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred             ccc-c-----ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc
Confidence            763 3     23457888888888888886 4445888888888888888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.00  E-value=1e-09  Score=94.40  Aligned_cols=65  Identities=25%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|++++|++++.+|..   .+..+++|++|++++|++++.+|..+.  ++|++|+|++|+++
T Consensus       399 ~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          399 TKNMSSLETLDVSLNSLNSHAYDR---TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             TTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             hcCCCCCCEEECCCCcCCCccChh---hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence            445555666666666665544441   245556666666666666655555443  56666666666653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.95  E-value=6.2e-10  Score=94.96  Aligned_cols=84  Identities=31%  Similarity=0.436  Sum_probs=53.3

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .+++.++++++. +.        +..|      ..|..+++|++|++++|++++..|.    .++.+++|++|++++|++
T Consensus        50 ~~L~~L~Ls~n~-i~--------~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           50 ANLQVLILKSSR-IN--------TIEG------DAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             TTCCEEECTTSC-CC--------EECT------TTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCC
T ss_pred             CcccEEECCCCC-cC--------ccCh------hhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcc
Confidence            468888998888 76        2222      2255666666666666666664444    466666666666666666


Q ss_pred             CC-cChhhhCCCCCCCEEeCCCCc
Q 048227          155 ND-SILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       155 ~g-~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      ++ .+|..++++++|++|++++|+
T Consensus       111 ~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          111 QTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             cccchhhhhhccCCccEEECCCCc
Confidence            64 345566666666666666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.95  E-value=1.1e-09  Score=98.84  Aligned_cols=67  Identities=25%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccc--cCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDS--FGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~--l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|.++++|++|+|++|.+++.+|.    .  ++.+++|++|+|++|++++..| ..|+++++|++|+|++|+++
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCST----TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             HccCCcccCEeeCcCCCCCccccc----CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            378888888888888888887765    4  7888888888888888887655 57888888888888888763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.92  E-value=8.6e-10  Score=98.28  Aligned_cols=143  Identities=16%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             CChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCCCCCEEEEEcCCCCCCC--------
Q 048227           18 ACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFN--------   89 (179)
Q Consensus        18 ~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~--------   89 (179)
                      +..+.++++|++++..+.     ...+.....|....    ...+ .|.++.+..  .+++.++|.++. +.        
T Consensus       128 s~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~----~~~~-~~~~~~~s~--~~~~~l~L~~n~-~~~~~~~~l~  194 (727)
T 4b8c_D          128 SLVDCTKQALMEMADTLT-----DSKTAKKQQPTGDS----TPSG-TATNSAVST--PLTPKIELFANG-KDEANQALLQ  194 (727)
T ss_dssp             ----CCCHHHHHHHHHHH-----HHHTTC---------------------------------------------------
T ss_pred             hccccchhhhhhhhhhcc-----cccCcccCCCcCCC----Cccc-cCCCceecC--CccceEEeeCCC-CCcchhhHhh
Confidence            345678899999998875     22222345575532    3456 898888864  566776665544 32        


Q ss_pred             --CCCcCccCCC--------CCcc---------ccC---------CccCCCCCCCcEEeccCCccCccccCccccccCcc
Q 048227           90 --DSNYNLFYGG--------PSAS---------LLN---------MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSL  141 (179)
Q Consensus        90 --~~~~n~~~g~--------ip~~---------~~~---------~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l  141 (179)
                        .+..|.+.+.        +++.         .++         +..+..+++|++|+|++|.|+ .+|.    .++.|
T Consensus       195 ~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l  269 (727)
T 4b8c_D          195 HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA----EIKNL  269 (727)
T ss_dssp             ---------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG----GGGGG
T ss_pred             cCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh----hhhCC
Confidence              1122222110        0000         000         112446788899999999988 6888    88899


Q ss_pred             cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred             CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence            99999999999998 78988999999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.91  E-value=2e-09  Score=86.32  Aligned_cols=98  Identities=24%  Similarity=0.288  Sum_probs=69.6

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCc-cccC--------CccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA-SLLN--------MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK  145 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~-~~~~--------~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~  145 (179)
                      ..++.|+++++. +.......+.+.++. ..++        ......+++|++|+|++|++++ +|+    .+..+++|+
T Consensus       144 ~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~  217 (317)
T 3o53_A          144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGP----EFQSAAGVT  217 (317)
T ss_dssp             SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECG----GGGGGTTCS
T ss_pred             CCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc-chh----hhcccCccc
Confidence            468888888887 763221111111110 0000        0113347899999999999997 666    788899999


Q ss_pred             EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             EEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            9999999999 68888999999999999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.91  E-value=2.2e-09  Score=85.76  Aligned_cols=76  Identities=22%  Similarity=0.225  Sum_probs=54.7

Q ss_pred             CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEE
Q 048227           92 NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTL  171 (179)
Q Consensus        92 ~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  171 (179)
                      ++|.+.+.+|.....   +..+++|++|+|++|+++ .+|.    .+.  ++|++|+|++|++++. |. +..+++|++|
T Consensus       232 s~N~l~~~~p~~~~~---~~~~~~L~~L~Ls~N~l~-~lp~----~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  299 (310)
T 4glp_A          232 SHNSLRATVNPSAPR---CMWSSALNSLNLSFAGLE-QVPK----GLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL  299 (310)
T ss_dssp             TTSCCCCCCCSCCSS---CCCCTTCCCEECCSSCCC-SCCS----CCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred             CCCCCCccchhhHHh---ccCcCcCCEEECCCCCCC-chhh----hhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence            445555665544111   222368999999999998 4787    554  7899999999999863 44 5778899999


Q ss_pred             eCCCCcCC
Q 048227          172 ILRFNNIE  179 (179)
Q Consensus       172 ~Ls~N~lt  179 (179)
                      +|++|+|+
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            99999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.89  E-value=2.2e-09  Score=86.49  Aligned_cols=64  Identities=22%  Similarity=0.272  Sum_probs=48.3

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|++++|++++..|.    .++.+++|++|++++|++++..|  +..+++|++|++++|+|+
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            56677888888888888877766    77788888888888888886555  777888888888888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.87  E-value=2.3e-09  Score=91.25  Aligned_cols=61  Identities=23%  Similarity=0.290  Sum_probs=28.3

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhC-CCCCCCEEeCCCCcC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLN-TLTSLTTLILRFNNI  178 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~L~Ls~N~l  178 (179)
                      ++|++|+|++|.+++..|.    .++.+++|++|+|++|++++.+|..+. .+++|++|+|++|+|
T Consensus       120 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            3444444444444444444    444444444444444444444444443 344444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.87  E-value=6.9e-09  Score=82.45  Aligned_cols=62  Identities=31%  Similarity=0.471  Sum_probs=45.5

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|++++|++++.  +    .+..+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       130 l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            55677777777777777763  3    67777888888888888876444  777788888888887764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.83  E-value=1.8e-08  Score=81.69  Aligned_cols=88  Identities=23%  Similarity=0.315  Sum_probs=72.4

Q ss_pred             cceEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227           66 EGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK  145 (179)
Q Consensus        66 ~Gv~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~  145 (179)
                      ....|..  ..+  .+++++. ++         .+|..      +.  ++|++|++++|++++..+.    .+..+++|+
T Consensus        26 ~~~~C~~--~~~--c~~~~~~-l~---------~iP~~------~~--~~L~~L~l~~n~i~~~~~~----~~~~l~~L~   79 (353)
T 2z80_A           26 ASLSCDR--NGI--CKGSSGS-LN---------SIPSG------LT--EAVKSLDLSNNRITYISNS----DLQRCVNLQ   79 (353)
T ss_dssp             -CCEECT--TSE--EECCSTT-CS---------SCCTT------CC--TTCCEEECTTSCCCEECTT----TTTTCTTCC
T ss_pred             cCCCCCC--CeE--eeCCCCC-cc---------ccccc------cc--ccCcEEECCCCcCcccCHH----HhccCCCCC
Confidence            5678875  233  7888887 76         55543      22  5899999999999986665    789999999


Q ss_pred             EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +|++++|++++..|..++++++|++|+|++|+++
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            9999999999888889999999999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.82  E-value=1.1e-08  Score=82.42  Aligned_cols=65  Identities=28%  Similarity=0.406  Sum_probs=58.5

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .+..+++|++|++++|++++ +|     .+..+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISD-IS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             hHhcCCCcCEEEccCCccCC-Ch-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            36788999999999999988 44     6888999999999999999999999999999999999999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.80  E-value=2e-08  Score=78.68  Aligned_cols=58  Identities=33%  Similarity=0.427  Sum_probs=43.4

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++|++|++++|++++ +|     .+..+++|++|++++|++++ +| .+..+++|++|+|++|+++
T Consensus       106 ~~L~~L~L~~N~l~~-~~-----~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          106 ACLSRLFLDNNELRD-TD-----SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             SSCCEEECCSSCCSB-SG-----GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred             CcccEEEccCCccCC-Ch-----hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence            566677777777666 33     57788888888888888885 44 5778888888888888764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.80  E-value=6.2e-09  Score=81.62  Aligned_cols=87  Identities=20%  Similarity=0.317  Sum_probs=69.6

Q ss_pred             CCEEEEEcCCCCCCCCCC-------------cCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcc
Q 048227           75 RRVMQLSLNKTTKFNDSN-------------YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSL  141 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~-------------~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l  141 (179)
                      .+++.++++++. ++++.             +|.+.+        ...+..+++|++|++++|++++ +|     .+..+
T Consensus        85 ~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~--------~~~l~~l~~L~~L~Ls~N~i~~-~~-----~l~~l  149 (263)
T 1xeu_A           85 TKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRD--------TDSLIHLKNLEILSIRNNKLKS-IV-----MLGFL  149 (263)
T ss_dssp             SSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSB--------SGGGTTCTTCCEEECTTSCCCB-CG-----GGGGC
T ss_pred             CCCCEEECCCCc-cCCcCccccCcccEEEccCCccCC--------ChhhcCcccccEEECCCCcCCC-Ch-----HHccC
Confidence            467888888887 76422             222222        1237889999999999999998 44     68899


Q ss_pred             cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++|++++|++++.  ..+..+++|++|++++|++
T Consensus       150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            9999999999999976  7789999999999999975

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.79  E-value=1.8e-08  Score=88.15  Aligned_cols=62  Identities=31%  Similarity=0.471  Sum_probs=41.5

