Citrus Sinensis ID: 048248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
ESTVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccc
Coil and Loop (DISEMBL)
ESTVDHKLFRALRHGYTDKVREFARLNgnrilgtsqngdTALHIAARFGHEILVMEILKHQsdlvsvpnhksetpmHVAARagnfgaaqifmrphgngnntgtfDDILRKrdeegntplhnavrkcDGKMAFTMikkdpepirynnkakqgpnnltLLHSAIIKSQFVVMAKILEAKRDLINvrdernrnPLRYAAALGHFKIAcrlsdeddslvyqhdcngqsplhlasqnGQLSILENLlhsypdsiefidnknRNILHLAAQNGHADVVVFILKqpevedlinssdvdgntplHLAAINNHFNIILVLARNMS
Flexible Loop (DISEMBL)
estvdhklfralrhgytdKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRdeegntplhnavrkcdgkMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRdlinvrdernrNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS
Low Complexity Region (SEG)
ESTVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS
Disordered region (IsUnstruct)
******KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS***********VAARAGNFGAAQIFMR*****************************VRKCDGKMAFTMI*****************NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA****
Disordered Region (DISOPRED)
ESTVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM*
Disordered Region (DISEMBL)
ESTVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS
Disordered Region (DISPRO)
****DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESTVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
G0LXV8	1351	Alpha-latrotoxin-Lh1a (Fr	N/A	no	0.889	0.207	0.280	1e-19
O15084	1053	Serine/threonine-protein	no	no	0.879	0.264	0.276	3e-19
P23631	1401	Alpha-latrotoxin-Lt1a OS=	N/A	no	0.892	0.201	0.281	3e-18
Q505D1	1053	Serine/threonine-protein	yes	no	0.879	0.264	0.269	4e-18
Q8N8A2	993	Serine/threonine-protein	no	no	0.870	0.276	0.255	2e-17
Q5ZLC8	1073	Serine/threonine-protein	no	no	0.911	0.268	0.275	2e-17
Q5F478	990	Serine/threonine-protein	no	no	0.860	0.274	0.247	3e-17
Q8NB46	1076	Serine/threonine-protein	no	no	0.911	0.267	0.265	5e-16
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.816	0.065	0.266	9e-16
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.816	0.066	0.266	1e-15

>sp|G0LXV8|LATA_LATHA Alpha-latrotoxin-Lh1a (Fragment) OS=Latrodectus hasseltii PE=1 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 160/360 (44%), Gaps = 79/360 (21%)

Query: 21  REFARLN--GNRILGTSQNGDTALHIAARFGHE-ILVMEILKHQSDLVSVPNHKSETPMH 77
           +EF +LN  G  I  T + G T  H AA+ G+  I++      +S+ ++ P+ K  TP+H
Sbjct: 460 KEFTKLNYDGANIRATFEQGRTVFHAAAKSGNSRIMIGLTFLVKSNELNQPDKKGYTPIH 519

Query: 78  VAARAGNFGAAQIFMRPHGNGNNTGTFDDI--------------------------LRKR 111
           VAA +GN G   + ++  G   N+ T++ +                          + +R
Sbjct: 520 VAADSGNAGIVNLLIQ-RGVSINSKTYNFLQTPLHLAAQRGFVTTFQRLMESPEININER 578

Query: 112 DEEGNTPLHNAVRKCDGKM-AFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVM 170
           D++G TPLH AVR  +  + AF     +   I  N K+ +G   LT  H AIIK  + V 
Sbjct: 579 DKDGFTPLHYAVRGGERILEAFI----NQIRIDLNAKSNKG---LTPFHLAIIKDDWPVA 631

Query: 171 AKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD-----------------S 213
           + +L +K+  +N  DE N   L YAA LG+ +   +L +  +                 +
Sbjct: 632 STLLGSKKVDVNAVDENNMTALHYAAILGYLETTKQLINLKEINADVVSSPGLLSALHYA 691

Query: 214 LVYQHD------------------CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNK 255
           ++Y+HD                    G +PLHLA   G+  IL +L+     +IE   ++
Sbjct: 692 ILYKHDDVASFLLRSSNVNVNLKALGGITPLHLAVIQGRTQIL-SLMFDIGVNIEQQTDE 750

Query: 256 NRNILHLAAQNGHADVVVFILKQ-PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
               LHLAA + + +++  +L Q    E   NS    G TPLHLA         L+L  N
Sbjct: 751 KYTPLHLAAMSKYPELIQILLDQGSNFEAKTNS----GATPLHLATFKGKSKAALILLNN 806

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). Induces rapid muscle contracture and loss of twitch tension when added to the isolated and indirectly stimulated chick biventer cervicis nerve-muscle preparation.
Latrodectus hasseltii (taxid: 256736)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 8   LFRALRHGYTDKVREFARLN-GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
           L  ++ +G+TD V  ++ LN G  +    + G TALH  A  GHE  V  +L+H +  + 
Sbjct: 657 LMLSVLNGHTDCV--YSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCL- 713

Query: 67  VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
           + + +  TP+H++A  G+ G     ++      +  + D      D  G T LH A    
Sbjct: 714 LRDSRGRTPIHLSAACGHIGVLGALLQ------SAASMDANPATADNHGYTALHWACY-- 765

Query: 127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEA-KRDLINVRD 185
           +G      +  + E  +     K   N  + LH A+I         +++     ++N  D
Sbjct: 766 NGHETCVELLLEQEVFQ-----KTEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATD 820

Query: 186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSY 245
            + R PL  AA   H +   +L    ++ V   D  G++PL +A++NGQ + +E L+ S 
Sbjct: 821 SKGRTPLHAAAFTDHVECL-QLLLSHNAQVNSVDSTGKTPLMMAAENGQTNTVEMLVSSA 879

Query: 246 PDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
              +   DN     LHLA   GH    + IL++    +LIN+++    TPLH+AA N
Sbjct: 880 SAELTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARN 936

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|P23631|LATA_LATTR Alpha-latrotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=2

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 158/359 (44%), Gaps = 77/359 (21%)

Query: 21  REFARLN--GNRILGTSQNGDTALHIAARFGHE-ILVMEILKHQSDLVSVPNHKSETPMH 77
           +EF +LN  G  I  T  +G T  H AA+ G++ I+       +S  ++ P+ K  TP+H
Sbjct: 472 KEFTKLNYDGANIRATFDHGRTVFHAAAKSGNDKIMFGLTFLAKSTELNQPDKKGYTPIH 531

Query: 78  VAARAGNFGAAQIFMRPHGNGNN------------------TGTFDDILR-------KRD 112
           VAA +GN G   + ++   + N+                    TF  ++        +RD
Sbjct: 532 VAADSGNAGIVNLLIQRGVSINSKTYHFLQTPLHLAAQRGFVTTFQRLMESPEININERD 591

Query: 113 EEGNTPLHNAVRKCDGKM-AFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMA 171
           ++G TPLH A+R  +  + AF     +   I  N K+  G   LT  H AIIK+ + V +
Sbjct: 592 KDGFTPLHYAIRGGERILEAFL----NQISIDVNAKSNTG---LTPFHLAIIKNDWPVAS 644

Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD-----------------SL 214
            +L +K+  IN  DE N   L YAA LG+ +   +L +  +                 ++
Sbjct: 645 TLLGSKKVDINAVDENNITALHYAAILGYLETTKQLINLKEINANVVSSPGLLSALHYAI 704

Query: 215 VYQHD------------------CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKN 256
           +Y+HD                    G +PLHLA   G+  IL +L+     +IE   ++ 
Sbjct: 705 LYKHDDVASFLMRSSNVNVNLKALGGITPLHLAVIQGRKQIL-SLMFDIGVNIEQKTDEK 763

Query: 257 RNILHLAAQNGHADVVVFILKQ-PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
              LHLAA + + +++  +L Q    E   NS    G TPLHLA         L+L  N
Sbjct: 764 YTPLHLAAMSKYPELIQILLDQGSNFEAKTNS----GATPLHLATFKGKSQAALILLNN 818

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 8   LFRALRHGYTDKVREFARLN-GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
           L  ++ +G+TD V  ++ LN G  +    + G TALH  A  GHE  V  +L+H +  + 
Sbjct: 657 LMLSVLNGHTDCV--YSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCL- 713

Query: 67  VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
           + + +  TP+H++A  G+ G     ++      +  + D      D  G T LH A    
Sbjct: 714 LRDSRGRTPIHLSAACGHIGVLGALLQ------SATSVDANPAVVDNHGYTALHWACYNG 767

Query: 127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEA-KRDLINVRD 185
                  ++++D          K   N  + LH A+I         ++++    ++N  D
Sbjct: 768 HETCVELLLEQDVFQ-------KIDGNAFSPLHCAVINDNEGAAEMLIDSLGASIVNATD 820

Query: 186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSY 245
            + R PL  AA   H +   +L    ++ V   D  G++PL +A++NGQ + +E L+ S 
Sbjct: 821 SKGRTPLHAAAFTDHVECL-QLLLSQNAQVNSADSTGKTPLMMAAENGQTNTVEMLVSSA 879

Query: 246 PDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
              +   D      LHLA   GH    + IL++    +LIN+++    TPLH+AA N
Sbjct: 880 SADLTLQDKSKNTALHLACGKGHETSALLILEKITDRNLINATNAALQTPLHVAARN 936

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 139/345 (40%), Gaps = 70/345 (20%)

Query: 27  NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL---------------------- 64
           NG  I    ++G+T LH+AAR+GHE+L+  ++   +D                       
Sbjct: 328 NGGEIDCVDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDC 387

Query: 65  ----------VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEE 114
                     +  P+    T +H AA  GN    ++      +            K+D+ 
Sbjct: 388 CRKLLSSGFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGAD----------FHKKDKC 437

Query: 115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG---------PNNLTLLHSAIIKS 165
           G TPLH A   C      T++         ++  +             N T+L +A   S
Sbjct: 438 GRTPLHYAAANCHFHCIETLVTTGANVNETDDWGRTALHYAAASDMDRNKTILGNAHDNS 497

Query: 166 QFVVMAKILEAKRDLI------------NVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
           + +  A+ L+ K   +            ++RD+   N + YAAA GH +    L +  +S
Sbjct: 498 EELERARELKEKEATLCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELLLERTNS 557

Query: 214 LVYQHDCNG-QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
              + D    +SPLHLA+ NG    LE LL S  D ++  D K R  L LAA  GH + V
Sbjct: 558 GFEESDSGATKSPLHLAAYNGHHQALEVLLQSLVD-LDIRDEKGRTALDLAAFKGHTECV 616

Query: 273 VFILKQPEVEDLINSSDVDGNTPLHLAAINNH---FNIILVLARN 314
             ++ Q     +    +V   TPLH + IN H     ++L +A N
Sbjct: 617 EALINQG--ASIFVKDNVTKRTPLHASVINGHTLCLRLLLEIADN 659

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 135/305 (44%), Gaps = 17/305 (5%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A+ +G+ D V       G+      + G TALH  A  G E  +  +L H +  V  
Sbjct: 691 LMLAIMNGHVDCVHLLLE-KGSTADAADKRGRTALHRGAVTGCEDCLAALLDHDA-FVLC 748

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
            + K  TP+H A+  G+    +  ++      +T   D ++   D  G +P+H A     
Sbjct: 749 RDFKGRTPIHFASACGHLEILRTLLQA---ALSTDPLDSVV---DYSGYSPMHWASYSGH 802

Query: 128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEA-KRDLINVRDE 186
                 +++ +P        A    N  T LH A+I +Q      ++EA    ++N RD 
Sbjct: 803 EDCLELLLEHNP-------FAYLEGNPFTPLHCAVINNQDSTAEMLVEALGAKIVNSRDA 855

Query: 187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYP 246
           + R PL +AAA        +L     + V   D  G++PL +AS+NG  + +E LL+   
Sbjct: 856 KGRTPL-HAAAFADNIHGLQLLLRHQAEVDTTDKLGRTPLMMASENGHTAAVEFLLYQAK 914

Query: 247 DSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN 306
            +I  +D      LHLA   GH    + IL + +   LIN+S+     PLH+AA N    
Sbjct: 915 ANITVLDVNKNTALHLACSKGHEKCALLILGETQDLGLINASNSALQMPLHIAARNGLAT 974

Query: 307 IILVL 311
           ++  L
Sbjct: 975 VVQAL 979

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 137/339 (40%), Gaps = 67/339 (19%)

Query: 27  NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL---------------------- 64
           NG  I    ++G+T LH+AAR+GHE+L+  ++   +D                       
Sbjct: 328 NGGEIDCVDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHNMFPLHLAALNAHSDC 387

Query: 65  ----------VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEE 114
                     +  P+    T +H AA  GN    ++      + N          K+D+ 
Sbjct: 388 CRKLLSSGFEIDTPDSFGRTCLHAAAAGGNVECIKLLQSSGADFN----------KKDKR 437

Query: 115 GNTPLHNAVRKCDGKMAFTMIKKDP----------EPIRYNNKAKQGPNNLTLLHSAIIK 164
           G TPLH A   C      T++               P+ Y   +        L +S    
Sbjct: 438 GRTPLHYAAANCHFHCIETLVTTGANINETDDWGRTPLHYAAASDMDRKKNILGNSHENA 497

Query: 165 SQFVVMAKILEAKRDLI-----------NVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
            +    +++ E +  L            +++D+   N + YAAA GH +    L +++ +
Sbjct: 498 EELERTSEMKEKEAALCLEFLLQNDANPSIQDKEGYNTVHYAAAYGHRQCLELLLEKNSN 557

Query: 214 LVYQHDCNG-QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
           +  + D +  +SPLHLA+ NG    LE LL S  D ++  D K R  L LAA  GHA+ V
Sbjct: 558 MFEESDSSATKSPLHLAAYNGHHQALEVLLQSLVD-LDIKDEKGRTALDLAAFKGHAECV 616

Query: 273 VFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
             ++ Q     +    +V   TPLH + IN H   + +L
Sbjct: 617 EALISQG--ASVTVKDNVTKRTPLHASVINGHTPCLRLL 653

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q8NB46|ANR52_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Homo sapiens GN=ANKRD52 PE=1 SV=3

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 17/305 (5%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A+ +G+ D V       G+        G TALH  A  G E  +  +L H +  V  
Sbjct: 692 LMLAIMNGHVDCVHLLLE-KGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDA-FVLC 749

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
            + K  TP+H+A+  G+    +  ++         + D +    D  G +P+H A     
Sbjct: 750 RDFKGRTPIHLASACGHTAVLRTLLQA------ALSTDPLDAGVDYSGYSPMHWASYT-- 801

Query: 128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEA-KRDLINVRDE 186
           G      +  +  P  Y        N  T LH A+I +Q      +L A    ++N RD 
Sbjct: 802 GHEDCLELLLEHSPFSYLEG-----NPFTPLHCAVINNQDSTTEMLLGALGAKIVNSRDA 856

Query: 187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYP 246
           + R PL +AAA        R+  +  + V   D  G++ L  A++NGQ + +E LL+   
Sbjct: 857 KGRTPL-HAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAENGQTAAVEFLLYRGK 915

Query: 247 DSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN 306
             +  +D      LHLA   GH    + IL + +   LIN+++     PLH+AA N   +
Sbjct: 916 ADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMPLHIAARNGLAS 975

Query: 307 IILVL 311
           ++  L
Sbjct: 976 VVQAL 980

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 84.3 bits (207), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 132/281 (46%), Gaps = 23/281 (8%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           T+++G T LHIAA +G+ + V  +L ++   V        TP+HVA++ GN    ++ + 
Sbjct: 229 TTESGFTPLHIAAHYGN-VNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLD 287

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
             G           +  +  +G TPLH A R    ++   ++++   P+    K     N
Sbjct: 288 RGGQ----------IDAKTRDGLTPLHCAARSGHDQVVELLLERGA-PLLARTK-----N 331

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
            L+ LH A        +  +L+ K  + +V  +     L  AA  GH+++   L D+  +
Sbjct: 332 GLSPLHMAAQGDHVECVKHLLQHKAPVDDVTLDY-LTALHVAAHCGHYRVTKLLLDKRAN 390

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
                  NG +PLH+A +  ++ ++E LL  Y  SI+ I       +H+AA  GH ++V+
Sbjct: 391 -PNARALNGFTPLHIACKKNRIKVME-LLVKYGASIQAITESGLTPIHVAAFMGHLNIVL 448

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
            +L+     D+ N   + G T LH+AA      ++  L RN
Sbjct: 449 LLLQNGASPDVTN---IRGETALHMAARAGQVEVVRCLLRN 486

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 132/281 (46%), Gaps = 23/281 (8%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           T+++G T LHIAA +G+ + V  +L ++   V        TP+HVA++ GN    ++ + 
Sbjct: 229 TTESGFTPLHIAAHYGN-VNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLD 287

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
             G           +  +  +G TPLH A R    ++   ++++   P+    K     N
Sbjct: 288 RGGQ----------IDAKTRDGLTPLHCAARSGHDQVVELLLERKA-PLLARTK-----N 331

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
            L+ LH A        +  +L+ K  + +V  +     L  AA  GH+++   L D+  +
Sbjct: 332 GLSPLHMAAQGDHVECVKHLLQYKAPVDDVTLDY-LTALHVAAHCGHYRVTKLLLDKRAN 390

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
                  NG +PLH+A +  ++ ++E LL  Y  SI+ I       +H+AA  GH ++V+
Sbjct: 391 -PNARALNGFTPLHIACKKNRIKVME-LLVKYGASIQAITESGLTPIHVAAFMGHLNIVL 448

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
            +L+     D+ N   + G T LH+AA      ++  L RN
Sbjct: 449 LLLQNGASPDVTN---IRGETALHMAARAGQVEVVRCLLRN 486

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
224117424	381	predicted protein [Populus trichocarpa]	0.971	0.805	0.329	1e-41
224109440	577	predicted protein [Populus trichocarpa]	0.971	0.532	0.329	8e-41
224117420	577	predicted protein [Populus trichocarpa]	0.971	0.532	0.326	1e-40
224117416	451	predicted protein [Populus trichocarpa]	0.971	0.680	0.320	4e-40
225446910	777	PREDICTED: ankyrin repeat-containing pro	0.882	0.359	0.333	3e-35
297739103	647	unnamed protein product [Vitis vinifera]	0.863	0.421	0.336	4e-35
296087902	472	unnamed protein product [Vitis vinifera]	0.718	0.480	0.327	6e-35
359485365	781	PREDICTED: ankyrin repeat-containing pro	0.882	0.357	0.331	1e-34
302143222	617	unnamed protein product [Vitis vinifera]	0.927	0.474	0.321	3e-34
147820412	624	hypothetical protein VITISV_004974 [Viti	0.927	0.469	0.321	5e-34

>gi|224117424|ref|XP_002317571.1| predicted protein [Populus trichocarpa] gi|222860636|gb|EEE98183.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 172/343 (50%), Gaps = 36/343 (10%)

Query: 4   VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSD 63
           +D +L+R  + G    + +    N   +   +  G+T LHIA +FGH+ +V+EI      
Sbjct: 1   MDSRLYRVAKSGNVYILLQLLNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCRS 60

Query: 64  LVSVPNHKSETPMHVAARAGNFGAAQIFM-------RPHGNGNNTGTFDDILRKRDEEGN 116
           L++ PN   ++P+HVAAR G+F      +       R       TG FD ILR+ ++E N
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKEILSAKRISTENGKTGKFD-ILRQGNKENN 119

Query: 117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL--------------------- 155
           T LH AVR  +  +   +++ D +   + N A + P  L                     
Sbjct: 120 TVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDVLNQILISNPASA 179

Query: 156 -------TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLS 208
                  T LH+A+I+    +M  +L AK  LI   D   R  L YAA+LG  +   RL 
Sbjct: 180 HGGSEGHTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALYYAASLGDRRAVERLL 239

Query: 209 DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH 268
           + D+   Y  D NG SPLH+A++NG   ++E ++H  PDS E +D   R++LH A  +G 
Sbjct: 240 EFDECTAYVLDKNGHSPLHVAARNGHADVIERIIHYCPDSGELLDLNGRSVLHFAVLSGK 299

Query: 269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +VV  +++  E++ LIN +D  GNTPLHLAAI     I+  L
Sbjct: 300 VNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCL 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109440|ref|XP_002333254.1| predicted protein [Populus trichocarpa] gi|222835818|gb|EEE74253.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 172/343 (50%), Gaps = 36/343 (10%)

Query: 4   VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSD 63
           +D +L+R  + G    + +    N   +   +  G+T LHIA +FGH+ +V+EI      
Sbjct: 1   MDSRLYRVAKSGNVYILLQLLNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCGS 60

Query: 64  LVSVPNHKSETPMHVAARAGNFGAAQIFM-------RPHGNGNNTGTFDDILRKRDEEGN 116
           L++ PN   ++P+HVAAR G+F      +       R       TG FD ILR+ + E N
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKEILAAKRISTENGKTGKFD-ILRQGNNENN 119

Query: 117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNN---------KAKQGPNNL------------ 155
           T LH AVR  +  +   +++ D +   + N          A++G  NL            
Sbjct: 120 TVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKNLLNQILISTPASA 179

Query: 156 -------TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLS 208
                  T LH+A+I+    +M  +L AK  LI   D   R  L +AA+LG  +   RL 
Sbjct: 180 HGGSEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHHAASLGDRRAVERLL 239

Query: 209 DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH 268
           + D+   Y  D NG SPLH+A+ NG   ++E ++H  PDS E +D   R++LH A  +G 
Sbjct: 240 EFDECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDLNGRSVLHFAVLSGK 299

Query: 269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +VV  +++  E++ LIN +D  GNTPLHLAAI     I+  L
Sbjct: 300 VNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCL 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117420|ref|XP_002317570.1| predicted protein [Populus trichocarpa] gi|222860635|gb|EEE98182.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 170/343 (49%), Gaps = 36/343 (10%)

Query: 4   VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSD 63
           +D +L+R  + G    + +    N   +   +  G+T LHIA +FGH+ +V+EI      
Sbjct: 1   MDSRLYRVAKSGNVYILLQLLNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCRS 60

Query: 64  LVSVPNHKSETPMHVAARAGNFGAAQIFM-------RPHGNGNNTGTFDDILRKRDEEGN 116
           L++ PN   ++P+HVAAR G+F      +       R       TG FD ILR+ + E N
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFD-ILRQGNNENN 119

Query: 117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL--------------------- 155
           T LH AVR  +  +   +++ D +   + N A + P  L                     
Sbjct: 120 TVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDILNQILISTPASA 179

Query: 156 -------TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLS 208
                  T LH+A+I+    +M  +L AK  LI   D   R  L +AA+LG  +   RL 
Sbjct: 180 HGGSEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHHAASLGDRRAVERLL 239

Query: 209 DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH 268
           + D+   Y  D NG SPLH+A+ NG   ++E ++H  PDS E +D   R++LH A  +G 
Sbjct: 240 EFDECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDLNGRSVLHFAVLSGK 299

Query: 269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +VV  +++  E++ LIN +D  GNTPLHLAAI     I+  L
Sbjct: 300 VNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCL 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117416|ref|XP_002317569.1| predicted protein [Populus trichocarpa] gi|222860634|gb|EEE98181.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 171/343 (49%), Gaps = 36/343 (10%)

Query: 4   VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSD 63
           +D +L+R ++ G    + +        +   +  G+T LHIA +FGH+ +V+EI      
Sbjct: 1   MDSRLYRVVKSGNVYILLQLLNEKPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCRS 60

Query: 64  LVSVPNHKSETPMHVAARAGNFGAAQIFM-------RPHGNGNNTGTFDDILRKRDEEGN 116
           L++ PN   ++P+HVAAR G+F      +       R       TG FD ILR+ + E N
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFD-ILRQGNNENN 119

Query: 117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL--------------------- 155
           T LH AVR  +  +   +++ D +   + N A + P  L                     
Sbjct: 120 TVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDILNQILISTPASA 179

Query: 156 -------TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLS 208
                  T LH+A+I+    +M  +L AK  LI   D   R  L +AA+LG  +   RL 
Sbjct: 180 HGGSEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHHAASLGDRRAVERLL 239

Query: 209 DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH 268
           + D+ + Y  D NG SPLH+A++NG   ++E ++H  PDS E +D   R++LH A  +  
Sbjct: 240 EFDECIAYVLDKNGHSPLHVAARNGHADVIERIIHYCPDSGELLDLNGRSVLHFAVLSAK 299

Query: 269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +VV  +++  E++ LIN +D  GNTPLHLAAI     I+  L
Sbjct: 300 VNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCL 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446910|ref|XP_002266647.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 159/318 (50%), Gaps = 39/318 (12%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
            S   +T LHIAA FGH  L   I+K   DL+   N K +T +H+AAR  N    +I M 
Sbjct: 222 VSPRKNTCLHIAASFGHHDLAKYIVKECPDLIKNKNSKGDTALHIAARKRNLSFVKIVMD 281

Query: 94  --PHGNGNNTGTFD---DILRKRDEEGNTPLHNA-VRKC-DGKMAFTMIKKDPEPIRYNN 146
             P G+G +         +L   ++EGNT LH A + +C   ++   +IK DP+   Y N
Sbjct: 282 SCPSGSGASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVVEILIKTDPQVAYYPN 341

Query: 147 KAKQGPNNLTL------------------------------LHSAIIKSQFVVMAKILEA 176
           K  + P  L                                +H AI+     ++ KIL  
Sbjct: 342 KEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAKPAVHGAIMGKNKEMLEKILAM 401

Query: 177 KRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLS 236
           K  L++ +DE  R PL  AA++G+ +    L D+ +   YQ D +G  P+H+AS  G + 
Sbjct: 402 K--LVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMDSDGFCPIHVASMRGNVD 459

Query: 237 ILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPL 296
           I++ LL    DSIE +  + +NILH+AA+ G  +VV F+LK+  +E+ IN  D  GNTPL
Sbjct: 460 IVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEERLENFINEKDKGGNTPL 519

Query: 297 HLAAINNHFNIILVLARN 314
           HLA ++ H  ++  L  +
Sbjct: 520 HLATMHRHPKVVSSLTWD 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739103|emb|CBI28754.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 157/312 (50%), Gaps = 39/312 (12%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
            S   +T LHIAA FGH  L   I+K   DL+   N K +T +H+AAR  N    +I M 
Sbjct: 92  VSPRKNTCLHIAASFGHHDLAKYIVKECPDLIKNKNSKGDTALHIAARKRNLSFVKIVMD 151

Query: 94  --PHGNGNNTGTFD---DILRKRDEEGNTPLHNA-VRKC-DGKMAFTMIKKDPEPIRYNN 146
             P G+G +         +L   ++EGNT LH A + +C   ++   +IK DP+   Y N
Sbjct: 152 SCPSGSGASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVVEILIKTDPQVAYYPN 211

Query: 147 KAKQGPNNLTL------------------------------LHSAIIKSQFVVMAKILEA 176
           K  + P  L                                +H AI+     ++ KIL  
Sbjct: 212 KEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAKPAVHGAIMGKNKEMLEKILAM 271

Query: 177 KRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLS 236
           K  L++ +DE  R PL  AA++G+ +    L D+ +   YQ D +G  P+H+AS  G + 
Sbjct: 272 K--LVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMDSDGFCPIHVASMRGNVD 329

Query: 237 ILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPL 296
           I++ LL    DSIE +  + +NILH+AA+ G  +VV F+LK+  +E+ IN  D  GNTPL
Sbjct: 330 IVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEERLENFINEKDKGGNTPL 389

Query: 297 HLAAINNHFNII 308
           HLA ++ H  ++
Sbjct: 390 HLATMHRHPKVV 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087902|emb|CBI35185.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 139/275 (50%), Gaps = 48/275 (17%)

Query: 38  GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
            DTALH+A R GH  +V  +++    L+ + N+  E+P+++A   G F  A         
Sbjct: 22  ADTALHVAVRNGHLEVVNRLVQENPKLLDLVNNHKESPLYLAVERGFFKIA--------- 72

Query: 98  GNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTL 157
                  D++L+    E +                                 +G   +T 
Sbjct: 73  -------DELLKGNSSECSC--------------------------------EGTKGMTA 93

Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ 217
           LH+A+I++   +M  + E K+D+I   DE    PL YAA LGH K   +L   D S+   
Sbjct: 94  LHAAVIRTHKDIMEVLFEMKKDVIKKADEFGWTPLHYAAHLGHLKATEKLLKYDKSVAGL 153

Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
            D      LH+A++ G  +++E ++   PD  + IDNK R ILH+AAQ G+A VV +ILK
Sbjct: 154 LDVEHSCALHIAAKEGHTNVMEQIITCLPDVYDLIDNKGRTILHVAAQYGNARVVKYILK 213

Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
           +P +E +IN  D +GNTPLHLAAI  H+ ++++LA
Sbjct: 214 KPNLESIINEPDKEGNTPLHLAAIYGHYGVVIMLA 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485365|ref|XP_003633264.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 158/314 (50%), Gaps = 35/314 (11%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
            S   +T LHIAA FGH  L   I++   DL+   N K +T +H+AAR  N    +I M 
Sbjct: 230 VSPRKNTCLHIAASFGHHDLAKYIVRECPDLIKNKNSKGDTALHIAARKRNLSFVKIVMD 289

Query: 94  --PHGNGNNTGTFD---DILRKRDEEGNTPLHNA-VRKC-DGKMAFTMIKKDPEPIRYNN 146
             P G+G +         +L   ++EGNT LH A + +C   ++   +IK DP+   Y N
Sbjct: 290 SFPSGSGASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVVEILIKADPQVAYYPN 349

Query: 147 KAKQGPNNLTL--------------------------LHSAIIKSQFVVMAKILEAKRDL 180
           K  + P  L                            +H AI+     ++ KIL  K  L
Sbjct: 350 KEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKVHGAIMGKNKEMLEKILAMK--L 407

Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
           ++ +D+  R PL  AA++G+ +    L D+ +   YQ D +G  P+H+AS  G + I++ 
Sbjct: 408 VHQKDKDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQTDSDGFCPIHVASMRGNVDIVKK 467

Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
           LL    DSIE +  +  NILH+AA+ G  +VV F+LK+  +E+ IN  D  GNTPLHLA 
Sbjct: 468 LLQVSSDSIELLSKRGENILHVAAKYGKDNVVNFVLKEERLENFINEKDNGGNTPLHLAT 527

Query: 301 INNHFNIILVLARN 314
           ++ H  ++  L  +
Sbjct: 528 MHRHPKVVSSLTWD 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 162/327 (49%), Gaps = 34/327 (10%)

Query: 22  EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL-VSVPNHKSETPMHVAA 80
           E + LN +    +S   +TALHIAAR G++ +V  +L   +   +   N K ETP+H+AA
Sbjct: 29  EISNLNLHVGFDSSHRKNTALHIAARVGNKKMVEALLSEGTPASLLTENSKHETPLHIAA 88

Query: 81  RAGNFGAAQIFMRPHGNGNNT--GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKK- 137
           R+G+    +  +       +   G    +LR R+ EGNTPLH AVR         +++  
Sbjct: 89  RSGHVHVVKFLIDWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEAN 148

Query: 138 DPEPIRYNNKAKQGP------------------------------NNLTLLHSAIIKSQF 167
           D + +   N A + P                              +  T+LH AI+++  
Sbjct: 149 DSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRADL 208

Query: 168 VVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLH 227
             M  I++   +L+N +D   R+PL YAAA G   +   L     S     D N  +P H
Sbjct: 209 KTMKIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLKPSNGSFLDNNLATPAH 268

Query: 228 LASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINS 287
           +A++NG L++L+  +      +E ++N ++NILH+AAQNGH  VV +I     V DL+N 
Sbjct: 269 MAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKVVRYIQNMFMVNDLLNE 328

Query: 288 SDVDGNTPLHLAAINNHFNIILVLARN 314
           +D DGNTPLHLAA   H +I+  L + 
Sbjct: 329 TDEDGNTPLHLAAAKLHSSIVSTLVQT 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820412|emb|CAN63354.1| hypothetical protein VITISV_004974 [Vitis vinifera]

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 162/327 (49%), Gaps = 34/327 (10%)

Query: 22  EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL-VSVPNHKSETPMHVAA 80
           E + LN +    +S   +TALHIAAR G++ +V  +L   +   +   N K ETP+H+AA
Sbjct: 29  EISNLNLHVGFDSSHRKNTALHIAARVGNKKMVEALLSEGTPASLLTENSKHETPLHIAA 88

Query: 81  RAGNFGAAQIFMRPHGNGNNT--GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKK- 137
           R+G+    +  +       +   G    +LR R+ EGNTPLH AVR         +++  
Sbjct: 89  RSGHVHVVKFLIDWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEAN 148

Query: 138 DPEPIRYNNKAKQGP------------------------------NNLTLLHSAIIKSQF 167
           D + +   N A + P                              +  T+LH AI+++  
Sbjct: 149 DSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRADL 208

Query: 168 VVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLH 227
             M  I++   +L+N +D   R+PL YAAA G   +   L     S     D N  +P H
Sbjct: 209 KTMKIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLKPSNGSFLDNNLATPAH 268

Query: 228 LASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINS 287
           +A++NG L++L+  +      +E ++N ++NILH+AAQNGH  VV +I     V DL+N 
Sbjct: 269 MAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKVVRYIQNMFMVNDLLNE 328

Query: 288 SDVDGNTPLHLAAINNHFNIILVLARN 314
           +D DGNTPLHLAA   H +I+  L + 
Sbjct: 329 TDEDGNTPLHLAAAKLHSSIVSTLVQT 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.974	0.454	0.294	1.1e-27
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.863	0.443	0.283	5.3e-24
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.971	0.536	0.278	4.1e-23
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.981	0.446	0.273	7.9e-22
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.816	0.377	0.263	5.5e-21
UNIPROTKB|O15084	1053	ANKRD28 "Serine/threonine-prot	0.873	0.262	0.280	1.2e-20
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.727	0.358	0.283	5.8e-20
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.762	0.416	0.315	5.9e-20
MGI|MGI:2145661	1053	Ankrd28 "ankyrin repeat domain	0.876	0.263	0.268	3.6e-19
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.971	0.458	0.274	4.6e-19

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 94/319 (29%), Positives = 152/319 (47%)

Query:     2 STVDH---KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEIL 58
             S  DH    L  A   G+TD V          ++ ++  G+ ALH+AA  GH  +V  ++
Sbjct:   126 SVNDHGNTMLHLAAAAGHTDLVCYILNAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALV 185

Query:    59 KHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFM-RPHGNGNN--TGTFDDILRKRDEEG 115
                 D +S         ++ A       A  + + R H    +        +    + +G
Sbjct:   186 SFIKD-ISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDG 244

Query:   116 NTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILE 175
              +PL+ AV      +A TM +         +         +++H A+   +  ++  IL 
Sbjct:   245 VSPLYLAVEAGQADLAKTMWQHSNNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILS 304

Query:   176 AKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL 235
                 LIN RDE  R  L + A+LG+++  C L D+    VY  D +G  P+H+A + G +
Sbjct:   305 EDASLINFRDE-GRTCLSFGASLGYYEGFCYLLDKALDSVYVSDDDGSFPIHMAVKYGYV 363

Query:   236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL---KQPEVEDLINSSDVDG 292
              IL+ +L   PD++E +D +N+N+LH+AA+NG  +V+ FIL   K    E LIN  D +G
Sbjct:   364 KILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANG 423

Query:   293 NTPLHLAAINNHFNIILVL 311
             NTPLHLA  N H  ++ +L
Sbjct:   424 NTPLHLATKNWHPKVVSML 442

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 84/296 (28%), Positives = 155/296 (52%)

Query:    29 NRILGTSQNGDTALHIAARFGH----EILVMEILKHQS-D-LVSVPNHKSETPMHVAARA 82
             N +   +  G+T LH+AAR G     EILV  I +  S D  ++  +   +T +H A + 
Sbjct:    97 NLLQNVNLMGETTLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGDTALHAALKG 156

Query:    83 GNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPI 142
              +   A   +    +  +  +FD    K ++E + PL+ AV     ++   M++    P 
Sbjct:   157 KHVEVAFCLV----SVKHDVSFD----KNNDEAS-PLYMAVEAGYHELVLKMLESSSSPS 207

Query:   143 RYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFK 202
                +      +  +++H+A+  ++  ++  +L     LI +R+E  R  L Y A++G ++
Sbjct:   208 ILASMF----SGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGCYE 263

Query:   203 -IACRLSDED---DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN 258
              I   L++ D    SL Y  D +G +P+H+A++ G + I++  L   PDS E ++N+ +N
Sbjct:   264 GIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQN 323

Query:   259 ILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
             I H+AA  G + VV ++LK  E + ++N  D++GNTPLHLA  + +  ++ +L  N
Sbjct:   324 IFHVAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLHLATKHRYPIVVNMLTWN 379

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 4.1e-23, P = 4.1e-23
 Identities = 90/323 (27%), Positives = 150/323 (46%)

Query:     5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ--- 61
             D  L  A R G+ + V+         +L  +      LH+AA  GH  +V  ++      
Sbjct:   116 DSVLHLAARWGHLELVKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFF 175

Query:    62 SDLVSVPNHKSETPMHVAARAGNFG---AAQ-IFMRPHGNGNNTGTFDDILRKRDEEGNT 117
             SD ++  + +   P  +  + GN     A +  +M    +  N       L   + EG +
Sbjct:   176 SDRLAEEDRERLNPYVLRDKYGNTALHLAIEGRYMEMAASLVNENQNASFLE--NNEGIS 233

Query:   118 PLHNAVRKCDGKMAFTMIK----KDPEPIRYNNKAK-QGPNNLTLLHSAIIKSQFVVMAK 172
              L+ AV   D  +   ++K     D E    N  +K +G  +L  +H A+      V+  
Sbjct:   234 SLYMAVEAGDVTLVKEILKTAGNNDLEGRNSNLDSKLEGRKHL--VHVALNARSIGVLDV 291

Query:   173 ILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN 232
             IL     L + RDE  R  L +AA++G +K  C L D     VY  D +G  P+H A++N
Sbjct:   292 ILNEYPSLEDERDEEGRTCLSFAASIGFYKGVCNLLDRSTKNVYVCDEDGSFPIHTAAEN 351

Query:   233 GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDG 292
             G + I++ +L   P S   ++   +N+LH+AA+ G  ++V  +++  + + L    DVDG
Sbjct:   352 GHIRIVKEILKRCPHSKHMLNKLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQDVDG 411

Query:   293 NTPLHLAAINNHFNIILVLARNM 315
             NTPLHLA +N  +  I  LA ++
Sbjct:   412 NTPLHLAVLNWRYRSIRTLASDV 434

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.9e-22, P = 7.9e-22
 Identities = 89/325 (27%), Positives = 148/325 (45%)

Query:     2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
             +T D  L  A+  G+ + V+E        +L  + +G T LH+AA  GH  +V   +   
Sbjct:   130 NTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALV 189

Query:    62 S-DLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF-----DDILRKRDEEG 115
             +     + N +SE  M+        G   ++    G              D     ++ G
Sbjct:   190 TFSSARLCNEESER-MNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYG 248

Query:   116 NTPLHNAVRKCDGKMAFTMIK----KDPEPIRYNNKAK-QGPNNLTLLHSAIIKSQFV-V 169
              + L  A+   D  +   ++K    KD +  + N ++K QG  +L   H A++      V
Sbjct:   249 VSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLA--HVALVTQSIAGV 306

Query:   170 MAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA 229
             +  IL+    L++ RD      L  AA +G+++  C L +     VY  D +G  P+H A
Sbjct:   307 LDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTA 366

Query:   230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSD 289
             ++ G  +I+E  +   P S   ++   +N+LH+AA+NG   +   ++   + E L    D
Sbjct:   367 AEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQD 426

Query:   290 VDGNTPLHLAAINNHFNIILVLARN 314
             VDGNTPLHLA +N HF  I  LAR+
Sbjct:   427 VDGNTPLHLAVMNWHFKSITWLARS 451

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 75/285 (26%), Positives = 140/285 (49%)

Query:    31 ILGTSQNGDTALHIAARFGHEILVMEIL-----------KHQSDLVS---VPNHKSETPM 76
             ++ ++      LH+AAR GH  +V +++           +   ++++   + +   +T +
Sbjct:   146 LMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILNPYLLKDINGDTAL 205

Query:    77 HVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIK 136
             ++A + G++    + +    N N   +F   L  +D  G +PL+ AV   D  +   M+ 
Sbjct:   206 NLALK-GHYTEVALCLV---NANRQASF---LACKD--GISPLYLAVEAKDASLVKAMLG 256

Query:   137 KDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA 196
              D  P R N    +G   L   H+A+      ++  IL     L++ RDE  R  L + A
Sbjct:   257 NDG-PQRKNLNL-EGRKYLA--HAALNSLSTDILDVILNEYPSLVDERDEEGRTCLSFGA 312

Query:   197 ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKN 256
             ++G+ K  C L +     V+  D +G  P+HLA + G++ +++ +    P S   ++ K 
Sbjct:   313 SIGYHKGVCNLLNRSRKGVFVCDDDGSYPIHLAVEKGRIKVVKEICKRCPYSKLLLNKKG 372

Query:   257 RNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
             +N+LH+AA++G   ++  +    ++  L N  DVDGNTPLHLA I
Sbjct:   373 QNLLHIAAESGKFRILRHLTAHEQINHLANEKDVDGNTPLHLATI 417

GO:0005739 "mitochondrion" evidence=ISM

UNIPROTKB|O15084 ANKRD28 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 84/299 (28%), Positives = 140/299 (46%)

Query:     8 LFRALRHGYTDKVREFARLN-GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
             L  ++ +G+TD V  ++ LN G  +    + G TALH  A  GHE  V  +L+H +  + 
Sbjct:   657 LMLSVLNGHTDCV--YSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCL- 713

Query:    67 VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
             + + +  TP+H++A  G+ G     ++      +  + D      D  G T LH A   C
Sbjct:   714 LRDSRGRTPIHLSAACGHIGVLGALLQ------SAASMDANPATADNHGYTALHWA---C 764

Query:   127 -DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAK-RDLINVR 184
              +G      +  + E  +     K   N  + LH A+I         +++     ++N  
Sbjct:   765 YNGHETCVELLLEQEVFQ-----KTEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNAT 819

Query:   185 DERNRNPLRYAAALGHFKIAC-RLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLH 243
             D + R PL  AA   H  + C +L    ++ V   D  G++PL +A++NGQ + +E L+ 
Sbjct:   820 DSKGRTPLHAAAFTDH--VECLQLLLSHNAQVNSVDSTGKTPLMMAAENGQTNTVEMLVS 877

Query:   244 SYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
             S    +   DN     LHLA   GH    + IL++    +LIN+++    TPLH+AA N
Sbjct:   878 SASAELTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARN 936

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 70/247 (28%), Positives = 124/247 (50%)

Query:    59 KHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP 118
             + + +L ++ +    T +H+A + G+   A   ++     N+  +F       +  G +P
Sbjct:   140 RERVNLYAMKDIDGNTALHLALKGGHLKTAACLVK----ANHLASF-----LANNHGVSP 190

Query:   119 LHNAVRKCDGKMAFTMIKKDPE-PIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAK 177
             L  A+    G +  T+++     P +  N A +     +L+H+A+      ++  IL   
Sbjct:   191 LFTAI--IAGSL--TLVEAMMYVPGQTCNLASKLEGRKSLVHAALKAKNSDILDVILSED 246

Query:   178 RDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSI 237
               L+N RDE  R  L  AA +G++K    L     S V++ D +G  P+H+A + G++ I
Sbjct:   247 PSLVNERDEEGRTCLSVAAYVGYYKGVVNLLHRSTSNVFECDDDGSYPIHMAVEKGRVKI 306

Query:   238 LENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF-ILKQPEV--EDLINSSDVDGNT 294
                LL   PDS   ++ + +NILH+AA++G     +  ++K  ++   DLI   DVDGNT
Sbjct:   307 FLKLLKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNT 366

Query:   295 PLHLAAI 301
             PLHLA +
Sbjct:   367 PLHLATL 373

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 5.9e-20, P = 5.9e-20
 Identities = 85/269 (31%), Positives = 120/269 (44%)

Query:    39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNG 98
             +T LH+AA+FGH  LV +I++ +  LVS  N    TP+H+AA  G+       +      
Sbjct:    38 NTVLHMAAKFGHRELVSKIIELRPSLVSSRNAYRNTPLHLAAILGDVNIVMQMLE----- 92

Query:    99 NNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLL 158
               TG   ++   R+   +TPLH A R  +   A  +I +  + I        G   L L 
Sbjct:    93 --TGL--EVCSARNINNHTPLHLACRS-NSIEAARLIAEKTQSI--------GLGELIL- 138

Query:   159 HSAIIKSQFVVMAKILEAKRDLIN-----VRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
               AI      ++  ILE   DL       V D      L +A   G F++   L   D  
Sbjct:   139 --AISSGSTSIVGTILERFPDLAREEAWVVEDGSQSTLLHHACDKGDFELTTILLGLDQG 196

Query:   214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
             L    + NG SPLHLA   G + ILE  L   P S   I      + HLAA+N + D  V
Sbjct:   197 LEEALNPNGLSPLHLAVLRGSVVILEEFLDKVPLSFSSITPSKETVFHLAARNKNMDAFV 256

Query:   274 FILKQPEVED--LINSSDVDGNTPLHLAA 300
             F+ +   +    L+  +D  GNT LH+AA
Sbjct:   257 FMAESLGINSQILLQQTDESGNTVLHIAA 285

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

MGI|MGI:2145661 Ankrd28 "ankyrin repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 80/298 (26%), Positives = 139/298 (46%)

Query:     8 LFRALRHGYTDKVREFARLN-GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
             L  ++ +G+TD V  ++ LN G  +    + G TALH  A  GHE  V  +L+H +  + 
Sbjct:   657 LMLSVLNGHTDCV--YSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCL- 713

Query:    67 VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
             + + +  TP+H++A  G+ G     ++   +  +      ++   D  G T LH A    
Sbjct:   714 LRDSRGRTPIHLSAACGHIGVLGALLQ---SATSVDANPAVV---DNHGYTALHWACYNG 767

Query:   127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAK-RDLINVRD 185
                    ++++D          K   N  + LH A+I         ++++    ++N  D
Sbjct:   768 HETCVELLLEQDVFQ-------KIDGNAFSPLHCAVINDNEGAAEMLIDSLGASIVNATD 820

Query:   186 ERNRNPLRYAAALGHFKIAC-RLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
              + R PL  AA   H  + C +L    ++ V   D  G++PL +A++NGQ + +E L+ S
Sbjct:   821 SKGRTPLHAAAFTDH--VECLQLLLSQNAQVNSADSTGKTPLMMAAENGQTNTVEMLVSS 878

Query:   245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
                 +   D      LHLA   GH    + IL++    +LIN+++    TPLH+AA N
Sbjct:   879 ASADLTLQDKSKNTALHLACGKGHETSALLILEKITDRNLINATNAALQTPLHVAARN 936

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.6e-19, P = 4.6e-19
 Identities = 91/331 (27%), Positives = 150/331 (45%)

Query:     2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKH- 60
             +T D  L  A + G+ + V+E        +   + +  T LH+A   GH  +V  ++   
Sbjct:    99 NTGDSILHIAAKWGHLELVKEIIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASV 158

Query:    61 QSDLVSVPNHKSE--TPMHVAARAGNFGAAQIFMRPHGNGNNTGTF-----DDILRKRDE 113
              S L S+   +SE   P  +    GN     ++    G      T       D     + 
Sbjct:   159 TSALASLSTEESEGLNPHVLKDEDGN---TALYYAIEGRYLEMATCLVNADKDAPFLGNN 215

Query:   114 EGNTPLHNAV---RKCDGKMAFTMIKK-----DPEPIRYNNKAK-QGPNNLTLLHSAIIK 164
             +G + L+ AV    K +  +   ++K      D E  ++N  +K QG  N  L H A+  
Sbjct:   216 KGISSLYEAVDAGNKFED-LVKAILKTTDDNVDREVRKFNLDSKLQG--NKHLAHVALKA 272

Query:   165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS 224
                 V+  IL+    L++ +DE  R  L Y A++G++K  C + +     VY  D +G  
Sbjct:   273 KSIGVLDVILDEYPSLMDEQDEDGRTCLSYGASIGYYKGLCNILNRSTKGVYVCDQDGSF 332

Query:   225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
             P+H A++N    I++  +   P S   ++   +NILH+AA+N  +     ++   + + L
Sbjct:   333 PIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKDTKHL 392

Query:   285 INSSDVDGNTPLHLAAINNHFNIILVLA-RN 314
                 DVDGNTPLHLA +N  F+ I  LA RN
Sbjct:   393 GVGQDVDGNTPLHLAVMNWDFDSITCLASRN 423

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.8 bits (236), Expect = 3e-24
 Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 5/130 (3%)

Query: 182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL 241
           N RDE  R PL  AA+ GH ++   L +     V   D +G++PLHLA++NG L I++ L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 242 LHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
           L    D +   D      LHLAA+NG+ DVV  +LK       +N+ D DG TPLHLAA 
Sbjct: 60  LEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHG---ADVNARDKDGRTPLHLAAK 115

Query: 302 NNHFNIILVL 311
           N H  ++ +L
Sbjct: 116 NGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 3/124 (2%)

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
           +  T LH A       V+  +LE   D +N +D   R PL  AA  GH +I   L ++  
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
            +  + D +G +PLHLA++NG L +++ LL  +   +   D   R  LHLAA+NGH +VV
Sbjct: 65  DVNAR-DKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKNGHLEVV 122

Query: 273 VFIL 276
             +L
Sbjct: 123 KLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 8/132 (6%)

Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVM 170
           RDE+G TPLH A      ++   +++   +    +N      +  T LH A       ++
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN------DGRTPLHLAAKNGHLEIV 56

Query: 171 AKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS 230
             +LE   D +N RD+    PL  AA  G+  +   L      +  + D +G++PLHLA+
Sbjct: 57  KLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAA 114

Query: 231 QNGQLSILENLL 242
           +NG L +++ LL
Sbjct: 115 KNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 226 LHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLI 285
           LHLA++NG L +++ LL    D            LHLAA+NG+ ++V  +L+       +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLLEH---GADV 54