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|+.|+|++|++++.  +    .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|+|+
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCccCEEECCCCccCCc--h----hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            55566777777777777663  3    56667777777777777776544  666777777777776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.79  E-value=1.7e-08  Score=80.89  Aligned_cols=61  Identities=21%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .+++|++|++++|++++. |     ....+++|++|++++|++++ +|+.+..+++|++|+|++|+++
T Consensus       167 ~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             GTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred             ccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence            456677777777776663 3     23457888888888888884 5555888888888888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.79  E-value=2e-08  Score=80.33  Aligned_cols=61  Identities=30%  Similarity=0.402  Sum_probs=33.9

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++ +|     .++.+++|++|++++|++++ +|. +..+++|++|++++|++
T Consensus       125 l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITN-IS-----PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-----GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCccCc-Cc-----cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence            3444555555555555544 22     24555666666666666664 333 56666666666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.78  E-value=2.5e-08  Score=79.71  Aligned_cols=62  Identities=24%  Similarity=0.382  Sum_probs=44.5

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|++++|++++ +|     .+..+++|++|++++|++++. |. +..+++|++|+|++|+++
T Consensus       147 l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSD-LT-----PLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCC
T ss_pred             ccCCCCccEEEccCCcCCC-Ch-----hhcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccC
Confidence            5567778888888887776 43     366777788888888887753 33 677778888888877764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.77  E-value=5.6e-09  Score=90.77  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             Cccce-EeCCCCCCEEEEEcCCCCCCCCCCc-------------CccCCCCCccccCCccCCCCCCCcEEeccCCccCcc
Q 048227           64 DWEGV-KCSATTRRVMQLSLNKTTKFNDSNY-------------NLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL  129 (179)
Q Consensus        64 ~w~Gv-~C~~~~~~v~~l~L~~~~~l~~~~~-------------n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~  129 (179)
                      .|.|+ .|..  .+++.|+|+++. +.+++.             |.+. .+|         ..+++|++|+|++|+|++ 
T Consensus        49 ~~~~l~~C~~--~~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~-~ip---------~~l~~L~~L~Ls~N~l~~-  114 (571)
T 3cvr_A           49 AVSLLKECLI--NQFSELQLNRLN-LSSLPDNLPPQITVLEITQNALI-SLP---------ELPASLEYLDACDNRLST-  114 (571)
T ss_dssp             HHHHHHHHHH--TTCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCS-CCC---------CCCTTCCEEECCSSCCSC-
T ss_pred             hhhhcccccc--CCccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCc-ccc---------cccCCCCEEEccCCCCCC-
Confidence            38999 7864  579999999998 873322             2221 122         235778888888888887 


Q ss_pred             ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          130 YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       130 iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +|.     +..  +|++|+|++|+|++ +|.   .+++|++|+|++|+|+
T Consensus       115 ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          115 LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            764     222  67777777777775 555   4566666666666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.77  E-value=2.1e-08  Score=79.59  Aligned_cols=62  Identities=34%  Similarity=0.450  Sum_probs=48.7

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|++++|++++ ++     .+..+++|++|++++|++++.  +.++.+++|++|++++|+++
T Consensus       108 l~~l~~L~~L~L~~n~i~~-~~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             hccCCCCCEEECCCCcCCC-Ch-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            6677888888888888877 33     677888888888888888864  56788888888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.77  E-value=1.5e-08  Score=77.72  Aligned_cols=66  Identities=14%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             cCCCCCCCc-EEeccCCccCccccCccccccCcccCCCEEeCcCCC-CCCcChhhhCCC-CCCCEEeCCCCcCC
Q 048227          109 LFYPFEELQ-NLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR-FNDSILRYLNTL-TSLTTLILRFNNIE  179 (179)
Q Consensus       109 ~l~~l~~L~-~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l-~~L~~L~Ls~N~lt  179 (179)
                      .|..+++|+ +|++++|+++ .+|.    .....++|++|++++|+ +++..|..|..+ ++|++|++++|+++
T Consensus       150 ~~~~l~~L~~~L~l~~n~l~-~i~~----~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          150 AFQGLCNETLTLKLYNNGFT-SVQG----YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TTTTTBSSEEEEECCSCCCC-EECT----TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             cccchhcceeEEEcCCCCCc-ccCH----hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            467788888 8999999888 5776    43334788899999994 886556778888 89999999988874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.71  E-value=2.1e-09  Score=86.18  Aligned_cols=65  Identities=26%  Similarity=0.377  Sum_probs=42.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCC-CCCC-cChhhhCCCCCCCEEeCCCC-cC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN-RFND-SILRYLNTLTSLTTLILRFN-NI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L~Ls~N-~l  178 (179)
                      +..+++|++|++++|.+++.+|.    .++.+++|++|++++| .+++ .+|..+.++++|++|++++| ++
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             HhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence            45566777777777776666665    6666666777777666 5665 25555666666666666666 54

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.71  E-value=1.5e-10  Score=86.83  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCCCcC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++|++++|++++ +|     .+..+++|++|++++|++++..+ ..+..+++|++|++++|++
T Consensus        93 ~~L~~L~L~~N~l~~-l~-----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CcCCEEECcCCcCCc-CC-----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            445555555555544 33     34555666666666666663221 3566677777777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.71  E-value=3.9e-10  Score=84.58  Aligned_cols=81  Identities=22%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      ..++.++++++. +.        + +|       .+..+++|++|++++|+++. +|.    .+..+++|++|++++|++
T Consensus        48 ~~L~~L~ls~n~-l~--------~-l~-------~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l  105 (198)
T 1ds9_A           48 KACKHLALSTNN-IE--------K-IS-------SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQI  105 (198)
T ss_dssp             TTCSEEECSEEE-ES--------C-CC-------CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEEC
T ss_pred             CCCCEEECCCCC-Cc--------c-cc-------ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcC
Confidence            466777777776 65        3 44       26678889999999999884 787    777788999999999999


Q ss_pred             CCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++ +| .++.+++|++|++++|+++
T Consensus       106 ~~-l~-~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A          106 AS-LS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             CC-HH-HHHHHHHSSEEEESEEECC
T ss_pred             Cc-CC-ccccCCCCCEEECCCCcCC
Confidence            86 56 6888899999999998874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.70  E-value=2.9e-10  Score=90.05  Aligned_cols=62  Identities=32%  Similarity=0.382  Sum_probs=52.5

Q ss_pred             CCCCCcEEeccCCccCc--cccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCC--CCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSGNRFEG--LYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLT--SLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g--~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~Ls~N~lt  179 (179)
                      ++++|+.|+|++|+|++  .+|.    .+..+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence            47899999999999998  5666    778999999999999999975  3344444  9999999999873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.69  E-value=3.1e-08  Score=83.63  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=53.8

Q ss_pred             CCCCCCCcEEeccCCccCccccCcc--cc--ccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKT--YD--SFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~--~~--~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++.+++|+.|++++|.+.|.+|...  ++  .+..+++|++|++++|+|+| +|  ++++++|++|++++|+|+
T Consensus       282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred             ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence            3567889999999999888888511  00  35667899999999999998 44  889999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.69  E-value=5.8e-08  Score=84.87  Aligned_cols=88  Identities=32%  Similarity=0.396  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCCCCCCC--------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCc
Q 048227           75 RRVMQLSLNKTTKFNDS--------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGS  140 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~--------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~  140 (179)
                      ..++.|+|+++. +.++              ..|.+.+        ...+..+++|++|+|++|++++ +|     .+..
T Consensus        65 ~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~--------l~~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~  129 (605)
T 1m9s_A           65 PNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKIKD--------LSSLKDLKKLKSLSLEHNGISD-IN-----GLVH  129 (605)
T ss_dssp             TTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCC--------CTTSTTCTTCCEEECTTSCCCC-CG-----GGGG
T ss_pred             CCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCCCC--------ChhhccCCCCCEEEecCCCCCC-Cc-----cccC
Confidence            467788888777 6632              1222222        1237778889999999999887 44     6888


Q ss_pred             ccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          141 LKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +++|+.|+|++|++++.  +.+..+++|+.|+|++|+|+
T Consensus       130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            89999999999999864  67889999999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.68  E-value=5.7e-08  Score=81.94  Aligned_cols=60  Identities=18%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++++++|++|++++|++++ +|.    .+   .+|++|++++|++++ +| .++++++|++|++++|+++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             cCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence            7788888899998888887 775    33   478888888888886 66 5788888888888887763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.67  E-value=3.2e-08  Score=83.23  Aligned_cols=61  Identities=26%  Similarity=0.335  Sum_probs=49.2

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++. +     .+..+++|++|++++|++++.+|  +..+++|++|++++|++
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV-S-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             hccCccCCEeECCCCccCCc-h-----hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            45677888888888888773 3     67888889999999999988776  78888999999988875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.65  E-value=1.2e-08  Score=83.78  Aligned_cols=65  Identities=28%  Similarity=0.357  Sum_probs=33.6

Q ss_pred             CCCCCCCcEEeccCCccC----ccccCccccccCcccCCCEEeCcCCCCCCc----Chhhh--CCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFE----GLYENKTYDSFGSLKQLKILNLGDNRFNDS----ILRYL--NTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~----g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~l--~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|+|++|.++    +.+|.    .+..+++|++|+|++|++++.    +|..+  +++++|++|+|++|++
T Consensus       212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             hhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            444555666666666654    44454    445555555555555555543    34444  2255555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.63  E-value=3.1e-08  Score=78.33  Aligned_cols=56  Identities=25%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CCCCCCcEEeccCCccCccccCccccccCccc--CCCEEeCcCCCCCCcChh-------hhCCCCCCCEEe
Q 048227          111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLK--QLKILNLGDNRFNDSILR-------YLNTLTSLTTLI  172 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~--~L~~L~Ls~N~l~g~iP~-------~l~~l~~L~~L~  172 (179)
                      ..+++|+.|+|++|+|++.  .    ++..++  +|++|+|++|.+++.+|.       .+..+++|+.||
T Consensus       193 ~~l~~L~~L~Ls~N~i~~~--~----~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          193 QKAPNLKILNLSGNELKSE--R----ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHSTTCCEEECTTSCCCSG--G----GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhCCCCCEEECCCCccCCc--h----hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4567777777777777763  2    333333  777777777777766652       355677777765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.63  E-value=8.9e-08  Score=80.81  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=47.8