Query: 286 NSSDVDGNTPLHLAAINNHFNIILVLARN 314
           N+ D DGNT LHLAA N +  I+ +L  +
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 17/138 (12%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +G T LH+AA  GH  +V  +L++ +D V+  ++   TP+H+AA+ G+    ++ +    
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE--- 61

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                      +  RD++GNTPLH A R  +  +   ++K   +    +       +  T
Sbjct: 62  -------KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK------DGRT 108

Query: 157 LLHSAIIKSQFVVMAKIL 174
            LH A       V+  +L
Sbjct: 109 PLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A  +G+ + V+     NG  +     +G T LH+AA+ GH  +V  +L+  +D V+ 
Sbjct: 11  LHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNA 68

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
            +    TP+H+AAR GN    ++ ++   + N           RD++G TPLH A +   
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA----------RDKDGRTPLHLAAKNGH 118

Query: 128 GKMA 131
            ++ 
Sbjct: 119 LEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 17/136 (12%)

Query: 69  NHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG 128
           +    TP+H+AA  G+    ++ +  +G   N          +D +G TPLH A +    
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLE-NGADVN---------AKDNDGRTPLHLAAKNGHL 53

Query: 129 KMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN 188
           ++   +++K  +    +       +  T LH A  ++  + + K+L      +N RD+  
Sbjct: 54  EIVKLLLEKGADVNARDK------DGNTPLHLA-ARNGNLDVVKLLLKHGADVNARDKDG 106

Query: 189 RNPLRYAAALGHFKIA 204
           R PL  AA  GH ++ 
Sbjct: 107 RTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            D   R  LHLAA NGH +VV  +L+       +N+ D DG TPLHLAA N H  I+ +L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 312 ARN 314
              
Sbjct: 60  LEK 62

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 42  LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
           LH+AA+ G+  LV  +L+  +D+       ++T +H+AAR GN    ++ +  HG   N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL---GDTDTALHLAARNGNLEIVKLLL-EHGADVNA 56

Query: 102 GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYN 145
                    +D++GNT LH A R  + ++   +++   +    +
Sbjct: 57  ---------KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 8  LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
          L  A ++G  + V+      G  +     + DTALH+AAR G+  +V  +L+H +D+ + 
Sbjct: 1  LHLAAKNGNLELVKLLLE-KGADV--NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 68 PNHKSETPMHVAARAGNFGAAQIFM 92
                T +H+AAR GN    ++ +
Sbjct: 58 DKDG-NTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 256 NRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            R  LH AA +G  ++V ++L++      IN +D DGNT LH+AA N +  ++ +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGV---DINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ 217
           LH A       ++  +LE      +V        L  AA  G+ +I   L +    +  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPD 247
            D +G + LHLA++NG L I++ LL    D
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 46/188 (24%), Positives = 69/188 (36%), Gaps = 14/188 (7%)

Query: 136 KKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVM---AKILEAKRDLINVRDERNRNPL 192
                 +   +     P++  L     +            +       +  RD   R PL
Sbjct: 18  LLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPL 77

Query: 193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLS-----ILENLLH--SY 245
             AA+ G  KI  +L     + V   D +G +PLHLA+ NG        + + LL   + 
Sbjct: 78  HSAASKGDDKI-VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD 136

Query: 246 PDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHF 305
            D     D      LH AA NG AD+V  +L+        NS +  G T L  AA N   
Sbjct: 137 LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRI 193

Query: 306 NIILVLAR 313
            ++ +L  
Sbjct: 194 ELVKLLLD 201

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D N  S L   +  G  ++LE LL +  D  +  D+K R  LH+AA  G+ D V+ +LK 
Sbjct: 522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH 580

Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                 ++  D +GNT L  A    H  I  +L
Sbjct: 581 ACN---VHIRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA 299
           LL   P  +   D      LHLAA+ G  ++V ++LK       +N  D DG T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGV---DLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
          G TALH AA  G   LV  +L+   D ++  +    T +H+AA  GN    ++ 
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 27/185 (14%)

Query: 153 NNLTLLHSA----IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAA--LGHFKIACR 206
           NN T LH         +    + K+L      +N  D     PL YA +     + I   
Sbjct: 67  NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEY 126

Query: 207 LSDEDDSLVYQHDCNGQSPLHLASQNGQ--LSILE---------------NLLHSYPDSI 249
           L D   + V   + +G++ LHL  ++ +  L IL+               N L SY   I
Sbjct: 127 LLDNG-ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPI 185

Query: 250 EFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL 309
              D      LH A  N + + V ++L   ++    N  +  G+TPLH+A +NN+  I  
Sbjct: 186 NIKDVYGFTPLHYAVYNNNPEFVKYLL---DLGANPNLVNKYGDTPLHIAILNNNKEIFK 242

Query: 310 VLARN 314
           +L  N
Sbjct: 243 LLLNN 247

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 16  YTDKVREFARLNGNRILGTSQNGDTALHIAARFG--HEILVMEILKHQSDLVSVPNHKSE 73
               VRE  R  G     T   G+T LH  A        LV+ +L      ++  N   +
Sbjct: 201 RARIVRELIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQ 258

Query: 74  TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
           TP+H AA   N  A +  +    + N              +GNTPL   VR  +G+    
Sbjct: 259 TPLHYAAVFNNPRACRRLIALGADIN----------AVSSDGNTPLSLMVRNNNGRAVRA 308

Query: 134 MIKKDPEP 141
            + K+P  
Sbjct: 309 ALAKNPSA 316

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 33/263 (12%)

Query: 53  LVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGT--------- 103
            + +I+K++ + +++   ++ TP+  A R+G+    ++F++   + N+  T         
Sbjct: 16  AIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA 75

Query: 104 ----FDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLH 159
                 DI++   + G       +   +  M  T++    +    + + K      T LH
Sbjct: 76  IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELK------TFLH 129

Query: 160 SAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHD 219
            AI K     +  + E   D +N+ D+    P+  A     F I  +L  E  +     D
Sbjct: 130 YAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDI-IKLLLEKGAYANVKD 187

Query: 220 CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN---ILHLAAQNGHADVVVFIL 276
            NG+SPLH A++ G  + ++ L+    D    I NK +N    LH A  +  + + + I 
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLI----DHGNHIMNKCKNGFTPLHNAIIHNRSAIELLIN 243

Query: 277 KQPEVEDLINSSDVDGNTPLHLA 299
                   IN  D+DG+TPLH A
Sbjct: 244 NAS-----INDQDIDGSTPLHHA 261

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 33/210 (15%)

Query: 40  TALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGN 99
           T LH A + G    +  + ++ +D V++ +     P+H+A +   F   ++ +       
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLE------ 178

Query: 100 NTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLH 159
             G + ++   +D  G +PLHNA    D      +I         N+   +  N  T LH
Sbjct: 179 -KGAYANV---KDNNGESPLHNAAEYGDYACIKLLIDHG------NHIMNKCKNGFTPLH 228

Query: 160 SAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH- 218
           +AII ++  +   I  A    IN +D     PL +A         C + D  D L+Y   
Sbjct: 229 NAIIHNRSAIELLINNAS---INDQDIDGSTPLHHA-----INPPCDI-DIIDILLYHKA 279

Query: 219 -----DCNGQSPLHLASQN-GQLSILENLL 242
                D  G++P+  A +   +  ++++++
Sbjct: 280 DISIKDNKGENPIDTAFKYINKDPVIKDII 309

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 8  LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
          L  A R+G  + V+     +G  +    ++G+TALH+AAR G+  +V  +L+H +D+
Sbjct: 32 LHLAARNGNLEIVKLLLE-HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
               G+TALH A     +  + E+L      V++P+  + +P+H A +  N     I + 
Sbjct: 164 DRHKGNTALHYATE-NKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE 222

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
              NG +T         RD+ GNTPLH +V  C     + ++K   E     N AK    
Sbjct: 223 ---NGASTDA-------RDKCGNTPLHISVGYC---KDYDILKLLLEHGVDVN-AKSYIL 268

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYA 195
            LT LHS+I   +   +  +LE   D IN  +     PL  A
Sbjct: 269 GLTALHSSIKSER--KLKLLLEYGAD-INSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 59/249 (23%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKS---ETPMHVAARAGNFGAAQI 90
              +G + + +A +F     +  ++KH +    +P+ K    E+ +H A   G+  A + 
Sbjct: 31  EIYDGISPIKLAMKFRDSEAIKLLMKHGA----IPDVKYPDIESELHDAVEEGDVKAVEE 86

Query: 91  FMRPHGNGNNTGTF-DDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAK 149
            +       + G F DD+  K   +G TPLH A       +   +I +  +P   N    
Sbjct: 87  LL-------DLGKFADDVFYK---DGMTPLHLATILKKLDIMKLLIARGADPDIPNT--- 133

Query: 150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSD 209
              +  + LH A++    +   ++L   +  +++ D                        
Sbjct: 134 ---DKFSPLHLAVM-MGDIKGIELLIDHKACLDIED------------------------ 165

Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
                     C G +PL +A   G ++I + LL S  +   F  N     L  A +N   
Sbjct: 166 ----------CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI 215

Query: 270 DVVVFILKQ 278
           D+V   +K+
Sbjct: 216 DIVRLFIKR 224

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 25/262 (9%)

Query: 51  EILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRK 110
           E+L+ E+L      V+  +    TP+H AA  GN     + +  +G   N    DD+   
Sbjct: 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLS-YGADVNIIALDDL--- 212

Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVM 170
                 + L  AV   +      +I         +N++    N+L+LL +  I+++ +  
Sbjct: 213 ------SVLECAVDSKNIDTIKAII---------DNRSNINKNDLSLLKA--IRNEDLET 255

Query: 171 AKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS 230
           + +L      +N  D+    PL +A+             E  + V   +  G++PL+L +
Sbjct: 256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMA 315

Query: 231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ-NGHADVVVFILKQPEVEDLINSSD 289
           +NG  +     L      +   D      LH A+  + + D+V+ +L   E+   +N+ D
Sbjct: 316 KNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL---ELGANVNARD 372

Query: 290 VDGNTPLHLAAINNHFNIILVL 311
               TP+H AA+ N+  II  L
Sbjct: 373 YCDKTPIHYAAVRNNVVIINTL 394

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 37 NGDTALHIAARFGHEILVMEILKHQSDL 64
          +G+T LH+AAR GH  +V  +L+  +D+
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
            R  L  AA  G  ++   L  E    + + D +G + LH+A++NG L +L+ LL
Sbjct: 1   GRTALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 36/156 (23%)

Query: 173 ILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY-QHDCNGQSPLHLASQ 231
           +L+AK D  ++ D + R PL  AA+ G+         ED  LV  +H CN    +H+   
Sbjct: 544 LLKAKLD-PDIGDSKGRTPLHIAASKGY---------EDCVLVLLKHACN----VHIRDA 589

Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILH--LAAQNGHA--DVVVFILKQPEVEDL--- 284
           NG  ++         ++I    +K   IL+   +  + HA  D++    K+ ++  +   
Sbjct: 590 NGNTALW--------NAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKEL 641

Query: 285 ------INSSDVDGNTPLHLAAINNHFNIILVLARN 314
                 ++S D  G T L +A   +H +++ +L  N
Sbjct: 642 LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN 677

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02792	631	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.52
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.37
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.34
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.83
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.74
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
PF13606	30	Ank_3: Ankyrin repeat	98.64
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.61
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.61
PF13606	30	Ank_3: Ankyrin repeat	98.59
KOG0522	560	consensus Ankyrin repeat protein [General function	98.59
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.55
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.53
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.51
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.43
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.32
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.27
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.18
KOG2384	223	consensus Major histocompatibility complex protein	98.11
KOG2384	223	consensus Major histocompatibility complex protein	98.08
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.03
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.98
KOG0511	516	consensus Ankyrin repeat protein [General function	97.96
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.94
KOG0511	516	consensus Ankyrin repeat protein [General function	97.84
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.7
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.65
KOG2505	591	consensus Ankyrin repeat protein [General function	95.53
KOG2505	591	consensus Ankyrin repeat protein [General function	94.81
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.36
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.14
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.93
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.34
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.19
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	83.43

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-43  Score=317.97  Aligned_cols=296  Identities=23%  Similarity=0.256  Sum_probs=250.5

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      +..|+.|+..|+.+.++.++...+..++..+..|.||||.|+..|+.++|++|++.|++. +..+..|.||||.|+..|+
T Consensus         2 ~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~   80 (434)
T PHA02874          2 SQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGA   80 (434)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC
Confidence            457899999999999999998888878888889999999999999999999999999874 4567789999999999999


Q ss_pred             hhHHHHhhccCCCCCCCC------c-------chhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCC
Q 048248           85 FGAAQIFMRPHGNGNNTG------T-------FDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG  151 (316)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~------~-------~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  151 (316)
                      .+++++|++.+.......      .       ....+..++..|.||||+|+..++.++++.|+..++++      +..+
T Consensus        81 ~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~------n~~d  154 (434)
T PHA02874         81 HDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV------NIED  154 (434)
T ss_pred             HHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC------CCcC
Confidence            999999998765432100      0       00023456889999999999999999999999988664      2356


Q ss_pred             CCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHh
Q 048248          152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ  231 (316)
Q Consensus       152 ~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  231 (316)
                      ..|.||||+|+..++.++++.|+..+. .++..|..|.||||+|+..|+.++++.|++.+.. ++.++..|+||||.|+.
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~-~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGA-YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAII  232 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHH
Confidence            689999999999999999999997764 5788999999999999999999999999977654 56688899999999999


Q ss_pred             cCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC-ChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcC-ChhHHH
Q 048248          232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG-HADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINN-HFNIIL  309 (316)
Q Consensus       232 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~-~~~~~~  309 (316)
                      .+. ++++.|+.  +..++.+|..|+||||+|+..+ +.+++++|+..+.   .++.+|.+|.||||+|++.+ +..+++
T Consensus       233 ~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ga---d~n~~d~~g~TpL~~A~~~~~~~~~ik  306 (434)
T PHA02874        233 HNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKA---DISIKDNKGENPIDTAFKYINKDPVIK  306 (434)
T ss_pred             CCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcC---CCCCCCCCCCCHHHHHHHhCCccHHHH
Confidence            876 56676763  3457899999999999999876 7899999998864   47888999999999999887 678888


Q ss_pred             HHhhcC
Q 048248          310 VLARNM  315 (316)
Q Consensus       310 ~Ll~~~  315 (316)
                      .|+.++
T Consensus       307 ~ll~~~  312 (434)
T PHA02874        307 DIIANA  312 (434)
T ss_pred             HHHHhc
Confidence            888754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.5e-43  Score=313.44  Aligned_cols=289  Identities=17%  Similarity=0.182  Sum_probs=201.2

Q ss_pred             ccHHHHHHHh--cCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 048248            4 VDHKLFRALR--HGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR   81 (316)
Q Consensus         4 ~~~~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   81 (316)
                      ...+||.++.  .++.+.++.++. .|.+++.++..|+||||+|++.|+.++|++|++.|++. +..|.+|+||||+|+.
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~  114 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLH-RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSG  114 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHH-CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHH
Confidence            3467777653  335566766654 45778888999999999999999999999999988764 5678889999999887


Q ss_pred             hCC--hhHHHHhhccCCCCCCCC---cc--------------------hhhhhccCCCCCcHHHHHHhcCC--hhHHHHH
Q 048248           82 AGN--FGAAQIFMRPHGNGNNTG---TF--------------------DDILRKRDEEGNTPLHNAVRKCD--GKMAFTM  134 (316)
Q Consensus        82 ~g~--~~~~~~l~~~~~~~~~~~---~~--------------------~~~~~~~~~~g~t~L~~a~~~~~--~~~~~~l  134 (316)
                      .+.  .+++++|+..++..+...   +.                    ...++.+|..|+||||+|+..++  .++++.|
T Consensus       115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~L  194 (446)
T PHA02946        115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWM  194 (446)
T ss_pred             cCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHH
Confidence            654  778888888776543210   00                    00123356777777777766544  3667777


Q ss_pred             HhhCCCcccccccccCCCCCchHHHHHHHhC--cHHHHHHHHHhccccccccccCCCcHHHHHHHhCc-HHHHHHhhcCC
Q 048248          135 IKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS--QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGH-FKIACRLSDED  211 (316)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~--~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~~~~ll~~~  211 (316)
                      +..+.++      +.++..|.||||+|+..+  +.++++.|+.  +.+++.+|..|.||||+|++.++ .++++.|+..+
T Consensus       195 l~~Gadi------n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g  266 (446)
T PHA02946        195 MKLGISP------SKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTS  266 (446)
T ss_pred             HHcCCCC------cccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCC
Confidence            7766554      234567778888888765  5666666653  35577888888888888888776 36666666554


Q ss_pred             CCc-------------------ccccC-CCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhH
Q 048248          212 DSL-------------------VYQHD-CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV  271 (316)
Q Consensus       212 ~~~-------------------~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  271 (316)
                      +..                   .+..+ ..|.||||+|+..|+.++|++|++++        ..|+||||+|+.+|+.++
T Consensus       267 ~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~--------~~~~t~L~~A~~~~~~~~  338 (446)
T PHA02946        267 NVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND--------IICEDAMYYAVLSEYETM  338 (446)
T ss_pred             CCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC--------CccccHHHHHHHhCHHHH
Confidence            321                   11111 24668888888888888888888653        246788888888888888


Q ss_pred             HHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 048248          272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       272 ~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                      +++|+..+..   ++.. .+|+||||+|++.++.++++.|+.+
T Consensus       339 v~~Ll~~ga~---~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        339 VDYLLFNHFS---VDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             HHHHHHCCCC---CCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            8888877643   4553 4788888888888888888888764

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.3e-42  Score=312.16  Aligned_cols=283  Identities=16%  Similarity=0.154  Sum_probs=209.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHh--CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARF--GHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      -+++.+...++.+.++.++.....      ..+.++||.++..  .+.++|++|++.|++. +..|.+|+||||+|+..|
T Consensus        11 ~sl~~~~~~~n~~~~~~~l~~~~~------~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g   83 (446)
T PHA02946         11 LSLYAKYNSKNLDVFRNMLQAIEP------SGNYHILHAYCGIKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKIN   83 (446)
T ss_pred             HHHHHHHccCcHHHHHHHHhccCC------CCCChHHHHHHHhcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcC
Confidence            367889999999999888854211      1247999988753  4678999999999874 567889999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCC--hhHHHHHHhhCCCcccccccccCCCCCchHHHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD--GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA  161 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A  161 (316)
                      +.+++++|++.+++.          +.+|.+|+||||+|+..+.  .++++.|+..++++..     ..+..|.|||| |
T Consensus        84 ~~eiv~lLL~~GAdi----------n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~-----~~d~~g~tpL~-a  147 (446)
T PHA02946         84 NNRIVAMLLTHGADP----------NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN-----SVDEEGCGPLL-A  147 (446)
T ss_pred             CHHHHHHHHHCcCCC----------CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc-----ccCCCCCcHHH-H
Confidence            999999999987653          3468899999999887653  6788899988876531     23556788887 5


Q ss_pred             HHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCc--HHHHHHhhcCCCCcccccCCCCCcHHHHHHhcC--CHhH
Q 048248          162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGH--FKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG--QLSI  237 (316)
Q Consensus       162 ~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~--~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~i  237 (316)
                      +..++.++++.|+..+ .+++.+|..|+||||+|+..++  .++++.|++. +.+++.+|.+|.||||+|+..|  +.++
T Consensus       148 a~~~~~~vv~~Ll~~g-ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~~~~~~i  225 (446)
T PHA02946        148 CTDPSERVFKKIMSIG-FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKPDHDGNTPLHIVCSKTVKNVDI  225 (446)
T ss_pred             HHCCChHHHHHHHhcc-ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCCcHHH
Confidence            5567778777777654 4577888888888888776544  4666666655 4455667888888888888775  6778


Q ss_pred             HHHHHhhCCCCccccccCCCcHHHHHHHcCC-hhHHHHHhcCcccc-----------------cccccCC-CCCCcHHHH
Q 048248          238 LENLLHSYPDSIEFIDNKNRNILHLAAQNGH-ADVVVFILKQPEVE-----------------DLINSSD-VDGNTPLHL  298 (316)
Q Consensus       238 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~~~~Ll~~~~~~-----------------~~~~~~d-~~g~t~L~~  298 (316)
                      +++|+.  +.+++.+|..|+||||+|+..++ .+++++|+..+...                 ..++..+ ..|.||||+
T Consensus       226 v~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~  303 (446)
T PHA02946        226 INLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKM  303 (446)
T ss_pred             HHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHH
Confidence            887774  35578888888888888888777 47777777764321                 0122222 357788888


Q ss_pred             HHHcCChhHHHHHhhcC
Q 048248          299 AAINNHFNIILVLARNM  315 (316)
Q Consensus       299 A~~~~~~~~~~~Ll~~~  315 (316)
                      |++.|+.++|++|++++
T Consensus       304 Aa~~g~~eivk~Ll~~~  320 (446)
T PHA02946        304 AVEVGSIRCVKYLLDND  320 (446)
T ss_pred             HHHcCCHHHHHHHHHCC
Confidence            88888888888888764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.9e-43  Score=331.46  Aligned_cols=300  Identities=22%  Similarity=0.249  Sum_probs=203.9

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHH-------------------------------------
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAA-------------------------------------   46 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~-------------------------------------   46 (316)
                      ..+|||+|+..|+.+.|+.++...+..+...+..|.||||+|+                                     
T Consensus        41 ~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  120 (682)
T PHA02876         41 PFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEA  120 (682)
T ss_pred             cchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHH
Confidence            4679999999999999988888877767777888999999666                                     


Q ss_pred             ---------------------------------HhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhc
Q 048248           47 ---------------------------------RFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR   93 (316)
Q Consensus        47 ---------------------------------~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~   93 (316)
                                                       ..|+.+++++|++.|++. +..|..|+||||+|+..|+.+++++|++
T Consensus       121 ~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadv-n~~d~~G~TpLh~Aa~~G~~~iv~~LL~  199 (682)
T PHA02876        121 CIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADV-NAKDIYCITPIHYAAERGNAKMVNLLLS  199 (682)
T ss_pred             HHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                                             346677888888888764 5677889999999999999999999998


Q ss_pred             cCCCCCCCC--cc-----------hh---------------------------------------hhhccCCCCCcHHHH
Q 048248           94 PHGNGNNTG--TF-----------DD---------------------------------------ILRKRDEEGNTPLHN  121 (316)
Q Consensus        94 ~~~~~~~~~--~~-----------~~---------------------------------------~~~~~~~~g~t~L~~  121 (316)
                      .+++.+...  +.           .+                                       .++..|..|.||||+
T Consensus       200 ~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~  279 (682)
T PHA02876        200 YGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH  279 (682)
T ss_pred             CCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            765432110  00           00                                       011234456666666


Q ss_pred             HHhcCCh-hHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC-cHHHHHHHHHhccccccccccCCCcHHHHHHHhC
Q 048248          122 AVRKCDG-KMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS-QFVVMAKILEAKRDLINVRDERNRNPLRYAAALG  199 (316)
Q Consensus       122 a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~-~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g  199 (316)
                      |+..++. ++++.|+..+.++      +.++..|.||||+|+..| ..+.++.|+..+ .+++.+|..|.||||+|+..+
T Consensus       280 Aa~~~~~~~iv~lLl~~gadi------n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g-adin~~d~~g~TpLh~A~~~~  352 (682)
T PHA02876        280 ASQAPSLSRLVPKLLERGADV------NAKNIKGETPLYLMAKNGYDTENIRTLIMLG-ADVNAADRLYITPLHQASTLD  352 (682)
T ss_pred             HHhCCCHHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC-CCCCCcccCCCcHHHHHHHhC
Confidence            6666654 3555555555443      234455666666666666 355555555443 345666666777777766654


Q ss_pred             c-HHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCC-hhHHHHHhc
Q 048248          200 H-FKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH-ADVVVFILK  277 (316)
Q Consensus       200 ~-~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~~~~Ll~  277 (316)
                      . .+++..|+ ..+.+++.+|..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..+. ..++++|++
T Consensus       353 ~~~~iv~lLl-~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga-d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~  430 (682)
T PHA02876        353 RNKDIVITLL-ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA-DIEALSQKIGTALHFALCGTNPYMSVKTLID  430 (682)
T ss_pred             CcHHHHHHHH-HcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CccccCCCCCchHHHHHHcCCHHHHHHHHHh
Confidence            3 34444443 4445556677777777777777777777777776543 356677777777777776554 345667776


Q ss_pred             CcccccccccCCCCCCcHHHHHHHcC-ChhHHHHHhhcCC
Q 048248          278 QPEVEDLINSSDVDGNTPLHLAAINN-HFNIILVLARNMS  316 (316)
Q Consensus       278 ~~~~~~~~~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~~~  316 (316)
                      .+.   .++.+|.+|+||||+|+..+ +.+++++|++.++
T Consensus       431 ~ga---din~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Ga  467 (682)
T PHA02876        431 RGA---NVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA  467 (682)
T ss_pred             CCC---CCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCC
Confidence            653   46788999999999999877 6899999998763

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-41  Score=312.01  Aligned_cols=283  Identities=20%  Similarity=0.247  Sum_probs=241.2

Q ss_pred             HHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhC---CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC-C
Q 048248            9 FRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFG---HEILVMEILKHQSDLVSVPNHKSETPMHVAARAG-N   84 (316)
Q Consensus         9 ~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g-~   84 (316)
                      +.++..++.+.++.++.. |.+++..+..|.||||+|+..+   +.+++++|++.|++. +..+..|+||||+|+..| .
T Consensus        19 ~~~~~~~~~~~v~~Ll~~-ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA-GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc-CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCc
Confidence            456788899999888765 5778999999999999999998   899999999999875 567789999999999999 5


Q ss_pred             hhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHH--hcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHH
Q 048248           85 FGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAV--RKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAI  162 (316)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~  162 (316)
                      .+++++|++.+++          ++..|..|.||||+|+  ..++.++++.|+..++++.      ..+..|.||||+|+
T Consensus        97 ~~iv~lLl~~ga~----------in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~------~~d~~g~tpL~~a~  160 (471)
T PHA03095         97 LDVIKLLIKAGAD----------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN------ALDLYGMTPLAVLL  160 (471)
T ss_pred             HHHHHHHHHcCCC----------CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHHHH
Confidence            9999999987654          3456889999999999  4457889999999887653      34667899999998


Q ss_pred             HhC--cHHHHHHHHHhccccccccccCCCcHHHHHHHh--CcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH--h
Q 048248          163 IKS--QFVVMAKILEAKRDLINVRDERNRNPLRYAAAL--GHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL--S  236 (316)
Q Consensus       163 ~~~--~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~--~  236 (316)
                      ..+  +.++++.|+..+.+ ++..|..|.||||+|+..  +..++++.|+..+ .+++.+|..|+||||+|+..|+.  .
T Consensus       161 ~~~~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~~~  238 (471)
T PHA03095        161 KSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCKRS  238 (471)
T ss_pred             HcCCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCchHH
Confidence            765  57888888877654 666799999999999975  5567787777665 55678999999999999999975  5


Q ss_pred             HHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          237 ILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       237 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      +++.|+..+ .+++.+|..|+||||+|+..|+.+++++|++.|.   .++.+|.+|+||||+|++.|+.++++.|++++
T Consensus       239 ~v~~ll~~g-~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga---d~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        239 LVLPLLIAG-ISINARNRYGQTPLHYAAVFNNPRACRRLIALGA---DINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             HHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            788888765 5579999999999999999999999999998864   46788999999999999999999999999864

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-42  Score=308.74  Aligned_cols=297  Identities=26%  Similarity=0.340  Sum_probs=252.5

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ...|||.|+.....+.++.++.. |.++.-.+.++.+|+|+|+..|..++++.|++.+.+ ++..|..|.||||+||..+
T Consensus        88 ~n~~l~~a~~~~~~~~i~~Lls~-gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~~  165 (929)
T KOG0510|consen   88 DNTPLHAAVEYNQGDKIQVLLSY-GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARKN  165 (929)
T ss_pred             cCchhHHHhhcchHHHHHHHHhc-CCCCChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhcC
Confidence            45789999999999999666654 567777888999999999999999999999999965 5678888999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII  163 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~  163 (316)
                      +.+..+.|+..++++          .+.|.+|++|+|.|++++..+..+.++.+.+.. +....+..++.+.||||.|+.
T Consensus       166 ~~E~~k~Li~~~a~~----------~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~-r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  166 KVEAKKELINKGADP----------CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYE-RQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             hHHHHHHHHhcCCCC----------CcccCcCCchHHHHHHhcchhhhhhhhccccch-hhcccccccCCCCcchhhhhh
Confidence            999888888876653          346889999999999999999999988844322 223334456678899999999


Q ss_pred             hCcHHHHHHHHHhcccc--------------ccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          164 KSQFVVMAKILEAKRDL--------------INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       164 ~~~~~~~~~ll~~~~~~--------------~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      .|+.+.++.+|+.+...              ++..|++|.||||+|+++|+.+.+..|+..+.+ ++.+++++.||||.|
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~A  313 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFA  313 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHH
Confidence            99999999999865422              345689999999999999999999988876665 567899999999999


Q ss_pred             HhcCCHhHHHHHHh-hCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccc--cCCCCCCcHHHHHHHcCChh
Q 048248          230 SQNGQLSILENLLH-SYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLIN--SSDVDGNTPLHLAAINNHFN  306 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~--~~d~~g~t~L~~A~~~~~~~  306 (316)
                      |++|+.++|+.|++ .+...++..|..|.||||.|+++||.++++.|+.+|+..  .+  ..|.+|+||||+|+..|+..
T Consensus       314 A~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~--~~~~e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  314 AIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF--LNMSEADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             HHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh--hcccccccCCchhhhHHHHhccHH
Confidence            99999999999998 555567888999999999999999999999999998753  33  34999999999999999999


Q ss_pred             HHHHHhhcCC
Q 048248          307 IILVLARNMS  316 (316)
Q Consensus       307 ~~~~Ll~~~~  316 (316)
                      +|.+|+.+|.
T Consensus       392 av~~Li~~Ga  401 (929)
T KOG0510|consen  392 AVQKLISHGA  401 (929)
T ss_pred             HHHHHHHcCC
Confidence            9999998764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.7e-41  Score=313.19  Aligned_cols=281  Identities=17%  Similarity=0.187  Sum_probs=220.2

Q ss_pred             hcCChHHHHHHHHhcCCccccc-cCCCChHHHHHHH--hCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh--hH
Q 048248           13 RHGYTDKVREFARLNGNRILGT-SQNGDTALHIAAR--FGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF--GA   87 (316)
Q Consensus        13 ~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~--~~   87 (316)
                      ..++.+.++.|+..+..+++.. +..|.||||+|+.  +++.++|++|++.|++ ++..|.+|.||||+|+..|+.  ++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            3578888877776653778887 8889999998864  3568999999998877 456788899999999999864  88


Q ss_pred             HHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHH-------------------------------------hcCChhH
Q 048248           88 AQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAV-------------------------------------RKCDGKM  130 (316)
Q Consensus        88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~-------------------------------------~~~~~~~  130 (316)
                      +++|++.+++.          +.+|..|+||||+|+                                     +.++.++
T Consensus       230 VklLLe~GADV----------N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~lei  299 (764)
T PHA02716        230 IKKIIELGGDM----------DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISV  299 (764)
T ss_pred             HHHHHHcCCCC----------CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHH
Confidence            99999876653          345788999998764                                     3355666


Q ss_pred             HHHHHhhCCCcccccccccCCCCCchHHHHHHH--hCcHHHHHHHHHhccccccccccCCCcHHHHHHHh----------
Q 048248          131 AFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII--KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAAL----------  198 (316)
Q Consensus       131 ~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~--~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~----------  198 (316)
                      ++.|++.++++      +.++..|.||||+|+.  .++.++++.|++.+ ++++.+|..|+||||+|+..          
T Consensus       300 VklLLe~GAdI------N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G-ADIN~kD~~G~TPLH~A~~~lav~~~ld~~  372 (764)
T PHA02716        300 VYSFLQPGVKL------HYKDSAGRTCLHQYILRHNISTDIIKLLHEYG-NDLNEPDNIGNTVLHTYLSMLSVVNILDPE  372 (764)
T ss_pred             HHHHHhCCCce------eccCCCCCCHHHHHHHHhCCCchHHHHHHHcC-CCCccCCCCCCCHHHHHHHhhhhhcccccc
Confidence            77777766543      3457789999999864  45788999888765 56899999999999998752          


Q ss_pred             ----CcHHHHHHhhcCCCCcccccCCCCCcHHHH----HHhcCCHhHHHHHHhhCCC-----------------------
Q 048248          199 ----GHFKIACRLSDEDDSLVYQHDCNGQSPLHL----ASQNGQLSILENLLHSYPD-----------------------  247 (316)
Q Consensus       199 ----g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~----A~~~g~~~iv~~Ll~~~~~-----------------------  247 (316)
                          ++.++++.|++.+ ++++.+|..|+||||.    |...++.+++++|++.+..                       
T Consensus       373 ~~~~~~~eVVklLL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lh  451 (764)
T PHA02716        373 TDNDIRLDVIQCLISLG-ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIH  451 (764)
T ss_pred             ccccChHHHHHHHHHCC-CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHH
Confidence                5788999898764 5677899999999994    2235788999988874210                       


Q ss_pred             -------------------------------------CccccccCCCcHHHHHHHcCChh-----HHHHHhcCccccccc
Q 048248          248 -------------------------------------SIEFIDNKNRNILHLAAQNGHAD-----VVVFILKQPEVEDLI  285 (316)
Q Consensus       248 -------------------------------------~~~~~d~~g~tpLh~A~~~g~~~-----~~~~Ll~~~~~~~~~  285 (316)
                                                           .++.+|..|+||||+|+..|+.+     ++++|++.|.   .+
T Consensus       452 h~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GA---DI  528 (764)
T PHA02716        452 HIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQY---NI  528 (764)
T ss_pred             HHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCC---CC
Confidence                                                 12334778999999999998874     4599998864   47


Q ss_pred             ccCCCCCCcHHHHHHHcCCh-----hHHHHHhhcC
Q 048248          286 NSSDVDGNTPLHLAAINNHF-----NIILVLARNM  315 (316)
Q Consensus       286 ~~~d~~g~t~L~~A~~~~~~-----~~~~~Ll~~~  315 (316)
                      +.+|.+|+||||+|+++|+.     ++++.|++++
T Consensus       529 N~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~g  563 (764)
T PHA02716        529 NIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKR  563 (764)
T ss_pred             cccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcC
Confidence            88999999999999999987     9999999876

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.8e-41  Score=306.58  Aligned_cols=278  Identities=19%  Similarity=0.241  Sum_probs=241.8

Q ss_pred             CChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHH-----HHHhCChhHHH
Q 048248           15 GYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV-----AARAGNFGAAQ   89 (316)
Q Consensus        15 g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~-----A~~~g~~~~~~   89 (316)
                      ...+.++.++.. +...+..+..+.||||+|++.++.++|++|++.|++. ...+..|.||||+     |+..++.++++
T Consensus        13 ~~~~~~~~~~~~-~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~-~~~~~~~~t~L~~~~~~~a~~~~~~~iv~   90 (480)
T PHA03100         13 IKVKNIKYIIME-DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADI-NSSTKNNSTPLHYLSNIKYNLTDVKEIVK   90 (480)
T ss_pred             HHHHHHHHHHhc-CccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCC-CCccccCcCHHHHHHHHHHHhhchHHHHH
Confidence            344566666644 4556667889999999999999999999999998874 4567789999999     99999999999


Q ss_pred             HhhccCCCCCCCCcchhhhhccCCCCCcHHHHHH--hcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC--
Q 048248           90 IFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAV--RKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS--  165 (316)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~--  165 (316)
                      +|++.++..          +..|..|.||||+|+  ..++.++++.|++.+++.      ...+..|.||||+|+..+  
T Consensus        91 ~Ll~~ga~i----------~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~  154 (480)
T PHA03100         91 LLLEYGANV----------NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV------NIKNSDGENLLHLYLESNKI  154 (480)
T ss_pred             HHHHCCCCC----------CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC------CccCCCCCcHHHHHHHcCCC
Confidence            999876542          446889999999999  999999999999988664      235668899999999999  


Q ss_pred             cHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCC------CcHHHHHHhcCC--HhH
Q 048248          166 QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNG------QSPLHLASQNGQ--LSI  237 (316)
Q Consensus       166 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g------~tpLh~A~~~g~--~~i  237 (316)
                      +.++++.|+..+. +++.+|..|.||||+|+..|+.++++.|++.+.. ++..+..|      .||||.|+..|+  .++
T Consensus       155 ~~~iv~~Ll~~g~-din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~i  232 (480)
T PHA03100        155 DLKILKLLIDKGV-DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEV  232 (480)
T ss_pred             hHHHHHHHHHCCC-CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHH
Confidence            9999999988765 4788999999999999999999999999977654 55677778      899999999999  999


Q ss_pred             HHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          238 LENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       238 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      +++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+.   .++.+|..|.||||+|+..++.+++++|+++++
T Consensus       233 v~~Ll~~g-~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga---d~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        233 VNYLLSYG-VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA---NPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP  307 (480)
T ss_pred             HHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence            99999875 4578999999999999999999999999999875   478889999999999999999999999998764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.1e-41  Score=299.15  Aligned_cols=284  Identities=24%  Similarity=0.315  Sum_probs=244.4

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ...|+|.|+..|+.+.++.++..+ .+++..+..|.||||+||..++.+..+.|++.+++. ...|.+|.+|+|.|+.+|
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~-~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~  198 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYG-ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSG  198 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhc-CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhc
Confidence            456999999999999998888765 889999999999999999999999888888888875 557899999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccc---------cccccCCCCC
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY---------NNKAKQGPNN  154 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~---------~~~~~~~~~~  154 (316)
                      ..++.++++..++..-     ...++.-+.+|.||||.|+..|+.++++.+++.+......         .-.+..|.+|
T Consensus       199 s~e~mEi~l~~~g~~r-----~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg  273 (929)
T KOG0510|consen  199 SKECMEIFLPEHGYER-----QTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDG  273 (929)
T ss_pred             chhhhhhhhccccchh-----hcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccC
Confidence            9999999998543311     1135556889999999999999999999999987644211         1224568899


Q ss_pred             chHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhc-CCCCcccccCCCCCcHHHHHHhcC
Q 048248          155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSD-EDDSLVYQHDCNGQSPLHLASQNG  233 (316)
Q Consensus       155 ~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~-~~~~~~~~~d~~g~tpLh~A~~~g  233 (316)
                      .||||+|++.|+.+.+..|+..+. .++.++.++.||||+|+..|....++.|++ .+-.+.+..|-.|+||||+|+++|
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~Ga-~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFGA-SINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcCC-cccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence            999999999999999999887765 489999999999999999999999999999 566677888899999999999999


Q ss_pred             CHhHHHHHHhhCCCCcc--ccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHH
Q 048248          234 QLSILENLLHSYPDSIE--FIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHL  298 (316)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~--~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~  298 (316)
                      |..+++.|++++....+  ..|.+|.||||+|+.+|+..++++|+..|..   +..+|+.|.|++++
T Consensus       353 H~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~---I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  353 HDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGAD---IGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCc---eeeccccccccccc
Confidence            99999999998766543  5699999999999999999999999999753   56678889998884

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-39  Score=307.47  Aligned_cols=294  Identities=18%  Similarity=0.196  Sum_probs=214.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF   85 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~   85 (316)
                      .+++.++..|+.+.++.|+ ..|.+++..+..|+||||+|++.|+.++|++|++.|++. +..+.+|.||||+|+..|+.
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll-~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~  224 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLL-EGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNI  224 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCH
Confidence            4566666667776664444 334566666667777777777777777777777766553 33445566666666666665


Q ss_pred             hHHHHhhccCCC-----------------------------CCCC---C-----------cchh----------hhhccC
Q 048248           86 GAAQIFMRPHGN-----------------------------GNNT---G-----------TFDD----------ILRKRD  112 (316)
Q Consensus        86 ~~~~~l~~~~~~-----------------------------~~~~---~-----------~~~~----------~~~~~~  112 (316)
                      ++++.+++....                             .+..   +           ....          .+...|
T Consensus       225 ~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d  304 (682)
T PHA02876        225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN  304 (682)
T ss_pred             HHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC
Confidence            555554432211                             0000   0           0000          123468


Q ss_pred             CCCCcHHHHHHhcC-ChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC-cHHHHHHHHHhccccccccccCCCc
Q 048248          113 EEGNTPLHNAVRKC-DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS-QFVVMAKILEAKRDLINVRDERNRN  190 (316)
Q Consensus       113 ~~g~t~L~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~-~~~~~~~ll~~~~~~~~~~d~~g~t  190 (316)
                      ..|.||||+|+..+ +.++++.|+..+.++      +..+..|.||||+|+..+ +.++++.|+. .+.+++.+|..|.|
T Consensus       305 ~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi------n~~d~~g~TpLh~A~~~~~~~~iv~lLl~-~gadin~~d~~G~T  377 (682)
T PHA02876        305 IKGETPLYLMAKNGYDTENIRTLIMLGADV------NAADRLYITPLHQASTLDRNKDIVITLLE-LGANVNARDYCDKT  377 (682)
T ss_pred             CCCCCHHHHHHHhCCCHHHHHHHHHcCCCC------CCcccCCCcHHHHHHHhCCcHHHHHHHHH-cCCCCccCCCCCCC
Confidence            89999999999998 588999999887664      335668899999999865 4555555554 45668999999999


Q ss_pred             HHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC-HhHHHHHHhhCCCCccccccCCCcHHHHHHHcC-C
Q 048248          191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ-LSILENLLHSYPDSIEFIDNKNRNILHLAAQNG-H  268 (316)
Q Consensus       191 pLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~  268 (316)
                      |||+|+..|+.++++.|++.++ +++..+..|.||||+|+..++ ..++++|++.+ .+++.+|..|+||||+|+..| +
T Consensus       378 pLh~Aa~~~~~~iv~~Ll~~ga-d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~~~~  455 (682)
T PHA02876        378 PIHYAAVRNNVVIINTLLDYGA-DIEALSQKIGTALHFALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKKNCK  455 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCC-CccccCCCCCchHHHHHHcCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHhCCc
Confidence            9999999999999999997665 456788899999999997765 56788888765 557999999999999999977 6


Q ss_pred             hhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       269 ~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      .+++++|++.|.   .++.+|..|.|||++|+..+  +++++|+..+
T Consensus       456 ~~iv~lLl~~Ga---d~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~  497 (682)
T PHA02876        456 LDVIEMLLDNGA---DVNAINIQNQYPLLIALEYH--GIVNILLHYG  497 (682)
T ss_pred             HHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHhC--CHHHHHHHCC
Confidence            899999999874   47788999999999999765  5788887654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-38  Score=286.86  Aligned_cols=283  Identities=19%  Similarity=0.246  Sum_probs=231.9

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCc-------------------
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL-------------------   64 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~-------------------   64 (316)
                      ..+|||.|+..|+.+.++.|+.. |.+++..+..|.||||+|+..|+.+++++|++.+++.                   
T Consensus        35 ~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         35 TTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            46899999999999999877754 5678888899999999999999999999999876542                   


Q ss_pred             ---cccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCc
Q 048248           65 ---VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEP  141 (316)
Q Consensus        65 ---~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~  141 (316)
                         ++..+..|.||||+|+..|+.+++++|++.+.+.          +.+|..|.||||+|+..++.++++.|+..+...
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~----------n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~  183 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV----------NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA  183 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC----------CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC
Confidence               3346778999999999999999999999876543          346889999999999999999999999987654


Q ss_pred             ccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCC
Q 048248          142 IRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN  221 (316)
Q Consensus       142 ~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~  221 (316)
                            ...+..|.||||+|+..|+.++++.|+..+. .++.++..|.||||+|+..+. +.+..|+.  +..++.+|.+
T Consensus       184 ------n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~-~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~  253 (434)
T PHA02874        184 ------NVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDID  253 (434)
T ss_pred             ------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCC
Confidence                  2346678999999999999999999998765 478889999999999999765 45555553  4556788999


Q ss_pred             CCcHHHHHHhcC-CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC-ChhHHHHHhcCcccccccccCCCC-CCcHHHH
Q 048248          222 GQSPLHLASQNG-QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG-HADVVVFILKQPEVEDLINSSDVD-GNTPLHL  298 (316)
Q Consensus       222 g~tpLh~A~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~~~~Ll~~~~~~~~~~~~d~~-g~t~L~~  298 (316)
                      |+||||+|+..+ +.+++++|++.+. +++.+|..|.||||+|+.++ +.++++.|+.....   ++..+.. +.+++..
T Consensus       254 G~TpLh~A~~~~~~~~iv~~Ll~~ga-d~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~---~~~~~~~~~~~~~~~  329 (434)
T PHA02874        254 GSTPLHHAINPPCDIDIIDILLYHKA-DISIKDNKGENPIDTAFKYINKDPVIKDIIANAVL---IKEADKLKDSDFLEH  329 (434)
T ss_pred             CCCHHHHHHhcCCcHHHHHHHHHCcC-CCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCc---hhhccccchhHHHHH
Confidence            999999999875 8899999998764 47999999999999999987 67888988877543   2222332 3566777


Q ss_pred             HHHcCChhHHHHH
Q 048248          299 AAINNHFNIILVL  311 (316)
Q Consensus       299 A~~~~~~~~~~~L  311 (316)
                      +...++..+-.++
T Consensus       330 ~~i~~~~~~~~~~  342 (434)
T PHA02874        330 IEIKDNKEFSDFI  342 (434)
T ss_pred             HHHhccchHHHHH
Confidence            7776666555444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.7e-38  Score=291.15  Aligned_cols=293  Identities=15%  Similarity=0.087  Sum_probs=217.9

Q ss_pred             ccHHHHHHHhc--CChHHHHHHHHhcCCccccccCCCChHHHHHHHhCC--HHHHHHHHhcCCCccccCCCCCCcHHHHH
Q 048248            4 VDHKLFRALRH--GYTDKVREFARLNGNRILGTSQNGDTALHIAARFGH--EILVMEILKHQSDLVSVPNHKSETPMHVA   79 (316)
Q Consensus         4 ~~~~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   79 (316)
                      ..+|||.|+..  ++.+.++.|++ .|.+++..+..|.||||+|++.|+  .++|++|++.|++ ++.++..|+||||+|
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe-~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~A  254 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCN-NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSPIMTY  254 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence            56799987644  56788866665 467899999999999999999995  5899999999987 466888999999986


Q ss_pred             HH---hCChhHHHHhhccCCCCCCC---------------C--c-------chhhhhccCCCCCcHHHHHHhc--CChhH
Q 048248           80 AR---AGNFGAAQIFMRPHGNGNNT---------------G--T-------FDDILRKRDEEGNTPLHNAVRK--CDGKM  130 (316)
Q Consensus        80 ~~---~g~~~~~~~l~~~~~~~~~~---------------~--~-------~~~~~~~~~~~g~t~L~~a~~~--~~~~~  130 (316)
                      +.   .++.++++.+++........               +  .       .+..++.+|..|+||||+|+..  ++.++
T Consensus       255 i~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eI  334 (764)
T PHA02716        255 IINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDI  334 (764)
T ss_pred             HHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchH
Confidence            42   33444444443321110000               0  0       0002345789999999998754  56789


Q ss_pred             HHHHHhhCCCcccccccccCCCCCchHHHHHHH--------------hCcHHHHHHHHHhccccccccccCCCcHHHHH-
Q 048248          131 AFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII--------------KSQFVVMAKILEAKRDLINVRDERNRNPLRYA-  195 (316)
Q Consensus       131 ~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~--------------~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A-  195 (316)
                      +++|++.|+++      +.++..|.||||+|+.              .++.++++.|+..+ ++++.+|..|.||||.+ 
T Consensus       335 VklLLe~GADI------N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~G~TPLh~y~  407 (764)
T PHA02716        335 IKLLHEYGNDL------NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCLGYTPLTSYI  407 (764)
T ss_pred             HHHHHHcCCCC------ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC-CCCCCcCCCCCChHHHHH
Confidence            99999988664      3456789999999875              36789999988765 56899999999999942 


Q ss_pred             ---HHhCcHHHHHHhhcCCCC-----------------------------------------------------------
Q 048248          196 ---AALGHFKIACRLSDEDDS-----------------------------------------------------------  213 (316)
Q Consensus       196 ---~~~g~~~~~~~ll~~~~~-----------------------------------------------------------  213 (316)
                         ...++.++++.|+..+..                                                           
T Consensus       408 ~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~  487 (764)
T PHA02716        408 CTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIER  487 (764)
T ss_pred             HHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhh
Confidence               223556777776653210                                                           


Q ss_pred             -cccccCCCCCcHHHHHHhcCCHh-----HHHHHHhhCCCCccccccCCCcHHHHHHHcCCh-----hHHHHHhcCcccc
Q 048248          214 -LVYQHDCNGQSPLHLASQNGQLS-----ILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA-----DVVVFILKQPEVE  282 (316)
Q Consensus       214 -~~~~~d~~g~tpLh~A~~~g~~~-----iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~-----~~~~~Ll~~~~~~  282 (316)
                       ..+..|..|+||||+|+..|+.+     ++++|++.+ ++++.+|..|+||||+|+++|+.     ++++.|++.++..
T Consensus       488 ~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~G-ADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~  566 (764)
T PHA02716        488 YNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQ-YNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNV  566 (764)
T ss_pred             ccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCC-CCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCc
Confidence             11334678999999999998874     459999775 55899999999999999999977     9999999876532


Q ss_pred             cccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          283 DLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       283 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                               +.+.|++|...++.+++.+|..++
T Consensus       567 ---------~~~~l~~~~~~~~~~~~~ll~~~~  590 (764)
T PHA02716        567 ---------DIVIIFLDKCYANGKFPSLLLSED  590 (764)
T ss_pred             ---------chHHHHHHhhhhhhHHHHHHHHcc
Confidence                     334689999999999999887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-38  Score=287.88  Aligned_cols=279  Identities=18%  Similarity=0.164  Sum_probs=194.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF   85 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~   85 (316)
                      .|||.|+..|+.+.++.|+.. |.+++.++..|+||||+||..|+.+++++|+..+.....   ..+.+|++.|+..++.
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNV  114 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCH
Confidence            356666666666666555543 345555666666666666666666666666654432211   3455666666666666