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++.+++|++|++++|++++ +      .++.+++|++|++++|++++ +|  ++++++|++|++++|+++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~-~------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN-L------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC-C------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCS
T ss_pred             cccCCCCCEEECcCCCCce-e------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccc
Confidence            5677888888888888877 3      35678888888888888886 55  788888888888888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.62  E-value=1e-07  Score=80.08  Aligned_cols=61  Identities=26%  Similarity=0.337  Sum_probs=46.2

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|++++ +|     .++.+++|++|++++|++++. |+ +.++++|++|++++|++
T Consensus        86 ~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l  146 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTI  146 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEE
T ss_pred             hhccccCCEEECCCCcccc-Ch-----hhcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCcc
Confidence            5677788888888888876 33     367788888888888888854 43 77888888888887765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.61  E-value=1e-08  Score=84.09  Aligned_cols=42  Identities=21%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             CCCCCCcEEeccCCccCc----cccCccccccCcccCCCEEeCcCCCCCC
Q 048227          111 YPFEELQNLDLSGNRFEG----LYENKTYDSFGSLKQLKILNLGDNRFND  156 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g----~iP~~~~~~l~~l~~L~~L~Ls~N~l~g  156 (179)
                      ..+++|++|+|++|++++    .+|.    .+..+++|++|+|++|.+++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLID----FLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHH----HHHHCTTCCEEECCSSCCHH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHH----HHHhCCCCCEEECcCCCCCH
Confidence            445555555555555555    3444    45555555555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.57  E-value=9.7e-09  Score=83.75  Aligned_cols=62  Identities=26%  Similarity=0.353  Sum_probs=41.2

Q ss_pred             CCCcEEeccCCccCccccCccccccC----cc-cCCCEEeCcCCCCCCcChhhhC----C-CCCCCEEeCCCCcCC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFG----SL-KQLKILNLGDNRFNDSILRYLN----T-LTSLTTLILRFNNIE  179 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~----~l-~~L~~L~Ls~N~l~g~iP~~l~----~-l~~L~~L~Ls~N~lt  179 (179)
                      ++|++|+|++|++++..+.    .+.    .+ ++|++|+|++|++++..+..+.    . .++|++|+|++|+++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             CCccEEECcCCcCChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            6777777777777765544    333    33 6778888888887766655443    3 257888888887763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.57  E-value=1.4e-07  Score=82.03  Aligned_cols=55  Identities=20%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +++|++|+|++|++++ +|.       .+++|++|+|++|+|++ +|. +.  ++|++|+|++|+|+
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE-------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CccccEEeCCCCccCc-CCC-------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            4456666666666655 443       34566666666666664 555 44  66666666666653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.56  E-value=1.8e-07  Score=82.06  Aligned_cols=58  Identities=29%  Similarity=0.259  Sum_probs=48.6

Q ss_pred             CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +++|++|+|++|+|+. +|.       .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|+++
T Consensus       240 l~~L~~L~Ls~N~L~~-lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          240 PSELKELMVSGNRLTS-LPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCcCcEEECCCCCCCc-CCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            4667777777777774 553       4578999999999999 88999999999999999999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.55  E-value=2.2e-07  Score=78.34  Aligned_cols=85  Identities=14%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCCCCCCCC------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCccc
Q 048227           75 RRVMQLSLNKTTKFNDS------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLK  142 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~  142 (179)
                      ..++.++++++. ++++            .+|.+.+ +|       .++.+++|++|++++|++++ +|.    ..   +
T Consensus       153 ~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~-l~-------~~~~l~~L~~L~l~~N~l~~-l~~----~~---~  215 (454)
T 1jl5_A          153 SFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEE-LP-------ELQNLPFLTAIYADNNSLKK-LPD----LP---L  215 (454)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSS-CC-------CCTTCTTCCEEECCSSCCSS-CCC----CC---T
T ss_pred             CCCCEEECCCCc-CcccCCCcccccEEECcCCcCCc-Cc-------cccCCCCCCEEECCCCcCCc-CCC----Cc---C
Confidence            457777877777 6532            2333333 22       26777888888888888876 554    22   3


Q ss_pred             CCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          143 QLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       143 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +|++|++++|+++ .+|. ++.+++|++|++++|++
T Consensus       216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence            5666666666666 5553 66666666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.51  E-value=2.1e-08  Score=81.80  Aligned_cols=90  Identities=21%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCC-CCcEEeccCCccCccccCccccccCcc-----cCCCEEe
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFE-ELQNLDLSGNRFEGLYENKTYDSFGSL-----KQLKILN  148 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~-~L~~L~Ls~N~l~g~iP~~~~~~l~~l-----~~L~~L~  148 (179)
                      ..++.|+|+++. +.        +.-+..+  ...+..++ +|++|+|++|++++..+.    .+..+     ++|++|+
T Consensus        22 ~~L~~L~Ls~n~-l~--------~~~~~~l--~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~   86 (362)
T 3goz_A           22 HGVTSLDLSLNN-LY--------SISTVEL--IQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLN   86 (362)
T ss_dssp             TTCCEEECTTSC-GG--------GSCHHHH--HHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEE
T ss_pred             CCceEEEccCCC-CC--------hHHHHHH--HHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEE
Confidence            458899999888 76        2211000  02356677 899999999999987666    66665     8999999


Q ss_pred             CcCCCCCCcChhhhCC----C-CCCCEEeCCCCcCC
Q 048227          149 LGDNRFNDSILRYLNT----L-TSLTTLILRFNNIE  179 (179)
Q Consensus       149 Ls~N~l~g~iP~~l~~----l-~~L~~L~Ls~N~lt  179 (179)
                      |++|++++..+..+..    + ++|++|+|++|+++
T Consensus        87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            9999999888875544    4 89999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.51  E-value=2e-08  Score=88.06  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=61.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCccceEeC------CCCCCEEEEEcCCCCCCCCCCc-------------CccCCCCCccccC
Q 048227           46 ILRSWGGDDEGMSSDCCDDWEGVKCS------ATTRRVMQLSLNKTTKFNDSNY-------------NLFYGGPSASLLN  106 (179)
Q Consensus        46 ~l~~W~~~~~~~s~~~C~~w~Gv~C~------~~~~~v~~l~L~~~~~l~~~~~-------------n~~~g~ip~~~~~  106 (179)
                      ....|...     .+|| .|.|..|.      .....++.|++++++ ++.++.             |.+. .+|     
T Consensus        11 ~w~~W~~~-----~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~-L~~lp~~l~~~L~~L~L~~N~l~-~lp-----   77 (622)
T 3g06_A           11 VWSAWRRA-----APAE-ESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLT-SLP-----   77 (622)
T ss_dssp             HHHHHHHT-----CCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSC-CSCCCSCCCTTCSEEEECSCCCS-CCC-----
T ss_pred             HHHHHHhc-----CCcc-hhccccccCcccccccCCCCcEEEecCCC-cCccChhhCCCCcEEEecCCCCC-CCC-----
Confidence            34567663     5788 89764321      112357889999888 763321             1111 111     


Q ss_pred             CccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          107 MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       107 ~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                          ..+++|++|+|++|++++ +|.       .+++|++|++++|++++ +|.   .+++|++|++++|++
T Consensus        78 ----~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l  133 (622)
T 3g06_A           78 ----ALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQL  133 (622)
T ss_dssp             ----CCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCC
T ss_pred             ----CcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCC
Confidence                135678888888888775 663       45777788888887774 444   344555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.43  E-value=2.5e-08  Score=83.09  Aligned_cols=66  Identities=27%  Similarity=0.214  Sum_probs=54.3

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCc-----ccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGS-----LKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~-----l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|++++|++++..+.    .+..     .++|++|++++|++++    .+|..+..+++|++|++++|+++
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVR----ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HhhCCCccEEEccCCccccccHH----HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            44568899999999998875544    3432     6799999999999997    88999999999999999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.28  E-value=1.1e-06  Score=71.34  Aligned_cols=85  Identities=15%  Similarity=0.239  Sum_probs=64.5

Q ss_pred             eEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEE
Q 048227           68 VKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKIL  147 (179)
Q Consensus        68 v~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L  147 (179)
                      .+|..   +  .++.++++ ++         .||..      +  .+++++|+|++|+|+. ||+.   .|.++++|++|
T Consensus         7 C~C~~---~--~v~C~~~~-Lt---------~iP~~------l--~~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L   59 (350)
T 4ay9_X            7 CHCSN---R--VFLCQESK-VT---------EIPSD------L--PRNAIELRFVLTKLRV-IQKG---AFSGFGDLEKI   59 (350)
T ss_dssp             SEEET---T--EEEEESTT-CC---------SCCTT------C--CTTCSEEEEESCCCSE-ECTT---SSTTCTTCCEE
T ss_pred             cEeeC---C--EEEecCCC-CC---------ccCcC------c--CCCCCEEEccCCcCCC-cCHH---HHcCCCCCCEE
Confidence            46753   2  46778888 76         55643      2  2579999999999997 6542   68999999999


Q ss_pred             eCcCCCCCCcChh-hhCCCCCCCE-EeCCCCcCC
Q 048227          148 NLGDNRFNDSILR-YLNTLTSLTT-LILRFNNIE  179 (179)
Q Consensus       148 ~Ls~N~l~g~iP~-~l~~l~~L~~-L~Ls~N~lt  179 (179)
                      +|++|++.+.+|. .|.++++|++ +.+..|+++
T Consensus        60 ~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             EEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             ECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            9999999888875 5788988875 566667763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.22  E-value=3.2e-07  Score=75.59  Aligned_cols=65  Identities=23%  Similarity=0.233  Sum_probs=42.8

Q ss_pred             CCCCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227          111 YPFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..+++|++|+|++|.++..    ++.    .+...++|++|+|++|.++.    .++..+...++|++|+|++|.|+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~----~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAA----QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHH----HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHH----HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3456677777777776642    233    45566778888888887764    24445556677888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.19  E-value=1.3e-07  Score=78.77  Aligned_cols=60  Identities=22%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             CCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCCcChhhhCC-----CCCCCEEeCCCCcC
Q 048227          115 ELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT-----LTSLTTLILRFNNI  178 (179)
Q Consensus       115 ~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~-----l~~L~~L~Ls~N~l  178 (179)
                      +|++|++++|.+++.    +|.    .+..+++|++|++++|++++..+..+..     .++|++|++++|++
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSS----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             cceeeEcCCCCCchHHHHHHHH----HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            455555555554433    233    3444556666666666665444433332     45666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.15  E-value=8.2e-07  Score=73.10  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=49.8