Q ss_pred             hHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhc--CChhHHHHHHhhCCCcccccccccCCCC-CchHHHHHH
Q 048248           86 GAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK--CDGKMAFTMIKKDPEPIRYNNKAKQGPN-NLTLLHSAI  162 (316)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~t~lh~A~  162 (316)
                      +++++|+..+.........            ..+......  ...++++.|+..++++      +..+.. |.||||+|+
T Consensus       115 ei~~~Ll~~~~~~~~~~~~------------~~~~~~~~~~~~~~~iv~~Ll~~gadi------n~~~~~~g~tpLh~A~  176 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDL------------VYIDKKSKDDIIEAEITKLLLSYGADI------NMKDRHKGNTALHYAT  176 (477)
T ss_pred             HHHHHHHhCcccCcccCcH------------HHHhhccchhhHHHHHHHHHHHcCCCC------CccCCCCCCCHHHHHH
Confidence            6666665432211100000            000000000  1123666666666544      234445 899999999


Q ss_pred             HhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc-CCHhHHHHH
Q 048248          163 IKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN-GQLSILENL  241 (316)
Q Consensus       163 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~-g~~~iv~~L  241 (316)
                      ..|+.++++.|+..+. +++.+|..|.||||+|+..|+.++++.|+..+ .+++.+|..|.||||+|+.. ++.+++++|
T Consensus       177 ~~~~~~iv~~Ll~~ga-d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~in~~d~~g~TpLh~A~~~~~~~~iv~~L  254 (477)
T PHA02878        177 ENKDQRLTELLLSYGA-NVNIPDKTNNSPLHHAVKHYNKPIVHILLENG-ASTDARDKCGNTPLHISVGYCKDYDILKLL  254 (477)
T ss_pred             hCCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhcCCHHHHHHH
Confidence            9999999999998764 58999999999999999999999999999765 45677899999999999975 799999999


Q ss_pred             HhhCCCCcccccc-CCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcC-ChhHHHHHhhc
Q 048248          242 LHSYPDSIEFIDN-KNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINN-HFNIILVLARN  314 (316)
Q Consensus       242 l~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~  314 (316)
                      ++.+. +++.++. .|.||||+|  .++.+++++|++.+.   .++..|.+|.||||+|+..+ +.+++++|+.+
T Consensus       255 l~~ga-dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~ga---din~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        255 LEHGV-DVNAKSYILGLTALHSS--IKSERKLKLLLEYGA---DINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             HHcCC-CCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            98765 4677775 799999999  577899999999874   47888999999999999864 46788887754

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-38  Score=263.64  Aligned_cols=231  Identities=18%  Similarity=0.160  Sum_probs=173.7

Q ss_pred             cCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhc
Q 048248           14 HGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR   93 (316)
Q Consensus        14 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~   93 (316)
                      +++.+.++.|+.. +.  +..|..|+||||+|+..|+.+++++|++.++... .  .+|+||||+|+..|+.+++++|+.
T Consensus         9 ~~~~~~~~~Lis~-~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-~--~d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSK-DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKN-L--LENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhC-CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-C--CCCCCHHHHHHHCCCHHHHHHHHH
Confidence            4555666555443 33  3567889999999999999999999998886532 2  347899999999999999999987


Q ss_pred             cCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCC-chHHHHHHHhCcHHHHHH
Q 048248           94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNN-LTLLHSAIIKSQFVVMAK  172 (316)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~t~lh~A~~~~~~~~~~~  172 (316)
                      .+..          +..+|..|+||||+|+..++.++++.|+..+++..      .++..| .||||+|+..|+.+++++
T Consensus        83 ~Gad----------vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin------~~~~~g~~TpL~~Aa~~g~~eivk~  146 (284)
T PHA02791         83 SGMD----------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM------FYGKTGWKTSFYHAVMLNDVSIVSY  146 (284)
T ss_pred             CCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC------ccCCCCCcHHHHHHHHcCCHHHHHH
Confidence            6543          33467888899999998888888888888876542      233345 488898888888888888


Q ss_pred             HHHhccccccccc-cCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcH-HHHHHhcCCHhHHHHHHhhCCCCcc
Q 048248          173 ILEAKRDLINVRD-ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSP-LHLASQNGQLSILENLLHSYPDSIE  250 (316)
Q Consensus       173 ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~iv~~Ll~~~~~~~~  250 (316)
                      |+..++..   .| ..|.||||+|++.|+.++++.|++.++ +++.+|..|.|| ||+|+..|+.++|++|++.+ ++++
T Consensus       147 LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA-d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G-a~in  221 (284)
T PHA02791        147 FLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD-INIY  221 (284)
T ss_pred             HHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCc
Confidence            88765432   23 357888888888888888888887654 456677788876 88888888888888888765 4467


Q ss_pred             ccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          251 FIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       251 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      .+|. +.+||      |+.|++++||+.
T Consensus       222 ~~~~-~~~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        222 SVNL-ENVLL------DDAEIAKMIIEK  242 (284)
T ss_pred             cCcc-cCccC------CCHHHHHHHHHh
Confidence            7777 44666      788888888865

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=286.13  Aligned_cols=257  Identities=21%  Similarity=0.272  Sum_probs=229.1

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHH-----HHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHH
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHI-----AARFGHEILVMEILKHQSDLVSVPNHKSETPMHV   78 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~-----A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   78 (316)
                      ..+|||.|+..|+.+.++.++.. |.+++..+..|.||||+     |+..++.+++++|++.++.. +..+..|.||||+
T Consensus        35 ~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~  112 (480)
T PHA03100         35 PVLPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLY  112 (480)
T ss_pred             cchhhhhhhccCCHHHHHHHHHc-CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhH
Confidence            46799999999999999888865 56788888999999999     99999999999999999886 6788899999999


Q ss_pred             HH--HhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcC--ChhHHHHHHhhCCCcccccccccCCCCC
Q 048248           79 AA--RAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC--DGKMAFTMIKKDPEPIRYNNKAKQGPNN  154 (316)
Q Consensus        79 A~--~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~  154 (316)
                      |+  ..|+.+++++|++.+..          +...+..|.||||+|+..+  +.++++.|++.++++.      ..+..|
T Consensus       113 A~~~~~~~~~iv~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din------~~d~~g  176 (480)
T PHA03100        113 AISKKSNSYSIVEYLLDNGAN----------VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN------AKNRYG  176 (480)
T ss_pred             HHhcccChHHHHHHHHHcCCC----------CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc------cccCCC
Confidence            99  99999999999987654          3346889999999999999  9999999999987652      345578


Q ss_pred             chHHHHHHHhCcHHHHHHHHHhccccccccccCC------CcHHHHHHHhCc--HHHHHHhhcCCCCcccccCCCCCcHH
Q 048248          155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN------RNPLRYAAALGH--FKIACRLSDEDDSLVYQHDCNGQSPL  226 (316)
Q Consensus       155 ~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g------~tpLh~A~~~g~--~~~~~~ll~~~~~~~~~~d~~g~tpL  226 (316)
                      .||||+|+..|+.++++.|+..+. +++..+..|      .||||+|+..|+  .++++.|++.+ .+++.+|..|.|||
T Consensus       177 ~tpL~~A~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL  254 (480)
T PHA03100        177 YTPLHIAVEKGNIDVIKFLLDNGA-DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPL  254 (480)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCC-CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHH
Confidence            999999999999999999998765 478888888      999999999999  99999999775 45677899999999


Q ss_pred             HHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCccc
Q 048248          227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV  281 (316)
Q Consensus       227 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~  281 (316)
                      |+|+..|+.+++++|++.+. +++.+|..|.||||+|+..++.+++++|++.+..
T Consensus       255 ~~A~~~~~~~iv~~Ll~~ga-d~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        255 HYAVYNNNPEFVKYLLDLGA-NPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             HHHHHcCCHHHHHHHHHcCC-CCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            99999999999999998876 6799999999999999999999999999998764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-37  Score=281.13  Aligned_cols=257  Identities=18%  Similarity=0.171  Sum_probs=217.3

Q ss_pred             ccHHHHHHHhcC---ChHHHHHHHHhcCCccccccCCCChHHHHHHHhC-CHHHHHHHHhcCCCccccCCCCCCcHHHHH
Q 048248            4 VDHKLFRALRHG---YTDKVREFARLNGNRILGTSQNGDTALHIAARFG-HEILVMEILKHQSDLVSVPNHKSETPMHVA   79 (316)
Q Consensus         4 ~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   79 (316)
                      ..+|||.|+..|   +.+.++.++. .|.+++..+..|+||||+|+..| +.+++++|++.+++. +..+..|+||||+|
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~-~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a  124 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLE-AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVY  124 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            468999999999   8888866664 56789999999999999999999 599999999999874 56788999999999


Q ss_pred             H--HhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcC--ChhHHHHHHhhCCCcccccccccCCCCCc
Q 048248           80 A--RAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC--DGKMAFTMIKKDPEPIRYNNKAKQGPNNL  155 (316)
Q Consensus        80 ~--~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  155 (316)
                      +  ..++.+++++|++.+++.          ...|..|.||||+|+..+  +.++++.|+..+++...      .+..|.
T Consensus       125 ~~~~~~~~~iv~~Ll~~gad~----------~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~------~d~~g~  188 (471)
T PHA03095        125 LSGFNINPKVIRLLLRKGADV----------NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA------VDDRFR  188 (471)
T ss_pred             hhCCcCCHHHHHHHHHcCCCC----------CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc------cCCCCC
Confidence            9  556789999999876543          346889999999998876  56889999998876532      356789


Q ss_pred             hHHHHHHHh--CcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcH--HHHHHhhcCCCCcccccCCCCCcHHHHHHh
Q 048248          156 TLLHSAIIK--SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHF--KIACRLSDEDDSLVYQHDCNGQSPLHLASQ  231 (316)
Q Consensus       156 t~lh~A~~~--~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~--~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  231 (316)
                      ||||+++..  +...+++.|+..+ .+++.+|..|.||||+|+..|..  .++..|+. .+.+++.+|..|+||||+|+.
T Consensus       189 t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~  266 (471)
T PHA03095        189 SLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAV  266 (471)
T ss_pred             CHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence            999999865  6677888887765 45899999999999999998875  35555554 456678889999999999999


Q ss_pred             cCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCccc
Q 048248          232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV  281 (316)
Q Consensus       232 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~  281 (316)
                      .|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++..|++.+..
T Consensus       267 ~~~~~~v~~LL~~g-ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        267 FNNPRACRRLIALG-ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             cCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            99999999999875 45799999999999999999999999999987543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-37  Score=275.48  Aligned_cols=244  Identities=20%  Similarity=0.239  Sum_probs=137.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCc
Q 048248           38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNT  117 (316)
Q Consensus        38 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t  117 (316)
                      .+++||.|+..|+.+++++|++.|.+. +..+.+|.||||+|+..|+.+++++|++.++..          ...+.++.|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----------~~~~~~~~t   70 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP----------DVKYPDIES   70 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc----------cccCCCccc
Confidence            345566666666666666666555442 234445566666666666666666665543321          112345556


Q ss_pred             HHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHH
Q 048248          118 PLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAA  197 (316)
Q Consensus       118 ~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  197 (316)
                      |||.|+..|+.++++.|+..+.....     ..+..|.||||+|+..|+.++++.|+..+. +++.++..|.||||+|+.
T Consensus        71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga-d~~~~~~~g~tpLh~A~~  144 (413)
T PHA02875         71 ELHDAVEEGDVKAVEELLDLGKFADD-----VFYKDGMTPLHLATILKKLDIMKLLIARGA-DPDIPNTDKFSPLHLAVM  144 (413)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccc-----cccCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHH
Confidence            66666666666666666655433211     122345666666666666666666665543 356666666666666666


Q ss_pred             hCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCC-CcHHHHHHHcCChhHHHHHh
Q 048248          198 LGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKN-RNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       198 ~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      .|+.++++.|+..+. +++.+|..|+||||+|+..|+.+++++|++.+.. ++..+..| .||+|+|+..|+.+++++|+
T Consensus       145 ~~~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll  222 (413)
T PHA02875        145 MGDIKGIELLIDHKA-CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFI  222 (413)
T ss_pred             cCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence            666666666665433 3445566666666666666666666666655433 45555554 35666666666666666666


Q ss_pred             cCcccccccccCCCCCCcHHHHHH
Q 048248          277 KQPEVEDLINSSDVDGNTPLHLAA  300 (316)
Q Consensus       277 ~~~~~~~~~~~~d~~g~t~L~~A~  300 (316)
                      +.|.........+..+.||+++++
T Consensus       223 ~~gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        223 KRGADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             HCCcCcchHhhcCCCchHHHHHHH
Confidence            665443333334555666666554

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=278.24  Aligned_cols=279  Identities=15%  Similarity=0.148  Sum_probs=226.4

Q ss_pred             HHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHh--CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC-----
Q 048248           11 ALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARF--GHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG-----   83 (316)
Q Consensus        11 a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g-----   83 (316)
                      .+...+.+.++.|+.. |.+++.. ..|.||||+++..  ++.++|++|++.|++.. ..+ .+.||||.|+..+     
T Consensus        10 ~~~~~~~~~v~~LL~~-GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn-~~~-~~~tpL~~a~~~~~~~~~   85 (494)
T PHA02989         10 YSDTVDKNALEFLLRT-GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVN-YKG-YIETPLCAVLRNREITSN   85 (494)
T ss_pred             cCCcCcHHHHHHHHHc-CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCcc-CCC-CCCCcHHHHHhccCcchh
Confidence            4456889999877755 5778877 6799999876554  36899999999998753 344 5799999998754     


Q ss_pred             -ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhc---CChhHHHHHHhhCCCcccccccccCCCCCchHHH
Q 048248           84 -NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK---CDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLH  159 (316)
Q Consensus        84 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh  159 (316)
                       ..+++++|++.+++          ++.+|..|.||||+|+..   ++.++++.|++.|+++.     ...+..|.||||
T Consensus        86 ~~~~iv~~Ll~~Gad----------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin-----~~~d~~g~tpLh  150 (494)
T PHA02989         86 KIKKIVKLLLKFGAD----------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN-----DVKNSRGYNLLH  150 (494)
T ss_pred             hHHHHHHHHHHCCCC----------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc-----cccCCCCCCHHH
Confidence             46799999988765          344688999999988765   57899999999987752     234668999999


Q ss_pred             HHHHh--CcHHHHHHHHHhccccccc-cccCCCcHHHHHHHhC----cHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc
Q 048248          160 SAIIK--SQFVVMAKILEAKRDLINV-RDERNRNPLRYAAALG----HFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN  232 (316)
Q Consensus       160 ~A~~~--~~~~~~~~ll~~~~~~~~~-~d~~g~tpLh~A~~~g----~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  232 (316)
                      +|+..  ++.++++.|++.+.+ ++. .+..|.||||+|+..+    +.++++.|++.+. +++.+|..|.||||.++..
T Consensus       151 ~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga-~vn~~~~~~~t~l~~~~~~  228 (494)
T PHA02989        151 MYLESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV-NIETNNNGSESVLESFLDN  228 (494)
T ss_pred             HHHHhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccccccHHHHHHHHhCCC-CccccCCccccHHHHHHHh
Confidence            98754  578999999987754 566 6789999999998764    7899999997765 4566788899999987654


Q ss_pred             C------CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChh
Q 048248          233 G------QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN  306 (316)
Q Consensus       233 g------~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~  306 (316)
                      +      ..+++++|+. + .+++.+|..|+||||+|+..|+.+++++|++.|.   .++.+|..|.||||+|++.++.+
T Consensus       229 ~~~~~~~~~~il~~l~~-~-advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Ga---din~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        229 NKILSKKEFKVLNFILK-Y-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGD---DIYNVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             chhhcccchHHHHHHHh-C-CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCC---CccccCCCCCCHHHHHHHcCCHH
Confidence            3      4677887664 4 6689999999999999999999999999999875   47889999999999999999999


Q ss_pred             HHHHHhhcC
Q 048248          307 IILVLARNM  315 (316)
Q Consensus       307 ~~~~Ll~~~  315 (316)
                      +++.|+++.
T Consensus       304 iv~~LL~~~  312 (494)
T PHA02989        304 MLNRILQLK  312 (494)
T ss_pred             HHHHHHhcC
Confidence            999999864

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-36  Score=256.56  Aligned_cols=231  Identities=16%  Similarity=0.118  Sum_probs=196.7

Q ss_pred             hCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCC
Q 048248           48 FGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD  127 (316)
Q Consensus        48 ~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~  127 (316)
                      .+..+++++|++.++.   ..|.+|+||||+|+..|+.+++++|+..++..+          .  .+|+||||+|+..++
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n----------~--~d~~TpLh~Aa~~g~   73 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKN----------L--LENEFPLHQAATLED   73 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc----------C--CCCCCHHHHHHHCCC
Confidence            4567889999997764   468899999999999999999999998764422          1  247899999999999


Q ss_pred             hhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCC-cHHHHHHHhCcHHHHHH
Q 048248          128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNR-NPLRYAAALGHFKIACR  206 (316)
Q Consensus       128 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~-tpLh~A~~~g~~~~~~~  206 (316)
                      .++++.|+..+..+      +.++..|.||||+|+..|+.++++.|+..+. +++.++..|+ ||||+|+..|+.++++.
T Consensus        74 ~eiV~lLL~~Gadv------n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ga-din~~~~~g~~TpL~~Aa~~g~~eivk~  146 (284)
T PHA02791         74 TKIVKILLFSGMDD------SQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-RLMFYGKTGWKTSFYHAVMLNDVSIVSY  146 (284)
T ss_pred             HHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CcCccCCCCCcHHHHHHHHcCCHHHHHH
Confidence            99999999987654      3356789999999999999999999987764 4788888885 89999999999999999


Q ss_pred             hhcCCCCcccccC-CCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcH-HHHHHHcCChhHHHHHhcCcccccc
Q 048248          207 LSDEDDSLVYQHD-CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI-LHLAAQNGHADVVVFILKQPEVEDL  284 (316)
Q Consensus       207 ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~~~~~Ll~~~~~~~~  284 (316)
                      |+..++..   .| ..|.||||+|+..|+.+++++|++.++ +++.+|..|.|| ||+|+..|+.+++++|++.+.   .
T Consensus       147 LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA-d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga---~  219 (284)
T PHA02791        147 FLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDI---N  219 (284)
T ss_pred             HHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCC---C
Confidence            99876543   23 358999999999999999999998764 578999999987 999999999999999999874   3


Q ss_pred             cccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 048248          285 INSSDVDGNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       285 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                      ++.+|. +.|||      ++.|++++||++
T Consensus       220 in~~~~-~~~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        220 IYSVNL-ENVLL------DDAEIAKMIIEK  242 (284)
T ss_pred             CccCcc-cCccC------CCHHHHHHHHHh
Confidence            688888 44888      788999999986

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-36  Score=275.43  Aligned_cols=281  Identities=17%  Similarity=0.180  Sum_probs=219.2

Q ss_pred             HHHHHHhcCChHHHHHHHHhc---CCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            7 KLFRALRHGYTDKVREFARLN---GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         7 ~l~~a~~~g~~~~~~~ll~~~---~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      .|+.+......+.+...+..-   +...+.....+.||||+|++.|+.++|++|++.|++. +..+.+|+||||+|+..|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEP   81 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCc
Confidence            467777777766665655542   2222334557899999999999999999999998764 568889999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII  163 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~  163 (316)
                      +.+.++.|+.......            -..+.+|++.|+..++.++++.|+..+......        .....+.....
T Consensus        82 ~~~~v~~Ll~~~~~~~------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~--------~~~~~~~~~~~  141 (477)
T PHA02878         82 NKLGMKEMIRSINKCS------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQT--------IDLVYIDKKSK  141 (477)
T ss_pred             cHhHHHHHHHHHhccc------------cccchhhHHHHHHcCCHHHHHHHHhCcccCccc--------CcHHHHhhccc
Confidence            9999999997542211            145778999999999999999999864322110        00111111111


Q ss_pred             h--CcHHHHHHHHHhccccccccccC-CCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHH
Q 048248          164 K--SQFVVMAKILEAKRDLINVRDER-NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN  240 (316)
Q Consensus       164 ~--~~~~~~~~ll~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  240 (316)
                      .  ...++++.|+..+ .+++.++.. |.||||+|+..|+.++++.|+..++ +++..|..|+||||.|+..|+.+++++
T Consensus       142 ~~~~~~~iv~~Ll~~g-adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga-d~n~~d~~g~tpLh~A~~~~~~~iv~~  219 (477)
T PHA02878        142 DDIIEAEITKLLLSYG-ADINMKDRHKGNTALHYATENKDQRLTELLLSYGA-NVNIPDKTNNSPLHHAVKHYNKPIVHI  219 (477)
T ss_pred             hhhHHHHHHHHHHHcC-CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            1  1235788877765 458999988 9999999999999999999997654 567789999999999999999999999


Q ss_pred             HHhhCCCCccccccCCCcHHHHHHHc-CChhHHHHHhcCcccccccccCCC-CCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          241 LLHSYPDSIEFIDNKNRNILHLAAQN-GHADVVVFILKQPEVEDLINSSDV-DGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       241 Ll~~~~~~~~~~d~~g~tpLh~A~~~-g~~~~~~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      |++.+ .+++.+|..|+||||+|+.. ++.+++++|++.+.   .++.++. .|.||||+|  .++.+++++|++.++
T Consensus       220 Ll~~g-a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga---dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~ga  291 (477)
T PHA02878        220 LLENG-ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV---DVNAKSYILGLTALHSS--IKSERKLKLLLEYGA  291 (477)
T ss_pred             HHHcC-CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC---CCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCC
Confidence            99876 45799999999999999976 78999999999875   3566664 799999999  578899999998864

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-37  Score=229.40  Aligned_cols=218  Identities=22%  Similarity=0.291  Sum_probs=180.7

Q ss_pred             CCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhc-cCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccC
Q 048248           72 SETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRK-RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQ  150 (316)
Q Consensus        72 g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  150 (316)
                      +.++.+.+++...+..++.++.+..         ..++. .|.+|+||||+|++.|+.+++.+|+... .+    ..+.+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~---------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~-nv----~~ddk   68 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP---------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQP-NV----KPDDK   68 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh---------hhhhccccccCCceeeeeeecCchhHHHHHHhcC-CC----CCCCc
Confidence            4677788888777777777775421         12333 4559999999999999999999999732 21    12345


Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      |..|+||||+|+..|+.++|+.|+.+.+.++|..++.|.|+||||+..|.++++..|+..+ +.+..+|+.|.||||-|+
T Consensus        69 DdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtplHRAA  147 (226)
T KOG4412|consen   69 DDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAA  147 (226)
T ss_pred             cccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCchhHHHH
Confidence            7789999999999999999999999977789999999999999999999999999888776 567789999999999999


Q ss_pred             hcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHH
Q 048248          231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL  309 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  309 (316)
                      ..|+.+++++|+..+ +.+|..|+.|+||||.|.-.|+.++..+|++.+.   .++..|++| ||+-.|+-.=...+.+
T Consensus       148 avGklkvie~Li~~~-a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA---d~~~edke~-t~~~~a~~~l~~alk~  221 (226)
T KOG4412|consen  148 AVGKLKVIEYLISQG-APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGA---DTDREDKEG-TALRIACNELLEALKE  221 (226)
T ss_pred             hccchhhHHHHHhcC-CCCCcccccCccHHHHHHhccCchHHHHHHHhcc---ceeeccccC-chHHHHHHHHHHHHHH
Confidence            999999999999876 6679999999999999988899999999999874   356778888 9988886544433333

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-37  Score=229.85  Aligned_cols=207  Identities=24%  Similarity=0.301  Sum_probs=123.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCccccc-cCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh
Q 048248            7 KLFRALRHGYTDKVREFARLNGNRILGT-SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF   85 (316)
Q Consensus         7 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~   85 (316)
                      +.+..+.......+++++...+..++.+ |++|+||||+||++|+.++|.+|++...-.++-.|..||||||+|+..|+.
T Consensus         6 ~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~   85 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGND   85 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcH
Confidence            4455555556666666665555444443 336666666666666666666666422222222344566666666666655


Q ss_pred             hHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC
Q 048248           86 GAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS  165 (316)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~  165 (316)
                      ++++.|+...                                          ++++      +..+..|.||||+|+.+|
T Consensus        86 evVk~Ll~r~------------------------------------------~adv------na~tn~G~T~LHyAagK~  117 (226)
T KOG4412|consen   86 EVVKELLNRS------------------------------------------GADV------NATTNGGQTCLHYAAGKG  117 (226)
T ss_pred             HHHHHHhcCC------------------------------------------CCCc------ceecCCCcceehhhhcCC
Confidence            5555555431                                          2221      122335666666666666


Q ss_pred             cHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhC
Q 048248          166 QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSY  245 (316)
Q Consensus       166 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  245 (316)
                      .+++++.|++.+ +.++.+|..|.||||.|+..|..+++++|+..+ +..+..|+.|+||||.|...|+.++...|+..+
T Consensus       118 r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~~-a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  118 RLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG-APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             hhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHHHHhcC-CCCCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            667666666555 446677777777777777777777777776655 334556777777777776666777766666665


Q ss_pred             CCCccccccCCCcHHHHHHH
Q 048248          246 PDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       246 ~~~~~~~d~~g~tpLh~A~~  265 (316)
                       ++++..|+.| ||+..|+.
T Consensus       196 -Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  196 -ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             -cceeeccccC-chHHHHHH
Confidence             4456666666 77666554

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-35  Score=267.43  Aligned_cols=132  Identities=9%  Similarity=0.012  Sum_probs=93.5

Q ss_pred             ccHHHHHHHhcC---ChHHHHHHHHhcCCccccccCCCChHHHHHHHhC--CHHHHHHHHhcCCCc-cccCCCCCCcHHH
Q 048248            4 VDHKLFRALRHG---YTDKVREFARLNGNRILGTSQNGDTALHIAARFG--HEILVMEILKHQSDL-VSVPNHKSETPMH   77 (316)
Q Consensus         4 ~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~-~~~~~~~g~tpLh   77 (316)
                      ..+|||.|+..|   +.+.++.|+ ..|++++.++..|+||||+|+..+  +.++|++|++.+++. ....++.+.+|||
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~  119 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY  119 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence            468999999997   488886666 567889999999999999999977  799999999987542 2335666899999


Q ss_pred             HHHH--hCChhHHHHhhccCCCCCCCCcchhhhhccC-CCCCcHHHHHHhcCChhHHHHHHhhCCCc
Q 048248           78 VAAR--AGNFGAAQIFMRPHGNGNNTGTFDDILRKRD-EEGNTPLHNAVRKCDGKMAFTMIKKDPEP  141 (316)
Q Consensus        78 ~A~~--~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~ll~~~~~~  141 (316)
                      .++.  .++.+++++|+..++...+..     .+..+ ..|.+|++++...++.++++.|++.|+.+
T Consensus       120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~-----~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        120 SYMSSDNIDLRLLKYLIVDKRIRPSKN-----TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             HHHHhcCCcHHHHHHHHHhcCCChhhh-----hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence            9888  888999999996443221100     00011 24555666665555566666666555544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-35  Score=262.55  Aligned_cols=252  Identities=19%  Similarity=0.247  Sum_probs=210.9

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      ..+|+.|+..|+.+.++.|+.. |.+++..+..|.||||+|+..|+.+++++|++.++.. ...+.++.||||.|+..|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCC
Confidence            4689999999999999888865 5677888889999999999999999999999998763 4566789999999999999


Q ss_pred             hhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh
Q 048248           85 FGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK  164 (316)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~  164 (316)
                      .+++++|++.+....         ...+.+|+||||+|+..++.++++.|++.|+++.      ..+..|.||||+|+..
T Consensus        81 ~~~v~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~------~~~~~g~tpLh~A~~~  145 (413)
T PHA02875         81 VKAVEELLDLGKFAD---------DVFYKDGMTPLHLATILKKLDIMKLLIARGADPD------IPNTDKFSPLHLAVMM  145 (413)
T ss_pred             HHHHHHHHHcCCccc---------ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC------CCCCCCCCHHHHHHHc
Confidence            999999998754322         2246689999999999999999999999987652      3456789999999999


Q ss_pred             CcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCC-CcHHHHHHhcCCHhHHHHHHh
Q 048248          165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNG-QSPLHLASQNGQLSILENLLH  243 (316)
Q Consensus       165 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~  243 (316)
                      |+.++++.|+..+. .++.+|..|.||||+|+..|+.++++.|++.++.. +..+..| .||+|+|+..|+.+++++|++
T Consensus       146 ~~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        146 GDIKGIELLIDHKA-CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             CCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            99999999997765 58999999999999999999999999999877654 4556655 589999999999999999999


Q ss_pred             hCCCCccc---cccCCCcHHHHHHHc---CChhHHHHHh
Q 048248          244 SYPDSIEF---IDNKNRNILHLAAQN---GHADVVVFIL  276 (316)
Q Consensus       244 ~~~~~~~~---~d~~g~tpLh~A~~~---g~~~~~~~Ll  276 (316)
                      .+++ ++.   .+..+.|||++.+..   ...+++..++
T Consensus       224 ~gad-~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        224 RGAD-CNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             CCcC-cchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            8755 344   467899999988754   3345554444

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-34  Score=266.57  Aligned_cols=287  Identities=12%  Similarity=0.083  Sum_probs=206.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHH--HhCCHHHHHHHHhcCCCccccCC---CCC--------
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAA--RFGHEILVMEILKHQSDLVSVPN---HKS--------   72 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~v~~Ll~~~~~~~~~~~---~~g--------   72 (316)
                      .+++.|+..|+.+.++.|+.. |.+++..+.+|+||||+|+  ..|+.++|++|++.|++.. ..|   ..|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccccccccccc
Confidence            566778888899999777644 6889999999999999654  5689999999999998753 222   223        


Q ss_pred             ---CcHHHHHHH-----------hCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCCh--hHHHHHHh
Q 048248           73 ---ETPMHVAAR-----------AGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG--KMAFTMIK  136 (316)
Q Consensus        73 ---~tpLh~A~~-----------~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~--~~~~~ll~  136 (316)
                         .||||+|+.           .++.+++++|+..+++          ++.+|.+|+||||+|+..++.  ++++.|+.
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad----------vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK----------PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC----------cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence               599999986           4588999999988765          345689999999999999885  68888875


Q ss_pred             hCCCcccccccccCCCCCchHHHHHHHhC---------cHHHHHHHHHhccc----------------------------
Q 048248          137 KDPEPIRYNNKAKQGPNNLTLLHSAIIKS---------QFVVMAKILEAKRD----------------------------  179 (316)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~t~lh~A~~~~---------~~~~~~~ll~~~~~----------------------------  179 (316)
                       +.+....  ....+..+.+|+|+|+..+         +.++++.||+.+.+                            
T Consensus       253 -g~d~~~~--~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (661)
T PHA02917        253 -GIDNTAY--SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSD  329 (661)
T ss_pred             -CCccccc--ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchH
Confidence             5443221  1123444555666665311         44555555554422                            


Q ss_pred             ----------------------------cccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHh
Q 048248          180 ----------------------------LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ  231 (316)
Q Consensus       180 ----------------------------~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  231 (316)
                                                  +++.++..|.|+.    .....++++.|+...+++...++.+|+||||.|++
T Consensus       330 ~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~  405 (661)
T PHA02917        330 VLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCK  405 (661)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHH
Confidence                                        2333333333322    11223345555554444434456679999999875


Q ss_pred             cC-----------------------CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccC
Q 048248          232 NG-----------------------QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS  288 (316)
Q Consensus       232 ~g-----------------------~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~  288 (316)
                      ++                       ..+++++|+..+ ++++.+|..|+||||+|+..++.+++++|++.+.   .++.+
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G-AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GA---din~~  481 (661)
T PHA02917        406 SNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYL-KDINMIDKRGETLLHKAVRYNKQSLVSLLLESGS---DVNIR  481 (661)
T ss_pred             hcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcC---CCCCC
Confidence            43                       356789999876 4579999999999999999999999999999874   47889


Q ss_pred             CCCCCcHHHHHHH-cCChhHHHHHhhcC
Q 048248          289 DVDGNTPLHLAAI-NNHFNIILVLARNM  315 (316)
Q Consensus       289 d~~g~t~L~~A~~-~~~~~~~~~Ll~~~  315 (316)
                      |..|.||||+|+. .++.+++++|+..+
T Consensus       482 d~~G~T~L~~A~~~~~~~~iv~~LL~~g  509 (661)
T PHA02917        482 SNNGYTCIAIAINESRNIELLKMLLCHK  509 (661)
T ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence            9999999999996 68899999999765

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.4e-34  Score=264.99  Aligned_cols=294  Identities=16%  Similarity=0.097  Sum_probs=194.6

Q ss_pred             ccHHHHHHHhc---CChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHH----HHHHHHhcCCCccccCCCCCCcHH
Q 048248            4 VDHKLFRALRH---GYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEI----LVMEILKHQSDLVSVPNHKSETPM   76 (316)
Q Consensus         4 ~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~tpL   76 (316)
                      ..+|||.|+..   |+.+.++.|+. .|.+++..+..|+||||+|+..|+.+    +++.|+..++. .+..+  ..+++
T Consensus        32 g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~~--~~~~~  107 (661)
T PHA02917         32 KNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIND--FNIFS  107 (661)
T ss_pred             CCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCCC--cchHH
Confidence            35678875444   77788866664 45666777777888888888777743    44555554332 12221  23556


Q ss_pred             HHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHH--hcCChhHHHHHHhhCCCcccccccc------
Q 048248           77 HVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAV--RKCDGKMAFTMIKKDPEPIRYNNKA------  148 (316)
Q Consensus        77 h~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~------  148 (316)
                      |+|+..++.+++++|+..+++          ++.+|.+|+||||+++  ..++.++++.|++.|+++.......      
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gad----------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~  177 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFD----------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY  177 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCC----------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc
Confidence            667777777777777766544          3346788999998654  4578899999999887663211100      


Q ss_pred             --cCCCCCchHHHHHHH-----------hCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcH--HHHHHhhcCCCC
Q 048248          149 --KQGPNNLTLLHSAII-----------KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHF--KIACRLSDEDDS  213 (316)
Q Consensus       149 --~~~~~~~t~lh~A~~-----------~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~--~~~~~ll~~~~~  213 (316)
                        .+...+.||||+|+.           .++.++++.|+..+ ++++.+|.+|.||||+|++.|+.  ++++.|++ ++.
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d  255 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GID  255 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCc
Confidence              112234699999875           35778888888766 45888999999999999998875  67777764 332


Q ss_pred             cc---cccCCCCCcHHHHHH------------------------------------------------------------
Q 048248          214 LV---YQHDCNGQSPLHLAS------------------------------------------------------------  230 (316)
Q Consensus       214 ~~---~~~d~~g~tpLh~A~------------------------------------------------------------  230 (316)
                      ..   ...|..|.||+|+|+                                                            
T Consensus       256 ~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  335 (661)
T PHA02917        256 NTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHIL  335 (661)
T ss_pred             ccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHH
Confidence            21   112333344444443                                                            


Q ss_pred             ----hcCC--HhHHHHHHhhCC-----------------------------CCccccccCCCcHHHHHHHcC--------
Q 048248          231 ----QNGQ--LSILENLLHSYP-----------------------------DSIEFIDNKNRNILHLAAQNG--------  267 (316)
Q Consensus       231 ----~~g~--~~iv~~Ll~~~~-----------------------------~~~~~~d~~g~tpLh~A~~~g--------  267 (316)
                          ..|.  .+++++|++.|+                             +.++.++.+|+||||.|++.+        
T Consensus       336 ~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~  415 (661)
T PHA02917        336 IEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYT  415 (661)
T ss_pred             HHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhh
Confidence                2332  236666665532                             222344567999999998543        


Q ss_pred             ---------------ChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          268 ---------------HADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       268 ---------------~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                                     ..+++++|++.+.   .++.+|..|+||||+|+..++.+++++|++.++
T Consensus       416 ~~~~~~~~~~~~~~~~~~~v~~Ll~~GA---dIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GA  476 (661)
T PHA02917        416 YTYKKGLCDMSYACPILSTINICLPYLK---DINMIDKRGETLLHKAVRYNKQSLVSLLLESGS  476 (661)
T ss_pred             hhhhhccchhhhhhhhHHHHHHHHHCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcC
Confidence                           2467789998874   478899999999999999999999999998763

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=263.26  Aligned_cols=273  Identities=15%  Similarity=0.160  Sum_probs=217.3

Q ss_pred             ChHHHHHHHHhcCCccccccCCCChHHHHHHH--hCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh-----CChhHH
Q 048248           16 YTDKVREFARLNGNRILGTSQNGDTALHIAAR--FGHEILVMEILKHQSDLVSVPNHKSETPMHVAARA-----GNFGAA   88 (316)
Q Consensus        16 ~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~~~   88 (316)
                      ..+.|+.++.. +. ++.. ..|.|+++....  .++.++|++|++.|++. +..+..|.||||.|+..     +..+++
T Consensus        17 ~~~~v~~ll~~-~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         17 KLSTVKLLIKS-CN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             cHHHHHHHHhc-CC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            45678777743 33 3333 457787764443  34789999999999874 56778999999998864     668999


Q ss_pred             HHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcC---ChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC
Q 048248           89 QIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC---DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS  165 (316)
Q Consensus        89 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~  165 (316)
                      ++|++.+++          ++.+|..|+||||+|+..+   +.++++.|++.|+++      +..+..|.||||+|+..+
T Consensus        93 ~~Ll~~Gad----------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv------n~~d~~g~tpL~~a~~~~  156 (489)
T PHA02798         93 KILIENGAD----------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT------TLLDKDGFTMLQVYLQSN  156 (489)
T ss_pred             HHHHHCCCC----------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc------cccCCCCCcHHHHHHHcC
Confidence            999987655          3456889999999999875   678999999988765      345678999999999988


Q ss_pred             c---HHHHHHHHHhccccccccc-cCCCcHHHHHHHh----CcHHHHHHhhcCCCCcccccCCCCCcHHH-------HHH
Q 048248          166 Q---FVVMAKILEAKRDLINVRD-ERNRNPLRYAAAL----GHFKIACRLSDEDDSLVYQHDCNGQSPLH-------LAS  230 (316)
Q Consensus       166 ~---~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~~----g~~~~~~~ll~~~~~~~~~~d~~g~tpLh-------~A~  230 (316)
                      +   .++++.|++.+. +++.++ ..|.||||.++..    ++.++++.|++.+. +++..+..|.|+++       .+.
T Consensus       157 ~~~~~~vv~~Ll~~ga-din~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga-~i~~~~~~~~~~~~~~l~~l~~~~  234 (489)
T PHA02798        157 HHIDIEIIKLLLEKGV-DINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF-IINKENKSHKKKFMEYLNSLLYDN  234 (489)
T ss_pred             CcchHHHHHHHHHhCC-CcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC-CcccCCccccchHHHHHHHHHhhc
Confidence            7   899999888764 467664 5799999998764    36788888887654 45667788888877       245


Q ss_pred             hcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHH
Q 048248          231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILV  310 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  310 (316)
                      ..++.+++.+|+. + .+++.+|..|+||||+|+.+|+.+++++|++.|.   .++.+|..|+||||+|+.+++.++++.
T Consensus       235 ~~~~~~i~~~l~~-~-~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GA---din~~d~~G~TpL~~A~~~~~~~iv~~  309 (489)
T PHA02798        235 KRFKKNILDFIFS-Y-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG---DINIITELGNTCLFTAFENESKFIFNS  309 (489)
T ss_pred             ccchHHHHHHHHh-c-CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCC---cccccCCCCCcHHHHHHHcCcHHHHHH
Confidence            5677888988775 3 5689999999999999999999999999999875   478889999999999999999999999


Q ss_pred             HhhcC
Q 048248          311 LARNM  315 (316)
Q Consensus       311 Ll~~~  315 (316)
                      |++.+
T Consensus       310 lL~~~  314 (489)
T PHA02798        310 ILNKK  314 (489)
T ss_pred             HHccC
Confidence            98864

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=6.8e-36  Score=282.46  Aligned_cols=303  Identities=26%  Similarity=0.356  Sum_probs=193.8

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ..+|+|.|+..+..+.+ +++...|.++...+..|.||||.|+..|+.+++.+++..++.. .+.+..|.||+|.|++.+
T Consensus       209 ~~tpl~~a~~~nri~~~-eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~-~~~~vr~~tplh~AA~~~  286 (1143)
T KOG4177|consen  209 GFTPLHIACKKNRIKVV-ELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASV-NVSTVRGETPLHMAARAG  286 (1143)
T ss_pred             CCCchhhhcccccccee-eeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhccccc-CcccccccCcchhhhccc
Confidence            34577777777777777 4445556667777777777777777777777777777766653 445666777777777777


Q ss_pred             ChhHHHHhhccCCCCCCCC-----------------------------------c-----------chh----------h
Q 048248           84 NFGAAQIFMRPHGNGNNTG-----------------------------------T-----------FDD----------I  107 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~-----------------------------------~-----------~~~----------~  107 (316)
                      ..++++++++.+....-..                                   +           ..+          .
T Consensus       287 ~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~  366 (1143)
T KOG4177|consen  287 QVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQ  366 (1143)
T ss_pred             hhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccc
Confidence            7777777776554321110                                   0           000          0


Q ss_pred             hhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCccccc---------------------------ccccCCCCCchHHHH
Q 048248          108 LRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYN---------------------------NKAKQGPNNLTLLHS  160 (316)
Q Consensus       108 ~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~---------------------------~~~~~~~~~~t~lh~  160 (316)
                      -...+..|.||+|.|+..++.++++.++..+..+....                           ..+..+..|+||+|+
T Consensus       367 ~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhv  446 (1143)
T KOG4177|consen  367 RRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHV  446 (1143)
T ss_pred             cCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhh
Confidence            01135567788888888888888888888776542111                           111223457788888


Q ss_pred             HHHhC-cHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCC----------------------------
Q 048248          161 AIIKS-QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED----------------------------  211 (316)
Q Consensus       161 A~~~~-~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~----------------------------  211 (316)
                      |+..| ..+....++ ..+.+++.....|.||||.|++.|+.+++..++...                            
T Consensus       447 aa~~g~~~~~~~~l~-~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~  525 (1143)
T KOG4177|consen  447 AAKKGRYLQIARLLL-QYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKI  525 (1143)
T ss_pred             hhhcccHhhhhhhHh-hcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHH
Confidence            88777 445444433 444557777788888888888888877776666533                            


Q ss_pred             ----CCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCccccccccc
Q 048248          212 ----DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINS  287 (316)
Q Consensus       212 ----~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~  287 (316)
                          +...+.++..|+||||.|+.+|+.++|++|++++. +++.+++.|+||||.||.+|+.+|+.+|+++|..   +|.
T Consensus       526 l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gA-dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~---vna  601 (1143)
T KOG4177|consen  526 LLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGA-DVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS---VNA  601 (1143)
T ss_pred             HhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCc-cccccCCCCCChhhHHHHcChHHHHHHHHHcCCC---CCc
Confidence                22333445556677777777777777777776543 3566667777777777777777777777766543   566


Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          288 SDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       288 ~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      .|.+|.||||+|++.|+..+++.|+.
T Consensus       602 ~d~~g~TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             ccccCcchhHHHHHhcccchhhHHHh
Confidence            66777777777777777777776654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.2e-35  Score=279.06  Aligned_cols=280  Identities=25%  Similarity=0.291  Sum_probs=212.1

Q ss_pred             CcccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 048248            2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR   81 (316)
Q Consensus         2 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   81 (316)
                      +...+|+|.|++.|+.+.++.++.. +..++.....|.||||.|+.+++..+|+.+++.++.. +..+..|.||+|+|+.
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEA-GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhc-cCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhh
Confidence            4456677777777777777544443 4456677777777777777777777777777766653 4456667777777777


Q ss_pred             hC-ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHH
Q 048248           82 AG-NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHS  160 (316)
Q Consensus        82 ~g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~  160 (316)
                      .| ..+.+..+...+..          ++.....|.||||.|+..|+.+++..+++.+...      ....+.+.|++|+
T Consensus       450 ~g~~~~~~~~l~~~g~~----------~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~------~~~~~~~l~~lhl  513 (1143)
T KOG4177|consen  450 KGRYLQIARLLLQYGAD----------PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND------NLDAKKGLTPLHL  513 (1143)
T ss_pred             cccHhhhhhhHhhcCCC----------cchhccccCcchhhhhccCCchHHHHhhhcCCcc------Cccchhccchhhh
Confidence            77 44555444443322          3345678888888888888888888888765322      2234467889999


Q ss_pred             HHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHH
Q 048248          161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN  240 (316)
Q Consensus       161 A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  240 (316)
                      |...+....++.++..+ ..++.++.+|.||||.|+..|+.++|+.|++.+. +.+.+++.|+||||.||..|+.+|+++
T Consensus       514 a~~~~~v~~~~~l~~~g-a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gA-dv~ak~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  514 AADEDTVKVAKILLEHG-ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGA-DVNAKDKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             hhhhhhHHHHHHHhhcC-CceehhcccccchHHHHHhcCCchHHHHhhhCCc-cccccCCCCCChhhHHHHcChHHHHHH
Confidence            98888888887777665 4588999999999999999999999999996655 567789999999999999999999999


Q ss_pred             HHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccc--cccccCCCCCCcHHHHHHHc
Q 048248          241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVE--DLINSSDVDGNTPLHLAAIN  302 (316)
Q Consensus       241 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~--~~~~~~d~~g~t~L~~A~~~  302 (316)
                      |++++. .+|..|.+|.||||+|+..|+.++++.|+..+...  .+....+.+|.+|..++...
T Consensus       592 Llk~GA-~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  592 LLKHGA-SVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             HHHcCC-CCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence            998764 57999999999999999999999999999876431  12345678899998877544

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=257.28  Aligned_cols=256  Identities=15%  Similarity=0.164  Sum_probs=205.4

Q ss_pred             ccHHHHHHHhcC--ChHHHHHHHHhcCCccccccCCCChHHHHHHHhC------CHHHHHHHHhcCCCccccCCCCCCcH
Q 048248            4 VDHKLFRALRHG--YTDKVREFARLNGNRILGTSQNGDTALHIAARFG------HEILVMEILKHQSDLVSVPNHKSETP   75 (316)
Q Consensus         4 ~~~~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~------~~~~v~~Ll~~~~~~~~~~~~~g~tp   75 (316)
                      ..++++.++..+  +.+.++.|++ .|++++..+ .+.||||.|+..+      +.++|++|++.|++ ++..+..|.||
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~-~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~tp  111 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLID-NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD-INLKTFNGVSP  111 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHH-cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            345776654443  5788866665 567888765 5799999998754      46899999999987 46678899999


Q ss_pred             HHHHHHh---CChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhc--CChhHHHHHHhhCCCcccccccccC
Q 048248           76 MHVAARA---GNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK--CDGKMAFTMIKKDPEPIRYNNKAKQ  150 (316)
Q Consensus        76 Lh~A~~~---g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~  150 (316)
                      ||.|+..   ++.+++++|++.+++.+         ..+|..|+||||+|+..  ++.++++.|++.|+++...     .
T Consensus       112 L~~a~~~~~~~~~eiv~~Ll~~Gadin---------~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~-----~  177 (494)
T PHA02989        112 IVCFIYNSNINNCDMLRFLLSKGINVN---------DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK-----T  177 (494)
T ss_pred             HHHHHHhcccCcHHHHHHHHHCCCCcc---------cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-----c
Confidence            9988765   67899999999876531         24588999999999865  5789999999998776321     3


Q ss_pred             CCCCchHHHHHHHhC----cHHHHHHHHHhccccccccccCCCcHHHHHHHhC------cHHHHHHhhcCCCCcccccCC
Q 048248          151 GPNNLTLLHSAIIKS----QFVVMAKILEAKRDLINVRDERNRNPLRYAAALG------HFKIACRLSDEDDSLVYQHDC  220 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~----~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g------~~~~~~~ll~~~~~~~~~~d~  220 (316)
                      +..|.||||+|+..+    +.++++.|+..+. +++.+|..|.||||.++..+      ..+++..++ .+ .+++.+|.
T Consensus       178 ~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga-~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~-~~-advn~~d~  254 (494)
T PHA02989        178 SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV-NIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL-KY-IKINKKDK  254 (494)
T ss_pred             cccCCChHHHHHhcccccccHHHHHHHHhCCC-CccccCCccccHHHHHHHhchhhcccchHHHHHHH-hC-CCCCCCCC
Confidence            457899999998754    8899999988765 58888989999999887643      345555444 44 67788999


Q ss_pred             CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       221 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      .|+||||+|+..|+.+++++|++.+. +++.+|..|+||||+|+..|+.++++.|++..+
T Consensus       255 ~G~TpL~~Aa~~~~~~~v~~LL~~Ga-din~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        255 KGFNPLLISAKVDNYEAFNYLLKLGD-DIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCHHHHHHHhcCHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999999999998764 579999999999999999999999999998653

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.4e-33  Score=255.24  Aligned_cols=250  Identities=17%  Similarity=0.138  Sum_probs=204.6

Q ss_pred             HHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHh-----CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC--
Q 048248           11 ALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARF-----GHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG--   83 (316)
Q Consensus        11 a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--   83 (316)
                      +...++.+.++.|+. .|.+++..+..|.||||+|+..     ++.+++++|++.|++ ++..+.+|+||||+|+..+  
T Consensus        45 ~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~  122 (489)
T PHA02798         45 QRDSPSTDIVKLFIN-LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-INKKNSDGETPLYCLLSNGYI  122 (489)
T ss_pred             hCCCCCHHHHHHHHH-CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCc
Confidence            444557888877765 4678999999999999999864     568999999999987 4667889999999999876  