Q ss_pred             CCCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..+.|++|+|++|.++..    ++.    .+..+++|++|||++|+++.    .++..+...++|++|+|++|+|+
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~----~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLME----GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHH----HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             cCCccceeeCCCCCCChHHHHHHHH----HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            457899999999988652    333    45678889999999999875    34567778889999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.98  E-value=1.3e-05  Score=64.28  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC-EEeCcCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK-ILNLGDNR  153 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~-~L~Ls~N~  153 (179)
                      ..++.++|+++. ++.+...              .|.++++|+.|+|++| ++. |+..   .|.++++|+ .+++.+ +
T Consensus       226 ~~L~~l~L~~n~-i~~I~~~--------------aF~~~~~L~~l~l~~n-i~~-I~~~---aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          226 PNLVSLDISKTN-ATTIPDF--------------TFAQKKYLLKIKLPHN-LKT-IGQR---VFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             TTCCEEECTTBC-CCEECTT--------------TTTTCTTCCEEECCTT-CCE-ECTT---TTTTCTTCCEEEEECT-T
T ss_pred             CCCeEEECCCCC-cceecHh--------------hhhCCCCCCEEECCcc-cce-ehHH---HhhCChhccEEEEEcc-c
Confidence            368889999887 7633333              3445555555555554 333 3321   445555555 555554 4


Q ss_pred             CCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          154 FNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       154 l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++..-+..|.++++|+.++++.|++
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCcc
Confidence            4422334455555555555544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.88  E-value=3e-06  Score=72.58  Aligned_cols=63  Identities=14%  Similarity=0.015  Sum_probs=48.0

Q ss_pred             CCCCcEEeccCCccCc-cccCccccccCcccCCCEEeCcCCCCCCc-ChhhhCCCCCCCEEeCCCCcCC
Q 048227          113 FEELQNLDLSGNRFEG-LYENKTYDSFGSLKQLKILNLGDNRFNDS-ILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g-~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +++|++|++++|++++ .++.    .+..+++|++|++++|.|++. ++..+..+++|++|+|++|+++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLME----FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHH----HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCCCCHHHHHH----HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            6778888888888876 3444    557788888999998888755 4445567888999999888865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.70  E-value=8.2e-05  Score=52.18  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             CCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227          115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN  155 (179)
Q Consensus       115 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~  155 (179)
                      +|++|+|++|+|+. +|..   .|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTA-LPPG---LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSS-CCTT---TGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCc-cChh---hhhhccccCEEEecCCCee
Confidence            46777777777766 3331   4566667777777777653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.68  E-value=2.3e-05  Score=58.03  Aligned_cols=61  Identities=20%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             CCCcEEeccCCccCcc----ccCccccccCcccCCCEEeC--cCCCCCCc----ChhhhCCCCCCCEEeCCCCcC
Q 048227          114 EELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNL--GDNRFNDS----ILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~L--s~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +.|++|+|++|.++..    +..    .+...+.|++|+|  ++|.++..    +...+...++|++|+|++|++
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVE----ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHH----GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHH----HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            4556666666665532    122    3444555666666  55666533    233344445666666666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.61  E-value=3.2e-05  Score=57.27  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCC-CCCCCCCcCccCCCCCcccc-CCccCCCCCCCcEEeccCCccCcc----ccCccccccCcccCCCE
Q 048227           73 TTRRVMQLSLNKT-TKFNDSNYNLFYGGPSASLL-NMSLFYPFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKI  146 (179)
Q Consensus        73 ~~~~v~~l~L~~~-~~l~~~~~n~~~g~ip~~~~-~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~  146 (179)
                      ....++.|+|+++ . +.+           .+.. -...+...+.|++|+|++|++...    +..    .+...+.|++
T Consensus        34 ~~~~L~~L~L~~n~~-i~~-----------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~----~L~~n~~L~~   97 (185)
T 1io0_A           34 NDPDLEEVNLNNIMN-IPV-----------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE----MLKVNNTLKS   97 (185)
T ss_dssp             TCTTCCEEECTTCTT-CCH-----------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH----HHHHCSSCCE
T ss_pred             cCCCCCEEEecCCCC-CCH-----------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH----HHHhCCCcCE
Confidence            3568999999998 7 651           1100 012245678999999999998742    222    4556688999


Q ss_pred             EeCcCCCCCCc----ChhhhCCCCCCCEEeC--CCCcCC
Q 048227          147 LNLGDNRFNDS----ILRYLNTLTSLTTLIL--RFNNIE  179 (179)
Q Consensus       147 L~Ls~N~l~g~----iP~~l~~l~~L~~L~L--s~N~lt  179 (179)
                      |+|++|.++..    +...+...++|++|+|  ++|.++
T Consensus        98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            99999999864    5677788899999999  889874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.57  E-value=1.4e-05  Score=65.56  Aligned_cols=67  Identities=15%  Similarity=0.306  Sum_probs=48.3

Q ss_pred             CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .+++|++|+|.+|.+....+.. +.....+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4678888888888877544330 00224578999999999999864    4455556789999999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.56  E-value=2.2e-05  Score=67.22  Aligned_cols=63  Identities=14%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             CCCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCC----CcChhhhCCCCCCCEEeCCCCcC
Q 048227          112 PFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFN----DSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~----g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      .+++|++|+|++|.+++.    ++.    .+..+++|++|++++|.++    +.++..+.++++|++|++++|.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            578888888888887664    433    4456788888888888887    34555666788888888887754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=0.00024  Score=56.75  Aligned_cols=58  Identities=24%  Similarity=0.231  Sum_probs=48.4

Q ss_pred             CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCC-EEeCCC
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT-TLILRF  175 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-~L~Ls~  175 (179)
                      +++|+.|+|++|+++. ||..   .|..+++|+.++|++| ++..-+..|.++++|+ .+++.+
T Consensus       225 ~~~L~~l~L~~n~i~~-I~~~---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT-IPDF---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCE-ECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcce-ecHh---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence            6899999999999886 5553   7889999999999998 7744456789999999 999876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.43  E-value=6.8e-05  Score=55.53  Aligned_cols=84  Identities=11%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCc-cCccccCccccccCcc----cCCCEEeC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNR-FEGLYENKTYDSFGSL----KQLKILNL  149 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~-l~g~iP~~~~~~l~~l----~~L~~L~L  149 (179)
                      .++++||+++.. +++.              ....+..+++|++|+|+++. ++..    ++..++.+    ++|++|+|
T Consensus        61 ~~L~~LDLs~~~-Itd~--------------GL~~L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~L  121 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSI--------------GFDHMEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEI  121 (176)
T ss_dssp             CCEEEEEEESCC-CCGG--------------GGGGGTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEE
T ss_pred             ceEeEEeCcCCC-ccHH--------------HHHHhcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEc
Confidence            479999999988 7621              11235779999999999985 6642    22255554    47999999


Q ss_pred             cCC-CCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          150 GDN-RFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       150 s~N-~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      +++ +++..--..+.++++|++|+|++..
T Consensus       122 s~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          122 ISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             ESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            997 4876555677889999999998763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.42  E-value=2.6e-05  Score=66.67  Aligned_cols=62  Identities=16%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             CCCCcEEeccCCccCccccCcccccc-CcccCCCEEeCcCCCCCCcChh-hhCCCCCCCEEeCCCCcC
Q 048227          113 FEELQNLDLSGNRFEGLYENKTYDSF-GSLKQLKILNLGDNRFNDSILR-YLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~iP~~~~~~l-~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~Ls~N~l  178 (179)
                      +++|++|+|++|.+++..+.    .+ ..+++|++|++++|.+++..+. .+..+++|++|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~----~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMH----HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHH----HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHH----HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            66788888888887664443    44 5678888888888888655444 334578888888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.25  E-value=5.8e-05  Score=64.50  Aligned_cols=63  Identities=21%  Similarity=0.219  Sum_probs=42.1

Q ss_pred             CCCCCcEEeccCCccCccccCccccccCc-ccCCCEEeCcCCCCCCcChhhh-CCCCCCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSGNRFEGLYENKTYDSFGS-LKQLKILNLGDNRFNDSILRYL-NTLTSLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~-l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~Ls~N~lt  179 (179)
                      .+++|++|++++ .+++..+.    .+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|+++
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~----~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFE----YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHH----HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             hCCCccEEeecC-cccHHHHH----HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            345566666644 44443333    4444 7788888888888877666555 66888888888888763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.52  E-value=0.0026  Score=44.40  Aligned_cols=55  Identities=20%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             EEeccCCccC-ccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          118 NLDLSGNRFE-GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       118 ~L~Ls~N~l~-g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      .++.+++.++ ..+|.    .+  .++|++|+|++|+|+..-+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666665 23665    33  24689999999999955556678899999999999976

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.29  E-value=0.0018  Score=47.81  Aligned_cols=62  Identities=16%  Similarity=0.253  Sum_probs=47.9

Q ss_pred             CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC-CCCcChhhhCCC----CCCCEEeCCCCc-CC
Q 048227          114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR-FNDSILRYLNTL----TSLTTLILRFNN-IE  179 (179)
Q Consensus       114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~Ls~N~-lt  179 (179)
                      .+|++||++++.++.    .++..+..+++|++|+|+++. ++..--..+..+    ++|++|+|+++. +|
T Consensus        61 ~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            469999999998764    333378899999999999985 776544566665    479999999874 54

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.08  E-value=0.016  Score=47.78  Aligned_cols=64  Identities=8%  Similarity=0.105  Sum_probs=33.4

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ..|..|++|+.++|. +.++- |+..   .|.++++|+.++|..| ++-.-+..|.++ +|+.+++.+|.+
T Consensus       294 ~aF~~c~~L~~l~l~-~~i~~-I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          294 YCLEGCPKLARFEIP-ESIRI-LGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TTTTTCTTCCEECCC-TTCCE-ECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             HHhhCCccCCeEEeC-CceEE-Ehhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            345556666666665 23433 3321   4555666666666443 442333455566 666666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.93  E-value=0.025  Score=46.61  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=46.6