Q ss_pred             -ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCC---hhHHHHHHhhCCCcccccccccCCCCCchHHH
Q 048248           84 -NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD---GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLH  159 (316)
Q Consensus        84 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh  159 (316)
                       +.+++++|++.+++          +...|..|.||||+|++.++   .++++.|++.|.++..     ..+..|.||||
T Consensus       123 ~~~~iv~~Ll~~Gad----------vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~-----~~~~~~~t~Lh  187 (489)
T PHA02798        123 NNLEILLFMIENGAD----------TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINT-----HNNKEKYDTLH  187 (489)
T ss_pred             ChHHHHHHHHHcCCC----------ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccc-----ccCcCCCcHHH
Confidence             67999999987655          34568999999999999887   8999999999876532     11346789999


Q ss_pred             HHHHh----CcHHHHHHHHHhccccccccccCCCcHHHH-------HHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHH
Q 048248          160 SAIIK----SQFVVMAKILEAKRDLINVRDERNRNPLRY-------AAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHL  228 (316)
Q Consensus       160 ~A~~~----~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~-------A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  228 (316)
                      .++..    ++.++++.|+..+. .++..+..|.++++.       +...+..+++..|+. + .+++.+|..|+||||+
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~~Ga-~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~-~dvN~~d~~G~TPL~~  264 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVDNGF-IINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-Y-IDINQVDELGFNPLYY  264 (489)
T ss_pred             HHHHhccccCCHHHHHHHHHCCC-CcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-c-CCCCCcCcCCccHHHH
Confidence            98764    47899999887764 578888899999872       333455566666554 3 6778899999999999


Q ss_pred             HHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCccc
Q 048248          229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV  281 (316)
Q Consensus       229 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~  281 (316)
                      |+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++..|++.+..
T Consensus       265 A~~~~~~~~v~~LL~~G-Adin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~  316 (489)
T PHA02798        265 SVSHNNRKIFEYLLQLG-GDINIITELGNTCLFTAFENESKFIFNSILNKKPN  316 (489)
T ss_pred             HHHcCcHHHHHHHHHcC-CcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCC
Confidence            99999999999999875 45799999999999999999999999999987643

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=250.71  Aligned_cols=307  Identities=13%  Similarity=0.073  Sum_probs=220.0

Q ss_pred             ccHHHHHHHhcC--ChHHHHHHHHhc-CCccccccCCCChHHHHHHH--hCCHHHHHHHHhcCCCccccC-C----CCCC
Q 048248            4 VDHKLFRALRHG--YTDKVREFARLN-GNRILGTSQNGDTALHIAAR--FGHEILVMEILKHQSDLVSVP-N----HKSE   73 (316)
Q Consensus         4 ~~~~l~~a~~~g--~~~~~~~ll~~~-~~~~~~~~~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~-~----~~g~   73 (316)
                      ..+|||.|+..|  +.+.++.|+..+ +.+++..+.-+++|||.++.  .++.++|++|+..++..++.. +    ..|.
T Consensus        77 G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~  156 (672)
T PHA02730         77 GLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGL  156 (672)
T ss_pred             CCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccch
Confidence            567888888866  677786666553 34557777778888888887  677888888886433222222 1    2688


Q ss_pred             cHHHHHHHhCChhHHHHhhccCCCCCCC----C----cc----------h-------------------hhhhccCCCCC
Q 048248           74 TPMHVAARAGNFGAAQIFMRPHGNGNNT----G----TF----------D-------------------DILRKRDEEGN  116 (316)
Q Consensus        74 tpLh~A~~~g~~~~~~~l~~~~~~~~~~----~----~~----------~-------------------~~~~~~~~~g~  116 (316)
                      +|++++...++.+++++|++.++.++..    .    ..          .                   ..++.+|.+|.
T Consensus       157 ~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~  236 (672)
T PHA02730        157 VDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGS  236 (672)
T ss_pred             hhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCC
Confidence            8888888888888888888887765200    0    00          0                   01345788999


Q ss_pred             cHHHHHH--hcCChhHHHHHHh--------------------------------hCCCccc----------ccccc----
Q 048248          117 TPLHNAV--RKCDGKMAFTMIK--------------------------------KDPEPIR----------YNNKA----  148 (316)
Q Consensus       117 t~L~~a~--~~~~~~~~~~ll~--------------------------------~~~~~~~----------~~~~~----  148 (316)
                      ||||++.  ..++.+++++|+.                                .+.+..-          ..+..    
T Consensus       237 TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  316 (672)
T PHA02730        237 LPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSIT  316 (672)
T ss_pred             CHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccc
Confidence            9999643  4466899999998                                2222100          00000    


Q ss_pred             cCCCCCch---------------------HHHHHHHhC---cHHHHHHHHHhccccccccccCCCcHHHHHHHhCc----
Q 048248          149 KQGPNNLT---------------------LLHSAIIKS---QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGH----  200 (316)
Q Consensus       149 ~~~~~~~t---------------------~lh~A~~~~---~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~----  200 (316)
                      ..+..|++                     .||.=...+   +.++++.|+..+. +++.. ..|.||||+|+..+.    
T Consensus       317 ~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA-dIN~k-~~G~TpLH~Aa~~nnn~i~  394 (672)
T PHA02730        317 SYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA-TMDKT-TDNNYPLHDYFVNNNNIVD  394 (672)
T ss_pred             cccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC-CCCcC-CCCCcHHHHHHHHcCCcch
Confidence            02223433                     455555544   5788888887764 57875 799999999998875    


Q ss_pred             HHHHHHhhcCCCC-cccccCCCCCcHHHH---HHhcC---------CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          201 FKIACRLSDEDDS-LVYQHDCNGQSPLHL---ASQNG---------QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       201 ~~~~~~ll~~~~~-~~~~~d~~g~tpLh~---A~~~g---------~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                      .++++.|++.++. +++.+|.+|.||||.   |...+         ..+++++|+..+ ++++.+|..|+||||+|+..+
T Consensus       395 ~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G-ADINakD~~G~TPLh~Aa~~~  473 (672)
T PHA02730        395 VNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM-DDIDMIDNENKTLLYYAVDVN  473 (672)
T ss_pred             HHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc-cchhccCCCCCCHHHHHHHhC
Confidence            7999999988763 677889999999994   33332         235689999765 457999999999999999999


Q ss_pred             ChhHHHHHhcCcccccccccCCC-CCCcHHHHHHHc--CChhHHHHHhhcCC
Q 048248          268 HADVVVFILKQPEVEDLINSSDV-DGNTPLHLAAIN--NHFNIILVLARNMS  316 (316)
Q Consensus       268 ~~~~~~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~--~~~~~~~~Ll~~~~  316 (316)
                      +.+++++|++.|.   .++..|. .|+||||+|+..  ++.+++++|++++.
T Consensus       474 ~~eive~LI~~GA---dIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga  522 (672)
T PHA02730        474 NIQFARRLLEYGA---SVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP  522 (672)
T ss_pred             CHHHHHHHHHCCC---CCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence            9999999999875   3677886 599999999984  78999999998763

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3e-33  Score=236.93  Aligned_cols=216  Identities=25%  Similarity=0.329  Sum_probs=179.6

Q ss_pred             HHHHHhcCChHHHHHHHHhcCC----ccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCcccc--------CCCCCCcH
Q 048248            8 LFRALRHGYTDKVREFARLNGN----RILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV--------PNHKSETP   75 (316)
Q Consensus         8 l~~a~~~g~~~~~~~ll~~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~--------~~~~g~tp   75 (316)
                      .+.|++.|.+..+..|+....+    .......+|.|||-+||++||.++|++|++.......+        ...+|.+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            4588999999999888765432    12234678999999999999999999999843222221        23578899


Q ss_pred             HHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCc
Q 048248           76 MHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL  155 (316)
Q Consensus        76 Lh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  155 (316)
                      |+.|+..|++++|+.|++.+++++          .......|||..|+-.|+.+++++|+++++++      ...+..|.
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN----------~tT~TNStPLraACfDG~leivKyLvE~gad~------~IanrhGh  151 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVN----------DTTRTNSTPLRAACFDGHLEIVKYLVEHGADP------EIANRHGH  151 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccc----------cccccCCccHHHHHhcchhHHHHHHHHcCCCC------cccccCCC
Confidence            999999999999999999875543          34567779999999999999999999988775      34566899


Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      |+||+||.+|+.+++++|++.+. ++|.++..|.|+||.+++.|+.++++.|++.+....  +|..|.|||..|+..|+.
T Consensus       152 TcLmIa~ykGh~~I~qyLle~gA-Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~--~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  152 TCLMIACYKGHVDIAQYLLEQGA-DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID--VDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             eeEEeeeccCchHHHHHHHHhCC-CcchhcccCchHHHhhhhcccHHHHHHHHhCCceee--ecCCCCchHHHHhhhcch
Confidence            99999999999999999998875 589999999999999999999999999998777653  688899999999999998


Q ss_pred             hHHHHHH
Q 048248          236 SILENLL  242 (316)
Q Consensus       236 ~iv~~Ll  242 (316)
                      ++|++|+
T Consensus       229 ~iVe~L~  235 (615)
T KOG0508|consen  229 DIVERLL  235 (615)
T ss_pred             HHHHHHh
Confidence            7777444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=9.9e-34  Score=248.96  Aligned_cols=211  Identities=25%  Similarity=0.345  Sum_probs=149.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcH
Q 048248           39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP  118 (316)
Q Consensus        39 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (316)
                      .+-++.|+..|..+.|+.|++.....++.+|.+|.|+||+|+.+++++++++|+..+++++..+         ..-+.||
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g---------G~l~stP  115 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG---------GVLGSTP  115 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC---------CCCCCCc
Confidence            3445666666666666666665233345566666677777777777777777776666544322         1345667


Q ss_pred             HHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHh
Q 048248          119 LHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAAL  198 (316)
Q Consensus       119 L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  198 (316)
                      ||+|++.|+..++..|+++|+++.      ..|..|+||+|+|+..|+...+.++|.++ .+++.+|.+|+||||+|+.+
T Consensus       116 LHWAar~G~~~vv~lLlqhGAdpt------~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  116 LHWAARNGHISVVDLLLQHGADPT------LKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             chHHHHcCcHHHHHHHHHcCCCCc------eecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHh
Confidence            777777777777777777766652      34557788888888888888888888776 45788888888888888888


Q ss_pred             CcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHc
Q 048248          199 GHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN  266 (316)
Q Consensus       199 g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  266 (316)
                      |+...+..|++-++......|..|.||||+|+..|+..++. |+..++...+..|.+|.||+.+|.+.
T Consensus       189 g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  189 GFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            88766777777666655444578888888888888888888 66666666678888888888888766

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=9.7e-32  Score=236.48  Aligned_cols=212  Identities=24%  Similarity=0.299  Sum_probs=180.2

Q ss_pred             CCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccC
Q 048248           71 KSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQ  150 (316)
Q Consensus        71 ~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  150 (316)
                      ...+.++.|+..|.++-++.+++..+..         ++..|++|.|+||+|+.+++.+++++|+++++++..     ..
T Consensus        43 ~~~~~~v~A~q~G~l~~v~~lve~~g~~---------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~-----~g  108 (600)
T KOG0509|consen   43 SSLDDIVKATQYGELETVKELVESEGES---------VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNA-----IG  108 (600)
T ss_pred             hhhhhhhhHhhcchHHHHHHHHhhcCcC---------CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccc-----cC
Confidence            3556789999999999999999873221         334588999999999999999999999999988742     22


Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      +.-+.||||+|+++|+..+|..|++.++ +++.+|.+|.||||.|++.|+.-++.+++.++ .+++.+|.+|+||||+|+
T Consensus       109 G~l~stPLHWAar~G~~~vv~lLlqhGA-dpt~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  109 GVLGSTPLHWAARNGHISVVDLLLQHGA-DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAA  186 (600)
T ss_pred             CCCCCCcchHHHHcCcHHHHHHHHHcCC-CCceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHH
Confidence            3467899999999999999999887765 58999999999999999999999999999887 667889999999999999


Q ss_pred             hcCCHhHHHHHHhhCCCCccccc-cCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHc
Q 048248          231 QNGQLSILENLLHSYPDSIEFID-NKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN  302 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~  302 (316)
                      .+|+...++.|+.-++. +..+| .+|.||||||+..|+..++. |+..++.  ..+..|.+|+||+.+|.+.
T Consensus       187 ykg~~~~v~~LL~f~a~-~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~--~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  187 YKGFALFVRRLLKFGAS-LLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGA--DLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcccHHHHHHHHhccc-ccccccccCCchHHHHHhcCCcceEe-hhhhcCC--cccccccCCCCHHHHHHHh
Confidence            99999988989976654 56666 89999999999999999999 5544433  2566788899999999776

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.8e-29  Score=226.22  Aligned_cols=290  Identities=15%  Similarity=0.108  Sum_probs=212.5

Q ss_pred             HHH-HHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHH-hCCHHHHHHHHhcCCCc--------------------
Q 048248            7 KLF-RALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAAR-FGHEILVMEILKHQSDL--------------------   64 (316)
Q Consensus         7 ~l~-~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~-~~~~~~v~~Ll~~~~~~--------------------   64 (316)
                      +++ .|+..|+.+.++.|+.. |++++..+..|+||+|+|+. .++.+++++|++.|++.                    
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~  152 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISK-GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEY  152 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHc-CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccc
Confidence            443 47889999999877765 78899988889999999965 69999999999998652                    


Q ss_pred             ---------------cccCCCCCCcHHHHHHHhC-------ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHH
Q 048248           65 ---------------VSVPNHKSETPMHVAARAG-------NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNA  122 (316)
Q Consensus        65 ---------------~~~~~~~g~tpLh~A~~~g-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a  122 (316)
                                     .+..+..|.||||+|+.++       +.++++.|+..++..          +..|..|.||||+|
T Consensus       153 ~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~----------~~~d~~g~t~l~~~  222 (631)
T PHA02792        153 YNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM----------RYYTYREHTTLYYY  222 (631)
T ss_pred             cchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc----------CccCCCCChHHHHH
Confidence                           1134556999999999999       899999999886653          34678899999999


Q ss_pred             HhcC--ChhHHHHHHhhCCCcc------------cccccc-cCCC-------CCch------------------------
Q 048248          123 VRKC--DGKMAFTMIKKDPEPI------------RYNNKA-KQGP-------NNLT------------------------  156 (316)
Q Consensus       123 ~~~~--~~~~~~~ll~~~~~~~------------~~~~~~-~~~~-------~~~t------------------------  156 (316)
                      +.++  +.++++.|+...-+-.            .+.+.+ .-|.       .|.+                        
T Consensus       223 ~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~  302 (631)
T PHA02792        223 VDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRY  302 (631)
T ss_pred             HHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence            9999  7888888877522110            000000 0000       0111                        


Q ss_pred             ------HHHHHHHhC--cHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCC--CcHH
Q 048248          157 ------LLHSAIIKS--QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNG--QSPL  226 (316)
Q Consensus       157 ------~lh~A~~~~--~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g--~tpL  226 (316)
                            .||.=...+  +.++++.|+..+... + + .....+++.|+..|..++++.|++.++ +++.+|.+|  .|||
T Consensus       303 ~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~-~-r-~~~~n~~~~Aa~~gn~eIVelLIs~GA-DIN~kD~~g~~~TpL  378 (631)
T PHA02792        303 TDSIQDLLSEYVSYHTVYINVIKCMIDEGATL-Y-R-FKHINKYFQKFDNRDPKVVEYILKNGN-VVVEDDDNIINIMPL  378 (631)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc-c-c-CCcchHHHHHHHcCCHHHHHHHHHcCC-chhhhcCCCCChhHH
Confidence                  122222333  456777777766542 1 2 235667999999999999999998764 456677765  6999


Q ss_pred             HHHHhcCCHh---HHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHH--
Q 048248          227 HLASQNGQLS---ILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI--  301 (316)
Q Consensus       227 h~A~~~g~~~---iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~--  301 (316)
                      |+|+.....+   ++++|++.+ ++++.+|..|+||||+|+..++.+++++|++.|.   .++.+|..|+||||+|+.  
T Consensus       379 h~A~~n~~~~v~~IlklLIs~G-ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA---DIN~kD~~G~TpL~~A~~~~  454 (631)
T PHA02792        379 FPTLSIHESDVLSILKLCKPYI-DDINKIDKHGRSILYYCIESHSVSLVEWLIDNGA---DINITTKYGSTCIGICVILA  454 (631)
T ss_pred             HHHHHhccHhHHHHHHHHHhcC-CccccccccCcchHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHHH
Confidence            9987766543   577778765 4579999999999999999999999999999864   478899999999999976  


Q ss_pred             -cC-------ChhHHHHHhhcC
Q 048248          302 -NN-------HFNIILVLARNM  315 (316)
Q Consensus       302 -~~-------~~~~~~~Ll~~~  315 (316)
                       .+       ..++++.|+.++
T Consensus       455 ~~~~~~i~~~~~~il~lLLs~~  476 (631)
T PHA02792        455 HACIPEIAELYIKILEIILSKL  476 (631)
T ss_pred             hcccHHHHHHHHHHHHHHHhcC
Confidence             22       245567766653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.8e-29  Score=212.99  Aligned_cols=198  Identities=25%  Similarity=0.289  Sum_probs=169.4

Q ss_pred             cCCCCCcHHHHHHhcCChhHHHHHHhhC-CCccccc--ccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccC
Q 048248          111 RDEEGNTPLHNAVRKCDGKMAFTMIKKD-PEPIRYN--NKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDER  187 (316)
Q Consensus       111 ~~~~g~t~L~~a~~~~~~~~~~~ll~~~-~~~~~~~--~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~  187 (316)
                      .+.+|.|||..|++.|+.+++++|+++. .++...-  .-......|-+||..|+..|++++|+.|+..+ +.+|.....
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g-a~VN~tT~T  116 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG-ASVNDTTRT  116 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc-Ccccccccc
Confidence            4678889999999999999999999953 2221000  01122336789999999999999999999887 668888888


Q ss_pred             CCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       188 g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                      ..|||..||.-|+++++++|+ ..+++++..|+.|.|.||+||..||.+|+++|++.+. +++.++..|.|+||.|++.|
T Consensus       117 NStPLraACfDG~leivKyLv-E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA-Dvn~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLV-EHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGA-DVNAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHH-HcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCC-CcchhcccCchHHHhhhhcc
Confidence            899999999999999999999 5566678899999999999999999999999998765 47999999999999999999


Q ss_pred             ChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          268 HADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       268 ~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      +.+++++|++++...    .+|..|.|||..|+..|+.++|+.|++.+
T Consensus       195 ~vdivq~Ll~~ga~i----~~d~~GmtPL~~Aa~tG~~~iVe~L~~~~  238 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKI----DVDGHGMTPLLLAAVTGHTDIVERLLQCE  238 (615)
T ss_pred             cHHHHHHHHhCCcee----eecCCCCchHHHHhhhcchHHHHHHhcCC
Confidence            999999999997643    35778999999999999999999998643

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.6e-28  Score=195.39  Aligned_cols=177  Identities=21%  Similarity=0.144  Sum_probs=147.7

Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC--cHHHHHHHHHhccccccccc-cCC
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS--QFVVMAKILEAKRDLINVRD-ERN  188 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~--~~~~~~~ll~~~~~~~~~~d-~~g  188 (316)
                      ...++||||.|++.++.+.++.|+...         +..+..|.||||+|+..+  +.++++.|++.+. +++.++ ..|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~---------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga-dvn~~~~~~g   87 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV---------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGA-DVNFKTRDNN   87 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh---------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCC-CCCccCCCCC
Confidence            456799999999999999999998742         224567899999999754  8899999998765 578886 489


Q ss_pred             CcHHHHHHHh---CcHHHHHHhhcCCCCcccccCCCCCcHHHHHHh--cCCHhHHHHHHhhCCCCccccccCCCcHHHH-
Q 048248          189 RNPLRYAAAL---GHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ--NGQLSILENLLHSYPDSIEFIDNKNRNILHL-  262 (316)
Q Consensus       189 ~tpLh~A~~~---g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~-  262 (316)
                      .||||+|+..   +..++++.|++. +.+++.+|..|.||||+|+.  .++.+++++|++.+ .+++.+|..|.||||. 
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~t~Lh~~  165 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNNNILYSY  165 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCCcHHHHH
Confidence            9999998764   467888888865 55677899999999999876  47899999999876 4578999999999996 


Q ss_pred             HHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcC
Q 048248          263 AAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINN  303 (316)
Q Consensus       263 A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~  303 (316)
                      |+..++.+++++|++.+.   .++.+|..|+||||+|..++
T Consensus       166 a~~~~~~~iv~~Ll~~Ga---di~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        166 ILFHSDKKIFDFLTSLGI---DINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHhcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHhhhh
Confidence            567889999999998864   46788999999999998765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=192.83  Aligned_cols=176  Identities=14%  Similarity=0.137  Sum_probs=145.4

Q ss_pred             CCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcC--ChhHHHHHHhhCCCccccccc
Q 048248           70 HKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC--DGKMAFTMIKKDPEPIRYNNK  147 (316)
Q Consensus        70 ~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~ll~~~~~~~~~~~~  147 (316)
                      ..++||||+|+..|+.+.++.|+..             ++..|..|.||||+|+..+  +.++++.|++.++++..    
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~-------------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~----   81 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF-------------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF----   81 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh-------------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc----
Confidence            4578999999999999999999853             2345789999999999754  78999999999877632    


Q ss_pred             ccCC-CCCchHHHHHHHh---CcHHHHHHHHHhccccccccccCCCcHHHHHHH--hCcHHHHHHhhcCCCCcccccCCC
Q 048248          148 AKQG-PNNLTLLHSAIIK---SQFVVMAKILEAKRDLINVRDERNRNPLRYAAA--LGHFKIACRLSDEDDSLVYQHDCN  221 (316)
Q Consensus       148 ~~~~-~~~~t~lh~A~~~---~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~~~~~ll~~~~~~~~~~d~~  221 (316)
                        .+ ..|.||||+|+..   ++.++++.|+..+ .+++.+|.+|.||||+|+.  .++.++++.|++.+ .+++.+|.+
T Consensus        82 --~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g-adin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~  157 (209)
T PHA02859         82 --KTRDNNLSALHHYLSFNKNVEPEILKILIDSG-SSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFD  157 (209)
T ss_pred             --cCCCCCCCHHHHHHHhCccccHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCC
Confidence              22 3689999998764   4688888888665 5689999999999999986  45789999998666 456678999


Q ss_pred             CCcHHHH-HHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          222 GQSPLHL-ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       222 g~tpLh~-A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                      |.||||. |+..++.+++++|++.+. +++.+|..|+||||+|+.++
T Consensus       158 g~t~Lh~~a~~~~~~~iv~~Ll~~Ga-di~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        158 NNNILYSYILFHSDKKIFDFLTSLGI-DINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCcHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHhhhh
Confidence            9999995 567899999999998754 57999999999999998763

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.4e-26  Score=207.14  Aligned_cols=274  Identities=12%  Similarity=0.023  Sum_probs=203.3

Q ss_pred             CccccccCCCChHHHHHHH-hCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH-hCChhHHHHhhccCCCCCC--CCc-
Q 048248           29 NRILGTSQNGDTALHIAAR-FGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR-AGNFGAAQIFMRPHGNGNN--TGT-  103 (316)
Q Consensus        29 ~~~~~~~~~g~t~Lh~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~-~g~~~~~~~l~~~~~~~~~--~~~-  103 (316)
                      ..++..+-+|.+++|+-+. .|+.++|++|+.+|++. +..+..|.||+|+|+. .++.+++++|++.+++.+.  ..+ 
T Consensus        62 ~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdv-N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         62 SSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEI-NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             hCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCc-ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            3445566788899988765 57899999999999875 4566678999999976 5999999999999875321  111 


Q ss_pred             -----------------------chhhhhccCCCCCcHHHHHHhcC-------ChhHHHHHHhhCCCcccccccccCCCC
Q 048248          104 -----------------------FDDILRKRDEEGNTPLHNAVRKC-------DGKMAFTMIKKDPEPIRYNNKAKQGPN  153 (316)
Q Consensus       104 -----------------------~~~~~~~~~~~g~t~L~~a~~~~-------~~~~~~~ll~~~~~~~~~~~~~~~~~~  153 (316)
                                             .+..++..|..|.||||+|+..+       +.++++.|+.++.+..      ..+..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~------~~d~~  214 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR------YYTYR  214 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC------ccCCC
Confidence                                   11244567888999999999988       7999999999987753      34667


Q ss_pred             CchHHHHHHHhC--cHHHHHHHHHhcccccc------------c------cc-------cCCCcH---------------
Q 048248          154 NLTLLHSAIIKS--QFVVMAKILEAKRDLIN------------V------RD-------ERNRNP---------------  191 (316)
Q Consensus       154 ~~t~lh~A~~~~--~~~~~~~ll~~~~~~~~------------~------~d-------~~g~tp---------------  191 (316)
                      |.||||+|+...  ..++++.|+...-....            .      .|       -.|.+|               
T Consensus       215 g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~  294 (631)
T PHA02792        215 EHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNII  294 (631)
T ss_pred             CChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhH
Confidence            999999999998  78888888763210000            0      00       012332               


Q ss_pred             ---------------HHHHHHhC--cHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCcccccc
Q 048248          192 ---------------LRYAAALG--HFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDN  254 (316)
Q Consensus       192 ---------------Lh~A~~~g--~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  254 (316)
                                     ||.=.+.+  +.++++.|++.+....   ......+++.|+..|+.++|++|+++| ++++.+|.
T Consensus       295 ~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~G-ADIN~kD~  370 (631)
T PHA02792        295 ISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNG-NVVVEDDD  370 (631)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcC-CchhhhcC
Confidence                           11111223  3566777887776542   223567899999999999999999886 45788887


Q ss_pred             CC--CcHHHHHHHcCChh---HHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          255 KN--RNILHLAAQNGHAD---VVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       255 ~g--~tpLh~A~~~g~~~---~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      .|  .||||+|+.....+   ++++|++.+.   .+|.+|..|+||||+|++.++.+++++|+++++
T Consensus       371 ~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA---DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA  434 (631)
T PHA02792        371 NIINIMPLFPTLSIHESDVLSILKLCKPYID---DINKIDKHGRSILYYCIESHSVSLVEWLIDNGA  434 (631)
T ss_pred             CCCChhHHHHHHHhccHhHHHHHHHHHhcCC---ccccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence            75  69999988776654   5778888764   478899999999999999999999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.7e-26  Score=197.85  Aligned_cols=212  Identities=13%  Similarity=0.013  Sum_probs=145.5

Q ss_pred             ChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCcc-----ccCCCCCCcHHHHHHH--hCChhHH
Q 048248           16 YTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLV-----SVPNHKSETPMHVAAR--AGNFGAA   88 (316)
Q Consensus        16 ~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~g~tpLh~A~~--~g~~~~~   88 (316)
                      ..+.+-+++...|..++..+.+|     +|+..+..+++++|+..+.+..     -..+..++|+||+++.  .|+.+++
T Consensus        60 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         60 PVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence            34455455555566666666666     7777788888888888777633     0255667888888888  7788888


Q ss_pred             HHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHH
Q 048248           89 QIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFV  168 (316)
Q Consensus        89 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~  168 (316)
                      ++|+..|++.+.            .++.||||.|+..++.++++.|+..|....+.......+..+.|++|.|...++.+
T Consensus       135 ~~LI~~GADIn~------------~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~e  202 (437)
T PHA02795        135 DFMVDHGAVIYK------------IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLE  202 (437)
T ss_pred             HHHHHCCCCCCC------------CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHH
Confidence            888877665321            24467888888888888888888877543222111111234667888888777778


Q ss_pred             HHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcC--------CHhHHHH
Q 048248          169 VMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG--------QLSILEN  240 (316)
Q Consensus       169 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g--------~~~iv~~  240 (316)
                      +++.|+..+ ++++.+|..|.||||+|+..|+.++++.|++.+ ++++.+|..|+||||+|+..|        +.+++++
T Consensus       203 Ive~LIs~G-ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvel  280 (437)
T PHA02795        203 IYKLCIPYI-EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEI  280 (437)
T ss_pred             HHHHHHhCc-CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHH
Confidence            877777655 457788888888888888888888877777554 455667778888888888777        3578887


Q ss_pred             HHhhCC
Q 048248          241 LLHSYP  246 (316)
Q Consensus       241 Ll~~~~  246 (316)
                      |+++++
T Consensus       281 LL~~ga  286 (437)
T PHA02795        281 LLREPL  286 (437)
T ss_pred             HHhCCC
Confidence            776554

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=8.1e-26  Score=197.70  Aligned_cols=188  Identities=14%  Similarity=0.052  Sum_probs=155.8

Q ss_pred             HHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHH--hCcHHHHHHHHHhccccccccccCCCcHHHHHHHh
Q 048248          121 NAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII--KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAAL  198 (316)
Q Consensus       121 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~--~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  198 (316)
                      +|+..+..+++++|+..+..+.-....-..+.++.|+||.++.  .|+.++++.|++.+++ ++..  ++.||+|.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD-In~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV-IYKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC-CCCC--CCCCHHHHHHHc
Confidence            8888899999999999987753111111245578899999998  8999999999977754 6653  568999999999


Q ss_pred             CcHHHHHHhhcCCCCccccc-----CCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHH
Q 048248          199 GHFKIACRLSDEDDSLVYQH-----DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV  273 (316)
Q Consensus       199 g~~~~~~~ll~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~  273 (316)
                      ++.++++.|+..+..+.+..     +..|.||+|.|+..++.+++++|++.+ ++++.+|..|+||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999998876544332     134789999999999999999999876 457999999999999999999999999


Q ss_pred             HHhcCcccccccccCCCCCCcHHHHHHHcCC--------hhHHHHHhhcC
Q 048248          274 FILKQPEVEDLINSSDVDGNTPLHLAAINNH--------FNIILVLARNM  315 (316)
Q Consensus       274 ~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~--------~~~~~~Ll~~~  315 (316)
                      +|++.|.   .++.+|..|.||||+|+..|+        .+++++|++++
T Consensus       239 lLL~~GA---dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        239 WLLENGA---NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             HHHHCCC---CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            9998874   478889999999999999984        68999999875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=8.7e-26  Score=216.91  Aligned_cols=254  Identities=13%  Similarity=0.036  Sum_probs=175.9

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhc-CCccccccCCCChHHH-HHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 048248            4 VDHKLFRALRHGYTDKVREFARLN-GNRILGTSQNGDTALH-IAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR   81 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~Lh-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   81 (316)
                      .+.+++.|++.|+.+.++.++... +.+++..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.|+.
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh
Confidence            467899999999999999998652 4567788899999999 8888889999999998775     45679999999987


Q ss_pred             hCChh----HHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccc--------ccc
Q 048248           82 AGNFG----AAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNN--------KAK  149 (316)
Q Consensus        82 ~g~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~--------~~~  149 (316)
                      . ..+    ++..+..............+........|.||||+|+..++.++++.|++.|+++.....        ...
T Consensus        92 ~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        92 E-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             c-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence            2 223    333333322111000000000111235799999999999999999999999876642110        001


Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCc-----H----HHHHHhh---cCCCCc---
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGH-----F----KIACRLS---DEDDSL---  214 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~----~~~~~ll---~~~~~~---  214 (316)
                      ....|.||||.|+..|+.++++.|++.+. +++.+|+.|+||||+|+..+.     .    .+...++   ......   
T Consensus       171 ~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga-din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el  249 (743)
T TIGR00870       171 SFYHGESPLNAAACLGSPSIVALLSEDPA-DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKEL  249 (743)
T ss_pred             cccccccHHHHHHHhCCHHHHHHHhcCCc-chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhh
Confidence            12357899999999999999988887654 689999999999999998762     1    1222222   222111   


Q ss_pred             ccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHH
Q 048248          215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       215 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  265 (316)
                      .+..|.+|.||||+|+..|+.++++.|++.... ..........|.+.+..
T Consensus       250 ~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~-~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       250 EVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK-QKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             hhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh-cceeeccCcchHhHhhh
Confidence            145688999999999999999999999974321 12233455666665554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-26  Score=213.70  Aligned_cols=302  Identities=19%  Similarity=0.252  Sum_probs=216.3

Q ss_pred             CCcccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH
Q 048248            1 ESTVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAA   80 (316)
Q Consensus         1 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   80 (316)
                      |.+.+.+|-.||..|+-+.++.++ ..|..++.+|+.|.+||.+|+-.||..+|+.|+.+-+.+....|..+.|+|.+||
T Consensus       754 e~n~~t~LT~acaggh~e~vellv-~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLV-VRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHH-HhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            455788999999999999995555 5567789999999999999999999999999999988887788899999999999


Q ss_pred             HhCChhHHHHhhccCCCCCCC-------------Ccchhhhhc------------cCCCCCcHHHHHHhcCChhHHHHHH
Q 048248           81 RAGNFGAAQIFMRPHGNGNNT-------------GTFDDILRK------------RDEEGNTPLHNAVRKCDGKMAFTMI  135 (316)
Q Consensus        81 ~~g~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~------------~~~~g~t~L~~a~~~~~~~~~~~ll  135 (316)
                      ..|..+++++|+..+++..-.             +++.++++.            -.+-|-+||+.|...++...++.|+
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            999999999999876543210             011111110            1223444555555555555555555


Q ss_pred             hhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcc
Q 048248          136 KKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV  215 (316)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~  215 (316)
                      +.+.++..    +. ..+-.|.|-+|+..|..+++..||... ..+..+-+.|.|||+-++..|+.++-..|+..+++..
T Consensus       913 ~~gsdiNa----qI-eTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~AsgGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  913 QPGSDINA----QI-ETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             cccchhcc----cc-ccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchhhcCCccccchhhhhcccccc
Confidence            54433211    11 112346666666666666665555443 3466677778888888888888777666666554432


Q ss_pred             cccCCC-CCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCc
Q 048248          216 YQHDCN-GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNT  294 (316)
Q Consensus       216 ~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t  294 (316)
                      ...-.+ --|+|-+++..||...|+.|+. +.+.++..+++|.|+|..|+..|+..++.+|++...   +++..|..-.|
T Consensus       987 asPvp~T~dtalti~a~kGh~kfv~~lln-~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a---d~d~qdnr~~S 1062 (2131)
T KOG4369|consen  987 ASPVPNTWDTALTIPANKGHTKFVPKLLN-GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVA---DADQQDNRTNS 1062 (2131)
T ss_pred             cCCCCCcCCccceeecCCCchhhhHHhhC-CccceecccCCCCcccchhccCCccccchHHhhccc---Chhhhhccccc
Confidence            211122 2377888888888899888884 455678899999999999999999999999998764   35677888889


Q ss_pred             HHHHHHHcCChhHHHHHhh
Q 048248          295 PLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       295 ~L~~A~~~~~~~~~~~Ll~  313 (316)
                      +++-|.+.||++||++.+.
T Consensus      1063 ~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1063 RTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             ccHHHHHhchhheeccccC
Confidence            9999999999999998764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=2.1e-25  Score=214.31  Aligned_cols=92  Identities=26%  Similarity=0.273  Sum_probs=51.7

Q ss_pred             CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC---------ChhHHHHHhcCccccc----cccc
Q 048248          221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG---------HADVVVFILKQPEVED----LINS  287 (316)
Q Consensus       221 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g---------~~~~~~~Ll~~~~~~~----~~~~  287 (316)
                      .|.||||.|+..|+.+++++|++++ ++++.+|..|+||||+|+..+         ...+..+++..+....    ..+.
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i  252 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI  252 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhh
Confidence            4666666666666666666666543 345666666666666666654         1223333433322111    1134


Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          288 SDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       288 ~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      .|.+|.||||+|+..|+.+++++|++
T Consensus       253 ~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       253 LNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             cCCCCCCchhhhhhcCCccHHHHHHH
Confidence            45666666666666666666666665

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=2e-25  Score=172.06  Aligned_cols=249  Identities=19%  Similarity=0.195  Sum_probs=160.3

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      -..++.+...|..+..+.+.......   ++..|..-+--+.+.++.+++...+...+..+.-++.+|+..++.++-.++
T Consensus        32 ~a~~~~~~~m~~t~p~~~l~~~~s~~---~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s  108 (296)
T KOG0502|consen   32 IAELFEQVEMGTTEPRCALTAEISAL---RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGS  108 (296)
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHH---HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCC
Confidence            34556666666666655554433222   234677777777788887777777766655555567778888888888887


Q ss_pred             hhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh
Q 048248           85 FGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK  164 (316)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~  164 (316)
                      ...+...+..+..++.          .+.-+++|+.+++.....+....+...        -.+..|..|+|||++|+.+
T Consensus       109 ~~k~sttltN~~rgne----------vs~~p~s~~slsVhql~L~~~~~~~~n--------~VN~~De~GfTpLiWAaa~  170 (296)
T KOG0502|consen  109 VDKVSTTLTNGARGNE----------VSLMPWSPLSLSVHQLHLDVVDLLVNN--------KVNACDEFGFTPLIWAAAK  170 (296)
T ss_pred             cceeeeeecccccCCc----------cccccCChhhHHHHHHHHHHHHHHhhc--------cccCccccCchHhHHHHhc
Confidence            7777777766554432          345667777777765544433332221        1233456677777777777


Q ss_pred             CcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhh
Q 048248          165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS  244 (316)
Q Consensus       165 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  244 (316)
                      |++.+|+.||+.+. +++..-++..++|.+|+..|+.++++.|+.+.. ++|..|-+|-|||.+|++.+|.+|++.|++.
T Consensus       171 G~i~vV~fLL~~GA-dp~~lgk~resALsLAt~ggytdiV~lLL~r~v-dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  171 GHIPVVQFLLNSGA-DPDALGKYRESALSLATRGGYTDIVELLLTREV-DVNVYDWNGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             CchHHHHHHHHcCC-ChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCC-CcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence            77777777666554 466666677777777777777777776665544 3456677777777777777777777777765


Q ss_pred             CCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       245 ~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      +.. ++..+..|.+++..|+..|+. +|+..++.
T Consensus       249 GAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  249 GAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             CCC-cccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            443 567777777777777777776 55555543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.6e-25  Score=172.57  Aligned_cols=233  Identities=23%  Similarity=0.208  Sum_probs=192.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF   85 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~   85 (316)
                      +.+-.+...|+.+..+....-....+..++..|++++|.++-+++.+.+..++.++..- +..+..+++|+.+++.+-++
T Consensus        64 ~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L  142 (296)
T KOG0502|consen   64 SLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHL  142 (296)
T ss_pred             cccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHH
Confidence            33445667788888877665555556778888999999999999999999999887764 44667899999999999888


Q ss_pred             hHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC
Q 048248           86 GAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS  165 (316)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~  165 (316)
                      +.+..+.+.            .++..|+.|.|||.+|++.|...++++|+..|+++.      .-.+...|+|++|++.|
T Consensus       143 ~~~~~~~~n------------~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~------~lgk~resALsLAt~gg  204 (296)
T KOG0502|consen  143 DVVDLLVNN------------KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD------ALGKYRESALSLATRGG  204 (296)
T ss_pred             HHHHHHhhc------------cccCccccCchHhHHHHhcCchHHHHHHHHcCCChh------hhhhhhhhhHhHHhcCC
Confidence            877776653            366779999999999999999999999999988763      22445679999999999


Q ss_pred             cHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhC
Q 048248          166 QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSY  245 (316)
Q Consensus       166 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  245 (316)
                      ..++|+.||.+..+ +|.-|-+|.|||-||+..++.++++.|+..++ ++++.+..|++++-.|+..|+. +|+..+++.
T Consensus       205 ytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA-d~t~e~dsGy~~mdlAValGyr-~Vqqvie~h  281 (296)
T KOG0502|consen  205 YTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA-DVTQEDDSGYWIMDLAVALGYR-IVQQVIEKH  281 (296)
T ss_pred             hHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCC-CcccccccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence            99999999988764 89999999999999999999999999997765 4677899999999999999998 888888875


Q ss_pred             CCCccccccCCCcHHH
Q 048248          246 PDSIEFIDNKNRNILH  261 (316)
Q Consensus       246 ~~~~~~~d~~g~tpLh  261 (316)
                      .. ....|..-++|+|
T Consensus       282 ~l-kl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  282 AL-KLCQDSEKRTPLH  296 (296)
T ss_pred             HH-HHhhcccCCCCCC
Confidence            43 3556666666664

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.8e-23  Score=202.22  Aligned_cols=174  Identities=18%  Similarity=0.214  Sum_probs=119.5

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHH
Q 048248          114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR  193 (316)
Q Consensus       114 ~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  193 (316)
                      ++.++|+.|+..|+.++++.|+..+.++      +..+..|.||||+|+..|+.++++.|+..+ .+++.+|.+|+||||
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~------n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-adin~~d~~G~TpL~  596 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP------DIGDSKGRTPLHIAASKGYEDCVLVLLKHA-CNVHIRDANGNTALW  596 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcChHHHHHHHHhcC-CCCCCcCCCCCCHHH
Confidence            4556777777777777777777766553      234556777777777777777777766654 446777777777777


Q ss_pred             HHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHH
Q 048248          194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV  273 (316)
Q Consensus       194 ~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~  273 (316)
                      +|+..|+.++++.|+..... .  ....|.+|||.|+..|+.++++.|++.+. +++.+|.+|+||||+|+..|+.++++
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga-din~~d~~G~TpLh~A~~~g~~~iv~  672 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLKQGL-NVDSEDHQGATALQVAMAEDHVDMVR  672 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            77777777777777654332 1  22345677777777777777777776644 45777777777777777777777777


Q ss_pred             HHhcCcccccccccCCCCC-CcHHHHHHH
Q 048248          274 FILKQPEVEDLINSSDVDG-NTPLHLAAI  301 (316)
Q Consensus       274 ~Ll~~~~~~~~~~~~d~~g-~t~L~~A~~  301 (316)
                      +|++.+..   ++..|..| .||++++..
T Consensus       673 ~Ll~~GAd---v~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        673 LLIMNGAD---VDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHHcCCC---CCCCCCCCCCCHHHHHHH
Confidence            77776542   45556666 777776644

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.2e-23  Score=203.31  Aligned_cols=158  Identities=24%  Similarity=0.260  Sum_probs=139.2

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      +....++||.|+..|+.+.++.|+..+. +++.+|..|+||||+|+..|+.++++.|+.. +.+++.+|.+|+||||+|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~-d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKL-DPDIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHH
Confidence            3356799999999999999999997764 5899999999999999999999999988875 5567789999999999999


Q ss_pred             hcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHH
Q 048248          231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILV  310 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  310 (316)
                      ..|+.+++++|+..+..   .....|.+|||+|+..|+.+++++|++.+.   .++.+|.+|+||||+|+..|+.+++++
T Consensus       600 ~~g~~~iv~~L~~~~~~---~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga---din~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        600 SAKHHKIFRILYHFASI---SDPHAAGDLLCTAAKRNDLTAMKELLKQGL---NVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HhCCHHHHHHHHhcCcc---cCcccCchHHHHHHHhCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            99999999999965432   234568899999999999999999998864   478899999999999999999999999


Q ss_pred             HhhcCC
Q 048248          311 LARNMS  316 (316)
Q Consensus       311 Ll~~~~  316 (316)
                      |+++++
T Consensus       674 Ll~~GA  679 (823)
T PLN03192        674 LIMNGA  679 (823)
T ss_pred             HHHcCC
Confidence            999764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=7.9e-24  Score=189.32  Aligned_cols=242  Identities=22%  Similarity=0.249  Sum_probs=177.8

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCC------------ccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGN------------RILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHK   71 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~------------~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   71 (316)
                      ++..+..|++.|+.+.+..++...+.            ..+..|.+|.|+||.||..|+..+++.|++..+-. .+.+..
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~k   81 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTK   81 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhcc
Confidence            45678899999999999888864321            23445779999999999999999999999987754 456689


Q ss_pred             CCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCC
Q 048248           72 SETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG  151 (316)
Q Consensus        72 g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  151 (316)
                      |.+|||+|++.|+.+++++++....          .++.....|.||||.|+++|+.+++.+|+..+.+...      .+
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d----------~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i------~n  145 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTD----------ILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFI------RN  145 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhccc----------CCCcccccCcCccchhhhhcchHHHHHHHhcCCCccc------cC
Confidence            9999999999999999999997542          2445577899999999999999999999999877643      35


Q ss_pred             CCCchHHHHHHHhCcHHHHHHHHHhcccc-------ccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCc
Q 048248          152 PNNLTLLHSAIIKSQFVVMAKILEAKRDL-------INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS  224 (316)
Q Consensus       152 ~~~~t~lh~A~~~~~~~~~~~ll~~~~~~-------~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~t  224 (316)
                      +++.|+|-+|+..|..++++.|+...-..       -..++-.+-+|||.|++.|+.++++.|+..+-+ ++.....| |
T Consensus       146 ns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-t  223 (854)
T KOG0507|consen  146 NSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-T  223 (854)
T ss_pred             cccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-h
Confidence            56789999999999999998888752100       011233456667777777777776666654433 33333334 6


Q ss_pred             HHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHH
Q 048248          225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       225 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  265 (316)
                      +||-|+..|..++|.+|++.+.. ...++.+|+|.|.+-..
T Consensus       224 alheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  224 ALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIID  263 (854)
T ss_pred             hhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHh
Confidence            77777777777777777765433 46666677777655443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=5.8e-24  Score=175.39  Aligned_cols=163  Identities=20%  Similarity=0.292  Sum_probs=98.1

Q ss_pred             hhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh-----CcHHHHHHHHHhcccccc
Q 048248          108 LRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK-----SQFVVMAKILEAKRDLIN  182 (316)
Q Consensus       108 ~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~-----~~~~~~~~ll~~~~~~~~  182 (316)
                      ++..|.+|+|+|||++.+.+.+++..|++.+...+     ..+++-|+||+++++..     .+..+|..|...+  ++|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~V-----D~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg--nVN  333 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDV-----DQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG--DVN  333 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccc-----cccccccccHHHHHHHHhhcchhhHHHHHHHHhcc--Ccc
Confidence            34456666666666666666666666666654433     23444566666665532     3345555555443  245


Q ss_pred             cccc-CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHH
Q 048248          183 VRDE-RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH  261 (316)
Q Consensus       183 ~~d~-~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  261 (316)
                      .+-+ .|.|+|++|+.+|..++++.||.. ++++|..|.+|.|+|++||..||.||+++||....+++...|.+|.|+|.
T Consensus       334 aKAsQ~gQTALMLAVSHGr~d~vk~LLac-gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~  412 (452)
T KOG0514|consen  334 AKASQHGQTALMLAVSHGRVDMVKALLAC-GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALS  412 (452)
T ss_pred             hhhhhhcchhhhhhhhcCcHHHHHHHHHc-cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhh
Confidence            5433 466666666666666666666643 33455566666666666666666666666666655566666666666666


Q ss_pred             HHHHcCChhHHHHHhcC
Q 048248          262 LAAQNGHADVVVFILKQ  278 (316)
Q Consensus       262 ~A~~~g~~~~~~~Ll~~  278 (316)
                      +|...|+.||..+|+.+
T Consensus       413 IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  413 IALEAGHREIAVMLYAH  429 (452)
T ss_pred             hHHhcCchHHHHHHHHH
Confidence            66666666666666644

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=6.4e-24  Score=175.15  Aligned_cols=162  Identities=26%  Similarity=0.376  Sum_probs=141.0

Q ss_pred             ccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHH-----hCcHHHHHHhhcCCCCcccccCCCC
Q 048248          148 AKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAA-----LGHFKIACRLSDEDDSLVYQHDCNG  222 (316)
Q Consensus       148 ~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~-----~g~~~~~~~ll~~~~~~~~~~d~~g  222 (316)
                      +..|.+|.|+||||+.++++++|+.||+.+.++++.+|+-|.||+++|+-     ..+.++|..|+..+.... ....-|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNa-KAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNA-KASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcch-hhhhhc
Confidence            34577899999999999999999999999999999999999999999875     244678888886654332 234579


Q ss_pred             CcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHc
Q 048248          223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN  302 (316)
Q Consensus       223 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~  302 (316)
                      +|+|++|+..|..++|+.||..+ +++|..|.+|.|+|+.||+.||.+++.+||..+.+.  +...|.+|.|+|.+|-..
T Consensus       341 QTALMLAVSHGr~d~vk~LLacg-AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd--~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACG-ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD--ISLTDVDGSTALSIALEA  417 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHcc-CCCccccCCccHHHhhhhhhChHHHHHHHhccCccc--ceeecCCCchhhhhHHhc
Confidence            99999999999999999999765 568999999999999999999999999999998765  567899999999999999


Q ss_pred             CChhHHHHHhh
Q 048248          303 NHFNIILVLAR  313 (316)
Q Consensus       303 ~~~~~~~~Ll~  313 (316)
                      ||.+|.-+|--
T Consensus       418 gh~eIa~mlYa  428 (452)
T KOG0514|consen  418 GHREIAVMLYA  428 (452)
T ss_pred             CchHHHHHHHH
Confidence            99999877743

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=3.6e-23  Score=185.17  Aligned_cols=240  Identities=22%  Similarity=0.241  Sum_probs=194.8

Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCC------------CccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhh
Q 048248           40 TALHIAARFGHEILVMEILKHQS------------DLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDI  107 (316)
Q Consensus        40 t~Lh~A~~~~~~~~v~~Ll~~~~------------~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~  107 (316)
                      +-|--||+.|..+.|..||+...            ...+..|.+|.|.||.|+..|+..++++|++..+          .
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea----------~   74 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA----------L   74 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh----------h
Confidence            44667899999999999997521            1234567789999999999999999999997533          2


Q ss_pred             hhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccC
Q 048248          108 LRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDER  187 (316)
Q Consensus       108 ~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~  187 (316)
                      +...|..|++|||+|++.|+.++++.++.++...      +.....|.||||.|+..|+++++.+|+..+. +.-.+|+.
T Consensus        75 ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~------na~~~e~~tplhlaaqhgh~dvv~~Ll~~~a-dp~i~nns  147 (854)
T KOG0507|consen   75 LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL------NAVNIENETPLHLAAQHGHLEVVFYLLKKNA-DPFIRNNS  147 (854)
T ss_pred             hhhhhccCcceEEehhhcCcchHHHHHHhcccCC------CcccccCcCccchhhhhcchHHHHHHHhcCC-CccccCcc
Confidence            4456789999999999999999999999987332      3455578999999999999999999987765 47889999