Q ss_pred             CccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          107 MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       107 ~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      ...|.+|++|+.++++.|+++. ||..   .|. ..+|+.+.+..+ ++-.-...|.++++|+.+++..|
T Consensus       173 ~~aF~~c~~L~~l~l~~n~l~~-I~~~---aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTKITK-LPAS---TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSCCSE-ECTT---TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred             HHHhhCcccCCeeecCCCcceE-echh---hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence            4568889999999999998886 6652   333 578888888744 66344456778888888888654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.54  E-value=0.0079  Score=49.11  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             CCCCCcEEeccC--CccCccccCcccc-cc--CcccCCCEEeCcCCCCCCcChhhhC---CCCCCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSG--NRFEGLYENKTYD-SF--GSLKQLKILNLGDNRFNDSILRYLN---TLTSLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~--N~l~g~iP~~~~~-~l--~~l~~L~~L~Ls~N~l~g~iP~~l~---~l~~L~~L~Ls~N~lt  179 (179)
                      .+++|++|+|+.  |...|........ .+  ..+++|++|+|.+|.+....+..+.   .+++|++|+|+.|+++
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            578899988853  2322210000000 12  3578999999999998865555443   5789999999999874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.47  E-value=0.0092  Score=44.76  Aligned_cols=91  Identities=10%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCC-CCCCCCCcCccCCCCCccc-cCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcC
Q 048227           74 TRRVMQLSLNKT-TKFNDSNYNLFYGGPSASL-LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD  151 (179)
Q Consensus        74 ~~~v~~l~L~~~-~~l~~~~~n~~~g~ip~~~-~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~  151 (179)
                      ...++.|+|+++ . +.+           .+. .-...+..-+.|+.|+|++|++...--..-.+.+..-+.|++|+|+.
T Consensus        40 n~~L~~L~L~~nn~-igd-----------~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           40 DTDLKEVNINNMKR-VSK-----------ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             CSSCCEEECTTCCS-SCH-----------HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             CCCccEEECCCCCC-CCH-----------HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence            468899999875 5 540           000 00112344578999999999987422110000344557899999999


Q ss_pred             CCCCCc----ChhhhCCCCCCCEEeCCCC
Q 048227          152 NRFNDS----ILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       152 N~l~g~----iP~~l~~l~~L~~L~Ls~N  176 (179)
                      |+|...    +-+.+..-+.|++|+|++|
T Consensus       108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          108 NFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            999853    3345566677999999865

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.49  E-value=0.029  Score=42.00  Aligned_cols=93  Identities=15%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCC-
Q 048227           74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN-  152 (179)
Q Consensus        74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N-  152 (179)
                      ...++.|+|+++. +.+-      |...   + ...+..-+.|++|+|+.|+|+..--..-.+.+..-+.|++|+|++| 
T Consensus        69 N~~L~~L~L~~n~-igd~------ga~a---l-A~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A           69 SKHIEKFSLANTA-ISDS------EARG---L-IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             CSCCCEEECTTSC-CBHH------HHTT---H-HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCCcCEEEccCCC-CChH------HHHH---H-HHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence            4789999999998 7511      0000   0 0112233679999999999874211100113555577999999865 


Q ss_pred             --CCCC----cChhhhCCCCCCCEEeCCCCc
Q 048227          153 --RFND----SILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       153 --~l~g----~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                        .+..    .|-+.+..-+.|+.|+++.|.
T Consensus       138 ~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          138 QSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             SCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence              3332    244555666789999998775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.47  E-value=0.1  Score=42.34  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=38.4

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      .|.++++|+.++|..+ ++- |+..   .|.++++|+.+++..| ++-.-...|.++++|+.+++..+
T Consensus       315 aF~~c~~L~~i~lp~~-v~~-I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VEE-IGKR---SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCE-ECTT---TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hhcCCCCCCEEEeCCc-ccE-EhHH---hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            4566677777777543 443 3321   5677777777777665 55223356777778887777543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.45  E-value=0.21  Score=40.48  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      ..|.++.+|+.++|..+ ++. |...   .|.++.+|+.+.+..+ ++-.-...|.++++|+.+++.+|.
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~-I~~~---aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQ-ILDD---AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCE-ECTT---TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             eeecCCCCcCEEEeCCc-ccE-ehHh---HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            34666777777777643 333 3321   5777788888888654 552223567888888888887653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.40  E-value=0.14  Score=41.09  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=42.4

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCCC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRFN  176 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N  176 (179)
                      ..|..+++|+.+++.++.++. |+..   .|.++.+|+.++|..+ ++ .|+ ..|.++++|+.+.+..+
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~-I~~~---aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIET-LEPR---VFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCE-ECTT---TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccccccce-ehhh---hhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence            346677788888887777765 4332   6777788888888654 55 343 46777888887777543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.22  E-value=0.75  Score=36.75  Aligned_cols=63  Identities=11%  Similarity=0.113  Sum_probs=43.4

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      .|.++..|+.+.+..+ +.. ++..   .|..+++|+.+.+..+.++-.-...|.++++|+.+.|..+
T Consensus       258 aF~~~~~l~~i~l~~~-i~~-i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKT-VPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSE-ECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccceeehhcccccccc-cee-cccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            3455566666666433 332 3321   5778899999999988888444567889999999998654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.06  E-value=1.3  Score=35.77  Aligned_cols=63  Identities=14%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      ..|.+++.|+.+.+. +.++. |+..   .|.++.+|+.+++..+ ++-.-...|.++++|+.+.+..+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~-I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITE-LPES---VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCE-ECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             cccccccccccccCC-Ccccc-cCce---eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            456778888888885 34443 5442   6788899999999865 55333457888999999988644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.05  E-value=1  Score=36.34  Aligned_cols=62  Identities=19%  Similarity=0.223  Sum_probs=44.3

Q ss_pred             cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      .|..+.+|+.+.+..+ ++. |+..   .|.++++|+.+++..+ ++-.-...|.++++|+.+.+..|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~-I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKF-IGEE---AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCE-ECTT---TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccc-cce-echh---hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            3566778888887654 443 4432   6788899999999754 66333467889999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 15/68 (22%)

Query: 19 CLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDD-WEGVKCSATTR-- 75
          C   ++ ALL++K           +   L SW       ++DCC+  W GV C   T+  
Sbjct: 3  CNPQDKQALLQIKKDLG-------NPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTY 50

Query: 76 RVMQLSLN 83
          RV  L L+
Sbjct: 51 RVNNLDLS 58

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 5/58 (8%)

Query: 120 DLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177
           DL  NR  G            LK L  LN+  N     I +    L          N 
Sbjct: 250 DLRNNRIYGTLP----QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 11/113 (9%)

Query: 42  YDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPS 101
            D       G       SD       +  ++    + ++ L+K     D   N  YG   
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 102 ASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154
             L  +        L +L++S N   G          G+L++  +    +N+ 
Sbjct: 262 QGLTQLK------FLHSLNVSFNNLCG-----EIPQGGNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169
                +LQ L  + N+   +       S  +L  +  L+ G N+ +D     L  LT +T
Sbjct: 325 VSSLTKLQRLFFANNKVSDV------SSLANLTNINWLSAGHNQISDLT--PLANLTRIT 376

Query: 170 TLILRFN 176
            L L   
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 106 NMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTL 165
           ++S     + L  L L  N    +          SL +L+ L   +N+   S +  L  L
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFANNKV--SDVSSLANL 350

Query: 166 TSLTTLILRFNNIE 179
           T++  L    N I 
Sbjct: 351 TNINWLSAGHNQIS 364

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175
              LDL  N+   + +      F +LK L  L L +N+ +         L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 176 NNIE 179
           N ++
Sbjct: 89  NQLK 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTT 170
           ++Q+LD+         + +  +    L+Q +++ L D    +     I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 171 LILRFNNI 178
           L LR N +
Sbjct: 60  LNLRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL-----NT 164
             P   L+ L L+         +    +  +   L+ L+L +N   D+ +  L       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 165 LTSLTTLILRFNNI 178
              L  L+L     
Sbjct: 425 GCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (78), Expect = 0.004
 Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 5/76 (6%)

Query: 107 MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL---- 162
             L    ++ Q + L               +      L  LNL  N   D  +  +    
Sbjct: 20  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 163 -NTLTSLTTLILRFNN 177
                 +  L L+   
Sbjct: 80  QTPSCKIQKLSLQNCC 95

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 12/77 (15%)

Query: 103 SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL 162
           S    SL      L+ L++S N+   L             +L+ L    N   +      
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL--------PALPPRLERLIASFNHLAEVP---- 320

Query: 163 NTLTSLTTLILRFNNIE 179
               +L  L + +N + 
Sbjct: 321 ELPQNLKQLHVEYNPLR 337

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.27
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.25
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.11
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.06
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.01
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.5
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.06

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=2.5e-26  Score=183.00  Aligned_cols=129  Identities=28%  Similarity=0.476  Sum_probs=92.1

Q ss_pred             CChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCC-CccceEeCCCC--CCEEEEEcCCCCCCCCCCcC
Q 048227           18 ACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCD-DWEGVKCSATT--RRVMQLSLNKTTKFNDSNYN   94 (179)
Q Consensus        18 ~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~-~w~Gv~C~~~~--~~v~~l~L~~~~~l~~~~~n   94 (179)
                      -|.++|++||++||+++.     +|.  .+++|...     +|||. .|.||+|+...  +||++|+|++++ +.     
T Consensus         2 ~c~~~e~~aLl~~k~~~~-----~~~--~l~sW~~~-----~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~-l~-----   63 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG-----NPT--TLSSWLPT-----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LP-----   63 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-----CCG--GGTTCCTT-----SCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CS-----
T ss_pred             CCCHHHHHHHHHHHHHCC-----CCC--cCCCCCCC-----CCCCCCcCCCeEEeCCCCcEEEEEEECCCCC-CC-----
Confidence            489999999999999997     765  68999863     69993 39999998643  489999999998 76     


Q ss_pred             ccCC--CCCccccCCccCCCCCCCcEEeccC-CccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEE
Q 048227           95 LFYG--GPSASLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTL  171 (179)
Q Consensus        95 ~~~g--~ip~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  171 (179)
                         |  .+|.+      +++|++|++|+|++ |+++|.+|+    +++++++|++|+|++|++.+..|..+..+.+|+++
T Consensus        64 ---g~~~lp~~------l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          64 ---KPYPIPSS------LANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             ---SCEECCGG------GGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             ---CCCCCChH------HhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhccc
Confidence               4  23433      56666666666664 666666666    66666666666666666666555555555555555


Q ss_pred             eCCCCc
Q 048227          172 ILRFNN  177 (179)
Q Consensus       172 ~Ls~N~  177 (179)
                      ++++|+
T Consensus       131 ~l~~N~  136 (313)
T d1ogqa_         131 DFSYNA  136 (313)
T ss_dssp             ECCSSE
T ss_pred             cccccc
Confidence            555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=2.7e-14  Score=105.62  Aligned_cols=111  Identities=29%  Similarity=0.363  Sum_probs=74.2

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCC-CCcCccCCCCCcc----------ccCCccCCCCCCCcEEec
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFND-SNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDL  121 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~-~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~L  121 (179)
                      | .|..|.|+..         ...++.|+|+++. ++. +....|.+-....          .+....+..+++|++|+|
T Consensus         8 C-~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             E-cCCEEEEeCCCcCccCCCCCCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            6 7888999742         1367889999998 762 2111111110000          111234667778888888


Q ss_pred             cCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          122 SGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       122 s~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++|++++..|.    .|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+
T Consensus        86 s~N~l~~l~~~----~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          86 GENKIKEISNK----MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSCCCCEECSS----SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccccCHH----HHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            88888875555    677888888888888888876667777888888888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.1e-12  Score=90.59  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=74.7

Q ss_pred             CccceEeCCC-----------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227           64 DWEGVKCSAT-----------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN  132 (179)
Q Consensus        64 ~w~Gv~C~~~-----------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~  132 (179)
                      .+.+|+|...           ..++++|++.+++.++              .+....|.++++|+.|+|++|+++...|.
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~--------------~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ--------------HLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC--------------EECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCcccc--------------ccCchhhccccccCcceeeccccCCcccc
Confidence            6888999741           1356777776543143              23334588899999999999999985566


Q ss_pred             ccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          133 KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       133 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                          .|..+++|++|+|++|+|+ .+|.......+|++|+|++|.|.
T Consensus        75 ----~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          75 ----AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ----GGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ----cccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence                7899999999999999999 67766555668999999999873

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=3.9e-12  Score=93.73  Aligned_cols=81  Identities=28%  Similarity=0.329  Sum_probs=62.0

Q ss_pred             CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCC
Q 048227           90 DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT  169 (179)
Q Consensus        90 ~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  169 (179)
                      ++++|.+++.++.     ..|..+++|++|+|++|++.+..+.    .+..+++|++|+|++|+++...|..|.++++|+
T Consensus        35 ~Ls~N~i~~~~~~-----~~f~~l~~L~~L~L~~N~i~~~~~~----~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          35 LLNDNELGRISSD-----GLFGRLPHLVKLELKRNQLTGIEPN----AFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             ECCSCCCCSBCCS-----CSGGGCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             EeCCCCCcccccc-----cccCCCceEeeeecccccccccccc----ccccccccceeeeccccccccCHHHHhCCCccc
Confidence            4566777654433     2367788888888888888887666    778888888888888888876667788888888


Q ss_pred             EEeCCCCcCC
Q 048227          170 TLILRFNNIE  179 (179)
Q Consensus       170 ~L~Ls~N~lt  179 (179)
                      +|+|++|+|+
T Consensus       106 ~L~L~~N~l~  115 (192)
T d1w8aa_         106 TLNLYDNQIS  115 (192)
T ss_dssp             EEECCSSCCC
T ss_pred             ccccCCcccc
Confidence            8888888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=6.3e-12  Score=86.77  Aligned_cols=83  Identities=24%  Similarity=0.290  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      ..++.++++++. ++         .+|..      ++.+++|++|++++|+++. +|     .+..+++|++|++++|++
T Consensus        20 ~~L~~L~ls~N~-l~---------~lp~~------~~~l~~L~~L~l~~N~i~~-l~-----~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          20 LLVTHLDLSHNR-LR---------ALPPA------LAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             TTCCEEECCSSC-CC---------CCCGG------GGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCC
T ss_pred             CCCCEEECCCCc-cC---------cchhh------hhhhhcccccccccccccc-cC-----ccccccccCeEECCCCcc
Confidence            456777777776 65         34433      6778889999999999987 55     578889999999999999


Q ss_pred             CCcC-hhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDSI-LRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~i-P~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +... +..++.+++|++|++++|+++
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            8432 256788899999999998863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=7.8e-12  Score=86.29  Aligned_cols=77  Identities=23%  Similarity=0.335  Sum_probs=65.3

Q ss_pred             EEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcC
Q 048227           79 QLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSI  158 (179)
Q Consensus        79 ~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~i  158 (179)
                      .++|++++ ++         .++       .+..+++|++|++++|+++. +|+    .++.+++|+.|++++|+++. +
T Consensus         2 ~L~Ls~n~-l~---------~l~-------~l~~l~~L~~L~ls~N~l~~-lp~----~~~~l~~L~~L~l~~N~i~~-l   58 (124)
T d1dcea3           2 VLHLAHKD-LT---------VLC-------HLEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-V   58 (124)
T ss_dssp             EEECTTSC-CS---------SCC-------CGGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-C
T ss_pred             EEEcCCCC-CC---------CCc-------ccccCCCCCEEECCCCccCc-chh----hhhhhhcccccccccccccc-c
Confidence            46778887 66         222       26778999999999999986 888    89999999999999999994 5


Q ss_pred             hhhhCCCCCCCEEeCCCCcCC
Q 048227          159 LRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       159 P~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      | .+.++++|++|++++|+++
T Consensus        59 ~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3          59 D-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             G-GGTTCSSCCEEECCSSCCC
T ss_pred             C-ccccccccCeEECCCCccC
Confidence            6 4899999999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.25  E-value=7.2e-13  Score=104.17  Aligned_cols=63  Identities=25%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      ++.+++|++|+|++|+|+|.+|.    .++++++|++|||++|+|+|.+|+ ++++++|+.+++++|+
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~----~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccccccccCccCeecccCCh----HHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            66788999999999999999998    899999999999999999999985 6888999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.8e-11  Score=84.75  Aligned_cols=64  Identities=28%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh--hhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|++++|+++...+.    .+..+++|++|++++|+++. ++  ..+..+++|++|++++|.+
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l~~~----~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cccCcchhhhhcccccccCCCcc----ccccccccccceeccccccc-cccccccccccccchhhcCCCcc
Confidence            66778888888888888773333    35678888888888888873 44  3577788888888888875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.8e-11  Score=90.64  Aligned_cols=99  Identities=22%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL  144 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L  144 (179)
                      ..+..++++++. ++.+....|.+.--.          ..+.+..|.++++|+++++++|++++..|.    .|..+++|
T Consensus       129 ~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~----~f~~l~~L  203 (284)
T d1ozna_         129 AALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRL  203 (284)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTC
T ss_pred             cccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChh----Hhhhhhhc
Confidence            346778888877 764443333211100          112234578889999999999999987787    89999999


Q ss_pred             CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++||+++|++++..|..|+++++|++|++++|.+
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccccccccccccccccccccccCEEEecCCCC
Confidence            9999999999988888999999999999999976

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.9e-10  Score=87.31  Aligned_cols=67  Identities=24%  Similarity=0.248  Sum_probs=60.5

Q ss_pred             ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..+..+++|+++++++|++++..|.    .+..+++|++|||++|+|+ .+|+.+..+++|++|+|++|.+.
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccchhcccccccccccCcc----ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            3467789999999999999996666    7899999999999999999 89999999999999999999763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.8e-10  Score=86.67  Aligned_cols=94  Identities=28%  Similarity=0.329  Sum_probs=75.1

Q ss_pred             CCEEEEEcCCCCCCCCC----------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcccccc
Q 048227           75 RRVMQLSLNKTTKFNDS----------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSF  138 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~----------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l  138 (179)
                      .+++.++++.+. +..+                ..|.+.+ +|     ...|..+++|++|++++|++++..|.    .+
T Consensus       105 ~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~-i~-----~~~f~~~~~L~~L~l~~N~l~~l~~~----~f  173 (284)
T d1ozna_         105 GRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA-LP-----DDTFRDLGNLTHLFLHGNRISSVPER----AF  173 (284)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-CC-----TTTTTTCTTCCEEECCSSCCCEECTT----TT
T ss_pred             ccCCEEecCCcc-cccccccccchhcccchhhhccccccc-cC-----hhHhccccchhhcccccCcccccchh----hh
Confidence            357778888776 5422                2333332 22     23477889999999999999986666    88


Q ss_pred             CcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          139 GSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       139 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ..+++|+++++++|++++..|..|.++++|++|++++|+++
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            99999999999999999999999999999999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.5e-10  Score=79.68  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             EEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCC-ccCccccCccccccCcccCCCEEeCcCCCCCCc
Q 048227           79 QLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGN-RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS  157 (179)
Q Consensus        79 ~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N-~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~  157 (179)
                      .++..+++ +.         .+|..      +..+++|++|++++| .++..-+.    .|.++++|+.|+|++|+|+..
T Consensus        12 ~l~c~~~~-~~---------~~p~~------l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i   71 (156)
T d2ifga3          12 GLRCTRDG-AL---------DSLHH------LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFV   71 (156)
T ss_dssp             CEECCSSC-CC---------TTTTT------SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEE
T ss_pred             eEEecCCC-Cc---------cCccc------ccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCc
Confidence            47777777 54         23332      667889999999876 48874445    789999999999999999977


Q ss_pred             ChhhhCCCCCCCEEeCCCCcCC
Q 048227          158 ILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       158 iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .|..|..+++|++|+|++|+|+
T Consensus        72 ~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          72 APDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             CTTGGGSCSCCCEEECCSSCCS
T ss_pred             ccccccccccccceeccCCCCc
Confidence            7888999999999999999985

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.01  E-value=3.5e-10  Score=88.08  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=41.6

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      |.+++.+++|++++|.+++..|.    .+..+++|++|+|++|+|+ .+|+.+.++++|++|+|++|+|+
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~----~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             hhccccccccccccccccccccc----cccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            55566666666666666664454    5666666666666666666 45666666666666666666653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.1e-10  Score=81.48  Aligned_cols=83  Identities=25%  Similarity=0.276  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      .++.+|+|++++ ++         .||.      .+..+++|++|+|++|+++. ++     .+..+++|++|++++|++
T Consensus        18 ~~lr~L~L~~n~-I~---------~i~~------~~~~l~~L~~L~Ls~N~i~~-l~-----~~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          18 VRDRELDLRGYK-IP---------VIEN------LGATLDQFDAIDFSDNEIRK-LD-----GFPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             TSCEEEECTTSC-CC---------SCCC------GGGGTTCCSEEECCSSCCCE-EC-----CCCCCSSCCEEECCSSCC
T ss_pred             CcCcEEECCCCC-CC---------ccCc------cccccccCCEEECCCCCCCc-cC-----CcccCcchhhhhcccccc
Confidence            357889999998 86         3332      24567889999999999985 54     678899999999999999