Q ss_pred             CCcHHHHHHHhCcHHHHHHhhcCCCCc-------ccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHH
Q 048248          188 NRNPLRYAAALGHFKIACRLSDEDDSL-------VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNIL  260 (316)
Q Consensus       188 g~tpLh~A~~~g~~~~~~~ll~~~~~~-------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  260 (316)
                      +.|+|-.|++-|..+++..|+...-..       ...++-.+.+|||+|+++||.++++.|++.+- +++....+ .|+|
T Consensus       148 ~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~-din~~t~~-gtal  225 (854)
T KOG0507|consen  148 KETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF-DINYTTED-GTAL  225 (854)
T ss_pred             cccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC-Cccccccc-chhh
Confidence            999999999999999888887652111       12355678899999999999999999998754 45766655 4899


Q ss_pred             HHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHH
Q 048248          261 HLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI  301 (316)
Q Consensus       261 h~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~  301 (316)
                      |-|+-.|..++|.+|++.+..   .+.+|.+|+|+|.+-..
T Consensus       226 heaalcgk~evvr~ll~~gin---~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  226 HEAALCGKAEVVRFLLEIGIN---THIKNQHGQTALDIIID  263 (854)
T ss_pred             hhHhhcCcchhhhHHHhhccc---cccccccchHHHHHHHh
Confidence            999999999999999988643   56788999999876543

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=5.9e-23  Score=161.67  Aligned_cols=128  Identities=23%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             ccccCCCcHHHHHHHhCcHHHHHHhhcC-----CCCcccccCCCCCcHHHHHHhcCC----HhHHHHHHhhCCCCccccc
Q 048248          183 VRDERNRNPLRYAAALGHFKIACRLSDE-----DDSLVYQHDCNGQSPLHLASQNGQ----LSILENLLHSYPDSIEFID  253 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~g~~~~~~~ll~~-----~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d  253 (316)
                      .+|..|.||||+|++.|+.++++.|+..     .+.+.+.+|..|+||||+|+..|+    .+++++|++.+ .+++.++
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-adin~~~   94 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-ADINAQE   94 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCCC
Confidence            3455566666666666665555554321     123344555556666666666655    35555555443 2345555


Q ss_pred             c-CCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          254 N-KNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       254 ~-~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      . .|+||||+|+..++.+++++|+....  ..++..|.+|+||||+|+..++.+++++|++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g--~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPG--IDLHFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            3 56666666666666666666654311  1244455556666666666666666666554

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-23  Score=192.54  Aligned_cols=262  Identities=20%  Similarity=0.207  Sum_probs=217.0

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCC
Q 048248           36 QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEG  115 (316)
Q Consensus        36 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  115 (316)
                      .+-.|+|..||..||.++|..|+..|++. .-+|..|.+||.+|+..|+..+++.|+..+++..         ...|+.+
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~ve---------aQsdrtk  824 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE---------AQSDRTK  824 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhh---------hhccccc
Confidence            46689999999999999999999999874 5688999999999999999999999998776532         3468999


Q ss_pred             CcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccc--ccCCCcHHH
Q 048248          116 NTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR--DERNRNPLR  193 (316)
Q Consensus       116 ~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~--d~~g~tpLh  193 (316)
                      .|+|.+|+..|..++++.|+..+....      .++...+|||.+|..-|..+++..||..+. .+|.+  .+.|-.||+
T Consensus       825 dt~lSlacsggr~~vvelLl~~ganke------hrnvsDytPlsla~Sggy~~iI~~llS~Gs-eInSrtgSklgisPLm  897 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKE------HRNVSDYTPLSLARSGGYTKIIHALLSSGS-EINSRTGSKLGISPLM  897 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhcccc------ccchhhcCchhhhcCcchHHHHHHHhhccc-ccccccccccCcchhh
Confidence            999999999999999999999876542      234456799999999999999988887664 46655  457999999


Q ss_pred             HHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHH
Q 048248          194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV  273 (316)
Q Consensus       194 ~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~  273 (316)
                      +|...|+...+..|++.+.++.-..--+-+|+|-+|+..|..++|..||... ..+..+-+.|-|||+-++..|.+|+-.
T Consensus       898 latmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~AsgGyvdvg~  976 (2131)
T KOG4369|consen  898 LATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEMASGGYVDVGN  976 (2131)
T ss_pred             hhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchhhcCCccccch
Confidence            9999999998888888776665444456679999999999999999888754 446788889999999999999999999


Q ss_pred             HHhcCccccc--------------------------------ccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          274 FILKQPEVED--------------------------------LINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       274 ~Ll~~~~~~~--------------------------------~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      +|+..|....                                .+..+|++|.|+|-+|+..|+...|.+|++..
T Consensus       977 ~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ 1050 (2131)
T KOG4369|consen  977 LLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSV 1050 (2131)
T ss_pred             hhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcc
Confidence            9987653211                                13456889999999999999999999998754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-22  Score=174.98  Aligned_cols=228  Identities=22%  Similarity=0.257  Sum_probs=169.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF   85 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~   85 (316)
                      -.++.|+..|+.+.++.|+..+ ..++..+.+|.|+||-+|.-.+.+||++|++.++++ +..|..||||||.|+..|+.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~g-a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRG-ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHHhccccccHHHHHHHhccC-CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            3567899999999999998766 456888999999999999999999999999999885 66889999999999999999


Q ss_pred             hHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhC
Q 048248           86 GAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS  165 (316)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~  165 (316)
                      .++.+|+..+++          +...+.+|..|+-.+...-..+++...+...               |.+  .-|++..
T Consensus       120 ~i~~~li~~gA~----------~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~---------------gi~--iea~R~~  172 (527)
T KOG0505|consen  120 NIVEYLIQHGAN----------LLAVNSDGNMPYDLAEDEATLDVLETEMARQ---------------GID--IEAARKA  172 (527)
T ss_pred             HHHHHHHHhhhh----------hhhccCCCCCccccccCcchhHHHHHHHHHh---------------ccc--HHHHhhh
Confidence            999999987654          2234566666665554333333333322221               111  1111111


Q ss_pred             c----HHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHH
Q 048248          166 Q----FVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL  241 (316)
Q Consensus       166 ~----~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  241 (316)
                      -    +.-+...+. .+...++++..|.|.||.|+..|+.++...|+..+.. ++.+|.+||||||.|+..|+.+++++|
T Consensus       173 ~e~~ml~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL  250 (527)
T KOG0505|consen  173 EEQTMLDDARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELL  250 (527)
T ss_pred             hHHHHHHHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHH
Confidence            1    111223333 3445677777799999999999999988888766554 567899999999999999999999988


Q ss_pred             HhhCCCCccccccCCCcHHHHHHH
Q 048248          242 LHSYPDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       242 l~~~~~~~~~~d~~g~tpLh~A~~  265 (316)
                      +++++. .+.+...|.||+-+|..
T Consensus       251 ~~~ga~-~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  251 VEHGAD-MDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHhhcc-cchhhhcCCCCccchhh
Confidence            877654 68888999999988876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.9e-22  Score=156.62  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=74.8

Q ss_pred             cccccCCCcHHHHHHHhCcHHHHHHhh----cCCCCcccccCCCCCcHHHHHHhcCCHh---HHHHHHhhCCCCccccc-
Q 048248          182 NVRDERNRNPLRYAAALGHFKIACRLS----DEDDSLVYQHDCNGQSPLHLASQNGQLS---ILENLLHSYPDSIEFID-  253 (316)
Q Consensus       182 ~~~d~~g~tpLh~A~~~g~~~~~~~ll----~~~~~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~~~~~~~d-  253 (316)
                      +.+|.+|.||||+|+..|+...+..+.    ...+.....+|.+|.||||+|+..|+.+   ++++|++.+. +++.++ 
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga-din~~~~   89 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA-DINGKER   89 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC-CccccCC
Confidence            344555666666666666521111110    0111112334666777777777666653   4566665543 456665 


Q ss_pred             cCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          254 NKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       254 ~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      ..|+||||+|+..|+.+++++|+....  ..++.+|..|.||||+|+..++.+++++|++++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g--~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPG--VNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCC--CCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            367777777777777777777765321  224566667777777777777777777776654

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1e-21  Score=154.59  Aligned_cols=129  Identities=17%  Similarity=0.219  Sum_probs=107.4

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHh-----ccccccccccCCCcHHHHHHHhCc----HHHHHHhhcCCCCcccccCC-
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEA-----KRDLINVRDERNRNPLRYAAALGH----FKIACRLSDEDDSLVYQHDC-  220 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~-----~~~~~~~~d~~g~tpLh~A~~~g~----~~~~~~ll~~~~~~~~~~d~-  220 (316)
                      +..|.||||+|+..|+.++++.|+..     .+..++.+|..|+||||+|+..|+    .++++.|+..+ .+++.++. 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-adin~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-ADINAQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCCCcC
Confidence            44678999999999999888887542     235578899999999999999998    46777777654 45566674 


Q ss_pred             CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       221 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      .|+||||+|+..++.+++++|+...+..++.+|..|+||||+|+..|+.+++++|++...
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            899999999999999999999975455678899999999999999999999999998753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2.1e-21  Score=152.18  Aligned_cols=140  Identities=11%  Similarity=0.122  Sum_probs=99.9

Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHH---HHhccccccccccCCCcHHHHHHHhCcHHH---HHHhhcCCCCcccccC-CCC
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKI---LEAKRDLINVRDERNRNPLRYAAALGHFKI---ACRLSDEDDSLVYQHD-CNG  222 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~l---l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~---~~~ll~~~~~~~~~~d-~~g  222 (316)
                      .+..+.+++|.|++.|+.+.++.+   +...+..++.+|..|+||||+|+..|..+.   ++.|+..+ .+++.++ ..|
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~d~~~g   94 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINARELGTG   94 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCCCCCCC
Confidence            345667888888888887443332   223344567788888888888888877543   55666544 4556666 478


Q ss_pred             CcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCC
Q 048248          223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGN  293 (316)
Q Consensus       223 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~  293 (316)
                      .||||+|+..|+.+++++|+...+..++.++..|+||||+|+..++.+++++|+..+..   ++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV---CDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcccCCc
Confidence            88888888888888888888544455678888888888888888888888888887643   455555554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1e-20  Score=148.31  Aligned_cols=131  Identities=18%  Similarity=0.202  Sum_probs=95.8

Q ss_pred             cccccccCCCcHHHHHHHhCcHH----HHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhH---HHHHHhhCCCCcccc
Q 048248          180 LINVRDERNRNPLRYAAALGHFK----IACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSI---LENLLHSYPDSIEFI  252 (316)
Q Consensus       180 ~~~~~d~~g~tpLh~A~~~g~~~----~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i---v~~Ll~~~~~~~~~~  252 (316)
                      +++..+.++.+++|.|++.|+.+    +++.|+ ..+...+.+|..|+||||+|+..|+.++   +++|++.+ ..++.+
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~   89 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFIS-GDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINAR   89 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHh-hcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCC
Confidence            34556677788888888888763    333333 3444556678888888888888877654   67777654 456777


Q ss_pred             c-cCCCcHHHHHHHcCChhHHHHHhc-CcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          253 D-NKNRNILHLAAQNGHADVVVFILK-QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       253 d-~~g~tpLh~A~~~g~~~~~~~Ll~-~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      + ..|+||||+|+..|+.+++++|+. .+   ..++.+|..|+||||+|+..++.+++++|++.+
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g---ad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  151 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLG---VNLGAINYQHETAYHIAYKMRDRRMMEILRANG  151 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccC---CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            7 478888888888888888888884 43   235667888888888888888888888888765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=4.3e-21  Score=148.98  Aligned_cols=129  Identities=12%  Similarity=0.109  Sum_probs=92.2

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHh----ccccccccccCCCcHHHHHHHhCcHH---HHHHhhcCCCCcccccC-CCC
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEA----KRDLINVRDERNRNPLRYAAALGHFK---IACRLSDEDDSLVYQHD-CNG  222 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~----~~~~~~~~d~~g~tpLh~A~~~g~~~---~~~~ll~~~~~~~~~~d-~~g  222 (316)
                      +..|.||||+|+..|+...+......    .+..++.+|.+|.||||+|+..|+.+   +++.|+..+ .+++.++ ..|
T Consensus        14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adin~~~~~~g   92 (154)
T PHA02736         14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADINGKERVFG   92 (154)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-CCccccCCCCC
Confidence            44566666666666653211111100    01113456888999999999988764   456666555 4566676 489


Q ss_pred             CcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       223 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      +||||+|+..|+.+++++|+...+.+++.+|..|+||||+|+..|+.+++++|+..+.
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999875456678889999999999999999999999988764

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=6.8e-21  Score=164.99  Aligned_cols=229  Identities=19%  Similarity=0.213  Sum_probs=170.5

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHH
Q 048248           41 ALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLH  120 (316)
Q Consensus        41 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  120 (316)
                      .+.-||..|..+-|..|+..++.. +..+-+|.|+||-|+...+.++++++++.+++          ++..|.+||||||
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~----------Vn~~d~e~wtPlh  111 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGAN----------VNAQDNEGWTPLH  111 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCC----------ccccccccCCcch
Confidence            356677889999999999988775 66788999999999999999999999987665          4557999999999


Q ss_pred             HHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH---H
Q 048248          121 NAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---A  197 (316)
Q Consensus       121 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~---~  197 (316)
                      -|+..++..++++++..++.....      +.+|..|+-.+.......++.......+          -+ +-.+=   .
T Consensus       112 aaascg~~~i~~~li~~gA~~~av------Nsdg~~P~dl~e~ea~~~~l~~~~~r~g----------i~-iea~R~~~e  174 (527)
T KOG0505|consen  112 AAASCGYLNIVEYLIQHGANLLAV------NSDGNMPYDLAEDEATLDVLETEMARQG----------ID-IEAARKAEE  174 (527)
T ss_pred             hhcccccHHHHHHHHHhhhhhhhc------cCCCCCccccccCcchhHHHHHHHHHhc----------cc-HHHHhhhhH
Confidence            999999999999999998876432      2244556655544333333322222211          11 11111   1


Q ss_pred             hCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhc
Q 048248          198 LGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK  277 (316)
Q Consensus       198 ~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~  277 (316)
                      +-..+-+...+. .+......+..|.|.||.|+..|..++.++|+..+.. ++.+|.+||||||.|+.+|..+++++|+.
T Consensus       175 ~~ml~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~  252 (527)
T KOG0505|consen  175 QTMLDDARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVE  252 (527)
T ss_pred             HHHHHHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHH
Confidence            111222333333 4444555666699999999999999999999987654 69999999999999999999999999998


Q ss_pred             CcccccccccCCCCCCcHHHHHHHc
Q 048248          278 QPEVEDLINSSDVDGNTPLHLAAIN  302 (316)
Q Consensus       278 ~~~~~~~~~~~d~~g~t~L~~A~~~  302 (316)
                      ++..   .+.....|.||+.+|...
T Consensus       253 ~ga~---~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  253 HGAD---MDAKTKMGETPLDVADEE  274 (527)
T ss_pred             hhcc---cchhhhcCCCCccchhhh
Confidence            8754   456677899999998653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=2e-20  Score=139.27  Aligned_cols=145  Identities=23%  Similarity=0.266  Sum_probs=121.6

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      -.+..|+..+.+..|+.||...+..+|.+|.+|.||||.|+.+|+.+++..|+..++. .+.+...||||||.||...+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccch
Confidence            3466788888899999999999889999999999999999999999999999976654 567889999999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhH-HHHHhcCcccccccccCCCCCCcHHHHHHHcCC
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV-VVFILKQPEVEDLINSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~-~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  304 (316)
                      +++-+|++.+ ++++...+...||||+||...+..+ +.+|+......  .-..+..+.||+.+|.+.+-
T Consensus       144 ~va~~LLqhg-aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~--pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  144 EVAGRLLQHG-ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH--PGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHhcc-CcccccccccchhhHHhhcccchHHHHHHHhhccccC--hhhhcCccchHHHHHHHhhh
Confidence            9999999875 4579999999999999998876654 55666543322  22356789999999998754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=9.5e-20  Score=153.74  Aligned_cols=157  Identities=13%  Similarity=0.043  Sum_probs=81.3

Q ss_pred             hccCCCCCcH-HHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccc-cc
Q 048248          109 RKRDEEGNTP-LHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR-DE  186 (316)
Q Consensus       109 ~~~~~~g~t~-L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~-d~  186 (316)
                      +.+|..|+|+ ||.|+..++.++++.|++.|+++.....  ..+..|.||||+|+..++.++++.|+..+ ++++.+ +.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~--~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~~~~  102 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP--LSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRYAEE  102 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcccCC
Confidence            3455555553 3444455566666666666554421100  01234566666666666666665555443 335553 33


Q ss_pred             CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHc
Q 048248          187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN  266 (316)
Q Consensus       187 ~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  266 (316)
                      .|.||||+|+..++.++++.|+..+ ++++.+|..|+||||+|+..++.+++..+..      ...+..+.+|++++   
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---
Confidence            5666666666666666655555443 3344455666666666666555555443321      11344455555543   


Q ss_pred             CChhHHHHHhcC
Q 048248          267 GHADVVVFILKQ  278 (316)
Q Consensus       267 g~~~~~~~Ll~~  278 (316)
                      ++.+++++|+++
T Consensus       173 ~n~ei~~~Lish  184 (300)
T PHA02884        173 INFDILKILVSH  184 (300)
T ss_pred             ccHHHHHHHHHH
Confidence            245566655554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=3.4e-19  Score=132.77  Aligned_cols=143  Identities=20%  Similarity=0.221  Sum_probs=98.0

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHH
Q 048248           42 LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN  121 (316)
Q Consensus        42 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  121 (316)
                      +.+|+..+....|+.||+..++.++.+|.+|+||||-|+++|+.++++.|+..+++..          .+...||||||-
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~----------a~T~~GWTPLhS  136 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE----------AKTNEGWTPLHS  136 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc----------cccccCccchhh
Confidence            5567777777777777777777777777777777777777777777777776665532          345677777777


Q ss_pred             HHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcH-HHHHHHHHhccccccccccCCCcHHHHHHHhCc
Q 048248          122 AVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQF-VVMAKILEAKRDLINVRDERNRNPLRYAAALGH  200 (316)
Q Consensus       122 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~-~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~  200 (316)
                      |+..++.+++..|+++++++      +.+.++..||||+|+...+. ..+.+||......+-..+..+.||+.+|-+.+.
T Consensus       137 AckWnN~~va~~LLqhgaDV------nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  137 ACKWNNFEVAGRLLQHGADV------NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhcccchhHHHHHHhccCcc------cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            77777777777777777665      23444567788887765443 445555555444556667778888888776544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=146.52  Aligned_cols=150  Identities=21%  Similarity=0.176  Sum_probs=119.9

Q ss_pred             CCCCc-hHHHHHHHhCcHHHHHHHHHhcccccccc----ccCCCcHHHHHHHhCcHHHHHHhhcCCCCccccc-CCCCCc
Q 048248          151 GPNNL-TLLHSAIIKSQFVVMAKILEAKRDLINVR----DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH-DCNGQS  224 (316)
Q Consensus       151 ~~~~~-t~lh~A~~~~~~~~~~~ll~~~~~~~~~~----d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~-d~~g~t  224 (316)
                      +..+. ++||.|+..++.++++.|++.+. +++.+    +..|.||||+|+..++.++++.|++.+ ++++.+ +..|.|
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GA-diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~~~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGA-DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRYAEEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCC-CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcccCCCCCC
Confidence            33444 46677777789999999998775 57876    468999999999999999999998755 566654 467999


Q ss_pred             HHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCC
Q 048248          225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       225 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  304 (316)
                      |||+|+..|+.+++++|+..+ ++++.+|..|.||||+|+..++.+++.++....     ++..   +.+|.+++   ++
T Consensus       107 pLh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~---~n  174 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNNFLAFMICDNE-----ISNF---YKHPKKIL---IN  174 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-----cccc---ccChhhhh---cc
Confidence            999999999999999999876 457999999999999999999988887666432     2222   56777765   46


Q ss_pred             hhHHHHHhhc
Q 048248          305 FNIILVLARN  314 (316)
Q Consensus       305 ~~~~~~Ll~~  314 (316)
                      .+++++|+.+
T Consensus       175 ~ei~~~Lish  184 (300)
T PHA02884        175 FDILKILVSH  184 (300)
T ss_pred             HHHHHHHHHH
Confidence            8899988765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=3.2e-19  Score=143.42  Aligned_cols=111  Identities=24%  Similarity=0.309  Sum_probs=63.0

Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      .|..|++|||+|++.|+..+++.||.++. .+|..+.-..||||+|+.+|+.+++..|+++.+ +++..+..|+||||+|
T Consensus        30 gddhgfsplhwaakegh~aivemll~rga-rvn~tnmgddtplhlaaahghrdivqkll~~ka-dvnavnehgntplhya  107 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVEMLLSRGA-RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA-DVNAVNEHGNTPLHYA  107 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHHHHHhccc-ccccccCCCCcchhhhhhcccHHHHHHHHHHhc-ccchhhccCCCchhhh
Confidence            34455666666666666666655555543 355555555666666666666666665554443 3345555666666666


Q ss_pred             HhcCCHhHHHHHHhhCCCCccccccCCCcHHHHH
Q 048248          230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLA  263 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  263 (316)
                      |..|...|.+-|+..+. .++..+++|.|||-.|
T Consensus       108 cfwgydqiaedli~~ga-~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGA-AVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhcHHHHHHHHHhccc-eeeecccCCCCchhhh
Confidence            66666666666665433 3455666666666544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=6.8e-17  Score=120.40  Aligned_cols=124  Identities=41%  Similarity=0.655  Sum_probs=96.5

Q ss_pred             cccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHH
Q 048248          184 RDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLA  263 (316)
Q Consensus       184 ~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  263 (316)
                      +|.+|.||||+|+..++.++++.|+..+... +.++..|.||||.|+..+..++++.|+..+. .++..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHH
Confidence            4567888888888888888888887666543 4567788888888888888888888887654 3566777888888888


Q ss_pred             HHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHh
Q 048248          264 AQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA  312 (316)
Q Consensus       264 ~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll  312 (316)
                      +..++.+++++|++.+.   .++..|..|.||+++|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGA---DVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCC---CCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888888887652   24556777888888888888888888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1.9e-17  Score=133.25  Aligned_cols=115  Identities=25%  Similarity=0.287  Sum_probs=95.2

Q ss_pred             hhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccc
Q 048248          107 ILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDE  186 (316)
Q Consensus       107 ~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~  186 (316)
                      .++.-|..|.+|||+|++.|+..+++.|+..|+.+..      .+....||||+|+..|+.++|+.||.... ++|..++
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~------tnmgddtplhlaaahghrdivqkll~~ka-dvnavne   98 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS------TNMGDDTPLHLAAAHGHRDIVQKLLSRKA-DVNAVNE   98 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhccccccc------ccCCCCcchhhhhhcccHHHHHHHHHHhc-ccchhhc
Confidence            4555688899999999999999999999998876532      23345699999999999999999998765 4899999


Q ss_pred             CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       187 ~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      .|.|||||||.=|+..+++-|+..++. ++..++.|.|||--|
T Consensus        99 hgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldka  140 (448)
T KOG0195|consen   99 HGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKA  140 (448)
T ss_pred             cCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhh
Confidence            999999999999998888888866554 567889999998876

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=8.6e-16  Score=114.39  Aligned_cols=123  Identities=37%  Similarity=0.551  Sum_probs=103.7

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      +..|.||||+|+..++.+.++.|+..+.. .+.++..|.||+|+|+..+..++++.|+..+. ..+..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHH
Confidence            35688999999999999999888877653 47788899999999999999999988887764 34556788999999999


Q ss_pred             hcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      ..++.++++.|+..+. .++..+..|.||+++|...++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGA-DVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCC-CCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999998653 35778888999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=5.5e-16  Score=141.04  Aligned_cols=212  Identities=16%  Similarity=0.160  Sum_probs=154.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcC--------CccccccCCCChHHHHHHHh---CCHHHHHHHHhcCCCcccc----CCC
Q 048248            6 HKLFRALRHGYTDKVREFARLNG--------NRILGTSQNGDTALHIAARF---GHEILVMEILKHQSDLVSV----PNH   70 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~--------~~~~~~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~----~~~   70 (316)
                      .+++.+...+..+.+..++....        ..++.+...|.|.||.|..+   ++.++++.|++.-+..++.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            56677777777777755554331        34556677899999999974   4568899998865543322    234


Q ss_pred             CCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccC
Q 048248           71 KSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQ  150 (316)
Q Consensus        71 ~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  150 (316)
                      .|+||||+|+.+.+.++|++|++.++++... ..+.+....|..+..                  ..    .++   ...
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR-a~G~FF~~~dqk~~r------------------k~----T~Y---~G~  236 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHAR-ACGAFFCPDDQKASR------------------KS----TNY---TGY  236 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhH-hhccccCcccccccc------------------cc----cCC---cce
Confidence            6999999999999999999999988765421 112223222221111                  00    000   112


Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCC-cccccCCCCCcHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS-LVYQHDCNGQSPLHLA  229 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~-~~~~~d~~g~tpLh~A  229 (316)
                      -.-|..||.+|+..++.+++..|++.+ ++++.+|+.|+|.||..+..-..++-..++..++. +...+|++|.|||-+|
T Consensus       237 ~YfGEyPLSfAAC~nq~eivrlLl~~g-Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLA  315 (782)
T KOG3676|consen  237 FYFGEYPLSFAACTNQPEIVRLLLAHG-ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLA  315 (782)
T ss_pred             eeeccCchHHHHHcCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHH
Confidence            235789999999999999999999865 56899999999999999987666777777776665 3457899999999999


Q ss_pred             HhcCCHhHHHHHHhh
Q 048248          230 SQNGQLSILENLLHS  244 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~~  244 (316)
                      ++.|..++++.+++.
T Consensus       316 aklGk~emf~~ile~  330 (782)
T KOG3676|consen  316 AKLGKKEMFQHILER  330 (782)
T ss_pred             HHhhhHHHHHHHHHh
Confidence            999999999999987

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=3.6e-16  Score=109.49  Aligned_cols=82  Identities=32%  Similarity=0.489  Sum_probs=51.0

Q ss_pred             HHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhH
Q 048248          192 LRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV  271 (316)
Q Consensus       192 Lh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  271 (316)
                      ||+|++.|+.++++.|++.+.. .+.    |.||||+|+..|+.+++++|++.+. +++.+|..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGA-DINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTT-CTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhcc-cccccCCCCCCHHHHHHHcCCHHH
Confidence            5666666666666666664322 211    6667777776666777766666543 346666666666666666666666


Q ss_pred             HHHHhcCc
Q 048248          272 VVFILKQP  279 (316)
Q Consensus       272 ~~~Ll~~~  279 (316)
                      +++|++.+
T Consensus        75 ~~~Ll~~g   82 (89)
T PF12796_consen   75 VKLLLEHG   82 (89)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            66666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=6.9e-16  Score=108.06  Aligned_cols=82  Identities=43%  Similarity=0.624  Sum_probs=45.0

Q ss_pred             HHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCCh
Q 048248          226 LHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHF  305 (316)
Q Consensus       226 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~  305 (316)
                      ||+|++.|+.++++.|++.+.. ++.    |+||||+|+..|+.+++++|++.+.   .++.+|.+|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGA---DINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTT---CTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhcc---cccccCCCCCCHHHHHHHcCCH
Confidence            4556666666666666653322 222    5556666666666666666665543   2344555566666666666666


Q ss_pred             hHHHHHhhcC
Q 048248          306 NIILVLARNM  315 (316)
Q Consensus       306 ~~~~~Ll~~~  315 (316)
                      +++++|++.+
T Consensus        73 ~~~~~Ll~~g   82 (89)
T PF12796_consen   73 EIVKLLLEHG   82 (89)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            6666665543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.64  E-value=2.3e-15  Score=137.04  Aligned_cols=219  Identities=20%  Similarity=0.241  Sum_probs=150.0

Q ss_pred             cHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhc---CChhHHHHHHhhCCCcccccccccC
Q 048248           74 TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK---CDGKMAFTMIKKDPEPIRYNNKAKQ  150 (316)
Q Consensus        74 tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~  150 (316)
                      -++..|...+..+....++...... .....+..++.+..-|.|.||.|+.+   +..+++..|++..+..++..-. ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~-k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~-~e  180 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKS-KYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYT-SE  180 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhh-hhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhh-hH
Confidence            5666777777766666555432110 00001112455677899999999863   4567888888887655432211 22


Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCC-CcccccCC-----CCCc
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD-SLVYQHDC-----NGQS  224 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~-~~~~~~d~-----~g~t  224 (316)
                      ...|.||||+|+.+.+.+.|..|+..+++ ++.+-           . |.+     +..... .....+|.     -|..
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa-----------~-G~F-----F~~~dqk~~rk~T~Y~G~~YfGEy  242 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGAD-VHARA-----------C-GAF-----FCPDDQKASRKSTNYTGYFYFGEY  242 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCc-hhhHh-----------h-ccc-----cCcccccccccccCCcceeeeccC
Confidence            34688999999999999999888877654 54431           1 110     000000 00001122     3789


Q ss_pred             HHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCC
Q 048248          225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       225 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  304 (316)
                      ||.+||..++.+|+++|++. +++++.+|..|+|.||..+..-..+|..++++.++. .+...+|+.|.|||-+|+.-|+
T Consensus       243 PLSfAAC~nq~eivrlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk  320 (782)
T KOG3676|consen  243 PLSFAACTNQPEIVRLLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGK  320 (782)
T ss_pred             chHHHHHcCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhh
Confidence            99999999999999999985 456799999999999999998888899999988876 4456678889999999999999


Q ss_pred             hhHHHHHhhc
Q 048248          305 FNIILVLARN  314 (316)
Q Consensus       305 ~~~~~~Ll~~  314 (316)
                      .++.+.++++
T Consensus       321 ~emf~~ile~  330 (782)
T KOG3676|consen  321 KEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHh
Confidence            9999998876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=1e-14  Score=120.25  Aligned_cols=127  Identities=34%  Similarity=0.434  Sum_probs=75.0

Q ss_pred             ccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC-----HhHHHHHHhhCC--CCccccccC
Q 048248          183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ-----LSILENLLHSYP--DSIEFIDNK  255 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~d~~  255 (316)
                      ..+..+.+++|.++..+..+++..++..+... +.+|..|.||||+|+..|+     .++++.|++.+.  ...+..|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            34445666666666666655555555444433 5566666666666666666     666666666555  344555666


Q ss_pred             CCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          256 NRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       256 g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      |.||||+|+..|+.+++.+|++.+..   ++.++..|.|+++.|+..++..+++.|++
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHHHHHHHHh
Confidence            66666666666666666666655432   34445566666666666666666666654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=2.6e-14  Score=117.81  Aligned_cols=127  Identities=28%  Similarity=0.377  Sum_probs=110.9

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCc-----HHHHHHhhcCCC--CcccccCCCCC
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGH-----FKIACRLSDEDD--SLVYQHDCNGQ  223 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~~~~~ll~~~~--~~~~~~d~~g~  223 (316)
                      +..+.+++|.++..+....+..++..+.+ ++.+|..|.||||+|+..++     .++++.|+..+.  .....+|..|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            44577999999999998888777777655 59999999999999999999     899999998888  57777799999


Q ss_pred             cHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       224 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      ||||+|+..|+.++++.|++.++. ++.++..|.|++++|+..++.+++..++..+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999987544 5788999999999999999999999999853

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.52  E-value=3.8e-14  Score=94.68  Aligned_cols=106  Identities=26%  Similarity=0.311  Sum_probs=85.4

Q ss_pred             CCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       188 g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                      |.--+.|++++|..+.++..+..+- +++ .-..|+||||+|+..|..+++++|+..+ +.++.+|+.|-|||--|++.|
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~~g~-nVn-~~~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVNEGL-NVN-EIYGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHHccc-cHH-HHhCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHh
Confidence            3456789999999999999887773 333 3348999999999999999999999765 457999999999999999999


Q ss_pred             ChhHHHHHhcCcccccccccCCCCCCcHHHHH
Q 048248          268 HADVVVFILKQPEVEDLINSSDVDGNTPLHLA  299 (316)
Q Consensus       268 ~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A  299 (316)
                      |.++|++|++.+.... +..+  +|.+.+..+
T Consensus        79 H~~cVklLL~~GAdrt-~~~P--dG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRT-IHAP--DGTALIEAT  107 (117)
T ss_pred             hHHHHHHHHHcCcccc-eeCC--CchhHHhhc
Confidence            9999999999987543 3333  466655544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.51  E-value=1.2e-13  Score=92.36  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=83.8

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      .-+.+++.+|.++.|+..+..+ .++|.. ..|++|||+|+..|+.++++.|+..++. ++.+|+.|.|||..|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g-~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG-LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc-ccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhH
Confidence            3567889999999999888776 334443 3799999999999999999999987765 457899999999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHH
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILH  261 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh  261 (316)
                      ++|++|+.++.+ -..+..+|.+.+-
T Consensus        81 ~cVklLL~~GAd-rt~~~PdG~~~~e  105 (117)
T KOG4214|consen   81 DCVKLLLQNGAD-RTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHcCcc-cceeCCCchhHHh
Confidence            999999988765 3667778877663

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=3.5e-14  Score=89.58  Aligned_cols=50  Identities=28%  Similarity=0.372  Sum_probs=16.7

Q ss_pred             CcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHH
Q 048248          213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLA  263 (316)
Q Consensus       213 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  263 (316)
                      .+++.+|..|+||||+|+..|+.+++++|+ ..+.+++.+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            334444555555555555555555555555 22333445555555555544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=9.3e-14  Score=87.19  Aligned_cols=53  Identities=42%  Similarity=0.649  Sum_probs=21.2

Q ss_pred             CCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          256 NRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       256 g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      |+||||+|+..|+.+++++|++.+.   .++.+|.+|.||||+|++.|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~---din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA---DINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS---GTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            3444444444444444444444321   1344444444444444444444444444

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=1e-13  Score=87.04  Aligned_cols=54  Identities=43%  Similarity=0.695  Sum_probs=44.7

Q ss_pred             CCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          222 GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       222 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      |+||||+|++.|+.++++.|++.+ .+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999885 557999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=5.4e-14  Score=88.72  Aligned_cols=56  Identities=39%  Similarity=0.561  Sum_probs=32.5

Q ss_pred             HHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHH
Q 048248          241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA  299 (316)
Q Consensus       241 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A  299 (316)
                      ||+.++.+++.+|..|.||||+|+.+|+.+++++|++.+   ..++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g---~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG---ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc---CCCCCCcCCCCCHHHhC
Confidence            566666778999999999999999999999999999665   34788999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.38  E-value=3.2e-12  Score=103.30  Aligned_cols=123  Identities=21%  Similarity=0.225  Sum_probs=104.7

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcC
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG  233 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g  233 (316)
                      ...||.-++.+++.+.+..||.. ...+|.+|..|.+||..|+..|+.+.++.+++.+++.....+..++||||+|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            35799999999999998888865 44589999999999999999999999998887776655555667899999999999


Q ss_pred             CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      +.++.+.|++.+.. ....+.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        91 n~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999987655 477888899999999999999999887654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.37  E-value=2.3e-12  Score=121.96  Aligned_cols=106  Identities=22%  Similarity=0.169  Sum_probs=77.0

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      +.|+.|+..|+.+.++.|+..+. +++.+|..|+||||+|+..|+.++++.|+..+ .+++.+|.+|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Ga-din~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGA-DPNCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcH
Confidence            45777888888888877776553 47778888888888888888888888777664 44566788888888888888888


Q ss_pred             hHHHHHHhh------CCCCccccccCCCcHHHHH
Q 048248          236 SILENLLHS------YPDSIEFIDNKNRNILHLA  263 (316)
Q Consensus       236 ~iv~~Ll~~------~~~~~~~~d~~g~tpLh~A  263 (316)
                      +++++|+..      .++..+..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            888888865      1233455566677776544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=7.2e-12  Score=101.29  Aligned_cols=124  Identities=19%  Similarity=0.319  Sum_probs=101.9

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHH
Q 048248          114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR  193 (316)
Q Consensus       114 ~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  193 (316)
                      .-..||.-++..++.+-...|+..      ..+.+..|++|+|||..|+..|++++++.||+.+.+....++..+.||||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~------vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLm   84 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST------VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLM   84 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH------hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHH
Confidence            346899999999999988888885      22345678899999999999999999999998887644456778999999


Q ss_pred             HHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhh
Q 048248          194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS  244 (316)
Q Consensus       194 ~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  244 (316)
                      +|+-.|+.++.+.|++.+.. ....|.-|+|+-..|+.-|+-++|..+-..
T Consensus        85 FAALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999887777766554 456788899999999999999999955543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=2.4e-12  Score=111.96  Aligned_cols=113  Identities=19%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             HHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHH
Q 048248          195 AAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF  274 (316)
Q Consensus       195 A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~  274 (316)
                      |+-.|.+++|...+.+-. ++.+.|.+|.|+||.|+..||.+||+||++.+ +++|..|.+||||||.|+..++..+++.
T Consensus       557 aaLeGEldlVq~~i~ev~-DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g-anVNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVT-DPSQPNDEGITALHNAICAGHYEIVKFLIEFG-ANVNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             hhhcchHHHHHHHHHhhc-CCCCCCccchhHHhhhhhcchhHHHHHHHhcC-CcccCccCCCCchhhhhhhcCchHHHHH
Confidence            666677777777765433 34556777888888888888888888888664 4467888888888888888888888888


Q ss_pred             HhcCcccccccccCCCCCCcHHHHH--HHcCChhHHHHH
Q 048248          275 ILKQPEVEDLINSSDVDGNTPLHLA--AINNHFNIILVL  311 (316)
Q Consensus       275 Ll~~~~~~~~~~~~d~~g~t~L~~A--~~~~~~~~~~~L  311 (316)
                      |++.|.+.  +-..=.++.||..-+  -..|..+|.++|
T Consensus       635 LVe~Gaav--fAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  635 LVESGAAV--FASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             HHhccceE--EeeecccccchhhhcchhhhhHHHHHHHH
Confidence            88777543  222234566665533  234555666665

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.34  E-value=5.3e-12  Score=119.50  Aligned_cols=107  Identities=20%  Similarity=0.174  Sum_probs=79.2

Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA  196 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  196 (316)
                      ..|+.|+..|+.+.++.|+..+.++      +..+..|.||||+|+..|+.++++.|+..+. +++.+|..|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi------n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga-dvn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP------NCRDYDGRTPLHIACANGHVQVVRVLLEFGA-DPTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH
Confidence            3577888888888888888877654      3356678888888888888888888887654 47888888888888888


Q ss_pred             HhCcHHHHHHhhcC------CCCcccccCCCCCcHHHHHH
Q 048248          197 ALGHFKIACRLSDE------DDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       197 ~~g~~~~~~~ll~~------~~~~~~~~d~~g~tpLh~A~  230 (316)
                      ..|+.++++.|+..      .++.....+..|.+|+..+.
T Consensus       157 ~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        157 ENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            88888888888765      23333445556777766543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1.3e-11  Score=107.49  Aligned_cols=119  Identities=17%  Similarity=0.229  Sum_probs=98.1

Q ss_pred             HHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHh
Q 048248          157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLS  236 (316)
Q Consensus       157 ~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  236 (316)
                      .|.-|+..|.+++|+.++..-. ++...|..|-|+||-|+-.||.+||+.|+..+ .++|..|.+||||||+|+.+++..
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~-DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g-anVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVT-DPSQPNDEGITALHNAICAGHYEIVKFLIEFG-ANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhc-CCCCCCccchhHHhhhhhcchhHHHHHHHhcC-CcccCccCCCCchhhhhhhcCchH
Confidence            3445788899999999887654 46777889999999999999999999888655 557889999999999999999999


Q ss_pred             HHHHHHhhCCCCccccccCCCcHHHHHH--HcCChhHHHHHhc
Q 048248          237 ILENLLHSYPDSIEFIDNKNRNILHLAA--QNGHADVVVFILK  277 (316)
Q Consensus       237 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~~~~Ll~  277 (316)
                      +++.|++.+++..-..-.++.|+.--+-  +.|+.+|..||..
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999887743334557888876654  3589999999884

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.83  E-value=3.3e-09  Score=91.60  Aligned_cols=92  Identities=21%  Similarity=0.264  Sum_probs=68.9

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHH
Q 048248          186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       186 ~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  265 (316)
                      .++..++.+|++.|....++++...+.+ .+.+|.+.+|+||.|+..|+.+++++|++....+.+.+|..|+|||.-|-.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            4456677788888887777777655443 456777788888888888888888888877777777788888888888888


Q ss_pred             cCChhHHHHHhcC
Q 048248          266 NGHADVVVFILKQ  278 (316)
Q Consensus       266 ~g~~~~~~~Ll~~  278 (316)
                      .+|.+++++|-+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            8888888777654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.74  E-value=9.1e-09  Score=88.92  Aligned_cols=93  Identities=29%  Similarity=0.357  Sum_probs=80.7

Q ss_pred             CCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHH
Q 048248          219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHL  298 (316)
Q Consensus       219 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~  298 (316)
                      ..++..++.+|++.|....++.+.-.+ .+++.+|.+.+|+||.||..|+.+++++|+..-+  ...+.+|.+|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g-~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k--v~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQG-MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACK--VDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhc-ccccccccccchhheeecccCceeHHHHHHHHHc--CCCChhhccCCCcchH
Confidence            345678899999999999998777554 5579999999999999999999999999998654  3366789999999999


Q ss_pred             HHHcCChhHHHHHhhc
Q 048248          299 AAINNHFNIILVLARN  314 (316)
Q Consensus       299 A~~~~~~~~~~~Ll~~  314 (316)
                      |...+|.+++++|-+-
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            9999999999998653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.72  E-value=5.6e-08  Score=85.93  Aligned_cols=121  Identities=27%  Similarity=0.354  Sum_probs=102.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCC-ccccCCCCCCcHHHHHHHhCC
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSD-LVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      ..+..|+..+++-.+++....+|. +-..+.+..|.||+|++-|+-++|+|+|++++. .....|..|.|+||-|+..++
T Consensus       868 eeil~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            457889999998888888777664 456778889999999999999999999999874 344566789999999999999


Q ss_pred             hhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhh
Q 048248           85 FGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKK  137 (316)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~  137 (316)
                      ..+++++++.++          .+.+.|..|.||-..|-+.++.+++.+|-..
T Consensus       947 r~vc~~lvdaga----------sl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  947 RAVCQLLVDAGA----------SLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHhcch----------hheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999998653          3778899999999999999999888777654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=1.8e-08  Score=92.69  Aligned_cols=89  Identities=21%  Similarity=0.221  Sum_probs=75.5

Q ss_pred             cccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCC-CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCc
Q 048248          180 LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDC-NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN  258 (316)
Q Consensus       180 ~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  258 (316)
                      ..|+.|..|+|+||+|+..+...+++.|++.+. ++..+|. .|+||||-|..+|+.+++-.|+..+ .....+|++|.+
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGi-dv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~Dkegls  121 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGI-DVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIKDKEGLS  121 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCc-eeeeccccccchHhhHhhhhchHHHHHHHHhcC-CceEEecccCCC
Confidence            478899999999999999999999999998854 4555564 7999999999999999999999776 557899999999


Q ss_pred             HHHHHHHcCChh
Q 048248          259 ILHLAAQNGHAD  270 (316)
Q Consensus       259 pLh~A~~~g~~~  270 (316)
                      ||..-++-....
T Consensus       122 plq~~~r~~~~~  133 (1267)
T KOG0783|consen  122 PLQFLSRVLSST  133 (1267)
T ss_pred             HHHHHhhccccc
Confidence            999888744433

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.70  E-value=6.6e-08  Score=84.09  Aligned_cols=86  Identities=24%  Similarity=0.308  Sum_probs=72.7

Q ss_pred             HHHHHHHhCcHHHHHHHHHhcccccccc-ccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          157 LLHSAIIKSQFVVMAKILEAKRDLINVR-DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       157 ~lh~A~~~~~~~~~~~ll~~~~~~~~~~-d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      .||..++.|+.+....||..+++ +|.. -..|.||||.|++.|+.-.++.|+ .+|+++...|.+|+||+-+|-..||-
T Consensus       136 QLhasvRt~nlet~LRll~lGA~-~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQ-ANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccc-cCCCCcccCCchhHHHHhccchhhhhHHh-hccCCCCCCCCCCCcHHHHHHhcCch
Confidence            68999999999999999887765 5655 457999999999999988787776 45566778999999999999999999


Q ss_pred             hHHHHHHhh
Q 048248          236 SILENLLHS  244 (316)
Q Consensus       236 ~iv~~Ll~~  244 (316)
                      ++.+.|++.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            988888764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=6.9e-08  Score=85.36  Aligned_cols=116  Identities=20%  Similarity=0.225  Sum_probs=93.5

Q ss_pred             HHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCC-CccccccCCCcHHHHHHHcCChhH
Q 048248          193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD-SIEFIDNKNRNILHLAAQNGHADV  271 (316)
Q Consensus       193 h~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~~  271 (316)
                      ..|+..+.+--+......+++.. .++.+..|.||+|+..|+-+||++++.+++. .++..|..|.|+||.|+-.++.-+
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            34555555433444444566654 4788888999999999999999999998865 467788999999999999999999


Q ss_pred             HHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHh
Q 048248          272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA  312 (316)
Q Consensus       272 ~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll  312 (316)
                      +.+|++.+..   +-..|..|.||-..|-+.|+.+++-+|-
T Consensus       950 c~~lvdagas---l~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  950 CQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHHhcchh---heecccCCCChHHHHHhcCCchHHHHHh
Confidence            9999988753   3456889999999999999999998874

>PF13606 Ank_3: Ankyrin repeat

Probab=98.64  E-value=5.2e-08  Score=52.40  Aligned_cols=27  Identities=44%  Similarity=0.655  Sum_probs=22.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhcCCC
Q 048248           37 NGDTALHIAARFGHEILVMEILKHQSD   63 (316)
Q Consensus        37 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~   63 (316)
                      +|+||||+||+.|+.++|++|++.+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            478888888888888888888887765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.61  E-value=1.5e-07  Score=82.03  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             HHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhH
Q 048248          192 LRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV  271 (316)
Q Consensus       192 Lh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  271 (316)
                      ||..+..|+.+...+|+..++...+-.-..|.||||.|++.|+..=+++|+-. ++++...|.+|.||+.+|=..||.++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY-GAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY-GADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc-cCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            66666777777666666665554443334566777777777777666666543 34456667777777777766777666


Q ss_pred             HHHHhc
Q 048248          272 VVFILK  277 (316)
Q Consensus       272 ~~~Ll~  277 (316)
                      ...|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            666664

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.61  E-value=3e-08  Score=91.30  Aligned_cols=89  Identities=24%  Similarity=0.302  Sum_probs=76.8

Q ss_pred             CCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCcccccc-CCCcHHHHHHHcCChhHHHHHhcCcccccccccC
Q 048248          210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDN-KNRNILHLAAQNGHADVVVFILKQPEVEDLINSS  288 (316)
Q Consensus       210 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~  288 (316)
                      .+....+++|.-|+|+||+|+..+..++++-|+.+| .+++.+|. .|+||||-|..+|++|++..||+++..   +...
T Consensus        40 ~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhG-idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S---L~i~  115 (1267)
T KOG0783|consen   40 SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHG-IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS---LRIK  115 (1267)
T ss_pred             hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcC-ceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc---eEEe
Confidence            344456789999999999999999999999999885 45677776 799999999999999999999999843   5568


Q ss_pred             CCCCCcHHHHHHHc
Q 048248          289 DVDGNTPLHLAAIN  302 (316)
Q Consensus       289 d~~g~t~L~~A~~~  302 (316)
                      |++|.+||.+-++.
T Consensus       116 Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSRV  129 (1267)
T ss_pred             cccCCCHHHHHhhc
Confidence            99999999988774

>PF13606 Ank_3: Ankyrin repeat

Probab=98.59  E-value=5.6e-08  Score=52.27  Aligned_cols=24  Identities=50%  Similarity=0.689  Sum_probs=14.5

Q ss_pred             CCcHHHHHHHcCChhHHHHHhhcC
Q 048248          292 GNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       292 g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      |+||||+|++.|+.+++++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            556666666666666666666554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.59  E-value=1.3e-07  Score=83.27  Aligned_cols=88  Identities=31%  Similarity=0.389  Sum_probs=59.4

Q ss_pred             HHHHHHHhCcHHHHHHHHHh-ccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          157 LLHSAIIKSQFVVMAKILEA-KRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       157 ~lh~A~~~~~~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      |+|.++.....+-+...+.. ....++.+|..|+||||+|+..|+.+.+..|+..+++ ...+|+.||+|||-|+..|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCCH
Confidence            46666666555554443332 2334677777788888888888887777777765554 345777888888888888888


Q ss_pred             hHHHHHHhhC
Q 048248          236 SILENLLHSY  245 (316)
Q Consensus       236 ~iv~~Ll~~~  245 (316)
                      +++..++.++
T Consensus       102 q~i~~vlr~~  111 (560)
T KOG0522|consen  102 QIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHh
Confidence            7777777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.57  E-value=9.8e-08  Score=52.82  Aligned_cols=32  Identities=38%  Similarity=0.576  Sum_probs=18.1

Q ss_pred             CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccc
Q 048248          221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFID  253 (316)
Q Consensus       221 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d  253 (316)
                      +|.||||+|+..|+.+++++|++.+. +++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA-DINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS-CTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC-CCCCCC
Confidence            35666666666666666666665432 234443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.55  E-value=2e-07  Score=82.05  Aligned_cols=88  Identities=25%  Similarity=0.291  Sum_probs=75.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhc-CCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC
Q 048248            6 HKLFRALRHGYTDKVREFARLN-GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      .++|.+....+.+.+...+... ...++..|..|+||||+|+..|+.+.+..|+..++.+ ...|++|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            4699999999999997766544 3357788999999999999999999999999999874 6688999999999999999


Q ss_pred             hhHHHHhhcc
Q 048248           85 FGAAQIFMRP   94 (316)
Q Consensus        85 ~~~~~~l~~~   94 (316)
                      -.++..++..
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9888777754