Q ss_pred             CCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +...+..+..+++|++|++++|+++
T Consensus        76 ~~l~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          76 CRIGEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             CEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             cCCCccccccccccccceecccccc
Confidence            8544455677999999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.9e-09  Score=81.58  Aligned_cols=66  Identities=30%  Similarity=0.391  Sum_probs=56.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+.++++|++++|.++...+.    .+..+++|+.+++++|++++..|..|..+++|++|+|++|+|+
T Consensus       120 ~~~l~~l~~L~l~~n~l~~l~~~----~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         120 LRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccceeccc----cccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            45677788888888888874444    6778999999999999999888888999999999999999985

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=2.1e-09  Score=83.45  Aligned_cols=94  Identities=22%  Similarity=0.341  Sum_probs=61.9

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN  132 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~  132 (179)
                      | .|.+|.|...         ...++.|+|+++. ++         .+|+     ..|.++++|++|++++|.+....|.
T Consensus        10 c-~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~-i~---------~l~~-----~~f~~l~~L~~L~l~~n~~~~i~~~   73 (305)
T d1xkua_          10 C-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-IT---------EIKD-----GDFKNLKNLHTLILINNKISKISPG   73 (305)
T ss_dssp             E-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CC---------CBCT-----TTTTTCTTCCEEECCSSCCCCBCTT
T ss_pred             e-cCCEEEecCCCCCccCCCCCCCCCEEECcCCc-CC---------CcCh-----hHhhccccccccccccccccccchh
Confidence            6 7888888641         1346667777766 65         2222     2366677777777777777765555


Q ss_pred             ccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          133 KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       133 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                          .|..+++|++|++++|+++ .+|..+  ...++.|++.+|.+
T Consensus        74 ----~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l  112 (305)
T d1xkua_          74 ----AFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEI  112 (305)
T ss_dssp             ----TTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCC
T ss_pred             ----hhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccch
Confidence                6777777777777777777 466543  34677777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.90  E-value=1.2e-09  Score=86.66  Aligned_cols=59  Identities=27%  Similarity=0.359  Sum_probs=52.4

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      +..+++|++|++++|++++ +|     .++.+++|++|++++|++++.+|  +.++++|++|+|++|
T Consensus       325 l~~l~~L~~L~L~~n~l~~-l~-----~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSD-VS-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-----GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cccCCCCCEEECCCCCCCC-Ch-----hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            6678999999999999987 54     68899999999999999997554  899999999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=1.4e-08  Score=80.30  Aligned_cols=80  Identities=24%  Similarity=0.313  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      ..++.|++++++ ++.         +       ..+..|++|++|+|++|++++ +|     .++++++|++|++++|++
T Consensus        44 ~~l~~L~l~~~~-I~~---------l-------~gl~~L~nL~~L~Ls~N~l~~-l~-----~l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          44 DQVTTLQADRLG-IKS---------I-------DGVEYLNNLTQINFSNNQLTD-IT-----PLKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             TTCCEEECCSSC-CCC---------C-------TTGGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCC-CCC---------c-------cccccCCCCCEEeCcCCcCCC-Cc-----cccCCccccccccccccc
Confidence            468999999998 761         1       226678999999999999998 55     588999999999999999


Q ss_pred             CCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          155 NDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       155 ~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ++ +++ ++++++|+.|++++|.++
T Consensus       101 ~~-i~~-l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2         101 AD-ITP-LANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             CC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             cc-ccc-cccccccccccccccccc
Confidence            96 443 889999999999988763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8.9e-09  Score=77.16  Aligned_cols=99  Identities=19%  Similarity=0.308  Sum_probs=75.1

Q ss_pred             CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227           62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN  132 (179)
Q Consensus        62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~  132 (179)
                      | ....|.|...         ...++.|+++++. ++         .+|     ...|.++++|++|++++|.+...+|.
T Consensus         8 C-~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~-i~---------~l~-----~~~f~~l~~L~~L~ls~n~~~~~i~~   71 (242)
T d1xwdc1           8 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LR---------VIQ-----KGAFSGFGDLEKIEISQNDVLEVIEA   71 (242)
T ss_dssp             E-CSSEEEEESCSCSSCCSCSCSCCSEEEEESCC-CC---------EEC-----TTTTTTCTTCCEEEEESCTTCCEECS
T ss_pred             C-cCCEEEEeCCCCCCcCCCCCCCCCEEECcCCc-CC---------ccC-----hhHhhccchhhhhhhccccccceeec
Confidence            5 6777888631         1257788888877 65         233     23478899999999999999887765


Q ss_pred             ccccccCcccCCCEEeCc-CCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          133 KTYDSFGSLKQLKILNLG-DNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       133 ~~~~~l~~l~~L~~L~Ls-~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .   .|..+++++++++. .|++....|..|.++++|++|++++|+++
T Consensus        72 ~---~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          72 D---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             S---SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             c---ccccccccccccccccccccccccccccccccccccccchhhhc
Confidence            3   56778888988875 47788777788899999999999988763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=2.3e-08  Score=73.96  Aligned_cols=59  Identities=29%  Similarity=0.435  Sum_probs=30.3

Q ss_pred             CCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227          111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      ..+++|++|++++|++++ ++     .++.+++|++|++++|++++ +| .+..+++|+.|++++|.
T Consensus        65 ~~l~~L~~L~L~~n~i~~-l~-----~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTD-IK-----PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSC
T ss_pred             hhCCCCCEEeCCCccccC-cc-----ccccCccccccccccccccc-cc-ccccccccccccccccc
Confidence            345555555555555554 33     23455555555555555552 33 24555555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=3.9e-08  Score=72.03  Aligned_cols=61  Identities=26%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|+++.|.+.. +|     .+..+++|+.|++++|.+...  +.+..+++|++|++++|++
T Consensus        80 l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCC
T ss_pred             ccCCccccccccccccccc-cc-----ccccccccccccccccccccc--cccchhhhhHHhhhhhhhh
Confidence            4556666666666666554 33     356667777777777766642  2366777777777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=2.4e-08  Score=74.42  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=46.3

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR  174 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  174 (179)
                      +.++++|++|+|++|++++ +|     .++.+++|++|++++|++++ +|+ ++++++|++|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~-----~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-IS-----PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-----GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEE
T ss_pred             hcccccceecccCCCccCC-Ch-----hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEee
Confidence            6778888999999888886 55     57788889999999998884 553 7888889988886

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=1.1e-07  Score=69.60  Aligned_cols=93  Identities=20%  Similarity=0.358  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCC-cc--------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPS-AS--------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK  145 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip-~~--------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~  145 (179)
                      .+++.++++++. +..+..  +.+ ++ ..        ......+..+++|++|++++|++.. +|     .+..+++|+
T Consensus        84 ~~L~~L~l~~n~-~~~~~~--l~~-l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-----~l~~~~~L~  153 (199)
T d2omxa2          84 TKLVDILMNNNQ-IADITP--LAN-LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD-IS-----ALSGLTSLQ  153 (199)
T ss_dssp             TTCCEEECCSSC-CCCCGG--GTT-CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CG-----GGTTCTTCS
T ss_pred             cccccccccccc-cccccc--ccc-ccccccccccccccccccccchhhhhHHhhhhhhhhcc-cc-----ccccccccc
Confidence            467888888877 653221  111 00 00        0111236778999999999999875 44     678899999


Q ss_pred             EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +|++++|++++ ++ .++++++|++|++++|+++
T Consensus       154 ~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         154 QLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccC-Cc-cccCCCCCCEEECCCCCCC
Confidence            99999999995 44 3889999999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=1.4e-07  Score=70.15  Aligned_cols=62  Identities=26%  Similarity=0.414  Sum_probs=53.8

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +...++|++|++++|.++. ++     .++++++|++|+|++|++++ +|+ +.++++|++|+|++|+++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD-LT-----PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC
T ss_pred             hcccccccccccccccccc-ch-----hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC
Confidence            5667899999999999876 33     57889999999999999995 554 889999999999999975

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.50  E-value=8.8e-10  Score=81.52  Aligned_cols=85  Identities=24%  Similarity=0.326  Sum_probs=52.5

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcc------------------cc
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKT------------------YD  136 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~------------------~~  136 (179)
                      ..++.|+|+++. ++.+         +       .+..+++|++|+|++|+++. +|...                  +.
T Consensus        48 ~~L~~L~Ls~n~-I~~i---------~-------~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l~  109 (198)
T d1m9la_          48 KACKHLALSTNN-IEKI---------S-------SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS  109 (198)
T ss_dssp             TTCCEEECSEEE-ESCC---------C-------CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCHH
T ss_pred             cccceeECcccC-CCCc---------c-------cccCCccccChhhccccccc-ccccccccccccccccccccccccc
Confidence            467888888887 6621         1       13344555555555555543 33200                  00


Q ss_pred             ccCcccCCCEEeCcCCCCCCcCh--hhhCCCCCCCEEeCCCCcC
Q 048227          137 SFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       137 ~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~l  178 (179)
                      .+..+++|++|++++|+++. ++  ..+..+++|++|+|++|++
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccccccchhcc-ccccccccCCCccceeecCCCcc
Confidence            45667778888888888873 34  4677888888888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=4e-07  Score=67.03  Aligned_cols=56  Identities=25%  Similarity=0.338  Sum_probs=29.6

Q ss_pred             CCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCC
Q 048227          111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILR  174 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  174 (179)
                      ..+++|+++++++|++++ ++     .+.++++|+.|++++|+++ .+| .+.++++|++|+|+
T Consensus       153 ~~l~~L~~l~l~~n~l~~-i~-----~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         153 SRLTKLDTLSLEDNQISD-IV-----PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             GGCTTCSEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccccccccc-cc-----cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            344555555555555554 32     3455555555555555555 344 35555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.41  E-value=5.6e-09  Score=77.04  Aligned_cols=63  Identities=27%  Similarity=0.421  Sum_probs=53.1

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      +..+++|++|+|++|+++. ++     .+..+++|++|+|++|+++ .+|.....+++|++|++++|+++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i~-----~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-CC-----CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             HhcccccceeECcccCCCC-cc-----cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            6778999999999999985 65     5888999999999999998 67766666678888888888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.37  E-value=6e-07  Score=69.49  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=26.8