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.53  E-value=9.3e-08  Score=90.50  Aligned_cols=130  Identities=19%  Similarity=0.108  Sum_probs=96.2

Q ss_pred             ccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHH
Q 048248          183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHL  262 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  262 (316)
                      ...-.|.|-+|+++..++...++.+++..+.....-|.+|...+|+ |..++.++..+|+...+..++++|..|||||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3455789999999999998888888885333333455666666777 555666666666665566689999999999999


Q ss_pred             HHHcCChhHHHHHhcCcccccc---cccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          263 AAQNGHADVVVFILKQPEVEDL---INSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       263 A~~~g~~~~~~~Ll~~~~~~~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      |+..|+..++.-|++.+.....   .....-.|.|+-.+|..+|+..+.-+|-+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            9999999999998866543221   12223458999999999999988887754

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.51  E-value=2e-07  Score=51.52  Aligned_cols=28  Identities=46%  Similarity=0.716  Sum_probs=24.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhcCCCc
Q 048248           37 NGDTALHIAARFGHEILVMEILKHQSDL   64 (316)
Q Consensus        37 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~   64 (316)
                      +|+||||+|+..|+.+++++|++.+++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            5889999999999999999999988764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.43  E-value=4.5e-07  Score=86.00  Aligned_cols=128  Identities=19%  Similarity=0.186  Sum_probs=101.8

Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      ....|+|.+|+++..+.--.++.+++..+......|.+|...+|+ |..++.+.+..++.-.+..++.+|..||||||+|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            344688999999999998889998875334456778889999999 5556677888888777777888999999999999


Q ss_pred             HhcCCHhHHHHHHhhCCCCc-----cccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          230 SQNGQLSILENLLHSYPDSI-----EFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      +..|+..++..|++-+...-     ...+..|.|+--.|..+|+..+.-+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999997654321     12244699999999999998887776643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.32  E-value=1.7e-06  Score=76.87  Aligned_cols=86  Identities=22%  Similarity=0.270  Sum_probs=53.7

Q ss_pred             HHHHhCcHHHHHHhhcCCCCcc---cccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChh
Q 048248          194 YAAALGHFKIACRLSDEDDSLV---YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD  270 (316)
Q Consensus       194 ~A~~~g~~~~~~~ll~~~~~~~---~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  270 (316)
                      .|+...+...+..||..+....   ..-+.+|.|+||+||+.|++.+.+.|+ -++.++-.+|..|+|+|+||=..|..+
T Consensus       630 ~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~sqe  708 (749)
T KOG0705|consen  630 RAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAGSQE  708 (749)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhcccHH
Confidence            3444444444444444332211   112345677777777777777777666 555666777777777777777777777


Q ss_pred             HHHHHhcCcc
Q 048248          271 VVVFILKQPE  280 (316)
Q Consensus       271 ~~~~Ll~~~~  280 (316)
                      |+.+|+.+|.
T Consensus       709 c~d~llq~gc  718 (749)
T KOG0705|consen  709 CIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHcCC
Confidence            7777777653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.27  E-value=2e-06  Score=76.46  Aligned_cols=87  Identities=23%  Similarity=0.181  Sum_probs=68.7

Q ss_pred             HHHHHhcCCHhHHHHHHhhCCC-Cccc--cccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHc
Q 048248          226 LHLASQNGQLSILENLLHSYPD-SIEF--IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN  302 (316)
Q Consensus       226 Lh~A~~~g~~~iv~~Ll~~~~~-~~~~--~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~  302 (316)
                      |.-|+.......+-+||.++.. .++.  -+.+|+|+||+||..|++.+.++|+=++.   ++-.+|..|+|||.||.+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~---dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV---DVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc---cceecccCCchhhhhHhhc
Confidence            4456666666677778877632 2232  35678999999999999999999996653   3567899999999999999


Q ss_pred             CChhHHHHHhhcC
Q 048248          303 NHFNIILVLARNM  315 (316)
Q Consensus       303 ~~~~~~~~Ll~~~  315 (316)
                      |..+|+.+|++.|
T Consensus       705 ~sqec~d~llq~g  717 (749)
T KOG0705|consen  705 GSQECIDVLLQYG  717 (749)
T ss_pred             ccHHHHHHHHHcC
Confidence            9999999999865

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.18  E-value=5e-06  Score=77.56  Aligned_cols=82  Identities=27%  Similarity=0.230  Sum_probs=65.6

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccc---cccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRD---LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN  232 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  232 (316)
                      --...|+..|+...|+..++....   .+|.+|.-|+++|+.|+.+.+.++.+.|++.....        ..+|.+|+..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~   98 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAV   98 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHH
Confidence            346678999999999999976543   36778889999999999999999988887553221        2588999999


Q ss_pred             CCHhHHHHHHhhC
Q 048248          233 GQLSILENLLHSY  245 (316)
Q Consensus       233 g~~~iv~~Ll~~~  245 (316)
                      |..++|+.++...
T Consensus        99 ~~v~~VE~ll~~~  111 (822)
T KOG3609|consen   99 GSVPLVELLLVHF  111 (822)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998753

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.11  E-value=5.9e-06  Score=63.47  Aligned_cols=68  Identities=22%  Similarity=0.214  Sum_probs=54.6

Q ss_pred             cccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCC
Q 048248          180 LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD  247 (316)
Q Consensus       180 ~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  247 (316)
                      ++|.+|..|+||++.|+..|..+.+.+|+.++.+.+...|..|.+++-+|-+.|+.+++..|.+....
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            46788888888888888888888888888887777777888888888888888888888888776544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.08  E-value=1e-05  Score=62.21  Aligned_cols=66  Identities=17%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             cccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCC
Q 048248          147 KAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD  212 (316)
Q Consensus       147 ~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~  212 (316)
                      .+..|..|+|+++.|+..|+.+.+.+|+..+.+.+..+|+.|.+++.+|-+.|..+.+..|.+...
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            456778899999999999999999999999878899999999999999999999888888876543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.03  E-value=2.6e-05  Score=72.87  Aligned_cols=130  Identities=15%  Similarity=0.075  Sum_probs=97.3

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCC---ccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGN---RILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAA   80 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   80 (316)
                      .+.....|+.+|+.-.|+..+.....   .+|..|..|+++|++|..+.+.++++.|++.....        .-+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            34566779999999999998876543   46778999999999999999999999999866331        35799999


Q ss_pred             HhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCc
Q 048248           81 RAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEP  141 (316)
Q Consensus        81 ~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~  141 (316)
                      ..|..+++++++.............+.-...-..+.|||..|+..+++++++.|+..+...
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            9999999999997543221110000000011235779999999999999999999988644

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.98  E-value=8.8e-06  Score=77.70  Aligned_cols=86  Identities=27%  Similarity=0.309  Sum_probs=44.1

Q ss_pred             CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHc
Q 048248          187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN  266 (316)
Q Consensus       187 ~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  266 (316)
                      .|.|+||.|+..|.....+.|++.++. ++..|..|.||||.+...|+...+..|++++.. .+..+.+|.+||++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHhhh
Confidence            355555555555554444444433332 455555555555555555555555555554332 355555555555555555


Q ss_pred             CChhHHHH
Q 048248          267 GHADVVVF  274 (316)
Q Consensus       267 g~~~~~~~  274 (316)
                      .+.+++.+
T Consensus       733 ~~~d~~~l  740 (785)
T KOG0521|consen  733 ANADIVLL  740 (785)
T ss_pred             ccccHHHH
Confidence            44444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.96  E-value=2.8e-05  Score=66.01  Aligned_cols=74  Identities=22%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARA   82 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   82 (316)
                      ..|+.||+.|+.+.|+.+++. |..+|++|....+||.+|+.+||..+|++||++|+-+. ....+|..++ +++.+
T Consensus        38 ~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~G~RC~-YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFDGDRCH-YGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccCcchhh-hhhhh
Confidence            468999999999999999884 56799999999999999999999999999999998643 2334565553 44443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.94  E-value=1.1e-05  Score=77.15  Aligned_cols=88  Identities=35%  Similarity=0.540  Sum_probs=73.5

Q ss_pred             CCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHH
Q 048248          220 CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA  299 (316)
Q Consensus       220 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A  299 (316)
                      ..|-|+||.|+..|..-++++|+.++.. ++.+|..|+||||.+...|+...+..+++.++.   .+..+.+|++||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~---~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGAD---PNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccc---ccccCccCcchhhHH
Confidence            4677999999999999999999987655 799999999999999999999999999987653   456788899999999


Q ss_pred             HHcCChhHHHHH
Q 048248          300 AINNHFNIILVL  311 (316)
Q Consensus       300 ~~~~~~~~~~~L  311 (316)
                      ....+.+.+-+|
T Consensus       730 ~~~~~~d~~~l~  741 (785)
T KOG0521|consen  730 MEAANADIVLLL  741 (785)
T ss_pred             hhhccccHHHHH
Confidence            777777666554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.84  E-value=2.6e-05  Score=66.20  Aligned_cols=70  Identities=23%  Similarity=0.305  Sum_probs=58.5

Q ss_pred             cHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHH
Q 048248          224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH  297 (316)
Q Consensus       224 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~  297 (316)
                      --|..||+.|..+.|+.|++ .+..+|.+|....+||.+|+-.||.+++++|++.|....   .-..+|...+.
T Consensus        38 ~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~---rdtf~G~RC~Y  107 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS---RDTFDGDRCHY  107 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc---ccccCcchhhh
Confidence            46889999999999999998 566789999999999999999999999999999987542   22355666643

>smart00248 ANK ankyrin repeats

Probab=96.70  E-value=0.0026  Score=32.73  Aligned_cols=23  Identities=43%  Similarity=0.733  Sum_probs=11.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHhhc
Q 048248          292 GNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       292 g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                      |.||+|+|+..++.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            44555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.65  E-value=0.0037  Score=32.11  Aligned_cols=25  Identities=36%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhcCC
Q 048248           38 GDTALHIAARFGHEILVMEILKHQS   62 (316)
Q Consensus        38 g~t~Lh~A~~~~~~~~v~~Ll~~~~   62 (316)
                      |.||||+|+..++.+++++|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6788888888888888888887665

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.53  E-value=0.031  Score=49.86  Aligned_cols=47  Identities=28%  Similarity=0.254  Sum_probs=40.2

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH
Q 048248           33 GTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAA   80 (316)
Q Consensus        33 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   80 (316)
                      ..+..--|+||+|+..|.-.+|.+||.++++ ....|..|+||..++.
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            3445567999999999999999999999965 5678889999999877

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.81  E-value=0.064  Score=47.92  Aligned_cols=43  Identities=28%  Similarity=0.295  Sum_probs=25.5

Q ss_pred             CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       187 ~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      --.|+||+|+.+|..+++.+||..+ .++..+|..|.||..++.
T Consensus       429 ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  429 LTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            3456666666666666666666555 444556666666666554

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.36  E-value=0.4  Score=38.64  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             hHHHHHHhhCCCCcc---ccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          236 SILENLLHSYPDSIE---FIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~---~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      .|++..+++|-..++   .+-++|.|-|--|.+++..+++.+||++|.
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            345555554433332   234456666666666666666666666554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.14  E-value=1.5  Score=35.49  Aligned_cols=44  Identities=16%  Similarity=0.049  Sum_probs=20.2

Q ss_pred             HHHHHhhcCCCCcccc---cCCCCCcHHHHHHhcCCHhHHHHHHhhC
Q 048248          202 KIACRLSDEDDSLVYQ---HDCNGQSPLHLASQNGQLSILENLLHSY  245 (316)
Q Consensus       202 ~~~~~ll~~~~~~~~~---~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  245 (316)
                      .+++.++.++-.+++.   +-+.|.|-|--|.++++.+++.+|+++|
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            4444444444333321   2234555555555555555555555443

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.93  E-value=3.9  Score=32.09  Aligned_cols=51  Identities=6%  Similarity=0.038  Sum_probs=35.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhc
Q 048248           39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR   93 (316)
Q Consensus        39 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~   93 (316)
                      +..|-.|++.+-..+++++-+.....    -...++-+-.||+..++++++..-.
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~q   97 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQ   97 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhh
Confidence            34577788888888877766543321    1245667778999899999888754

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.34  E-value=0.81  Score=30.35  Aligned_cols=47  Identities=15%  Similarity=0.316  Sum_probs=38.7

Q ss_pred             cHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       224 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      .-+..|..+|+.||++.+++...        .....+..|+..-+-+++.+|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~--------~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK--------PDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc--------cHHHHHHHHHHHhhHHHHHHHHHh
Confidence            45789999999999998886531        116779999999999999999975

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.19  E-value=1.2  Score=29.49  Aligned_cols=49  Identities=24%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             cHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCC
Q 048248          190 NPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYP  246 (316)
Q Consensus       190 tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  246 (316)
                      .-+..|+..|..+++...++....     +   ...+..|+...+-++++.|++++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~y~   56 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIENYN   56 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHhcC
Confidence            357889999999999988854311     1   357999999999999999998753

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=83.43  E-value=20  Score=28.22  Aligned_cols=74  Identities=11%  Similarity=0.049  Sum_probs=49.1

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      .--+..|++.+-+..++++-+.....    -....+.+-.||+..+.++|+|+-++-.    +  .+-.+-+-+|...++
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~----i--~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLH----I--YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccC----C--CCchhhhhhhhhccc
Confidence            34577899999999887765432211    2345788999999999999999844321    1  123345667777777


Q ss_pred             hhHH
Q 048248           85 FGAA   88 (316)
Q Consensus        85 ~~~~   88 (316)
                      +++.
T Consensus       117 lsLy  120 (192)
T PF03158_consen  117 LSLY  120 (192)
T ss_pred             hhHH
Confidence            6653

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-17
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-16
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-13
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-12
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-05
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		6e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		7e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		8e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		8e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		9e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-04
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-04
1uoh_A	226	Human Gankyrin Length = 226		2e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 43/330 (13%)
Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A R G+T+ V+     N N  L T+  G T LHIAAR GH   V+ +L+ ++    +
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 68  PNHKSETPMHVAARAGNFGAAQIFMR----PHGNGNNTGT------------FDDILRKR 111
              K  TP+HVAA+ G    A++ +     P+  G N  T               +L  R
Sbjct: 143 -TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 112 DEE-------GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK 164
                     G TPLH A ++   ++A ++++        N ++ QG   +T LH A  +
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQG---VTPLHLAA-Q 254
Query: 165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS 224
                M  +L +K+   N+ ++    PL   A  GH  +A  L  +   +V      G +
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYT 313
Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNR---NILHLAAQNGHADVVVFILKQPEV 281
           PLH+AS  G + +++ LL    D    ++ K +   + LH AAQ GH D+V  +LK    
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQAD----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            + ++S   DG TPL +A    + ++  VL
Sbjct: 370 PNEVSS---DGTTPLAIAKRLGYISVTDVL 396

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 189 RNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS 248
           R PL  AA  GH ++  +L  E  + V   D NG++PLHLA++NG L +++ LL +  D 
Sbjct: 3   RTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 249 IEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII 308
           +   D   R  LHLAA+NGH +VV  +L   E    +N+ D +G TPLHLAA N H  ++
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 309 LVL 311
            +L
Sbjct: 118 KLL 120

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
           NG++PLHLA++NG L +++ LL +  D +   D   R  LHLAA+NGH +VV  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +N+ D +G TPLHLAA N H  ++ +L
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PLHLA++ G L I+E LL  Y   +   DN     LHLAA NGH ++V  +LK 
Sbjct: 44  DWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D +G TPLHLAA + H  I+ VL +
Sbjct: 103 GAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
           +N  D   R PL YAA  GH +I  +L     + V   D +G++PLH A++ G   I++ 
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
           L+    D +   D+  R  LH AA+ GH ++V  ++ +      +N+SD DG TPL LA 
Sbjct: 89  LISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDSDGRTPLDLAR 144
Query: 301 INNHFNIILVLAR 313
            + +  I+ +L +
Sbjct: 145 EHGNEEIVKLLEK 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
           +N  D   + PL  AA  GH ++  +L     +     D +G++PLHLA++NG   +++ 
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
           LL    D     D+  +  LHLAA+NGH +VV  +L Q       N+SD DG TPL LA 
Sbjct: 89  LLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLAR 144
Query: 301 INNHFNIILVLAR 313
            + +  ++ +L +
Sbjct: 145 EHGNEEVVKLLEK 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D +G +PLHLA++ G L I+E LL +  D +   D      LHLAA+ GH ++V  +LK 
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D DG TPLHLAA   H  I+ VL +
Sbjct: 91  GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D +G +PLHLA+ NG L I+E LL +  D +  +D+     L LAA  GH ++V  
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
           +LK       +N++D++G+TPLHLAA+  H  I+ VL +N
Sbjct: 99  LLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
           +N  D   R PL +AA  GH ++  +L     + V   D +G++PLH A++NG   +++ 
Sbjct: 30  VNASDSDGRTPLHHAAENGHKEV-VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
           L+    D +   D+  R  LH AA+NGH +VV  ++ +      +N+SD DG TPL LA 
Sbjct: 89  LISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAR 144
Query: 301 INNHFNIILVLAR 313
            + +  ++ +L +
Sbjct: 145 EHGNEEVVKLLEK 157

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D +G +PLHLA++ G L I+E LL +  D +   D      LHLAA+ GH ++V  
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N+ D DG TPLHLAA   H  I+ VL +
Sbjct: 99  LLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK 134

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D +G +PLHLA++ G L I+E LL +  D +   D      LHLAA+ GH ++V  
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N+ D DG TPLHLAA   H  I+ VL +
Sbjct: 87  LLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL 241
           N  D   R PL YAA  GH +I  +L     +     D +G++PLH A++NG   I++ L
Sbjct: 31  NASDSDGRTPLHYAAENGHKEI-VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Query: 242 LHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
           L    D     D+  R  LH AA+NGH ++V  +L +       N+SD DG TPL LA  
Sbjct: 90  LSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGRTPLDLARE 145
Query: 302 NNHFNIILVLAR 313
           + +  I+ +L +
Sbjct: 146 HGNEEIVKLLEK 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D NG +PLHLA+ NGQL I+E LL +  D +   D+     LHLAA +GH ++V  +LK 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D  G TPLHLAA++    I+ VL +
Sbjct: 95  GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D +G +PLHLA+  G L I+E LL    D +  ID      LHLAA  GH ++V  +LK 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D  G+TPLHLAAI  H  I+ VL +
Sbjct: 103 GAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D +G +PLHLA+  G L I+E LL    D +  ID      LHLAA  GH ++V  +LK 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D  G+TPLHLAAI  H  I+ VL +
Sbjct: 103 GAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D  G +PLHLA++ G L I+E LL +  D +  +D      LHLAA+ GH ++V  
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N+ D  G+TPLHLAA   H  I+ VL +
Sbjct: 99  LLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLK 134

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D  G +PLHLA+  G L I+E LL +  D +   D+     LHLAA+ GH ++V  
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
           +LK       +N+SD  G TPLHLAA   H  I+ VL +N
Sbjct: 99  LLKNGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D +G +PLHLA+ NG L I+E LL +  D +   D      LHLAA  GH ++V  +LK 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D DG+TPLHLAA   H  I+ VL +
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V  +D  G +PLHL   NG L I+E LL  Y   +   D      LHLAA  GH ++V  
Sbjct: 40  VNANDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N+ D  G TPLHLAA + H  I+ VL +
Sbjct: 99  LLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PLHLA+ +G L I+E LL    D ++  D      LHLAA  GH ++V  +LK 
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D+ G+TPLHLAA   H  I+ VL +
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLK 134

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V  HD  G +PLHLA+  G   I+E LL    D +   D      LHLAA NGH ++V  
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N+ D  G TPLHLAA   H  I+ VL +
Sbjct: 99  LLKYGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLK 134

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
           +D  G++PLH+A+  G L I+E LL +  D +  +D      LHLAA  GH ++V  +LK
Sbjct: 31  YDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                  +N+ D  G TPL+LAA   H  I+ VL +
Sbjct: 90  YGAD---VNAKDATGITPLYLAAYWGHLEIVEVLLK 122

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D +G++PLHLA+  G L I+E LL    D +   D      LHLAA  GH ++V  
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N++D  G TPLHLAA   H  I+ VL +
Sbjct: 99  LLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLK 134

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PLHLA+ +G L I+E LL    D ++  D      LHLAA  GH ++V  +LK 
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D DG TPLHLAA   +  I+ VL +
Sbjct: 103 GAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PLHLA+  G L I+E LL +  D +   D      LHLAA  GH ++V  +LK 
Sbjct: 44  DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D +G TPLHLAA   H  I+ VL +
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLK 134

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
           +G +PLH A++NG    ++ LL    D +          LHLAA+NGHA++V  +L +  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +N+   DGNTP HLA  N H  I+ +L
Sbjct: 67  D---VNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 222 GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV 281
           G +PLHLA+  G L I+E LL +  D +   D+     LHLAA  GH +VV  +LK    
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
              +N++D +G TPLHLAA   H  I+ VL +
Sbjct: 106 ---VNANDHNGFTPLHLAANIGHLEIVEVLLK 134

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL--SDED 211
           N+TLLH A I ++  ++   +     +  +  + N  PL +A   GH  +  +L     D
Sbjct: 42  NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
            SL+   D  G S +HLA+Q G  SI+  L+    D ++ +D      L  AA   H+  
Sbjct: 102 PSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVD 157
Query: 272 VVFILKQPEVEDLINSSD-VDGNTPLHLAAINNHFNIILVL 311
              +L    V   +N  D    NT LH A +  +  +I +L
Sbjct: 158 PTRLLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLL 196

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
           +  D  G SPLHLA+Q G  S  E LL +   S +     +R  LH+AA  GHA++V  +
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 276 LKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           LK       +N+ D+   T LH A  +NH  ++ +L +
Sbjct: 87  LKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIK 121

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 2   STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
           S +  KL  A R G  D+VR     NG  +    + G+T LH+AA + H  +V  +LKH 
Sbjct: 12  SDLGKKLLEAARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 62  SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +D V+  ++   TP+H+AA  G+    ++ ++ HG
Sbjct: 71  AD-VNAHDNDGSTPLHLAALFGHLEIVEVLLK-HG 103

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
           D K    LHLAA   H ++V  +LK       +N+ D DG+TPLHLAA+  H  I+ VL 
Sbjct: 44  DRKGNTPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 313 R 313
           +
Sbjct: 101 K 101

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 29/246 (11%)
Query: 74  TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
           +P+H AA AG+     + ++    G N  T         E+  TPL  A      +    
Sbjct: 13  SPLHAAAEAGHVDICHMLVQA---GANIDTC-------SEDQRTPLMEAAENNHLEAVKY 62
Query: 134 MIKK----DPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNR 189
           +IK     DP       K  +G    T LH A  K  + V+  +L   +  +N +D+   
Sbjct: 63  LIKAGALVDP-------KDAEGS---TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW 112
Query: 190 NPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSI 249
            P+ +A    H  +  +L     S +   D      LH A+ +G + I E LL +  D +
Sbjct: 113 TPMIWATEYKHVDLV-KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-L 170
Query: 250 EFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL 309
             ++    + LH+AA+    D VV  L +     L N    +G TPL  A++N+     L
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK---EGETPLQCASLNSQVWSAL 227
Query: 310 VLARNM 315
            +++ +
Sbjct: 228 QMSKAL 233

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSY 245
           +  R+PL  AA  GH  I C +  +  + +     + ++PL  A++N  L  ++ L+ + 
Sbjct: 9   QNKRSPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 246 PDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHF 305
              ++  D +    LHLAA+ GH +VV ++L   +++  +N  D  G TP+  A    H 
Sbjct: 68  A-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHV 124
Query: 306 NIILVL 311
           +++ +L
Sbjct: 125 DLVKLL 130

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 2   STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
           S +  KL  A R G  D+VR     NG  +      G T LH+AA+ GH  +V  +LKH 
Sbjct: 12  SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62  SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
           +D V+  +    TP+H+AA  G+    ++ +    + N    F
Sbjct: 71  AD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PLHLA++ G L I+E LL    D +   D+  R  LHLAA  GH ++V  +L  
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
            E    +N+ D  G T   ++  N + ++  +L +
Sbjct: 101 -EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 16/216 (7%)
Query: 42  LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
           LH A        V E+L  +  L+   +     P+H +            +    N N  
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-- 63
Query: 102 GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA 161
              DD     D+ G TP H A    + ++  ++  +  +P   N    QG   +T LH A
Sbjct: 64  --LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG---VTCLHLA 114
Query: 162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
           + K  F V   ++E     + ++D+ N+ PL  AA++G  K+   L     S V   D  
Sbjct: 115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 222 GQSPLH--LASQNGQLSILENLLHSYPDSIEFIDNK 255
           G +PL   LA  +G  ++L  L+  Y    + +DNK
Sbjct: 174 GWTPLFHALAEGHGDAAVL--LVEKYGAEYDLVDNK 207

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 16/216 (7%)
Query: 42  LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
           LH A        V E+L  +  L+   +     P+H +            +    N N  
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-- 63
Query: 102 GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA 161
              DD     D+ G TP H A    + ++  ++  +  +P   N    QG   +T LH A
Sbjct: 64  --LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG---VTCLHLA 114
Query: 162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
           + K  F V   ++E     + ++D+ N+ PL  AA++G  K+   L     S V   D  
Sbjct: 115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 222 GQSPLH--LASQNGQLSILENLLHSYPDSIEFIDNK 255
           G +PL   LA  +G  ++L  L+  Y    + +DNK
Sbjct: 174 GWTPLFHALAEGHGDAAVL--LVEKYGAEYDLVDNK 207

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 16/216 (7%)
Query: 42  LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
           LH A        V E+L  +  L+   +     P+H +            +    N N  
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-- 63
Query: 102 GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA 161
              DD     D+ G TP H A    + ++  ++  +  +P   N    QG   +T LH A
Sbjct: 64  --LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG---VTCLHLA 114
Query: 162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
           + K  F V   ++E     + ++D+ N+ PL  AA++G  K+   L     S V   D  
Sbjct: 115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 222 GQSPLH--LASQNGQLSILENLLHSYPDSIEFIDNK 255
           G +PL   LA  +G  ++L  L+  Y    + +DNK
Sbjct: 174 GWTPLFHALAEGHGDAAVL--LVEKYGAEYDLVDNK 207

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
           PLH A++ G LS L   L +    +  +D      L+ A   GH D+V  +  QP +E  
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE-- 132
Query: 285 INSSDVDGNTPLHLAAINNHFNII-LVLAR 313
           +N  +  G+T LH AA   + +I+ L+LA+
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 2   STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
           S +  KL  A R G  D+VR     NG  +      G T LH+AA+ GH  +V  +LKH 
Sbjct: 12  SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62  SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
           +D V+  +    TP+H+AA  G+    ++ +    + N    F
Sbjct: 71  AD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PLHLA++ G L I+E LL    D +   D   R  LHLAA  GH ++V  +L  
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
            E    +N+ D  G T   ++  N + ++  +L +
Sbjct: 101 -EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 2   STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
           S +  KL  A R G  D+VR     NG  +    ++G T LH+AA+ GH  +V  +LK+ 
Sbjct: 12  SDLGKKLLEAARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 62  SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +D V+  ++   TP+H+AA  G+    ++ ++ HG
Sbjct: 71  AD-VNAEDNFGITPLHLAAIRGHLEIVEVLLK-HG 103

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D +G +PLHLA+Q G L I+E LL  Y   +   DN     LHLAA  GH ++V  +LK 
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 +N+ D  G T   ++  N + ++  +L +
Sbjct: 103 GAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 113 EEGNTPLHNAVRKCDGKMAFTMI---KKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVV 169
           E+G++ LH A+   +  +   +I   K D   + + N  +Q P     LH A+I +Q  +
Sbjct: 3   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP-----LHLAVITNQPEI 57
Query: 170 MAKILEAKRDLINVRDERNRNPLRYA------AALGHFKIACRLSDEDDSLVYQHDCNGQ 223
              +L A  D   +RD R   PL  A      A++G    +C  +    S++   + NG 
Sbjct: 58  AEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCT-TPHLHSILKATNYNGH 115
Query: 224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
           + LHLAS +G L I+E L+    D         R  LHLA    + D+V  +LK
Sbjct: 116 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ---- 278
           Q+PLHLA    Q  I E LL +  D  E  D +    LHLA + G     V +L Q    
Sbjct: 43  QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQG-CLASVGVLTQSCTT 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
           P +  ++ +++ +G+T LHLA+I+ +  I+ +L 
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           TSQ+G + LH+AA  G   L+  +LKH ++     N     P+H+A + G+F   +  + 
Sbjct: 82  TSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG---KMAFTMIKKDPEPIRYNNKAKQ 150
            +   N          K+D  GNTPL   +  C G   ++   +++        NNK   
Sbjct: 141 SNAKPN----------KKDLSGNTPL---IYACSGGHHELVALLLQHGASINASNNKGN- 186
Query: 151 GPNNLTLLHSAII-KSQFVVMAKILEAKRDLINVRDERNRNPLRYA 195
                T LH A+I K  FVV   +L      + V ++R R  +  A
Sbjct: 187 -----TALHEAVIEKHVFVVELLLLHGAS--VQVLNKRQRTAVDCA 225

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS-------PLHLASQNG 233
           +NV  +   +PL  AA  G   +          L+ +H  N  +       PLHLA Q G
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLI--------PLLLKHGANAGARNADQAVPLHLACQQG 130
Query: 234 QLSILENLLHS--YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
              +++ LL S   P+  +   N     L  A   GH ++V  +L+       IN+S+  
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGN---TPLIYACSGGHHELVALLLQHGAS---INASNNK 184
Query: 292 GNTPLHLAAINNHFNIILVL 311
           GNT LH A I  H  ++ +L
Sbjct: 185 GNTALHEAVIEKHVFVVELL 204

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 2   STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
           S +  KL  A R G  D+VR     NG  +      G T LH+AA+ GH  +V  +LKH 
Sbjct: 12  SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62  SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
           +D V+  +    TP+H+AA  G+    ++ +    + N    F
Sbjct: 71  AD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PLHLA++ G L I+E LL    D +   D   R  LHLAA  GH ++V  +L  
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
            E    +N+ D  G T   ++  N + ++  +L +
Sbjct: 101 -EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 109 RKRDEEGNTPLHNAVRKCDGKMAFTMI---KKDPEPIRYNNKAKQGPNNLTLLHSAIIKS 165
           ++  E+G++ LH A+   +  +   +I   K D   + + N  +Q P     LH A+I +
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP-----LHLAVITN 56
Query: 166 QFVVMAKILEAKRDLINVRDERNRNPLRYA------AALGHFKIACRLSDEDDSLVYQHD 219
           Q  +   +L A  D   +RD R   PL  A      A++G    +C  +    S++   +
Sbjct: 57  QPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCT-TPHLHSILKATN 114
Query: 220 CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
            NG + LHLAS +G L I+E L+    D         R  LHLA    + D+V  +LK
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG---HADVVVFILKQP 279
           Q+PLHLA    Q  I E LL +  D  E  D +    LHLA + G      V+      P
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 280 EVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
            +  ++ +++ +G+T LHLA+I+ +  I+ +L 
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPE--PIRYNNKAKQGPN--------NLTLLHS 160
           R  +G TPL   +  C G    T   ++ E  P   ++   QG +          T LH 
Sbjct: 6   RGPDGFTPL--MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHL 63
Query: 161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDDSLVYQ 217
           A   S+     ++LEA  D  N++D   R PL  A    A G F+I  R +   D     
Sbjct: 64  AAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARM 121
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
           HD  G +PL LA++     +LE+L++S+ D +  +D+  ++ LH AA   + D  V +LK
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +D+ N+ +    TPL LAA    +    VL
Sbjct: 179 NGANKDMQNNRE---ETPLFLAAREGSYETAKVL 209

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 203 IACRLS-DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH 261
           +A RL  D  ++ + Q D +G SPLH A + G+ +++E L+      I  ++  +   LH
Sbjct: 19  VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLH 77
Query: 262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
           LAA +GH D+V  +L   + +  IN+ +  GN PLH A  
Sbjct: 78  LAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 2   STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
           S +  KL  A R G  D+VR     NG  +      G T LH+AA  GH  +V  +LK+ 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTA-NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 62  SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +D V+   +   TP+H+AA A +    ++ ++ HG
Sbjct: 71  AD-VNATGNTGRTPLHLAAWADHLEIVEVLLK-HG 103

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V  +D  G +PLHLA+  G L I+E LL +  D +    N  R  LHLAA   H ++V  
Sbjct: 40  VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N+ D  G T   ++  N + ++  +L +
Sbjct: 99  LLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 203 IACRLS-DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH 261
           +A RL  D  ++ + Q D +G SPLH A + G+ +++E L+      I  ++  +   LH
Sbjct: 14  VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLH 72
Query: 262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
           LAA +GH D+V  +L   + +  IN+ +  GN PLH A  
Sbjct: 73  LAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 109

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPE--PIRYNNKAKQGPN--------NLTLLHS 160
           R  +G TPL   +  C G    T   ++ E  P   ++   QG +          T LH 
Sbjct: 7   RGPDGFTPL--MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 64
Query: 161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDDSLVYQ 217
           A   S+     ++LEA  D  N++D   R PL  A    A G F+I  R +   D     
Sbjct: 65  AARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARM 122
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
           HD  G +PL LA++     +LE+L++S+ D +  +D+  ++ LH AA   + D  V +LK
Sbjct: 123 HD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +D+ N+ +    TPL LAA    +    VL
Sbjct: 180 NGANKDMQNNRE---ETPLFLAAREGSYETAKVL 210

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPE--PIRYNNKAKQGPN--------NLTLLHS 160
           R  +G TPL   +  C G    T   ++ E  P   ++   QG +          T LH 
Sbjct: 6   RGPDGFTPL--MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63
Query: 161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDDSLVYQ 217
           A   S+     ++LEA  D  N++D   R PL  A    A G F+I  R +   D     
Sbjct: 64  AARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARM 121
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
           HD  G +PL LA++     +LE+L++S+ D +  +D+  ++ LH AA   + D  V +LK
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +D+ N+ +    TPL LAA    +    VL
Sbjct: 179 NGANKDMQNNRE---ETPLFLAAREGSYETAKVL 209

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDD 212
           T LH A   S+     ++LEA  D  N++D   R PL  A    A G F+I  R +   D
Sbjct: 27  TALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATD 84
Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
                HD  G +PL LA++     +LE+L++S+ D +  +D+  ++ LH AA   + D  
Sbjct: 85  LDARMHD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAA 141
Query: 273 VFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           V +LK    +D+ N+ +    TPL LAA    +    VL
Sbjct: 142 VVLLKNGANKDMQNNRE---ETPLFLAAREGSYETAKVL 177

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
           E ++++   D  G +PL  A+ +GQ++++E LL +  D  + +     + L LA   G+ 
Sbjct: 40  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYT 98
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           D+V  +L   +    +N  D +G TPL  A   NH   + +L
Sbjct: 99  DIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 137

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
           E ++++   D  G +PL  A+ +GQ++++E LL +  D  + +     + L LA   G+ 
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYT 82
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           D+V  +L   +    +N  D +G TPL  A   NH   + +L
Sbjct: 83  DIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
           E ++++   D  G +PL  A+ +GQ++++E LL +  D  + +     + L LA   G+ 
Sbjct: 22  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYT 80
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           D+V  +L   +    +N  D +G TPL  A   NH   + +L
Sbjct: 81  DIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
            D +G SP+H A++ G L  L+ L+    D +  +D+     +HLA + GH+ VV F+  
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL-- 128
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
            PE +  ++  D  G TPL LA      N++ +L  +M
Sbjct: 129 APESD--LHHRDASGLTPLELARQRGAQNLMDILQGHM 164

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
            D +G SP+H A++ G L  L+ L+    D +  +D+     +HLA + GH+ VV F+  
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL-- 126
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
            PE +  ++  D  G TPL LA      N++ +L  +M
Sbjct: 127 APESD--LHHRDASGLTPLELARQRGAQNLMDILQGHM 162

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 198 LGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR 257
            G   IA  L  +  S   Q D +G SP+H A++ G L  L+ L+    D +   D    
Sbjct: 45  FGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGA 102
Query: 258 NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
             +HLA Q GH  VV F+  + +    ++  D  G TPL LA      +++ +L  +M
Sbjct: 103 LPIHLAVQEGHTAVVSFLAAESD----LHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 222 GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV 281
           G++ LH A+Q     I++ L+     + +  D   +  + LAAQ G  +VV ++++Q   
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
            + ++++D   +T   LA  NNH NI+ +  R
Sbjct: 339 VEAVDATD---HTARQLAQANNHHNIVDIFDR 367

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 52/301 (17%)
Query: 5   DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
           +H L +A+++   D V++      N      + G T LH A +   E +V  +L+H +D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 65  VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
           V +      TP  +AA AG+    ++F+    + N    +          G T    A  
Sbjct: 66  V-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY----------GFTAFMEAA- 113
Query: 125 KCDGKM-AFTMIKKDPEPIRYNNKAKQGPNNL-----TLLHSAIIKSQFVVMAKILEAKR 178
              GK+ A   + K    +    K K+    L     T L  A  K    V+  +L+   
Sbjct: 114 -VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 179 DLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
             +N  D   RN L +A                                L+S +  +  +
Sbjct: 173 ADVNACDNMGRNALIHAL-------------------------------LSSDDSDVEAI 201
Query: 239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHL 298
            +LL  +   +     + +  L LA +  H  +V  +L+Q  +E  IN +D DG T L L
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLL 259
Query: 299 A 299
           A
Sbjct: 260 A 260

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 198 LGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR 257
            G   IA  L  +  S   Q D +G SP+H A++ G L  L+ L+    D +   D    
Sbjct: 51  FGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGA 108
Query: 258 NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
             +HLA Q GH  VV F+  + +    ++  D  G TPL LA      +++ +L  +M
Sbjct: 109 LPIHLAVQEGHTAVVSFLAAESD----LHRRDARGLTPLELALQRGAQDLVDILQGHM 162

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 52/301 (17%)
Query: 5   DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
           +H L +A+++   D V++      N      + G T LH A +   E +V  +L+H +D 
Sbjct: 26  NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 85
Query: 65  VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
           V +      TP  +AA AG+    ++F+    + N    +          G T    A  
Sbjct: 86  V-LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFY----------GFTAFMEAA- 133
Query: 125 KCDGKM-AFTMIKKDPEPIRYNNKAKQGPNNL-----TLLHSAIIKSQFVVMAKILEAKR 178
              GK+ A   + K    +    K K+    L     T L  A  K    V+  +L+   
Sbjct: 134 -VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 179 DLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
             +N  D   RN L +A                                L+S +  +  +
Sbjct: 193 ADVNACDNMGRNALIHAL-------------------------------LSSDDSDVEAI 221
Query: 239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHL 298
            +LL  +   +     + +  L LA +  H  +V  +L+Q  +E  IN +D DG T L L
Sbjct: 222 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLL 279
Query: 299 A 299
           A
Sbjct: 280 A 280

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
           D+LV + D  G +PL  AS  G++  +  LL    D    +  +  + L LA+  G+ D+
Sbjct: 26  DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDI 84
Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII-LVLARN 314
           V  +L++ +V+  IN  D +G TPL  A   NH   +  +LAR 
Sbjct: 85  VGLLLER-DVD--INIYDWNGGTPLLYAVRGNHVKCVEALLARG 125

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 176 AKRDLINVRDERNRNPLRYAAALGH-------FKIACRLSDEDDSLVYQHDCNGQSPLHL 228
           A + L    D+ +R  L +A + GH        ++   ++D+DD+        G SPLH+
Sbjct: 29  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 80
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK---QPEVED-- 283
           A+  G+  I++ LL      +  ++      LH AA     ++ V +L+    P+ +D  
Sbjct: 81  AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 284 -------------------------LINSSDVDGNTPLHLAA 300
                                      N  D +GNTPLHLA 
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 181

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 176 AKRDLINVRDERNRNPLRYAAALGH-------FKIACRLSDEDDSLVYQHDCNGQSPLHL 228
           A + L    D+ +R  L +A + GH        ++   ++D+DD+        G SPLH+
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK---QPEVED-- 283
           A+  G+  I++ LL      +  ++      LH AA     ++ V +L+    P+ +D  
Sbjct: 80  AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 284 -------------------------LINSSDVDGNTPLHLAA 300
                                      N  D +GNTPLHLA 
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 180

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 180 LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
           L N RD  NR PL  A  LG      +L +  D L    D  G + L  A +N +L I E
Sbjct: 27  LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAE 85
Query: 240 NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA 299
            LL S   ++   D   +  L  +   G++++  F+L+       +N  +++G TPL +A
Sbjct: 86  KLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVA 141
Query: 300 A 300
           +
Sbjct: 142 S 142

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACR--LSDE 210
           T LH A   S+     ++LEA  D   ++D   R PL  A    A G F+I  R   +D 
Sbjct: 24  TALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD 270
           D  +   HD  G +PL LA++     +LE+L++S+ D +  +D+  ++ LH AA   + D
Sbjct: 83  DARM---HD--GTTPLILAARLALEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVD 136
Query: 271 VVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
             V +LK    +D+ N+ +    TPL LAA    +    VL
Sbjct: 137 AAVVLLKNGANKDMQNNKE---ETPLFLAAREGSYETAKVL 174

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D  G +PLHLA+ N  L I+E LL +  D +  ID      LHL A  GH ++V  
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +LK       +N+ D  G T   ++  N + ++  +L +
Sbjct: 99  LLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
           D+LV + D  G +PL  AS  G++  +  LL    D    +  +  + L LA+  G+ D+
Sbjct: 26  DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDI 84
Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII-LVLARN 314
           V  +L++ +V+  IN  D +G TPL  A   NH   +  +LAR 
Sbjct: 85  VGLLLER-DVD--INIYDWNGGTPLLYAVHGNHVKCVEALLARG 125

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 17  TDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPM 76
           +D + + A LN        + G+T+LH+AARF        +L   +D  S  N    TP+
Sbjct: 34  SDLLAQGAELNAT----MDKTGETSLHLAARFARADAAKRLLDAGADANSQDN-TGRTPL 88
Query: 77  HVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIK 136
           H A  A   G  QI +R              L  R  +G TPL  A R     M   +I 
Sbjct: 89  HAAVAADAMGVFQILLRNRATN---------LNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 137 KDPEPIRYNNKAKQGPNNLTLLH--SAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRY 194
            D +    +N  K      T LH  +A+  ++ V +  +  A RD    +D+++  PL  
Sbjct: 140 ADADINAADNSGK------TALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFL 190
Query: 195 AAALGHFKIACRLSD 209
           AA  G ++ +  L D
Sbjct: 191 AAREGSYEASKALLD 205

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 176 AKRDLINVRDERNRNPLRYAAALGH-------FKIACRLSDEDDSLVYQHDCNGQSPLHL 228
           A + L    D+ +R  L +A + GH        ++   ++D+DD+        G SPLH+
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK---QPEVED-- 283
           A+  G+  I++ LL      +  ++      LH AA     ++ V +L+    P+ +D  
Sbjct: 80  AASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 284 -------------------------LINSSDVDGNTPLHLAA 300
                                      N  D +GNTPLHLA 
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2  STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
          S +  KL  A R G  D+VR     NG  +    +NG T LH+AAR GH  +V  +L+  
Sbjct: 4  SDLGKKLLEAARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
          +D V+  +   +T   ++   GN   A+I 
Sbjct: 63 AD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 2   STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
           S +  KL  A R G  D+VR     NG  +    + G T L++A   GH  +V  +LK+ 
Sbjct: 12  SDLGKKLLEAARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 62  SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +D V+  +    TP+H+AA  G+   A++ ++ HG
Sbjct: 71  AD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HG 103

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLH-SYPDSIEFIDNKNRNILHLAAQNGHA 269
           D SL  + D + ++ LH A   G   I+E LL    P  +   D+   + LH+AA  G  
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXD 86
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           ++V  +L +      +N+ + +G TPLH AA  N   I ++L
Sbjct: 87  EIVKALLVKGA---HVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
           TLLH A IK     +  +L+   D  NV+D     PL  A   GH K+   L  +  +LV
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKV-VELLLQHKALV 69
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLL 242
                   SPLH A++NG + I++ LL
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLL 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-05
2rfa_A	232	Transient receptor potential cation channel subfa	6e-22
2rfa_A	232	Transient receptor potential cation channel subfa	5e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-20
2pnn_A	273	Transient receptor potential cation channel subfa	7e-16
2pnn_A	273	Transient receptor potential cation channel subfa	6e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
2etb_A	256	Transient receptor potential cation channel subfam	9e-17
2etb_A	256	Transient receptor potential cation channel subfam	1e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-15
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	3e-13
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (331), Expect = 3e-35
 Identities = 76/278 (27%), Positives = 122/278 (43%), Gaps = 23/278 (8%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
             ++G T LH+A+  GH  +V  +L+  +   +V N K ETP+H+AARAG+   A+  ++
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
                N           + ++  TPLH A R     M   +++ +  P   N     G  
Sbjct: 69  NKAKVN----------AKAKDDQTPLHCAARIGHTNMVKLLLENNANP---NLATTAG-- 113

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
             T LH A  +     +  +LE +        ++   PL  AA  G  ++A  L +  D+
Sbjct: 114 -HTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLER-DA 170

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
                  NG +PLH+A  +  L I++ LL     S           LH+AA+    +V  
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +L+        N+  V G TPLHLAA   H  ++ +L
Sbjct: 230 SLLQY-GGS--ANAESVQGVTPLHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (331), Expect = 3e-35
 Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 23/278 (8%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
            +  G T LHIAAR GH   V+ +L+ ++   +    K  TP+HVAA+ G    A++ + 
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
              + N             + G TPLH AV   +  +   ++ +   P   ++ A  G  
Sbjct: 168 RDAHPN----------AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP---HSPAWNG-- 212

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
             T LH A  ++Q  V   +L+      N    +   PL  AA  GH ++   L  +  +
Sbjct: 213 -YTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-A 269

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
                + +G +PLHL +Q G + + + L+      ++         LH+A+  G+  +V 
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVK 328

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           F+L+  + +  +N+    G +PLH AA   H +I+ +L
Sbjct: 329 FLLQH-QAD--VNAKTKLGYSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (331), Expect = 4e-35
 Identities = 79/305 (25%), Positives = 130/305 (42%), Gaps = 26/305 (8%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A   G+   V+   +  G     ++   +T LH+AAR GH  +   +L++++  V+ 
Sbjct: 18  LHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNA 75

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
                +TP+H AAR G+    ++ +  +  N N               G+TPLH A R+ 
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLL-ENNANPN----------LATTAGHTPLHIAAREG 124

Query: 127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDE 186
             +    +++K+          K+G    T LH A    +  V A++L  +    N   +
Sbjct: 125 HVETVLALLEKEASQ---ACMTKKG---FTPLHVAAKYGKVRV-AELLLERDAHPNAAGK 177

Query: 187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYP 246
               PL  A    +  I   L     S  +    NG +PLH+A++  Q+ +  +LL    
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

Query: 247 DSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN 306
                   +    LHLAAQ GHA++V  +L +   +   N  +  G TPLHL A   H  
Sbjct: 237 S-ANAESVQGVTPLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVP 292

Query: 307 IILVL 311
           +  VL
Sbjct: 293 VADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  125 bits (316), Expect = 5e-33
 Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 23/280 (8%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
            G T LH+AA++G   +   +L+  +   +       TP+HVA    N    ++ +   G
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
           + +               G TPLH A ++   ++A ++++        N ++ QG   +T
Sbjct: 204 SPH----------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQG---VT 247

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY 216
            LH A  +    ++A +L  + +  N+ ++    PL   A  GH  +A  L      +V 
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVD 305

Query: 217 QHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL 276
                G +PLH+AS  G + +++ LL    D +        + LH AAQ GH D+V  +L
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLL 364

Query: 277 KQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS 316
           K        N    DG TPL +A    + ++  VL     
Sbjct: 365 KN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (286), Expect = 8e-29
 Identities = 59/264 (22%), Positives = 98/264 (37%), Gaps = 22/264 (8%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           NG T LH+A    +  +V  +L         P     TP+H+AA+      A+  ++ +G
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YG 235

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            + N              +G TPLH A ++   +M   ++ K       N   K G   L
Sbjct: 236 GSAN----------AESVQGVTPLHLAAQEGHAEMVALLLSKQANG---NLGNKSG---L 279

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
           T LH    +    V A +L     +++        PL  A+  G+ K+   L     + V
Sbjct: 280 TPLHLVAQEGHVPV-ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADV 337

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
                 G SPLH A+Q G   I+  LL +       + +     L +A + G+  V   +
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 276 LKQPEVEDLINSSDVDGNTPLHLA 299
               +    +  SD    +     
Sbjct: 397 KVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (275), Expect = 3e-27
 Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 22/247 (8%)

Query: 65  VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
                    TP+HVA+  G+    +  ++   + N            + +  TPLH A R
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN----------VSNVKVETPLHMAAR 56

Query: 125 KCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR 184
               ++A  +++   +    N KAK      T LH A       ++  +LE   +  N+ 
Sbjct: 57  AGHTEVAKYLLQNKAKV---NAKAKDD---QTPLHCAARIGHTNMVKLLLENNAN-PNLA 109

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
                 PL  AA  GH +    L ++ ++        G +PLH+A++ G++ + E LL  
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168

Query: 245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH 304
                          LH+A  + + D+V  +L +       +S   +G TPLH+AA  N 
Sbjct: 169 DAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPR---GGSPHSPAWNGYTPLHIAAKQNQ 224

Query: 305 FNIILVL 311
             +   L
Sbjct: 225 VEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 248 SIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNI 307
           S           LH+A+  GH  +V  +L++       N S+V   TPLH+AA   H  +
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEV 62

Query: 308 ILVL 311
              L
Sbjct: 63  AKYL 66

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  125 bits (317), Expect = 3e-34
 Identities = 49/287 (17%), Positives = 87/287 (30%), Gaps = 29/287 (10%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSV--PNHKSETPMHVAARAGNFGAAQIF 91
            +++GDTALH+A    HE  +  +L   +    +   N   +T +H+AA  G     +  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 92  MRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMI-------KKDPEPIR 143
               G                +  G+T LH A R      A  ++       +   +   
Sbjct: 65  YA-AGAGVL----------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113

Query: 144 YNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKI 203
             ++      +          +         E  R  +   +     PL  A      ++
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173

Query: 204 ACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLA 263
              L D    L       G++PLHLA +    S+LE LL              R  L  A
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSA 232

Query: 264 AQNGHADVVVFILKQ--PEVEDLINSSDVDGNTPLHLAAINNHFNII 308
               +  +   +     P           D  +P   +  ++  +  
Sbjct: 233 LLRPNPILARLLRAHGAP-----EPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 20/218 (9%)

Query: 107 ILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQ 166
           +     E+G+T LH AV          ++         + +   G    T LH A I  +
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLG---QTALHLAAILGE 57

Query: 167 FVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL---------SDEDDSLVYQ 217
              + K+  A    + V +      L  A  +     AC L            D  L   
Sbjct: 58  ASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 218 HDCNGQS---PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
            DC   +   P  + SQ    +  E     +   +E  +      LH+A  +  A++V  
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176

Query: 275 ILKQPEVEDLINSSDVD-GNTPLHLAAINNHFNIILVL 311
           +         +N  +   G TPLHLA      +++ +L
Sbjct: 177 LRDA---GADLNKPEPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.8 bits (164), Expect = 7e-13
 Identities = 36/219 (16%), Positives = 59/219 (26%), Gaps = 30/219 (13%)

Query: 37  NGDTALHIAARFGHEILVMEILKH------------QSDLVSVPNHKSETPMHVAARAGN 84
            G TALH+A R         +L+              +         S  P  V ++   
Sbjct: 77  GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136

Query: 85  FGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY 144
               +                      + +G+TPLH AV   D +M   +     +    
Sbjct: 137 ENEEEPRDEDWRLQLE---------AENYDGHTPLHVAVIHKDAEMVRLLRDAGADL--- 184

Query: 145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
           N          T LH A+      V  ++L         R    R PL  A    +  +A
Sbjct: 185 NKPEPT--CGRTPLHLAVEAQAASV-LELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241

Query: 205 CRLSDED-DSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
             L          +   +  SP   +  +      +   
Sbjct: 242 RLLRAHGAP--EPEDGGDKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 26/205 (12%), Positives = 53/205 (25%), Gaps = 52/205 (25%)

Query: 1   ESTVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKH 60
             T         +    ++          ++   + +G T LH+A       +V  +   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 61  QSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPL 119
            +DL         TP+H+A  A      ++ ++  G +             R   G TPL
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPT----------ARMYGGRTPL 229

Query: 120 HNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRD 179
            +A+ +                    N                       +A++L A   
Sbjct: 230 GSALLR-------------------PNPI---------------------LARLLRAHGA 249

Query: 180 LINVRDERNRNPLRYAAALGHFKIA 204
                     +P   + +       
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNR 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (300), Expect = 9e-32
 Identities = 64/292 (21%), Positives = 106/292 (36%), Gaps = 36/292 (12%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRP 94
           +   +  L  A +     LV ++L+  +++         TP+H A +       ++ +R 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR- 60

Query: 95  HG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
           HG +             R + G TP   A      K+    + K  +    N     G  
Sbjct: 61  HGADPV----------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYG-- 105

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN----------PLRYAAALGHFKI 203
             T    A +  +     K L  +   +N+R +   +           L  AA  GH ++
Sbjct: 106 -FTAFMEAAVYGKVKA-LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 204 ACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLS----ILENLLHSYPDSIEFIDNKNRNI 259
              L DE  + V   D  G++ L  A  +   S    I   LL    D +     + +  
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTP 222

Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           L LA +  H  +V  +L+Q  +E  IN +D DG T L LA       I  +L
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 91.8 bits (229), Expect = 1e-21
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 26/215 (12%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMA 171
             E N  L  AV+  D  +   +++        N + ++G    T LH+A+  S+  +  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANV---NFQEEEG--GWTPLHNAVQMSREDI-V 55

Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDCNGQSPLH 227
           ++L        +R +    P   AA  G  K+        +D     V + D  G +   
Sbjct: 56  ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-----VNECDFYGFTAFM 110

Query: 228 LASQNGQLSILENLL---------HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
            A+  G++  L+ L              +  E +       L  AA+ GH +V+  +L +
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
              +  +N+ D  G   L  A +++  + +  +  
Sbjct: 171 MGAD--VNACDNMGRNALIHALLSSDDSDVEAITH 203

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 90.2 bits (225), Expect = 4e-21
 Identities = 64/297 (21%), Positives = 108/297 (36%), Gaps = 39/297 (13%)

Query: 8   LFRALRHGYTDKVREF----ARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSD 63
           L +A+++   D V++     A +N        + G T LH A +   E +V  +L+H +D
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQ----EEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 64  LVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNA 122
              +      TP  +AA AG+    ++F+   G + N          + D  G T    A
Sbjct: 65  -PVLRKKNGATPFLLAAIAGSVKLLKLFL-SKGADVN----------ECDFYGFTAFMEA 112

Query: 123 VRKCDGKMAFTMIK-------KDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILE 175
                 K    + K       +           K G    T L  A  K    V  KIL 
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG---ATALMDAAEKGHVEV-LKILL 168

Query: 176 AKRDL-INVRDERNRNPLRYAAALGHFKIACRLSD---EDDSLVYQHDCNGQSPLHLASQ 231
            +    +N  D   RN L +A           ++    +  + V      G++PL LA +
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228

Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ---PEVEDLI 285
              L +++ LL      I   D+  +  L LA +     +   + K+    +  DL+
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (302), Expect = 2e-31
 Identities = 53/320 (16%), Positives = 103/320 (32%), Gaps = 40/320 (12%)

Query: 6   HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLV 65
           H L  A   GY  + R                           G++ L  +       + 
Sbjct: 39  HSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLG-DFNHTNLQIP 87

Query: 66  SVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
           + P  +S   +H  A AG++   +   R            +I         T LH     
Sbjct: 88  TEPEPESPIKLHTEA-AGSYAITEPITR-ESV--------NI--IDPRHNRTVLHWIASN 135

Query: 126 CDGKMAFTMIKKDPEPIRYN--NKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINV 183
              + +  +I  + +       +      +  T L  A++  +  +    L        +
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL-VAYLMKAGADPTI 194

Query: 184 RDERNRNPLRYAAALGHFKIACRL--SDEDDSLVYQHDCNGQSPLHLASQNGQLSILE-- 239
            ++  R+ L  AAA   F +   +  S +    + + D NG + L + + N     +   
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA 254

Query: 240 --------NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
                    + +      +    K R  LH AAQ  +  +V +++ +       +  D D
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN--KDKQDED 312

Query: 292 GNTPLHLAAINNHFNIILVL 311
           G TP+ LAA      +++ L
Sbjct: 313 GKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  112 bits (283), Expect = 9e-29
 Identities = 61/317 (19%), Positives = 107/317 (33%), Gaps = 29/317 (9%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
             +   +G      +F   N              LH  A  G   +   I +   + +  
Sbjct: 65  NPQGYGNGNDFLG-DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVN-IID 121

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
           P H   T +H  A   +   ++  +  H          D+    D + NTPL  AV    
Sbjct: 122 PRHN-RTVLHWIASNSSAEKSEDLI-VHEAKECIAAGADV-NAMDCDENTPLMLAVLARR 178

Query: 128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDL---INVR 184
            ++   ++K   +P       K      + LH A     F +    +     L   I   
Sbjct: 179 RRLVAYLMKAGADP---TIYNKSE---RSALHQAAANRDFGM-MVYMLNSTKLKGDIEEL 231

Query: 185 DERNRNPLRYAAALGHF---KIACRL-------SDEDDSLVYQHDCNGQSPLHLASQNGQ 234
           D      L   A          A  L         +  +        G++ LH A+Q   
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 235 LSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNT 294
           + I++ L+     + +  D   +  + LAAQ G  +VV+++++Q      + + D   +T
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHT 348

Query: 295 PLHLAAINNHFNIILVL 311
              LA  NNH NI+ + 
Sbjct: 349 ARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 98.9 bits (247), Expect = 9e-24
 Identities = 41/281 (14%), Positives = 77/281 (27%), Gaps = 70/281 (24%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +   +L  A+  G+       L           H S  P       GN          + 
Sbjct: 36  SSQHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNHT-NL 84

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                        + + E    LH                         + A        
Sbjct: 85  QIPT---------EPEPESPIKLHTEA--------------------AGSYA-------- 107

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY 216
                        + + +  +   I      NR  L + A+    + +  L   +     
Sbjct: 108 -------------ITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 153

Query: 217 QH-------DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
                    DC+  +PL LA    +  ++  L+          +   R+ LH AA N   
Sbjct: 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTIYNKSERSALHQAAANRDF 212

Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILV 310
            ++V++L   +++  I   D +G T L + A N   + +  
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 16/212 (7%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           + +T L +A       LV  ++K  +D  ++ N    + +H AA   +FG     +    
Sbjct: 165 DENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVR---KCDGKMAFTMIKK--DPEPIRYNNKAKQG 151
              +       + + D  G T L        +     A  +++K    +      K  + 
Sbjct: 224 LKGD-------IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276

Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDL-INVRDERNRNPLRYAAALGHFKIACRLSDE 210
               T LH A   S  + + K L  ++    + +DE  + P+  AA  G  ++   L  +
Sbjct: 277 YKGRTALHYAAQVSN-MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
             + V   D    +   LA  N   +I++   
Sbjct: 336 G-ASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 16/137 (11%)

Query: 175 EAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ 234
           E K    +     +++ L  A+  G+ K              +       P      NG 
Sbjct: 24  EEKNRKNHQSITSSQHSLLEASYDGYIKRQ----------RNELQHYSLYPNPQGYGNGN 73

Query: 235 LSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNT 294
             + +   H+        + ++   LH  A  G   +   I ++      I        T
Sbjct: 74  DFLGD-FNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRE---SVNIIDPR-HNRT 127

Query: 295 PLHLAAINNHFNIILVL 311
            LH  A N+       L
Sbjct: 128 VLHWIASNSSAEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 14/104 (13%)

Query: 208 SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG 267
           ++E +   +Q   + Q  L  AS +G +    N           + + +         NG
Sbjct: 23  NEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYGNG 72

Query: 268 HADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           +  +  F         +    + +    LH  A    + I   +
Sbjct: 73  NDFLGDFNHTN---LQIPTEPEPESPIKLHTEA-AGSYAITEPI 112

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  117 bits (296), Expect = 1e-30
 Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 44/282 (15%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
                +H+AAR G    V  +++      ++ N    T +H+A + G    A+      G
Sbjct: 19  ENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLAS-VG 76

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
             ++              G  P+H AV      +   ++             +       
Sbjct: 77  EVHS-----------LWHGQKPIHLAVMANKTDLVVALV---------EGAKE---RGQM 113

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALG--HFKIACRLSDEDDSL 214
                    +     ++ E      +V+  + +  L +   LG  + ++  ++  +  + 
Sbjct: 114 PESLLNECDER----EVNEI---GSHVKHCKGQTALHWCVGLGPEYLEMI-KILVQLGAS 165

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS----IEFIDNKNRNILHLAAQNGHAD 270
               D   ++PL  A +      L+ ++ + P      +++ + +  + LH A      D
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225

Query: 271 VV-VFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           V   F+    +V    N  D +   PL+L+       +   L
Sbjct: 226 VAMRFVEMGIDV----NMEDNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  115 bits (290), Expect = 9e-30
 Identities = 39/299 (13%), Positives = 85/299 (28%), Gaps = 61/299 (20%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPH 95
            +G   +H+A          +++     LV     + + P  +          +I     
Sbjct: 82  WHGQKPIHLAVMANKT----DLVVA---LVEGAKERGQMPESLLNECDEREVNEI----- 129

Query: 96  GNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG--KMAFTMIKKDPEPIRYNNKAKQGPN 153
              +           +  +G T LH  V       +M   +++    P     K K    
Sbjct: 130 -GSH----------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP---TAKDKAD-- 173

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDL----INVRDERNRNPLRYAAALGHFKIACRL-- 207
             T L  A+       +  +++         ++  +++  + L +A  +    +A R   
Sbjct: 174 -ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 208 --SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN------- 258
              D     V   D     PL+L+ +   + + + LL    D          N       
Sbjct: 233 MGID-----VNMEDNEHTVPLYLSVRAAMVLLTKELL-QKTDVFLIQACPYHNGTTVLPD 286

Query: 259 ------ILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                  +  AA     +V+  + ++    D +  S   G              +  + 
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEK---LDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (288), Expect = 2e-29
 Identities = 46/291 (15%), Positives = 90/291 (30%), Gaps = 49/291 (16%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKS-ETPMHVAARAGNFGAAQIFMRPH 95
            G TALH+A +FG       +           +    + P+H+A  A             
Sbjct: 52  FGCTALHLACKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVAL---- 103

Query: 96  GNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
                       +    E G  P        + ++     +        + K  +G    
Sbjct: 104 ------------VEGAKERGQMPESLLNECDEREVN----EIGS-----HVKHCKG---Q 139

Query: 156 TLLHSAIIKSQFVV-MAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL 214
           T LH  +      + M KIL         +D+ +  PL  A    + +    + D   S 
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199

Query: 215 ----VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD 270
               +   +  G S LH A       +    +    D +   DN++   L+L+ +     
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVL 258

Query: 271 VVVFILKQPEVEDL----------INSSDVDGNTPLHLAAINNHFNIILVL 311
           +   +L++ +V  +          +    V     +  AA  +   ++ +L
Sbjct: 259 LTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (256), Expect = 5e-25
 Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 43/280 (15%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGA--AQIFMRP 94
            G     +           E+ +       V + K +T +H     G       +I ++ 
Sbjct: 110 RGQMPESLLNECDER----EVNEI---GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ- 161

Query: 95  HG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEP--IRYNNKAKQG 151
            G +             +D+   TPL  A+   + +    M+   P    +R +   KQG
Sbjct: 162 LGASPT----------AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG 211

Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL---- 207
               + LH AI+ +   V  + +E   D +N+ D  +  PL  +       +   L    
Sbjct: 212 ---NSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

Query: 208 --------SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI 259
                      + + V          +  A+   +  +L+ LL    D +    N     
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ-LLQEKLDEVVRSLNTGAGG 326

Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA 299
                +     V    L        + +          ++
Sbjct: 327 AVKRKKKAAPAVKRMKLAP---SAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 34/245 (13%)

Query: 36  QNGDTALHIAARFGHEIL-VMEIL-KHQSDLVSVPNHKSETPMHVAARAGNFGAAQ--IF 91
             G TALH     G E L +++IL +  +   +  +   ETP+  A    N  A    + 
Sbjct: 136 CKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 92  MRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG 151
             P  +          L   +++GN+ LH A+      +A   ++   +    N +  + 
Sbjct: 195 TVPSKSSLR-------LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV---NMEDNEH 244

Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN-------------PLRYAAAL 198
                 L+ ++  +  V++ K L  K D+  ++     N              +  AA  
Sbjct: 245 ---TVPLYLSVRAAM-VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 199 GHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN 258
              ++   L ++ D  V +    G        +    ++    L      +         
Sbjct: 301 SKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP-VRTRSRSRAR 358

Query: 259 ILHLA 263
              ++
Sbjct: 359 SSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.6 bits (192), Expect = 3e-16
 Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 23/133 (17%)

Query: 181 INVRDERNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDCNGQSPLHLASQNGQLS 236
               D+ N   +  AA  G      RL               +  G + LHLA + G + 
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-----PTIQNRFGCTALHLACKFGCVD 67

Query: 237 ILENLLHSYPDSIEFIDNKNRNI-LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTP 295
             + L              +    +HLA      D+VV          L+  +   G  P
Sbjct: 68  TAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVA---------LVEGAKERGQMP 114

Query: 296 LHLAAINNHFNII 308
             L    +   + 
Sbjct: 115 ESLLNECDEREVN 127

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 249 IEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII 308
               D++N   +H+AA+ G  D V  +++   V       +  G T LHLA      +  
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET-GVS--PTIQNRFGCTALHLACKFGCVDTA 69

Query: 309 LVL 311
             L
Sbjct: 70  KYL 72

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 9/111 (8%), Positives = 26/111 (23%), Gaps = 11/111 (9%)

Query: 12  LRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHK 71
           L+      ++     NG  +L         +  AA    + ++  + +   + V    + 
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNT 322

Query: 72  SETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNA 122
                    +       ++ + P                R          +
Sbjct: 323 GAGGAVKRKKKAAPAVKRMKLAPSAPVR----------TRSRSRARSSAVS 363

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (288), Expect = 1e-29
 Identities = 58/308 (18%), Positives = 107/308 (34%), Gaps = 44/308 (14%)

Query: 27  NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFG 86
              + + T +     L  AAR G+E  +M +L   +      + +  TP+H+AA      
Sbjct: 13  PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR 72

Query: 87  AAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYN 145
             Q+ +  HG + +           +D+ G  PLHNA      ++   ++K        N
Sbjct: 73  IVQLLL-QHGADVH----------AKDKGGLVPLHNACSYGHYEVTELLLKHGACV---N 118

Query: 146 NKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIAC 205
                     T LH A  K++  V   +L +      + +   ++ +  A      +   
Sbjct: 119 AMDLWQ---FTPLHEAASKNRVEV-CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174

Query: 206 RLSDEDDSLVY--------------------QHDCNGQSPLHLASQNGQLSILE--NLLH 243
                   L                      +   + ++ LH A  +      +   LL 
Sbjct: 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL 234

Query: 244 SYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINN 303
               ++   +      LH+AA+  H DV+  + K    +  +N+ D  G T LH AA+  
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAK--MNALDSLGQTALHRAALAG 291

Query: 304 HFNIILVL 311
           H     +L
Sbjct: 292 HLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (261), Expect = 9e-26
 Identities = 58/319 (18%), Positives = 111/319 (34%), Gaps = 37/319 (11%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A R G  +K+             +     T LH+AA +    +V  +L+H +D V  
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHA 86

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
            +     P+H A   G++   ++ ++ HG   N            D    TPLH A  K 
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLK-HGACVN----------AMDLWQFTPLHEAASKN 135

Query: 127 DGKMAFTMIKKDPEP--------------IRYNNK--AKQGPNNLTLLHSAIIKSQFVVM 170
             ++   ++    +P                   +          +LL +A  ++    +
Sbjct: 136 RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR-EADLAKV 194

Query: 171 AKILEAKRDLINVRDERNRNPLRYAAALGHFKIA--CRLSDEDDSLVYQHDCNGQSPLHL 228
            K L  +      + + +   L  A A  H K      L     + V + + +  +PLH+
Sbjct: 195 KKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV 253

Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
           A++     ++E L   +   +  +D+  +  LH AA  GH      +L     +   +  
Sbjct: 254 AAERAHNDVMEVLH-KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSD--PSII 309

Query: 289 DVDGNTPLHLAAINNHFNI 307
            + G T   +        +
Sbjct: 310 SLQGFTAAQMGNEAVQQIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.9 bits (224), Expect = 1e-20
 Identities = 54/293 (18%), Positives = 92/293 (31%), Gaps = 58/293 (19%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
            G   LH A  +GH  +   +LKH +  V+  +    TP+H AA         + +  HG
Sbjct: 90  GGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLS-HG 147

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKK----------DPEPIRY- 144
            +              +  G + +  A      +      K           D   ++  
Sbjct: 148 ADPT----------LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT 197

Query: 145 ------NNKAKQGPNNLTLLHSAIIKSQF--VVMAKILEAKRDLINVRDERNRNPLRYAA 196
                 N K  Q  ++ T LH A+         +A++L  K   +N +++    PL  AA
Sbjct: 198 LALEIINFKQPQ--SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA 255

Query: 197 ALGHFKIACRLSDEDDSLVYQH------DCNGQSPLHLASQNGQLSILENLLHSYPDSIE 250
              H  +        + L          D  GQ+ LH A+  G L     LL    D   
Sbjct: 256 ERAHNDVM-------EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PS 307

Query: 251 FIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINN 303
            I  +      +  +     V   + +   +         D +  L  A+   
Sbjct: 308 IISLQGFTAAQMGNEA----VQQILSESTPMR------TSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.6 bits (174), Expect = 5e-14
 Identities = 31/205 (15%), Positives = 71/205 (34%), Gaps = 24/205 (11%)

Query: 111 RDEEGNTPLHNAVRKCDGK-MAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVV 169
             E     L  A R  + + +   +   +      +    +     T LH A   ++  +
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNC---HASDGRK---STPLHLAAGYNRVRI 73

Query: 170 MAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA 229
             ++L      ++ +D+    PL  A + GH+++   L     + V   D    +PLH A
Sbjct: 74  -VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEA 131

Query: 230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSD 289
           +   ++ +   LL    D    ++   ++ + +A      + + +              +
Sbjct: 132 ASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTY--------------E 176

Query: 290 VDGNTPLHLAAINNHFNIILVLARN 314
             G++ L  A   +   +   LA  
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALE 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  106 bits (268), Expect = 1e-27
 Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 59/278 (21%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPH 95
           QN  + LH AA  GH  +   +++  ++ +   +    TP+  AA   +  A +  ++  
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIK-A 66

Query: 96  GNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
           G   +          +D EG+T LH A +                     +         
Sbjct: 67  GALVD---------PKDAEGSTCLHLAAK-------------------KGHYE------- 91

Query: 156 TLLHSAIIKSQFVVMAKIL-EAKRDLINVRDERNRNPLRYAAALGHFKIA-CRLSDEDDS 213
                         + + L    +  +N +D+    P+ +A    H  +    LS   D 
Sbjct: 92  --------------VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD- 136

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
            +   D      LH A+ +G + I E LL +  D +  ++    + LH+AA+    D VV
Sbjct: 137 -INIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVV 194

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
             L     +  +   + +G TPL  A++N+     L +
Sbjct: 195 LFL---SRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 97.5 bits (244), Expect = 3e-24
 Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 11/202 (5%)

Query: 110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVV 169
              +   +PLH A       +   +++        +  ++      T L  A   +    
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQ---RTPLMEAAENNHLEA 59

Query: 170 MAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA 229
             K L     L++ +D      L  AA  GH+++   L       V   D  G +P+  A
Sbjct: 60  -VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSD 289
           ++   + +++ LL S    I   DN+    LH AA +G  D+   +L     +  +++ +
Sbjct: 119 TEYKHVDLVKLLL-SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA---KCDLHAVN 174

Query: 290 VDGNTPLHLAAINNHFNIILVL 311
           + G++PLH+AA  N ++ +++ 
Sbjct: 175 IHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.0 bits (209), Expect = 3e-19
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 18/138 (13%)

Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH-------DCNGQSPLHLASQNG 233
             +  +  R+PL  AA  GH  I          LV Q          + ++PL  A++N 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDIC-------HMLV-QAGANIDTCSEDQRTPLMEAAENN 55

Query: 234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGN 293
            L  ++ L+ +    ++  D +    LHLAA+ GH +VV ++L   +++  +N  D  G 
Sbjct: 56  HLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGW 112

Query: 294 TPLHLAAINNHFNIILVL 311
           TP+  A    H +++ +L
Sbjct: 113 TPMIWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 18/212 (8%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +  T L  AA   H   V  ++K  +  V   + +  T +H+AA+ G++   Q  +  +G
Sbjct: 43  DQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLL-SNG 100

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
             +        +  +D+ G TP+  A       +   ++ K  +    N +  +      
Sbjct: 101 QMD--------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI---NIRDNEE---NI 146

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY 216
            LH A       + A+IL A +  ++  +    +PL  AA    +         D S V 
Sbjct: 147 CLHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVT 204

Query: 217 QHDCNGQSPLHLASQNGQLSILENLLHSYPDS 248
             +  G++PL  AS N Q+     +  +  DS
Sbjct: 205 LKNKEGETPLQCASLNSQVWSALQMSKALQDS 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  106 bits (267), Expect = 1e-27
 Identities = 46/280 (16%), Positives = 92/280 (32%), Gaps = 57/280 (20%)

Query: 37  NGDTALHIAARFGH----EILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFM 92
           +GDT LHIA   G+      LV    +   + + + N+  +TP+H+A         ++ +
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLV 66

Query: 93  RPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG 151
              G +              D  G T  H A           ++         ++ A   
Sbjct: 67  T-AGASPM----------ALDRHGQTAAHLACEHRSPTCLRALL---------DSAAPGT 106

Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED 211
            +                           +  R+      L  A      +    L +  
Sbjct: 107 LD---------------------------LEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
             +      +G+SPL  A +N  LS+++ LL  +  ++        + LH A+  G   +
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQMYSGSSALHSASGRGLLPL 198

Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           V  +++    +   +  +   +TPL +A      +I+   
Sbjct: 199 VRTLVRS-GAD--SSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.0 bits (227), Expect = 7e-22
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 25/216 (11%)

Query: 107 ILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEP-IRYNNKAKQGPNNLTLLHSAIIKS 165
           +  + DE+G+TPLH AV + +      ++    +     +          T LH A+I +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR---QTPLHLAVITT 57

Query: 166 QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSD---EDDSLVYQHDCNG 222
              V  ++L          D   +     A           L D        +   + +G
Sbjct: 58  LPSV-VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI-LHLAAQNGHADVVVFILKQPEV 281
            + LH+A        ++ LL      I+ +D K+    L  A +N    +         V
Sbjct: 117 LTALHVAVNTECQETVQLLL-ERGADIDAVDIKSGRSPLIHAVENNSLSM---------V 166

Query: 282 EDLI------NSSDVDGNTPLHLAAINNHFNIILVL 311
           + L+      N+    G++ LH A+      ++  L
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.1 bits (191), Expect = 9e-17
 Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 35/247 (14%)

Query: 8   LFRALRHGYTDKVR---EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
           L  A+  G    V       +  G  +   +    T LH+A       +V  ++   +  
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS- 71

Query: 65  VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
               +   +T  H+A    +    +  +             D+  + + +G T LH AV 
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTL----DLEAR-NYDGLTALHVAVN 125

Query: 125 KCDGKMAFTMIKK--DPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLIN 182
               +    ++++  D +       A    +  + L  A+  +   +  ++L      +N
Sbjct: 126 TECQETVQLLLERGADID-------AVDIKSGRSPLIHAVENNSLSM-VQLLLQHGANVN 177

Query: 183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH-------DCNGQSPLHLASQNGQL 235
            +     + L  A+  G   +   L         +        +C+  +PL +A     +
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTL--------VRSGADSSLKNCHNDTPLMVARSRRVI 229

Query: 236 SILENLL 242
            IL    
Sbjct: 230 DILRGKA 236

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  105 bits (266), Expect = 2e-27
 Identities = 51/275 (18%), Positives = 80/275 (29%), Gaps = 54/275 (19%)

Query: 38  GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
            +  LH A        V E+L  +  L+   +     P+H +            +     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL---SK 58

Query: 98  GNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTL 157
             N    D      D+ G TP H A                       N           
Sbjct: 59  MENVNLDD----YPDDSGWTPFHIACS-------------------VGNLE--------- 86

Query: 158 LHSAIIKSQFVVMAKIL---EAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL 214
                       + K L     K D +N    +    L  A     F+++  L +   S 
Sbjct: 87  ------------VVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS- 132

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
           V   D   Q PLH A+  G L ++E L      ++ + D +    L  A   GH D  V 
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL 309
           ++++   E   +  D  G     +A         L
Sbjct: 193 LVEKYGAE--YDLVDNKGAKAEDVALNEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.0 bits (240), Expect = 9e-24
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 15/202 (7%)

Query: 115 GNTPLHNAVRKCD-GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKI 173
            N PLH A  + +  K+   +  K         K + G      LH ++      +    
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLL---LQKDQDG---RIPLHWSVSFQAHEI-TSF 54

Query: 174 LEAKRDLINVRDERNRN---PLRYAAALGHFKIACRL-SDEDDSLVYQHDCNGQSPLHLA 229
           L +K + +N+ D  + +   P   A ++G+ ++   L        + +    G + LHLA
Sbjct: 55  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114

Query: 230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSD 289
                  + + L+     S+   D  N+  LH AA  G   ++  +    +    +N  D
Sbjct: 115 VGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQD 171

Query: 290 VDGNTPLHLAAINNHFNIILVL 311
             G TPL  A    H +  ++L
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 88.3 bits (220), Expect = 6e-21
 Identities = 51/265 (19%), Positives = 85/265 (32%), Gaps = 52/265 (19%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L +A       KV+E      + +L   Q+G   LH +  F    +   +L    + V++
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN-VNL 64

Query: 68  PNHKSE---TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
            ++  +   TP H+A   GN    +          +       L K   +G T LH AV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPD-------LNKITNQGVTCLHLAV- 115

Query: 125 KCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR 184
                                                        +++ L      + ++
Sbjct: 116 ------------------GKKWFE---------------------VSQFLIENGASVRIK 136

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
           D+ N+ PL  AA++G  K+   L     S V   D  G +PL  A   G       L+  
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 245 YPDSIEFIDNKNRNILHLAAQNGHA 269
           Y    + +DNK      +A      
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNEQVK 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  104 bits (261), Expect = 7e-27
 Identities = 39/271 (14%), Positives = 76/271 (28%), Gaps = 60/271 (22%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
             + G   +  A          E+   + D++ +    S+T        G  G       
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTG------L 60

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
              N            ++ E  + PLH A +                     N +     
Sbjct: 61  IPSNYVA---------EQAESIDNPLHEAAK-------------------RGNLS----- 87

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
                             +     R  +N  D+     L +A   GH  I   L  + + 
Sbjct: 88  ----------------WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
            + Q +  G + LH A+  G   I++ LL       +  + + +    +A     A ++ 
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLK 190

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNH 304
                  V  L N+   +       + + +H
Sbjct: 191 KKQGTDAVRTLSNA---EDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.5 bits (246), Expect = 9e-25
 Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 18/205 (8%)

Query: 108 LRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQF 167
             K  + G   +  A+   + +    +  ++ + I   +       + T       K + 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITD------MSDTNWWKGTSKGRT 58

Query: 168 VVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLH 227
            ++        + +  + E   NPL  AA  G+        D     V   D  G + L+
Sbjct: 59  GLI------PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALY 111

Query: 228 LASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ-PEVEDLIN 286
            A   G   I+E L       +   +      LH AA  G+AD+V  +L +        +
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR----TD 167

Query: 287 SSDVDGNTPLHLAAINNHFNIILVL 311
             +++      +A      +++   
Sbjct: 168 LRNIEKKLAFDMATNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 37/268 (13%), Positives = 75/268 (27%), Gaps = 68/268 (25%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           +FRAL         E   +    I+  +   DT        G   L+       S+ V+ 
Sbjct: 16  VFRALYTFEPRTPDELY-IEEGDIIYITDMSDTNWWKGTSKGRTGLI------PSNYVAE 68

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
                + P+H AA+ GN    +  +      N            D+ G+T L+ A     
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVN----------GLDKAGSTALYWAC---- 114

Query: 128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRD-LINVRDE 186
                             +K                      + ++L  + +  +N +++
Sbjct: 115 ---------------HGGHKD---------------------IVEMLFTQPNIELNQQNK 138

Query: 187 RNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
                L  AA  G+  I   L    +          +   +    +A+     S+L+   
Sbjct: 139 LGDTALHAAAWKGYADIVQLLLAKGAR-----TDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 243 HSYPDSIEFIDNKNRNILHLAAQNGHAD 270
            +        + ++      +    H  
Sbjct: 194 GTDAV-RTLSNAEDYLDDEDSDLEHHHH 220

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  101 bits (254), Expect = 1e-25
 Identities = 55/280 (19%), Positives = 90/280 (32%), Gaps = 51/280 (18%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +G T L IA+  G                           +             F+   G
Sbjct: 9   DGFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVISDFIY-QG 46

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                     +  + D  G T LH A R      A  +++   +    N +   G    T
Sbjct: 47  A--------SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMG---RT 92

Query: 157 LLHSAIIKSQFVVMAKIL-EAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDED 211
            LH+A+      V  +IL   +   ++ R      PL  AA L    +   L    +D  
Sbjct: 93  PLHAAVSADAQGV-FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-- 149

Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
              V   D  G+S LH A+    +     LL     + +  +N+    L LAA+ G  + 
Sbjct: 150 ---VNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYET 205

Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
              +L         + +D     P  +A    H +I+ +L
Sbjct: 206 AKVLLDH-FAN--RDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 95.6 bits (239), Expect = 2e-23
 Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 13/210 (6%)

Query: 110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKD--PEPIRY------NNKAKQGPNNLTLLHSA 161
            R  +G TPL  A     G       +++  P  I        +   +      T LH A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
              S+    AK L       N++D   R PL  A +     +   L     + +     +
Sbjct: 65  ARYSRSDA-AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 222 GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV 281
           G +PL LA++     +LE+L+ +    +  +D+  ++ LH AA   + D  V +LK    
Sbjct: 124 GTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--- 179

Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +  +    TPL LAA    +    VL
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 85.2 bits (212), Expect = 1e-19
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 85/278 (30%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           T + G+TALH+AAR+        +L+  +D  ++ ++   TP+H A  A   G  QI +R
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
            +   +        L  R  +G TPL  A                    R   +      
Sbjct: 112 -NRATD--------LDARMHDGTTPLILAA-------------------RLAVEG----- 138

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
                           M + L      +N  D+  ++ L +AAA+ +   A         
Sbjct: 139 ----------------MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA--------V 174

Query: 214 LVYQH-------DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN 266
           ++ ++       +   ++PL LA++ G     + LL  + +  +  D+ +R    +A + 
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQER 233

Query: 267 GHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH 304
            H D+         V  L           L     ++H
Sbjct: 234 MHHDI---------VRLLD----------LEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 4e-12
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 219 DCNGQSPLHLASQNGQLSILENLL--HSYPDSIEF-----------IDNKNRNILHLAAQ 265
             +G +PL +AS +G      N       P  I              D      LHLAA+
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 266 NGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
              +D    +L+        N  D  G TPLH A   +   +  +L RN
Sbjct: 67  YSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (256), Expect = 1e-25
 Identities = 43/304 (14%), Positives = 90/304 (29%), Gaps = 38/304 (12%)

Query: 11  ALRHGYTDKVREF----ARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
              H +           + +          +G          G  +L   ++        
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--- 58

Query: 67  VPNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
                  +PMH AA  G+  + +  +   G   N              +  +PLH A   
Sbjct: 59  -----DWSPMHEAAIHGHQLSLRNLIS-QGWAVN----------IITADHVSPLHEACLG 102

Query: 126 CDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRD 185
                   ++K   +    N          T L +A +   +     +L      +    
Sbjct: 103 GHLSCVKILLKHGAQV---NGVTADW---HTPLFNACVSGSWDC-VNLLLQHGASVQPES 155

Query: 186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSY 245
           +   +P+  AA  GH +    L       +     +  +PL+LA +N Q + ++ LL S 
Sbjct: 156 D-LASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 246 PDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHF 305
            D +        + LH   +    ++   ++          + + +G  P+ L    +  
Sbjct: 214 AD-VN-QGKGQDSPLHAVVRTASEELACLLMDF---GADTQAKNAEGKRPVELVPPESPL 268

Query: 306 NIIL 309
             + 
Sbjct: 269 AQLF 272

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 91.4 bits (228), Expect = 1e-21
 Identities = 39/252 (15%), Positives = 81/252 (32%), Gaps = 24/252 (9%)

Query: 25  RLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN 84
           RL  N ++G + +  + +H AA  GH++ +  ++      V++      +P+H A   G+
Sbjct: 46  RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGH 104

Query: 85  FGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIR 143
               +I ++ HG   N              + +TPL NA           +++       
Sbjct: 105 LSCVKILLK-HGAQVN----------GVTADWHTPLFNACVSGSWDCVNLLLQHGASV-- 151

Query: 144 YNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKI 203
                       + +H A  +   V     L A    I+ +      PL  A        
Sbjct: 152 --QPESDL---ASPIHEAARRGH-VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 205

Query: 204 ACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLA 263
             +L +    +         SPLH   +     +   L+  +    +  + + +  + L 
Sbjct: 206 VKKLLESGADV--NQGKGQDSPLHAVVRTASEELACLLM-DFGADTQAKNAEGKRPVELV 262

Query: 264 AQNGHADVVVFI 275
                   +   
Sbjct: 263 PPESPLAQLFLE 274

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 88.3 bits (220), Expect = 2e-20
 Identities = 41/234 (17%), Positives = 86/234 (36%), Gaps = 25/234 (10%)

Query: 78  VAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKK 137
           + +   +   +   +     G++  + D   ++   +G+ P             F  I+ 
Sbjct: 1   MGSSHHHHHHSSGLVP---RGSHMASMDG--KQGGMDGSKPAGPR--------DFPGIRL 47

Query: 138 DPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAA 197
              P+     A    ++ + +H A I     +  + L ++   +N+    + +PL  A  
Sbjct: 48  LSNPL--MGDAV---SDWSPMHEAAIHGH-QLSLRNLISQGWAVNIITADHVSPLHEACL 101

Query: 198 LGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR 257
            GH      L     + V     +  +PL  A  +G    +  LL  +  S++  ++   
Sbjct: 102 GGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVN-LLLQHGASVQ-PESDLA 158

Query: 258 NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           + +H AA+ GH + V  ++        I+       TPL+LA  N     +  L
Sbjct: 159 SPIHEAARRGHVECVNSLIAY-GGN--IDHKISHLGTPLYLACENQQRACVKKL 209

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  100 bits (253), Expect = 2e-25
 Identities = 51/281 (18%), Positives = 91/281 (32%), Gaps = 65/281 (23%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
                +  A ++G      E+++   D V  P+ ++ T +H AA        + ++   G
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYIS-KG 65

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                     + +   +  +TPLH A R                     + +        
Sbjct: 66  A--------IVDQLGGDLNSTPLHWATR-------------------QGHLS-------- 90

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDEDD 212
                        M   L       ++ D    + +  AA  GH  I   L     D   
Sbjct: 91  -------------MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD--- 134

Query: 213 SLVYQHDCNGQSPLHLASQNG-QLSILENLLHSYPDSIEFIDNKNRNI-LHLAAQNGHAD 270
             V   D NG +PL  A+     +     LL      +   D  ++N  LH A   G+  
Sbjct: 135 --VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTT 191

Query: 271 VVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           V+  +L   E    +++ ++ G + L LA    +  +I  L
Sbjct: 192 VISLLL---EAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 249 IEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLI------NSSDVDGNTPLHLAAIN 302
           +  ID+ +   +  A Q G  +            +L+         D +  T LH AAIN
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERC---------RELVEAGYDVRQPDKENVTLLHWAAIN 52

Query: 303 NHFNIILVL 311
           N  +++   
Sbjct: 53  NRIDLVKYY 61

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQI 90
              + +TALH A   G+  ++  +L+  ++ V   N K E+ + +A +  N      
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINH 228

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 98.4 bits (246), Expect = 2e-24
 Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 15/207 (7%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY-NNKAKQGPNNLTLLHSAIIKSQFVVM 170
            E+G++ LH A+   +  +   +I++    + + N +        T LH A+I +Q  + 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ---QTPLHLAVITNQPEIA 61

Query: 171 AKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL-----SDEDDSLVYQHDCNGQSP 225
             +L A  D   +RD R   PL  A   G       L     +    S++   + NG + 
Sbjct: 62  EALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 226 LHLASQNGQLSILENLLHSYPDSIEFIDNKN-RNILHLAAQNGHADVVVFILKQPEVEDL 284
           LHLAS +G L I+E L+    D +   +  N R  LHLA    + D+V  +LK       
Sbjct: 121 LHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GAD 176

Query: 285 INSSDVDGNTPLHLAAINNHFNIILVL 311
           +N     G +P  L        I   L
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 95.3 bits (238), Expect = 2e-23
 Identities = 44/272 (16%), Positives = 82/272 (30%), Gaps = 53/272 (19%)

Query: 37  NGDTALHIAARFGHEILVMEILK---HQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           +GD+ LH+A     + L ME+++        ++  N+  +TP+H+A        A+  + 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 94  PHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGP 152
             G +             RD  GNTPLH A  +        + +    P  ++       
Sbjct: 67  -AGCDPE----------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI------ 109

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
                                       +   +      L  A+  G+  I   L     
Sbjct: 110 ----------------------------LKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
            +  Q  CNG++ LHLA       ++  LL      +  +  +  +   L        + 
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQ 200

Query: 273 VFILKQPEVEDLINSSDVDGNTPLHLAAINNH 304
              L Q  +E        +          +  
Sbjct: 201 QQ-LGQLTLE--NLQMLPESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQ-PEVEDLINSSDVDGNTPLHLAAINNHFNIILV 310
           +     + LHLA  +    + + +++Q       +N  +    TPLHLA I N   I   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 311 L 311
           L
Sbjct: 64  L 64

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPH 95
            NG TALH+A    +  LV  +LK  +D V+   ++  +P  +     +    Q   +  
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-L 206

Query: 96  GNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
                     + L+    E          
Sbjct: 207 T--------LENLQM-LPESEDEESYDTE 226

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.7 bits (247), Expect = 4e-24
 Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 33/278 (11%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +       A   G    V+ +L+  +D ++  N    T +H A    N    +  +  +G
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVE-NG 96

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            N N          + D EG  PLH A       +A  +I +        +         
Sbjct: 97  ANIN----------QPDNEGWIPLHAAASCGYLDIAEYLISQGA------HVGAVNSEGD 140

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
           T L  A  ++         E  ++ +N +        +    +        L+    +  
Sbjct: 141 TPLDIAEEEAM-------EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN-D 192

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV-VF 274
            +H  +G + LH+A+  G   +L+ L+      +   D      LH AA  G  +   + 
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
           +    +    + + +  G T   +A  +    +  +  
Sbjct: 252 VENLCD----MEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.9 bits (237), Expect = 9e-23
 Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 32/276 (11%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
                  +    G E   +E    +     V        +  A  +G+       +   G
Sbjct: 7   KQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLE-RG 63

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            + N            + +G T LH A    +  M   +++        N    +G    
Sbjct: 64  ADIN----------YANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEG---W 107

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
             LH+A       + A+ L ++   +   +     PL  A      ++         + V
Sbjct: 108 IPLHAAASCGYLDI-AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL-------QNEV 159

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
            +   + ++      +       +  L+S   +           LH+AA  G+ +V+  +
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQ-WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 276 LKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           ++    +  +N  D DG TPLH AA         +L
Sbjct: 219 IQA-RYD--VNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 44/260 (16%), Positives = 91/260 (35%), Gaps = 43/260 (16%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +G TALH A    +  +V  ++++ ++ ++ P+++   P+H AA  G    A+  +   G
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLIS-QG 129

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                     +    + EG+TPL  A  +   ++    +             +QG +   
Sbjct: 130 A--------HVGAV-NSEGDTPLDIAEEEAMEELLQNEV------------NRQGVDIEA 168

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY 216
                          + L +         +     L  AAA G+ ++          L+ 
Sbjct: 169 ARKEEERIMLRDA-RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL--------KLLI 219

Query: 217 QH-------DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
           Q        D +G +PLH A+  G+      +L      +E ++   +    +A ++   
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACR-ILVENLCDMEAVNKVGQTAFDVADEDILG 278

Query: 270 DVVVFILKQPEVEDLINSSD 289
            +     KQ     L +   
Sbjct: 279 YLEELQKKQ---NLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 1e-16
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 12/168 (7%)

Query: 145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
                +                     +    KR    V+ + +      A + G  +  
Sbjct: 2   KMADAKQ---KRNEQLKRWIGSETD-LEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEV 56

Query: 205 CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA 264
            RL +     +   + +G + LH A  +  + +++ L+     +I   DN+    LH AA
Sbjct: 57  LRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAA 114

Query: 265 QNGHADVVVFILKQ-PEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
             G+ D+  +++ Q       + + + +G+TPL +A       ++   
Sbjct: 115 SCGYLDIAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 19/204 (9%)

Query: 108 LRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQF 167
           ++  D +                    + K     R   K K   +    L +       
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVK-----RKKTKVK-FDDGAVFLAACSSGDTE 54

Query: 168 VVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLH 227
            V    L  +   IN  +      L  A    +  +   L +   + + Q D  G  PLH
Sbjct: 55  EV--LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLH 111

Query: 228 LASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINS 287
            A+  G L I E  L S    +  ++++    L +A +    +++         ++ +N 
Sbjct: 112 AAASCGYLDIAE-YLISQGAHVGAVNSEGDTPLDIAEEEAMEELL---------QNEVNR 161

Query: 288 SDVDGNTPLHLAAINNHFNIILVL 311
             VD              +    L
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 3   TVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQS 62
            ++       R    D  R++        +  +++G TALH+AA  G+  ++  +++ + 
Sbjct: 165 DIEAARKEEERIMLRD-ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 63  DLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNA 122
           D V++ ++   TP+H AA  G   A +I +    +              ++ G T    A
Sbjct: 224 D-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME----------AVNKVGQTAFDVA 272

Query: 123 VRKCDGKMAFTMIKKD 138
                G +     K++
Sbjct: 273 DEDILGYLEELQKKQN 288

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.9 bits (240), Expect = 8e-24
 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 106 DILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS 165
            +  + D  G T LH A R      A  +++   +    N +   G    T LH+A+   
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMG---RTPLHAAVSAD 69

Query: 166 QFVVMAKIL-EAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDC 220
               + +IL   +   ++ R      PL  AA L    +   L    +D     V   D 
Sbjct: 70  A-QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-----VNAVDD 123

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV-VFILKQP 279
            G+S LH A+    +     LL     + +  +N+    L LAA+ G  +   V +    
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182

Query: 280 EVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                 + +D     P  +A    H +I+ +L
Sbjct: 183 N----RDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 76.7 bits (190), Expect = 9e-17
 Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 26/213 (12%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           T + G+TALH+AAR+        +L+  +D  ++ ++   TP+H A  A   G  QI +R
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 79

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
            +   +        L  R  +G TPL  A R     M   +I    +    N     G  
Sbjct: 80  -NRATD--------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLG-- 125

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SD 209
             + LH A   +  V  A +L       ++++ R   PL  AA  G ++ A  L    ++
Sbjct: 126 -KSALHWAAAVNN-VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183

Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
                    D   + P  +A +     I+  L 
Sbjct: 184 -----RDITDHMDRLPRDIAQERMHHDIVRLLD 211

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 97.6 bits (244), Expect = 8e-24
 Identities = 45/305 (14%), Positives = 92/305 (30%), Gaps = 74/305 (24%)

Query: 11  ALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNH 70
            +    + +++ F  L+         +G +A + A    +  LV  +L   +      N 
Sbjct: 6   RINTWKSKQLKSF--LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL----KNL 59

Query: 71  K-SETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG 128
             +E P+H AA   +    +I +   G + +          + D++GNT L+ AV     
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLF-SGLDDS----------QFDDKGNTALYYAV----- 103

Query: 129 KMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN 188
                            N                         K+   K   +    +  
Sbjct: 104 --------------DSGNMQ---------------------TVKLFVKKNWRLMFYGKTG 128

Query: 189 RN-PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD 247
                 +A  L    I      E  S          S +H+  +NG + ++  LL  Y  
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLL-DYMT 185

Query: 248 SIEFIDNKNR-NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN 306
           S    ++      + LA  N   ++         ++ L    D++  +      + +   
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEM---------LQALF-KYDINIYSANLENVLLDDAE 235

Query: 307 IILVL 311
           I  ++
Sbjct: 236 IAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 65/239 (27%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
            G+TAL+ A   G+   V   +K    L+       +T  + A    +      F+    
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EI 152

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                               + +H  +                   +  +          
Sbjct: 153 PSTF----------DLAILLSCIHITI-------------------KNGHVD-------- 175

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP-LRYAAALGHFKIACRLSDEDDSLV 215
                        M  +L       N  +     P ++ A      ++           +
Sbjct: 176 -------------MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML--------QAL 214

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN-ILHLAAQNGHADVVV 273
           +++D N  S            I + ++  + +      + +    L +   N   +++ 
Sbjct: 215 FKYDINIYSANLENVLLDDAEIAKMIIEKHVE----YKSDSYTKDLDIVKNNKLDEIIS 269

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                  +  +   L   +       +DV G++  + A  +N+  ++  L
Sbjct: 5   SRINTWKSKQLKSFLSSKD----TFKADVHGHSASYYAIADNNVRLVCTL 50

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 93.2 bits (233), Expect = 2e-23
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
             L  A  +     + ++L  +    +  +   +  L      G   IA  L  +  S  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGAS-P 61

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
              D +G SP+H A++ G L  L+ L+  +   +   D      +HLA Q GH  VV F+
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 276 LKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
             + +    ++  D  G TPL LA      +++ +L
Sbjct: 121 AAESD----LHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 5e-13
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 222 GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ-PE 280
               L  A+  G +  +  LLH      + ++   +  L +    G   + + +LKQ   
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                N  D  G +P+H AA     + + VL
Sbjct: 61  ----PNVQDTSGTSPVHDAARTGFLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 57/210 (27%)

Query: 71  KSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKM 130
           ++   +  AA  G+    +  +       +           +  G T L   +       
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPD---------ALNRFGKTALQVMM------- 44

Query: 131 AFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN 190
                        + + A                     +A  L  +    NV+D    +
Sbjct: 45  -------------FGSTA---------------------IALELLKQGASPNVQDTSGTS 70

Query: 191 PLRYAAALGHFKIACRLSDE--DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS 248
           P+  AA  G       L +   D   V   D  G  P+HLA Q G  +++   L +  D 
Sbjct: 71  PVHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVS-FLAAESD- 125

Query: 249 IEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           +   D +    L LA Q G  D+V  +   
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 55/206 (26%)

Query: 38  GDTALHIAARFGHEILVMEIL-KHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
               L  AA  G    V  +L +         N   +T + V    G+   A   ++  G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVH-PDALNRFGKTALQVMMF-GSTAIALELLK-QG 58

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
              N          +D  G +P+H+A                    R             
Sbjct: 59  ASPN---------VQDTSGTSPVHDAA-------------------RTGFLD-------- 82

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY 216
                          K+L      +NV D     P+  A   GH  +   L+ E D  ++
Sbjct: 83  -------------TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD--LH 127

Query: 217 QHDCNGQSPLHLASQNGQLSILENLL 242
           + D  G +PL LA Q G   +++ L 
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 55/198 (27%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A   G   +VR             ++ G TAL +   FG   + +E+LK  +   +V
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNV 63