Q ss_pred             cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +.|++|++++|.++ .+|. ++++++|++|++++|.+
T Consensus        98 ~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccc-cccc-hhhhccceeeccccccc
Confidence            35888888888887 5664 57788888888887765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.3e-07  Score=67.27  Aligned_cols=62  Identities=31%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             CCCCcEEeccCCccCcc--ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227          113 FEELQNLDLSGNRFEGL--YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~--iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      ++.|++|+|++|+++..  ++.    .+..+++|+.|||++|+++..-+-......+|+.|++++|.+
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~----~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGT----HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHH----HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            45555555555555541  122    344455555555555555522111222233455555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.08  E-value=2.7e-06  Score=65.64  Aligned_cols=56  Identities=18%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227          112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .+++|++|+|++|+++. +|.    .   +++|+.|+|++|+|+ .+|+.   +++|++|++++|+++
T Consensus       282 ~~~~L~~L~Ls~N~l~~-lp~----~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE-LPA----L---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC----C---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             cCCCCCEEECCCCccCc-ccc----c---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            35789999999999985 886    4   578999999999998 68863   468999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3.7e-06  Score=62.33  Aligned_cols=78  Identities=12%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             EEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcC
Q 048227           79 QLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSI  158 (179)
Q Consensus        79 ~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~i  158 (179)
                      .++.++.+ ++         .+|.+      +  .+++++|++++|+++. +|..   .|.++++|++|++++|.+...+
T Consensus        12 ~i~c~~~~-l~---------~iP~~------l--~~~l~~L~Ls~n~i~~-l~~~---~f~~l~~L~~L~ls~n~~~~~i   69 (242)
T d1xwdc1          12 VFLCQESK-VT---------EIPSD------L--PRNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVI   69 (242)
T ss_dssp             EEEEESCS-CS---------SCCSC------S--CSCCSEEEEESCCCCE-ECTT---TTTTCTTCCEEEEESCTTCCEE
T ss_pred             EEEEeCCC-CC---------CcCCC------C--CCCCCEEECcCCcCCc-cChh---Hhhccchhhhhhhcccccccee
Confidence            46667777 65         45543      1  1478999999999987 5542   6889999999999999998766


Q ss_pred             hh-hhCCCCCCCEEeCCC-CcC
Q 048227          159 LR-YLNTLTSLTTLILRF-NNI  178 (179)
Q Consensus       159 P~-~l~~l~~L~~L~Ls~-N~l  178 (179)
                      |. .|.++++++++++.. |++
T Consensus        70 ~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          70 EADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             CSSSEESCTTCCEEEEECCTTC
T ss_pred             eccccccccccccccccccccc
Confidence            54 678899999998754 443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=9.2e-07  Score=62.70  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227           75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF  154 (179)
Q Consensus        75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l  154 (179)
                      ..++.|+|++|. ++.+         +.   -...+..+++|+.|+|++|+++. +++.   ......+|+.|++++|.+
T Consensus        65 ~~L~~L~Ls~N~-i~~l---------~~---~~~~~~~l~~L~~L~Ls~N~i~~-l~~l---~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          65 PELLSLNLSNNR-LYRL---------DD---MSSIVQKAPNLKILNLSGNELKS-EREL---DKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             TTCCCCCCCSSC-CCCC---------SG---GGTHHHHSTTCCCCCCTTSCCCC-GGGH---HHHTTCCCSSCCCTTSTT
T ss_pred             CCCCEeeCCCcc-ccCC---------ch---hHHHHhhCCcccccccccCcccc-chhh---hhhhccccceeecCCCCc
Confidence            468889999998 7621         11   01224568999999999999997 4321   223345799999999999


Q ss_pred             CCcChh-------hhCCCCCCCEEe
Q 048227          155 NDSILR-------YLNTLTSLTTLI  172 (179)
Q Consensus       155 ~g~iP~-------~l~~l~~L~~L~  172 (179)
                      +.....       .+..+++|++||
T Consensus       128 ~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         128 SDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CcCcccchhHHHHHHHHCCCCCEEC
Confidence            876542       366789999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.7e-06  Score=68.87  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             CCCCCCCcEEeccCCccCcc----ccCccccccC-cccCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCCcC
Q 048227          110 FYPFEELQNLDLSGNRFEGL----YENKTYDSFG-SLKQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFNNI  178 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~-~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l  178 (179)
                      +..+++|++|||++|.++..    +..    .+. ...+|++|+|++|+++..    ++..+..+++|++|+|++|++
T Consensus        51 L~~~~~L~~LdLs~N~i~~~~~~~l~~----~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          51 LRVNPALAELNLRSNELGDVGVHCVLQ----GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHH----TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HhcCCCCCEEECcCCcCChHHHHHHHH----HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            45688999999999998631    111    222 235799999999999753    567788899999999999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.9e-05  Score=59.29  Aligned_cols=62  Identities=24%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             CCCCCCcEEeccCC-ccCccccCccccccCcccCCCEEeCcC-CCCCCcChhhhCCCCCCCEEeCCCC
Q 048227          111 YPFEELQNLDLSGN-RFEGLYENKTYDSFGSLKQLKILNLGD-NRFNDSILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N-~l~g~iP~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N  176 (179)
                      ..+++|++|+++++ .+++..+.    .+..+++|++|++++ +.++......++++++|++|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~----~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhh----hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            35789999999885 57776666    888999999999999 6788877788899999999999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.6e-05  Score=60.81  Aligned_cols=63  Identities=27%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcC-CCCCCc-ChhhhCCCCCCCEEeCCCC
Q 048227          110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD-NRFNDS-ILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~-N~l~g~-iP~~l~~l~~L~~L~Ls~N  176 (179)
                      +..+++|++|+|+++.++...+.    .++.+++|++|++++ +.++.. +..-...+++|++|+++++
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             HHhCCCcccccccccCCCcHHHH----HHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            56678888888888888877776    778888888888888 456532 2333456788888888774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1e-05  Score=64.31  Aligned_cols=63  Identities=30%  Similarity=0.291  Sum_probs=45.1

Q ss_pred             CCCCcEEeccCCccCcc----ccCccccccC-cccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227          113 FEELQNLDLSGNRFEGL----YENKTYDSFG-SLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       113 l~~L~~L~Ls~N~l~g~----iP~~~~~~l~-~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .++|++|+|++|+++..    ++.    .+. ..+.|++|+|++|+|+.    .+++.+..+++|++|+|++|+|+
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~----~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQ----GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHH----HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccchhhhheeeecccCcccchhhh----hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            45788888888888642    222    332 35678888888888874    35566677788888888888874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.35  E-value=5.6e-05  Score=58.78  Aligned_cols=41  Identities=32%  Similarity=0.389  Sum_probs=18.7

Q ss_pred             CCCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCC
Q 048227          112 PFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFND  156 (179)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g  156 (179)
                      .+++|++|+|++|.|+..    +..    .+...++|++|+|++|.+++
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~----~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCH
T ss_pred             chhhhcccccccccccccccccccc----cccccccchhhhhhcCccCc
Confidence            344555555555554321    111    33444455555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.28  E-value=9e-05  Score=57.57  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             CCCCCCcEEeccCCccCcc-----ccCccccccCcccCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCCcCC
Q 048227          111 YPFEELQNLDLSGNRFEGL-----YENKTYDSFGSLKQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~-----iP~~~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      ...+.|+.|+|++|+++..     +..    .+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~----~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhhcccccccccccccccccchhh----hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3467899999999998642     223    567789999999999998643    4566778899999999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.78  E-value=0.00043  Score=48.55  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=15.9

Q ss_pred             ccCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCC
Q 048227          141 LKQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFN  176 (179)
Q Consensus       141 l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N  176 (179)
                      .+.|++|+|++|.++..    +-..+...++|++|++++|
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            34455555555555432    1122334444555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.60  E-value=0.00087  Score=46.88  Aligned_cols=69  Identities=14%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             CCCCCCcEEeccCC-ccCccccCccccccCcccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227          111 YPFEELQNLDLSGN-RFEGLYENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE  179 (179)
Q Consensus       111 ~~l~~L~~L~Ls~N-~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt  179 (179)
                      .+.+.|++|+|+++ .++..--..-+..+...+.|++|+|++|.+..    .+...+...+.|++|+|++|.++
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            34578999999874 45432100001146677889999999999974    23345566789999999999875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.54  E-value=0.0036  Score=43.31  Aligned_cols=94  Identities=17%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCCCCCCCCCcCccCCCCCccccC-CccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCC
Q 048227           74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLN-MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN  152 (179)
Q Consensus        74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~-~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N  152 (179)
                      ...+++|+|++...++           +..+.. ...+...++|++|++++|.++..--..-...+...+.++.+++++|
T Consensus        16 ~~~L~~L~L~~~~~i~-----------~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIP-----------VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             CTTCCEEECTTCTTCC-----------HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCCcEEEcCCCCCCC-----------HHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            4577888887633033           111000 1224567899999999998865322100013556789999999999


Q ss_pred             CCCCc----ChhhhCCCCCCCEEeC--CCCcC
Q 048227          153 RFNDS----ILRYLNTLTSLTTLIL--RFNNI  178 (179)
Q Consensus       153 ~l~g~----iP~~l~~l~~L~~L~L--s~N~l  178 (179)
                      .++..    +-..+...++|+.++|  ++|++
T Consensus        85 ~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          85 FISGSGILALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             cccchhHHHHHHHHHhCccccEEeeccCCCcC
Confidence            98753    3356677888987666  45555

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.06  E-value=0.0098  Score=40.93  Aligned_cols=93  Identities=18%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCCCCCCCCCcCccCCCCCccccC-CccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeC--
Q 048227           73 TTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLN-MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL--  149 (179)
Q Consensus        73 ~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~-~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~L--  149 (179)
                      ...++++|+++++. +.           +..... ...+...+.++.+++++|.++..--..-...+...+.|+.++|  
T Consensus        44 ~n~~L~~L~Ls~n~-l~-----------~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          44 TNTYVKKFSIVGTR-SN-----------DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             TCCSCCEEECTTSC-CC-----------HHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred             cCCccCeeeccCCc-cc-----------HHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeecc
Confidence            45789999999998 76           111000 1123456889999999999864321100115677788987555  


Q ss_pred             cCCCCCC----cChhhhCCCCCCCEEeCCCCc
Q 048227          150 GDNRFND----SILRYLNTLTSLTTLILRFNN  177 (179)
Q Consensus       150 s~N~l~g----~iP~~l~~l~~L~~L~Ls~N~  177 (179)
                      +.|.+..    .+...+...++|+.|+++.++
T Consensus       112 ~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         112 QSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            5777754    355667788999999998775