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
            +    +P+H AAR G     ++ +  HG + N            D  G  P+H AV   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVE-HGADVN----------VPDGTGALPIHLAV--- 109

Query: 127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDE 186
                           +  + A                     +   L A+ D ++ RD 
Sbjct: 110 ----------------QEGHTA---------------------VVSFLAAESD-LHRRDA 131

Query: 187 RNRNPLRYAAALGHFKIA 204
           R   PL  A   G   + 
Sbjct: 132 RGLTPLELALQRGAQDLV 149

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQI 90
              G   +H+A + GH   V+  L  +SD +   + +  TP+ +A + G      I
Sbjct: 98  DGTGALPIHLAVQEGH-TAVVSFLAAESD-LHRRDARGLTPLELALQRGAQDLVDI 151

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.5 bits (231), Expect = 6e-23
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 7/157 (4%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA-CRLSDEDDSL 214
             +H    + +   + + L    +L+N  DER   PL +A+A G  +     L    D  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-- 61

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
            +      +S L LAS  G   I+  LL    D I   D      L  A +  H   V  
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           +L +      + +    G TP+ LA    +  +  V+
Sbjct: 121 LLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 13/182 (7%)

Query: 115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKIL 174
            +  +H    + +       ++K    +  N   ++G    T L  A    +   +  +L
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERG---FTPLIWASAFGEIETVRFLL 56

Query: 175 EAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED-DSLVYQHDCNGQSPLHLASQNG 233
           E   D  ++  +   + L  A+  G+  I   L + D D  +  +D NG +PL  A +  
Sbjct: 57  EWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVD--INIYDWNGGTPLLYAVRGN 113

Query: 234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGN 293
            +  +E LL    D +    +     + LA   G+  V   I         +  S++   
Sbjct: 114 HVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENH---ILKLFQSNLVPA 169

Query: 294 TP 295
            P
Sbjct: 170 DP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 55/207 (26%)

Query: 38  GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG- 96
              ++H  A  G    + E L+   +LV+ P+ +  TP+  A+  G     +  +   G 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGA 60

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
           + +             +E  + L  A                         +  G     
Sbjct: 61  DPH----------ILAKERESALSLA-------------------------STGG----- 80

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED-DSLV 215
             ++ I          +L  +   IN+ D     PL YA    H K    L     D  +
Sbjct: 81  --YTDI--------VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD--L 128

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLL 242
                +G +P+ LA   G   + + + 
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIE 155

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.4 bits (145), Expect = 6e-11
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           + +    G  D+++E  R   N +    + G T L  A+ FG    V  +L+  +D   +
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
              + E+ + +A+  G      + +     + N            D  G TPL  AVR 
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLE-RDVDIN----------IYDWNGGTPLLYAVRG 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.6 bits (99), Expect = 7e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQI 90
             NG T L  A R  H   V  +L   +D ++       TPM +A   G     Q+
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQV 153

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 91.1 bits (227), Expect = 6e-22
 Identities = 45/281 (16%), Positives = 80/281 (28%), Gaps = 74/281 (26%)

Query: 38  GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
            ++ L +AA+      + ++LK +   V       ET +H+AA   N  AA + M     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM-EAAP 61

Query: 98  GNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTL 157
                           EG T LH AV                      N           
Sbjct: 62  ELVFEPMT----SELYEGQTALHIAV-------------------INQNVN--------- 89

Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ 217
                       + + L A+   ++ R   +    R    + +                 
Sbjct: 90  ------------LVRALLARGASVSARATGSVFHYRPHNLIYY----------------- 120

Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
               G+ PL  A+  G   I+  L+  +   I   D+    +LH+     +      +  
Sbjct: 121 ----GEHPLSFAACVGSEEIVRLLI-EHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175

Query: 278 -------QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                     ++ L    +  G TP  LA +  +  +   L
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 40/252 (15%), Positives = 74/252 (29%), Gaps = 58/252 (23%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A +      + +  +  G  +      G+TALHIAA + +    M +++   +LV  
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 68  PNHKS----ETPMHVAARAGNFGAAQIFMRPHG---N-GNNTGTFDDILRKRDEEGNTPL 119
           P        +T +H+A    N    +  +   G   +       F          G  PL
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 120 HNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRD 179
             A                       ++                      + ++L     
Sbjct: 126 SFAA-------------------CVGSEE---------------------IVRLLIEHGA 145

Query: 180 LINVRDERNRNPLRYAAALGHFKIACRLS---------DEDDSLVYQHDCNGQSPLHLAS 230
            I  +D      L       +   AC++          D   SL    +  G +P  LA 
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205

Query: 231 QNGQLSILENLL 242
             G + + ++L+
Sbjct: 206 VEGNIVMFQHLM 217

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 88.3 bits (220), Expect = 4e-21
 Identities = 38/207 (18%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVM 170
           +  E    L  A ++   K+   +     +    +    +G    T L+ A+  +   + 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQV---DEVDTEG---NTPLNIAVHNNDIEI- 54

Query: 171 AKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS 230
           AK L  +   IN+++  + +P  YA A G  +I   +       + +H+  G + L  A+
Sbjct: 55  AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA 114

Query: 231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA-----QNGHADVVVFILKQ-PEVEDL 284
           + G +  ++ LL    + I+F ++     L  A         + D+V  +++   +    
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---- 170

Query: 285 INSSDVDGNTPLHLAAINNHFNIILVL 311
            +  D  G T +  A    +  I  +L
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.0 bits (196), Expect = 9e-18
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
           ++       L  A      K+   L D     V + D  G +PL++A  N  + I + L+
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
               D I   ++ + +    A   G  +++ ++LK    +  +N  +  G   L  AA  
Sbjct: 60  DRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPD--LNKHNRYGGNALIPAAEK 116

Query: 303 NHFNII 308
            H + +
Sbjct: 117 GHIDNV 122

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
                L  A +   + +   +       V   + +  TP+++A    +   A+  +   G
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALID-RG 62

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            + N           ++   ++P   A  +   ++   M+K     +  N   + G    
Sbjct: 63  ADIN----------LQNSISDSPYLYAGAQGRTEILAYMLKHATPDL--NKHNRYG---G 107

Query: 156 TLLHSAIIKSQFVVMAKIL-EAKRDLINVRDERNRNPLRYAAAL-----GHFKIACRLSD 209
             L  A  K       K+L E  R+ I+ +++     L  A  L      +  I   L +
Sbjct: 108 NALIPAAEKGHIDN-VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 210 ED-DSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
              D      D +G++ +  A+Q G   I + L 
Sbjct: 167 NGAD--QSIKDNSGRTAMDYANQKGYTEISKILA 198

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 88.4 bits (220), Expect = 8e-21
 Identities = 43/296 (14%), Positives = 78/296 (26%), Gaps = 79/296 (26%)

Query: 22  EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR 81
           E  ++ G+R   T+  G     I  + GH    +      +D+      + ETP   AAR
Sbjct: 2   EVNKIIGSR---TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAAR 54

Query: 82  AGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPE 140
             +  A    +     + +            DE G T L                     
Sbjct: 55  KADEQALSQLL--EDRDVD----------AVDENGRTALLFVAG---------------- 86

Query: 141 PIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN-RNPLRYAAALG 199
                +                         ++L      ++ RD R     L  AA   
Sbjct: 87  ---LGSDK---------------------CVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 200 HFKIACRLSDED-DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN 258
             ++   L +   D  +   D  G + L LA +  + +   N +         I  +   
Sbjct: 123 RPEVVEALVELGAD--IEVEDERGLTALELAREILKTTPKGNPMQFGRR----IGLEKVI 176

Query: 259 ILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
            +       +A+V             I      G    +L    +  +   V   +
Sbjct: 177 NVLEGQVFEYAEVD-----------EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 35/302 (11%), Positives = 66/302 (21%), Gaps = 83/302 (27%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
                + G++      +      +       +T    AAR   E   +  L    D V  
Sbjct: 19  YLIEWKDGHSPSW-VPSSYIAADV---VSEYETPWWTAARKADEQ-ALSQLLEDRD-VDA 72

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
            +    T +   A  G+    ++     G         D+  +    G T LH A     
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAE-AGA--------DLDHRDMRGGLTALHMAA---- 119

Query: 128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDER 187
                           Y                         + + L      I V DER
Sbjct: 120 ---------------GYVRPE---------------------VVEALVELGADIEVEDER 143

Query: 188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS--PLHLASQNGQLSILENLLHSY 245
               L  A  +               + +      +    +          + E +    
Sbjct: 144 GLTALELAREILKTTPKGNP------MQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK-- 195

Query: 246 PDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDV---DGNTPLHLAAIN 302
                    K +++ +L       D               + ++    D    L  A   
Sbjct: 196 -------RGKGKDVEYLVRWKDGGDCEWVKGV--------HVAEDVAKDYEDGLEYAVAE 240

Query: 303 NH 304
           + 
Sbjct: 241 SV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 31/232 (13%), Positives = 59/232 (25%), Gaps = 41/232 (17%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
            + A R      + +   L    +    +NG TAL   A  G +  V  + +  +DL   
Sbjct: 49  WWTAARKADEQALSQL--LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
                 T +H+AA        +  +   G +              DE G T L  A    
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVE-LGADIE----------VEDERGLTALELAREIL 155

Query: 127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDE 186
                   ++            + G   +  +                 A+ D I  +  
Sbjct: 156 KTTPKGNPMQFG---------RRIGLEKVINVLEG---------QVFEYAEVDEIVEKRG 197

Query: 187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN---GQSPLHLASQNGQL 235
           + ++                        V+  +      +  L  A     +
Sbjct: 198 KGKDVEYLVRWKDGGDCEWVK------GVHVAEDVAKDYEDGLEYAVAESVI 243

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.3 bits (215), Expect = 9e-21
 Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 14/163 (8%)

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----S 208
            N   +H    + + + +A  +E +   IN  DE    PL +AAA G   +   L    +
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 209 DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH 268
           D             +S L LA   G   I++ LL    D +   D      L  A    H
Sbjct: 61  D-----PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNH 114

Query: 269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
              V  +L   E           G   + LA    + ++  V+
Sbjct: 115 VKCVKMLL---ESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.0 bits (165), Expect = 9e-14
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKIL 174
            +  +H    + +     T I+++      N+  ++G    T L  A    Q  V+  +L
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVI---NHTDEEG---FTPLMWAAAHGQIAVVEFLL 56

Query: 175 EAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ 234
           +   D   +  +   + L  A + G+  I   L D     V ++D NG +PL  A     
Sbjct: 57  QNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNH 114

Query: 235 LSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           +  ++ LL S  D      +   N + LA   G+  V   I   
Sbjct: 115 VKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.0 bits (152), Expect = 5e-12
 Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 56/208 (26%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
               ++H  A  G  + +   ++ ++  ++  + +  TP+  AA  G     +  ++ +G
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NG 59

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            +               +   + L  A                           +G    
Sbjct: 60  ADPQ----------LLGKGRESALSLA-------------------------CSKG---- 80

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED-DSL 214
              ++ I         K+L      +N  D     PL YA    H K    L +   D  
Sbjct: 81  ---YTDI--------VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-- 127

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLL 242
                 +G + + LA   G  S+ + + 
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQI 90
              NG T L  A    H   V  +L+  +D  ++        M +A   G     Q+
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQV 153

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.9 bits (218), Expect = 2e-20
 Identities = 44/277 (15%), Positives = 72/277 (25%), Gaps = 50/277 (18%)

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC- 126
           P       +  A    N    +  +          T  D   K  E G T L  A+    
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT--DSEFKDPETGKTCLLKAMLNLH 66

Query: 127 --DGKMAFTMIKKDPEPIRYNNKAKQGPNNL-----TLLHSAIIKSQFVVM--------- 170
                    ++    +             +      T LH AI +    ++         
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 171 ----AKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL--VYQHDCNGQS 224
               A     K+            PL  AA      I   L         +   D  G +
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 225 PLHLASQNGQLSILENL---------------LHSYPDSIEFIDNKNRNILHLAAQNGHA 269
            LH   +    ++                   LH      E  + K    L LAA +G  
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246

Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN 306
            V+ +IL++          ++      H AA ++H +
Sbjct: 247 GVLAYILQR----------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 75.2 bits (185), Expect = 7e-16
 Identities = 34/210 (16%), Positives = 60/210 (28%), Gaps = 52/210 (24%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDL-------------VSVPNHKSETPMHVAARAG 83
            G TALHIA    +  LV  ++++ +D+                  +  E P+ +AA   
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

Query: 84  NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIR 143
                +  +               +  RD  GNT LH  V   D  +  T          
Sbjct: 160 QLAIVKFLL-------QNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS----- 207

Query: 144 YNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKI 203
                         +               L     L  + + +   PL  AA+ G   +
Sbjct: 208 ----------MYNEILIL---------GAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248

Query: 204 ACRLSDEDDSLVYQHDCNGQSPLHLASQNG 233
                    + + Q + +     H A+ + 
Sbjct: 249 L--------AYILQREIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 31/165 (18%)

Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDC-------NGQSPLHLAS--- 230
                  +R  +  A A  + +    L         +           G++ L  A    
Sbjct: 6   EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 231 QNGQLSILENLLHSYPDSIEFIDNKNRNI----------LHLAAQNGHADVVVFILKQ-- 278
            NGQ   +  LL     +       N +           LH+A +  +  +V  +++   
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 279 ---------PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
                       +         G  PL LAA  N   I+  L +N
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 82.0 bits (204), Expect = 4e-19
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 14/171 (8%)

Query: 145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
           ++    G +    L  A    +     +IL A    +N  D     PL  AA  GH +I 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGR-DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 205 CRL----SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNIL 260
             L    +D     V   D  G +PL LA+  G L I+E LL      +   D +    L
Sbjct: 64  EVLLKNGAD-----VNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPL 117

Query: 261 HLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           HLAA  GH ++V  +LK       +N+ D  G T   ++  N + ++  +L
Sbjct: 118 HLAAMFGHLEIVEVLLKN---GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 54/207 (26%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +    L  AAR G +  V  ++ + +D V+  +    TP+H+AA  G+    ++ ++ +G
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLK-NG 70

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            + N            D  G TPL  A                     + +         
Sbjct: 71  ADVN----------AVDHAGMTPLRLAA-------------------LFGHLE------- 94

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
                         + ++L      +N  D     PL  AA  GH +I   L     + V
Sbjct: 95  --------------IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADV 139

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLL 242
              D  G++   ++  NG   + E L 
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 83.4 bits (206), Expect = 4e-19
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +     ++A     + L   IL  +S   +  +  S T +H A  AG+    +  ++  G
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LG 63

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
              N           +D+ G +PLH A      ++   ++ K       N       N  
Sbjct: 64  VPVN----------DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ------NGC 107

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
           T LH A  K++  +   +LE   +  + +D  +   +  AAA G+ K+   +     +  
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMV-HILLFYKAST 165

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
              D  G +PLHLA    ++   + L+ +   SI   + + +  L +A   G   +++  
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

Query: 276 LKQ 278
           L +
Sbjct: 223 LAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 77.2 bits (190), Expect = 8e-17
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----S 208
           +N+ + + A    +   + + + A + L    D+ +R  L +A + GH +I   L     
Sbjct: 6   SNIMICNLAY-SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 209 DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH 268
                 V   D  G SPLH+A+  G   I++ LL      +  ++      LH AA    
Sbjct: 65  P-----VNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNR 118

Query: 269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
            ++ V +L+        ++ D    T +H AA   +  ++ +L   
Sbjct: 119 HEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 43/242 (17%), Positives = 74/242 (30%), Gaps = 57/242 (23%)

Query: 74  TPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAF 132
              ++A         +  +                  + D++  T LH A          
Sbjct: 9   MICNLAYSGKLDELKERILA-DKSLAT----------RTDQDSRTALHWACS-------- 49

Query: 133 TMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL 192
                        +                       + + L      +N +D+   +PL
Sbjct: 50  -----------AGHTE---------------------IVEFLLQLGVPVNDKDDAGWSPL 77

Query: 193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFI 252
             AA+ G  +I  +      + V   + NG +PLH A+   +  I   LL     + +  
Sbjct: 78  HIAASAGXDEIV-KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135

Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
           D+ +   +H AA  G+  +V  +L         N  D +GNTPLHLA           L 
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 313 RN 314
             
Sbjct: 193 TQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 21/207 (10%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPH 95
           Q+  TALH A   GH  +V  +L+     V+  +    +P+H+AA AG     +  +   
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 96  GNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            + N            ++ G TPLH A  K   ++A  +++    P   ++       + 
Sbjct: 97  AHVN----------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH------YDA 140

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
           T +H A  K    ++  +L  K    N++D     PL  A      + A  L  +  S +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-I 198

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLL 242
           Y  +   ++PL +A   G L ++   L
Sbjct: 199 YIENKEEKTPLQVAK--GGLGLILKRL 223

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 13/164 (7%)

Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL---- 207
           P  +  + +   +   V +   L+   + +N  D+   +PL +A   G   +   L    
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 208 SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG 267
           +      +   +    +PLHLA+ +G   I++ LL  Y   I  ++      LH A   G
Sbjct: 63  AR-----INVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWG 116

Query: 268 HADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
              V   ++       L++  +  G  P+  A       +    
Sbjct: 117 QDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 81.3 bits (202), Expect = 8e-19
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
                + +      G+        D  ++ + Q D +G SPLH A + G+ +++E L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-M 60

Query: 245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH 304
               I  ++  +   LHLAA +GH D+V  +L+  + +  IN+ +  GN PLH A     
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KAD--INAVNEHGNVPLHYACFWGQ 117

Query: 305 FNIILVL 311
             +   L
Sbjct: 118 DQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.2 bits (181), Expect = 7e-16
 Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 60/233 (25%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
                +    R G+ + V   L +  + ++  +    +P+H A R G     ++ +   G
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RG 62

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
              N            +   +TPLH A                     + ++        
Sbjct: 63  ARIN----------VMNRGDDTPLHLAAS-------------------HGHRD------- 86

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
                         + + L   +  IN  +E    PL YA   G  ++A  L     +LV
Sbjct: 87  --------------IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALV 131

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH 268
              +  G+ P+  A    +  + E          +   N NR         G 
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERA-------EKMGQNLNRIPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 33/201 (16%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMA 171
             E    +    R+ +       +      +  N     G    + LH A  + +  V  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDL--NQGDDHG---FSPLHWACREGRSAV-V 55

Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH-------DCNGQS 224
           ++L  +   INV +  +  PL  AA+ GH  I           + Q+       + +G  
Sbjct: 56  EMLIMRGARINVMNRGDDTPLHLAASHGHRDIV--------QKLLQYKADINAVNEHGNV 107

Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
           PLH A   GQ  + E+L+ +    +   +      +  A       +          E  
Sbjct: 108 PLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELL---------RERA 157

Query: 285 INS-SDVDGNTPLHLAAINNH 304
                +++   P         
Sbjct: 158 EKMGQNLN-RIPYKDTFWKGT 177

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 36/318 (11%), Positives = 79/318 (24%), Gaps = 52/318 (16%)

Query: 3   TVDHKLFRALRHGYTDKVREFARL--NGNRILGTSQNGDTALHIAARFGHEILVMEILKH 60
             +   F A   G +  +     L  +   +         A  +AA  GH  ++  + + 
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 61  QSDLVSV-PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPL 119
               +      ++     +AA  G+                             E     
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA--------MIQAENYYAF 202

Query: 120 HN-AVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKR 178
              AV +    +   ++              +           +           +    
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEY------GEKYVNPF--------IARHV 248

Query: 179 DLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
           + +        +  + +   G F +          +       G   L    +     +L
Sbjct: 249 NRLKE----MHDAFKLSNPDGVFDL----------VTKSECLQGFYMLRNLIRRNDEVLL 294

Query: 239 ENL--LHSYPD-----SIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS--- 288
           +++  L S P          I      +L LA + G+      +L  P V  L  ++   
Sbjct: 295 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYY 354

Query: 289 --DVDGNTPLHLAAINNH 304
             +  G   L   A+ +H
Sbjct: 355 INETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.6 bits (183), Expect = 3e-15
 Identities = 36/282 (12%), Positives = 78/282 (27%), Gaps = 41/282 (14%)

Query: 37  NGDTALHIAARFGHE--ILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRP 94
             +    +AA  G    +  + +L    ++V V   ++     +AA  G+          
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 95  HGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNN 154
                              E       A       +   + +  P       +A+   N 
Sbjct: 151 APTEIMA--------MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE---NY 199

Query: 155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL 214
                +A+ +    V+  +L+    L             +    G   +   ++   + L
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVML--------AYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA---DV 271
              HD        L++ +G   ++                +   +L    +       D 
Sbjct: 252 KEMHD-----AFKLSNPDGVFDLVTKSE----------CLQGFYMLRNLIRRNDEVLLDD 296

Query: 272 VVFILKQPEVEDL--INSSDVDGNTPLHLAAINNHFNIILVL 311
           + F+L  P ++ L    +   D N  L LA    +     +L
Sbjct: 297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 3e-14
 Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 24/187 (12%)

Query: 146 NKAKQGPNNLTLLHSAIIKSQF--VVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKI 203
           +  K+G  +  +   A I      +    +L    +++ V    N    R AA  GH  +
Sbjct: 84  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143

Query: 204 ACRL-SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD-SIEFIDNKNRNILH 261
             RL       ++            LA++NG L +L  L    P  +   I  +N     
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203

Query: 262 LAA-QNGHADVVVFILKQP----------------EVEDLINSSD---VDGNTPLHLAAI 301
            AA   GH +V+ F+L  P                 V   I        + +    L+  
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263

Query: 302 NNHFNII 308
           +  F+++
Sbjct: 264 DGVFDLV 270

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.5 bits (175), Expect = 4e-14
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 4/153 (2%)

Query: 161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDC 220
            +  + +   AK L +      ++ E                  C L   D  +V     
Sbjct: 68  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD-EIVKVIQA 126

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPD-SIEFIDNKNRNILHLAAQNGHADVVVFILKQP 279
                  LA++NG L +L  L    P   +  I  +N +   LAA+NGH  V+  + +  
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186

Query: 280 EVEDLINSSDVDGNTPLHLAAINN-HFNIILVL 311
             E        +       AA+   H N+I  L
Sbjct: 187 PTEATAMIQA-ENYYAFRWAAVGRGHHNVINFL 218

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 38/290 (13%), Positives = 66/290 (22%), Gaps = 45/290 (15%)

Query: 31  ILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQI 90
           + GT         +   + H        K           KSE    VAA  G   A   
Sbjct: 54  LPGTKNMEQVRQLLCLYYAHYNRN---AKQLWSDAHKKGIKSEVICFVAAITGCSSALDT 110

Query: 91  FMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG--KMAFTMIKKDPEPIRYNNKA 148
                 +          ++    E       A     G   +   + +  P        A
Sbjct: 111 LCLLLTSDEI-------VKVIQAENYQAFRLAAEN--GHLHVLNRLCELAPTE----IMA 157

Query: 149 KQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINV-RDERNRNPLRYAAAL-GHFKIACR 206
                N      A       V+ ++ E             N    R+AA   GH  +   
Sbjct: 158 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 217

Query: 207 LSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN 266
           L                       + G+  +   +             +  +   L+  +
Sbjct: 218 L--------LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL-----KEMHDAFKLSNPD 264

Query: 267 GHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS 316
           G  D+V              S  + G   L      N   ++  +   +S
Sbjct: 265 GVFDLVT------------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 302

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 18/202 (8%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMA 171
           +  G   L    R    K     I           K    P  L LL  + ++ +F +  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGM-----RVKFN--PLPLALLLDSSLEGEFDL-V 53

Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIA-CRLSDEDDSLVYQHDCNGQSPLHLAS 230
           + +  + D  ++ ++     L  A   GH +I    +    +  V   D +G +PLH A+
Sbjct: 54  QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN--VNAADSDGWTPLHCAA 111

Query: 231 QNGQLSILENLLHSYPDSIEFIDNKNRN---ILHLAAQNGHADVVVFILKQPEVEDLINS 287
               + + + L+ S    +  +   +           + G+     F+      E  +  
Sbjct: 112 SCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV--QEK-MGI 167

Query: 288 SDVDGNTPLHLAAINNHFNIIL 309
            +      L      N   + +
Sbjct: 168 MNKGVIYALWDYEPQNDDELPM 189

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.7 bits (192), Expect = 6e-17
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           +  GQ  L    +          + ++   ++F +     +L  ++  G  D+V  I+ +
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERI-AHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
             V+D  +  + +G T LH A    H  I+  L
Sbjct: 60  --VDD-PSLPNDEGITALHNAVCAGHTEIVKFL 89

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 18/133 (13%)

Query: 185 DERNRNPLRYAAALGHFKIA-CRLS-----DEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
           +   +  L         K    R++       +            + L  +S  G+  ++
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP--------LPLALLLDSSLEGEFDLV 53

Query: 239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHL 298
           + ++    D     +++    LH A   GH ++V F+++   V   +N++D DG TPLH 
Sbjct: 54  QRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVN--VNAADSDGWTPLHC 109

Query: 299 AAINNHFNIILVL 311
           AA  N+  +   L
Sbjct: 110 AASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 16/165 (9%)

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINV-----RDERNRNPLRYAAALGHFKIACRL 207
                L      +         +   + I        +      L  ++  G F +  R+
Sbjct: 4   TGQVSLPPGKRTNL-------RKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRI 56

Query: 208 SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG 267
             E D      +  G + LH A   G   I++ L+    + +   D+     LH AA   
Sbjct: 57  IYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCN 114

Query: 268 HADVVVFILKQ-PEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           +  V  F+++    V   +  SD+             +      L
Sbjct: 115 NVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 37/277 (13%), Positives = 75/277 (27%), Gaps = 65/277 (23%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
            G  +L    R        E + H   +   P       +  ++  G F   Q  +    
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLP--LALLLDSSLEGEFDLVQRII---Y 58

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
             ++           ++EG T LHNAV                      +          
Sbjct: 59  EVDD-------PSLPNDEGITALHNAV-------------------CAGHTE-------- 84

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDE--DDSL 214
                        + K L      +N  D     PL  AA+  + ++   L +       
Sbjct: 85  -------------IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV--- 271
           +   D    +      + G     +  L+   + +  ++      L         ++   
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQ-FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK 190

Query: 272 ---VVFILKQP---EVEDLI-NSSDVDGNTPLHLAAI 301
               + I+ +    E+E      +D +G  P +L  +
Sbjct: 191 EGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.0 bits (196), Expect = 4e-18
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 14/160 (8%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDED 211
             L SA  +   +     L      +N ++   R  L     LG+ +IA RL    ++  
Sbjct: 7   NELASAAARGD-LEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGAN-- 62

Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
                  D  G + +H A++ G L  L+ LL  +   +   DN+    LHLAA+ GH  V
Sbjct: 63  ---PDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           V F++K       +   +  G+T   LA +     ++ ++
Sbjct: 119 VEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.8 bits (167), Expect = 5e-14
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ------HDCNGQSPLHLASQNGQLSIL 238
            E   N L  AAA G  +          SL+         +  G++ L +    G   I 
Sbjct: 2   AEPWGNELASAAARGDLEQL-------TSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIA 53

Query: 239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV-VFILKQPEVEDLINSSDVDGNTPLH 297
             LL    +  +  D     ++H AA+ G  D +   +  Q +    +N  D +GN PLH
Sbjct: 54  RRLLLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD----VNIEDNEGNLPLH 108

Query: 298 LAAINNHFNIILVL 311
           LAA   H  ++  L
Sbjct: 109 LAAKEGHLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 54/209 (25%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRP 94
           ++     L  AA  G    +  +L++  + V+  N    T + V    GN   A+  +  
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLL- 58

Query: 95  HG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
            G N +           +D  G   +H+A R                             
Sbjct: 59  RGANPD----------LKDRTGFAVIHDAAR-------------------AGFLD----- 84

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
                             + L   +  +N+ D     PL  AA  GH ++   L     S
Sbjct: 85  ----------------TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLL 242
            V   +  G +   LA   G+  ++  + 
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 15/59 (25%)

Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLI------NSSDVDGNTPLHLAAINNH 304
           +     N L  AA  G  +          +  L+      N+ +  G T L +  + N 
Sbjct: 1   MAEPWGNELASAAARGDLEQ---------LTSLLQNNVNVNAQNGFGRTALQVMKLGNP 50

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 78.3 bits (194), Expect = 4e-18
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
           I++    +   L  AAA G  +   +L +         +  G+ P+ +    G   + E 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAE- 61

Query: 241 LLHSYPDSIEFIDNKNRNI-LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA 299
           LL  +       D       +H AA+ G  D +V + +       ++  D  G  P+ LA
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GAR--LDVCDAWGRLPVDLA 118

Query: 300 AINNHFNIILVL 311
               H +I   L
Sbjct: 119 EEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.1 bits (139), Expect = 2e-10
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDE-- 210
           ++   L +A  + Q V   + L       N  +   R P+     +G  ++A  L     
Sbjct: 11  SSDAGLATAAARGQ-VETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGA 68

Query: 211 DDSLVYQHDCNGQ-SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
           +       D      P+H A++ G L  L  +LH     ++  D   R  + LA + GH 
Sbjct: 69  E---PNCADPATLTRPVHDAAREGFLDTLV-VLHRAGARLDVCDAWGRLPVDLAEEQGHR 124

Query: 270 DVVVFILKQ 278
           D+  ++   
Sbjct: 125 DIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 10/134 (7%)

Query: 110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVV 169
                 +  L  A  +   +    +++   +P   N   + G      +   ++ S  V 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADP---NALNRFG---RRPIQVMMMGSAQVA 60

Query: 170 MAKILEAKRDLINVRDERNR-NPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHL 228
             ++L       N  D      P+  AA  G       L       +   D  G+ P+ L
Sbjct: 61  --ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDL 117

Query: 229 ASQNGQLSILENLL 242
           A + G   I   L 
Sbjct: 118 AEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 28/114 (24%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           + D  L  AA  G    V ++L+  +D  +  N     P+ V    G+   A++ +  HG
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLL-HG 67

Query: 97  -----NGNNTGT----------FDDILR----------KRDEEGNTPLHNAVRK 125
                    T T          F D L             D  G  P+  A  +
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 22/202 (10%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMA 171
           D+ G         K   +    +          N +        T L  A +        
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR---------NYRDSYN---RTPLMVACMLGMENA-I 51

Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIA-CRLSDEDDSLVYQHDCNGQSPLHLAS 230
             L    D +  +D      L +A       IA   LS   +  V   D +G++PL  + 
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN--VNTKDFSGKTPLMWSI 109

Query: 231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV-VFILKQPEVEDLINSSD 289
             G   +   LL  +  ++   + +    L +A++ G +++V   +    +    I++ D
Sbjct: 110 IFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARD 164

Query: 290 VDGNTPLHLAAINNHFNIILVL 311
           + G T    A I     +I + 
Sbjct: 165 LTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.0 bits (178), Expect = 2e-15
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 13/131 (9%)

Query: 182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL 241
           +  D+      +        +         D L    D   ++PL +A   G  + ++ L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNL-------DFLRNYRDSYNRTPLMVACMLGMENAIDKL 54

Query: 242 LHSYPDSIEFIDNKNRNILHLAAQNGHADVV-VFILKQPEVEDLINSSDVDGNTPLHLAA 300
           +    D +E  D +    L  A +N    +    + K       +N+ D  G TPL  + 
Sbjct: 55  V-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN----VNTKDFSGKTPLMWSI 109

Query: 301 INNHFNIILVL 311
           I  +  +   L
Sbjct: 110 IFGYSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 73/243 (30%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSE---TPMHVAARAGNFGAAQIFMR 93
           NG+    I         + + L+         N++     TP+ VA   G   A    + 
Sbjct: 7   NGEIVEKIKDEKSINQNL-DFLR---------NYRDSYNRTPLMVACMLGMENAIDKLV- 55

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
              N +        L  +D EG+T L  AV                   + N        
Sbjct: 56  --ENFDK-------LEDKDIEGSTALIWAV-------------------KNNRLG----- 82

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SD 209
                           +A+ L +K   +N +D   + PL ++   G+ +++  L    ++
Sbjct: 83  ----------------IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126

Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
                V   +  G++PL +AS+ G+  I++  L      I   D         A   G  
Sbjct: 127 -----VNDRNLEGETPLIVASKYGRSEIVK-KLLELGADISARDLTGLTAEASARIFGRQ 180

Query: 270 DVV 272
           +V+
Sbjct: 181 EVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 68/214 (31%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
              T L +A   G E  + +++++    +   + +  T +  A +    G A+  +   G
Sbjct: 34  YNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLS-KG 91

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            N N           +D  G TPL  ++                    +           
Sbjct: 92  SNVN----------TKDFSGKTPLMWSI-------------------IFGYSE------- 115

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
                         M+  L      +N R+     PL  A+  G  +I           +
Sbjct: 116 --------------MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV--------KKL 153

Query: 216 YQH-------DCNGQSPLHLASQNGQLSILENLL 242
            +        D  G +    A   G+  +++   
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.8 bits (193), Expect = 6e-18
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 184 RDERNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
            + R    L  A+  G       L    SD         D  G +PLH A  +G L ++E
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-----PNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 240 NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA 299
            LL  +   +     +N + LH AA+NGH D+V  +L         N+ ++ G  P+   
Sbjct: 61  LLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYT 116

Query: 300 AINNHFNIILVLARN 314
              +  +++L+  +N
Sbjct: 117 DDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 4e-08
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           T+  G+T LHIA+  G    V  +L++ SD  +V +H   TP+H A   G+    ++ ++
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 94  PHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            H    N              + ++PLH+A + 
Sbjct: 65  -HKALVN----------TTGYQNDSPLHDAAKN 86

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 7e-07
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
            G T LH A   GH  +V  +L+H++  V+   +++++P+H AA+ G+    ++ +  +G
Sbjct: 42  AGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLS-YG 99

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            + N            +  G  P+     +
Sbjct: 100 ASRN----------AVNIFGLRPVDYTDDE 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           T    D+ LH AA+ GH  +V  +L + +   +  N     P+             +  +
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

Query: 94  PHGNGNNT 101
            + + + +
Sbjct: 131 -NESSSAS 137

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 8e-18
 Identities = 34/278 (12%), Positives = 81/278 (29%), Gaps = 40/278 (14%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
             +  L        + +   +    S+  S     S       +                
Sbjct: 62  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNS-EGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                    ++    DE GNTPLH      + ++   ++K     +  +N         +
Sbjct: 121 --------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN------MGES 166

Query: 157 LLHSAIIKS---QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
            L  A+             +L+     + + D  NR  L +                  +
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT------GCSAA 220

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
             Y  D                 ++  ++      I+   N+  +  +         ++ 
Sbjct: 221 AKYYLDI----------------LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 264

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +  +  + +++N+ D +G+T L++AA   + +I+  L
Sbjct: 265 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 35/236 (14%), Positives = 74/236 (31%), Gaps = 43/236 (18%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF---M 92
           ++G+T LH      +  LV  ++KH S+     ++  E+ +  A ++ N   +  F   +
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187

Query: 93  RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGP 152
                              D    T LH+ +         + +       +Y        
Sbjct: 188 DYLYPCLIL---------EDSMNRTILHHIIIT-------SGMTGCSAAAKYYLD----- 226

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLS--DE 210
                          ++M  I++ +   I        +            I   L     
Sbjct: 227 ---------------ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271

Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN 266
             +++   D NG + L++A++ G +SI++ LL    D     +      +   A  
Sbjct: 272 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 31/226 (13%), Positives = 69/226 (30%), Gaps = 13/226 (5%)

Query: 93  RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGP 152
            P G+  N GT D+      +    P+             + +K             +  
Sbjct: 7   GPSGDNENNGTDDN------DRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQK 60

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFK-IACRLSDED 211
             L      ++  +   M   L       N     +    ++ +     + +     +  
Sbjct: 61  MKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120

Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA-- 269
            +L    D +G +PLH  +    L ++++L+  +  +  + DN   + L  A ++ +   
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYD 179

Query: 270 -DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
                 +L    +   +   D    T LH   I +        A+ 
Sbjct: 180 SGTFEALLD--YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 223

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 76.0 bits (188), Expect = 4e-17
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 21/157 (13%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDED 211
             L +A  + +   +  +LEA  +  N  +   R P+     +G  ++A  L    ++  
Sbjct: 14  DWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPI-QVMMMGSARVAELLLLHGAE-- 69

Query: 212 DSLVYQHDCNGQ-SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD 270
                  D      P+H A++ G L  L  +LH     ++  D   R  + LA + GH D
Sbjct: 70  ---PNCADPATLTRPVHDAAREGFLDTLV-VLHRAGARLDVRDAWGRLPVDLAEELGHRD 125

Query: 271 VVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNI 307
           V  ++           +    G+    + A     +I
Sbjct: 126 VARYLRA--------AAGGTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.5 bits (179), Expect = 9e-16
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 11/134 (8%)

Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDE--DDSLVYQHDCNGQSPLHLASQNGQLSIL 238
                E + + L  AAA G  +    L +   +       +  G+ P+ +    G   + 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMMM-GSARVA 60

Query: 239 ENLLHSYPDSIEFIDNKNRNI-LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH 297
           E LL  +       D       +H AA+ G  D +V + +       ++  D  G  P+ 
Sbjct: 61  ELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GAR--LDVRDAWGRLPVD 116

Query: 298 LAAINNHFNIILVL 311
           LA    H ++   L
Sbjct: 117 LAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 9e-11
 Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 22/165 (13%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMA 171
            E     L  A  +   +    +++    P   N     G      +   ++ S  V   
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANP---NAPNSYG---RRPIQVMMMGSARVA-- 60

Query: 172 KILEAKRDLINVRDERNR-NPLRYAAALGHFKIACRLSDE--DDSLVYQHDCNGQSPLHL 228
           ++L       N  D      P+  AA  G       L         +   D  G+ P+ L
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDL 117

Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKN-RNILHLAAQNGHADVV 272
           A + G   +   L                 N   + A  G +D+ 
Sbjct: 118 AEELGHRDVARYL-------RAAAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 61/205 (29%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
                L  AA  G    V  +L+  ++  + PN     P+ V    G+   A++ +  HG
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLLL-HG 67

Query: 97  -NGNNTGTFDDILRKRDEEGNT-PLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNN 154
              N            D    T P+H+A                         A++G   
Sbjct: 68  AEPN----------CADPATLTRPVHDA-------------------------AREG--- 89

Query: 155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL 214
                             +L      ++VRD   R P+  A  LGH  +A  L       
Sbjct: 90  ----FLDT--------LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL------R 131

Query: 215 VYQHDCNGQSPLHLASQNGQLSILE 239
                  G +   + +  G   I +
Sbjct: 132 AAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 14/119 (11%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A   G  ++VR      G      +  G   + +    G   +   +L H ++    
Sbjct: 16  LATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
                  P+H AAR G      +  R  G   +           RD  G  P+  A   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHR-AGARLD----------VRDAWGRLPVDLAEEL 121

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.9 bits (183), Expect = 5e-17
 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%)

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
           NG++PLHLA++NG L +++ LL +  D +   D   R  LHLAA+NGH +VV  +L+   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57

Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +N+ D +G TPLHLAA N H  ++ +L
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 189 RNPLRYAAALGHFKIA-CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD 247
           R PL  AA  GH ++    L    D  V   D NG++PLHLA++NG L +++ LL     
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGA 59

Query: 248 SIEFIDNKNRNILHLAAQNGHADVV 272
            +   D   R  LHLAA+NGH +VV
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.7 bits (115), Expect = 1e-07
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           NG T LH+AAR GH  +V  +L+  +D V+  +    TP+H+AAR G+    ++ +   G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AG 58

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            + N           +D+ G TPLH A R 
Sbjct: 59  ADVN----------AKDKNGRTPLHLAARN 78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 7e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 181 INVRDERNRNPLRYAAALGHFKIACRL-SDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
           +N +D+  R PL  AA  GH ++   L     D  V   D NG++PLHLA++NG L +++
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVK 85

Query: 240 NLL 242
            LL
Sbjct: 86  LLL 88

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.9 bits (188), Expect = 5e-17
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
           +      L  AA  G  +   +L           +    +PLH A+   ++S++E LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63

Query: 245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH 304
           +   +   D      LH A   GH +V   ++K       +N +D+   TPLH AA    
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAV--VNVADLWKFTPLHEAAAKGK 120

Query: 305 FNIILVL 311
           + I  +L
Sbjct: 121 YEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDED 211
             L  A        + K+   +       + R   PL +AA      +   L    +D  
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-- 67

Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
              V+  D  G  PLH A   G   + E L+  +   +   D      LH AA  G  ++
Sbjct: 68  ---VHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEI 123

Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
              +L+           + DGNTPL L   +   +I  +L
Sbjct: 124 CKLLLQH---GADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +++    L  AA+ G  + V  +     V       +   +TPLH AA  N  +++  L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVN--CRDIEGRQSTPLHFAAGYNRVSVVEYL 61

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.2 bits (129), Expect = 7e-09
 Identities = 45/214 (21%), Positives = 71/214 (33%), Gaps = 68/214 (31%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
             D  L  AA+ G    V ++   QS        +  TP+H AA        +  ++ HG
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HG 65

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            + +           +D+ G  PLHNA                     Y +         
Sbjct: 66  ADVH----------AKDKGGLVPLHNAC-------------------SYGHYE------- 89

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
                         +A++L     ++NV D     PL  AAA G ++I          L+
Sbjct: 90  --------------VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC--------KLL 127

Query: 216 YQH-------DCNGQSPLHLASQNGQLSILENLL 242
            QH       + +G +PL L   +G   I + L 
Sbjct: 128 LQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR 160

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 74.7 bits (185), Expect = 7e-17
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 7/122 (5%)

Query: 191 PLRYAAALGHFKIA-CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSI 249
           PL  AA  GH ++    L    D  V   D NG++PLHLA++NG L +++ LL      +
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61

Query: 250 EFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL 309
              D   R  LHLAA+NGH +VV  +L+    +  +N+ D +G TPLHLAA N H  ++ 
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD--VNAKDKNGRTPLHLAARNGHLEVVK 118

Query: 310 VL 311
           +L
Sbjct: 119 LL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 74.3 bits (184), Expect = 8e-17
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
           NG++PLHLA++NG L +++ LL      +   D   R  LHLAA+NGH +VV  +L+   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57

Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +N+ D +G TPLHLAA N H  ++ +L
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 7e-07
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           NG T LH+AAR GH  +V  +L+  +D V+  +    TP+H+AAR G+    ++ +   G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AG 58

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            + N           +D+ G TPLH A R 
Sbjct: 59  ADVN----------AKDKNGRTPLHLAARN 78

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.6 bits (107), Expect = 4e-06
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           NG T LH+AAR GH  +V  +L+  +D V+  +    TP+H+AAR G+    ++ +   G
Sbjct: 34  NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AG 91

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            + N           +D+ G TPLH A R 
Sbjct: 92  ADVN----------AKDKNGRTPLHLAARN 111

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.5 bits (191), Expect = 9e-17
 Identities = 34/268 (12%), Positives = 59/268 (22%), Gaps = 61/268 (22%)

Query: 74  TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
             +      G        +      +   T  D        G T L  A           
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLT--DSAYTEGSTGKTCLMKA--------VLN 53

Query: 134 MIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR 193
           +       I    +  +   N   L +A                         +  + L 
Sbjct: 54  LQDGVNACIMPLLQIDKDSGNPKPLVNAQC------------------TDEFYQGHSALH 95

Query: 194 YAAALGHFKIACRL------------SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL 241
            A      +    L                          G+ PL LA+   Q  ++  L
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

Query: 242 LHSYPD------------------SIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED 283
           L +                      +   ++   + L +   +G   +   +        
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV---Q 212

Query: 284 LINSSDVDGNTPLHLAAINNHFNIILVL 311
           L   S+  G TPL LAA      I   +
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 40/261 (15%), Positives = 85/261 (32%), Gaps = 47/261 (18%)

Query: 7   KLFRALRHGYTDKVR---EFARLNGNRILGT----SQNGDTALHIAA---RFGHEILVME 56
           +LF  +  G  +++    E+ R N   +  +       G T L  A    + G    +M 
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 57  ILKHQSDLVSVP----------NHKSETPMHVAARAGNFGAAQIFMRPHG----NGNNTG 102
           +L+   D  +             ++  + +H+A    +    ++ +  +G          
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLRACGR 123

Query: 103 TFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAI 162
            F          G  PL  A       +   +++   +P         G    T+LH+ +
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLG---NTVLHALV 180

Query: 163 IKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNG 222
           + +                   +    + L      G  ++  RL      L    +  G
Sbjct: 181 MIAD------------------NSPENSALVIHMYDGLLQMGARL-CPTVQLEEISNHQG 221

Query: 223 QSPLHLASQNGQLSILENLLH 243
            +PL LA++ G++ I  ++L 
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 38/278 (13%), Positives = 75/278 (26%), Gaps = 49/278 (17%)

Query: 40  TALHIAARFGH----EILVMEILKHQSDLVSVPNHKS---ETPMHVAARAGNFGAAQIFM 92
             L      G       L+  +  +   L      +    +T +  A      G     M
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 93  ----RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIK-------KDPEP 141
                   +GN     +        +G++ LH A+ K   +    +++       +    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 142 IRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDL--INVRDERNRNPLRYAAALG 199
               ++          L  A    Q+ V+  +LE       +   D      L       
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV--- 180

Query: 200 HFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI 259
                          +   +    S L +   +G L +   L        E  +++    
Sbjct: 181 ---------------MIADNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQGLTP 224

Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH 297
           L LAA+ G  ++   IL++          +  G    H
Sbjct: 225 LKLAAKEGKIEIFRHILQR----------EFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 32/183 (17%)

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKR-------DLINVRDERNRNPLRYAAAL---GHFKI 203
           +   L S + +     +  +LE  R       D         +  L  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 204 ACRLSDEDDSLVYQH----------DCNGQSPLHLASQNGQLSILENLL----------- 242
              L   D                    G S LH+A +   L  ++ L+           
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 243 -HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
              +              L LAA     DVV ++L+ P     + ++D  GNT LH   +
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 302 NNH 304
              
Sbjct: 182 IAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 30/157 (19%)

Query: 188 NRNPLRYAAALGHFKI-------ACRLSDEDDSLVYQHDCNGQSPLHLA---SQNGQLSI 237
           +R+ L    + G  +            S       Y     G++ L  A    Q+G  + 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 238 LENLLHSYPDSIEFIDNKNRNI----------LHLAAQNGHADVVVFILKQ--------- 278
           +  LL    DS       N             LH+A +      V  +++          
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 279 -PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
               +    +    G  PL LAA    ++++  L  N
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 31  ILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQI 90
           ++  +   ++AL I    G   +   +         + NH+  TP+ +AA+ G     + 
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 91  FMRPHGNGNNTGTFDD 106
            ++   +G        
Sbjct: 240 ILQREFSGAAAHHHHH 255

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
           +G +PLH A++NG    ++ LL    D +          LHLAA+NGHA++V  +L +  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-- 64

Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +N+   DGNTP HLA  N H  I+ +L
Sbjct: 65  -GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.5 bits (143), Expect = 3e-11
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 181 INVRDERNRNPLRYAAALGHFKIACRL-SDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
                +    PL  AA  GH +   +L S   D  V     +G +PLHLA++NG   I++
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 240 NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH 297
            LL +    +           HLA +NGH ++V  +  +   +  +N+     +   H
Sbjct: 60  LLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GAD--VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.4 bits (127), Expect = 6e-09
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                  LH AA+NGHA+ V  +L +      +N+   DGNTPLHLAA N H  I+ +L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSK---GADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.8 bits (110), Expect = 9e-07
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRP 94
           S++G+T LH AA+ GH   V ++L   +D V+  +    TP+H+AA+ G+    ++ +  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLA- 63

Query: 95  HG-NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            G + N           R ++GNTP H A + 
Sbjct: 64  KGADVN----------ARSKDGNTPEHLAKKN 85

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 13/85 (15%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +G+T LH+AA+ GH  +V  +L   +D V+  +    TP H+A + G+    ++     G
Sbjct: 41  DGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDA-KG 98

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLH 120
            + N           R    +   H
Sbjct: 99  ADVN----------ARSWGSSHHHH 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
                   A +NG L  +++ +    D +       R  LH AA  G  +++ F+L +  
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK-- 62

Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               IN+ D    TPL  A    H + + +L
Sbjct: 63  -GADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.5 bits (174), Expect = 2e-15
 Identities = 28/121 (23%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 189 RNPLRYAAALGHFKIA-CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD 247
                +A   G        ++  +D  V +    G+ PLH A+  GQL ILE LL     
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLL-LKGA 64

Query: 248 SIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNI 307
            I   D  +   L  A   GH   V  +L              DG T            +
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLL---SKGADKTVKGPDGLTAFEATDNQAIKAL 121

Query: 308 I 308
           +
Sbjct: 122 L 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 15/66 (22%)

Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLI------NSSDVDGNTPLHLAAINNHF 305
           + +        A +NG  D V         +D +      N +   G  PLH AA     
Sbjct: 3   LGSMCDKEFMWALKNGDLDEV---------KDYVAKGEDVNRTLEGGRKPLHYAADCGQL 53

Query: 306 NIILVL 311
            I+  L
Sbjct: 54  EILEFL 59

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.6 bits (112), Expect = 7e-07
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
             D     A + G    V + +    D V+        P+H AA  G     +  +   G
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLL-KG 63

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            + N            D+   TPL +AV +
Sbjct: 64  ADIN----------APDKHHITPLLSAVYE 83

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
              AL++G  D+V+++    G  +  T + G   LH AA  G   ++  +L   +D ++ 
Sbjct: 11  FMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INA 68

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
           P+    TP+  A   G+    ++ +   G +             +  +G T       +
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLS-KGADKT----------VKGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 10/126 (7%)

Query: 115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKIL 174
            +     A++  D       + K  +    N   + G      LH A    Q  +  + L
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGG---RKPLHYAADCGQLEI-LEFL 59

Query: 175 EAKRDLINVRDERNRNPLRYAAALGHFKIA-CRLSDEDDSLVYQHDCNGQSPLHLASQNG 233
             K   IN  D+ +  PL  A   GH       LS   D        +G +         
Sbjct: 60  LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD--KTVKGPDGLTAFEATDNQA 117

Query: 234 QLSILE 239
             ++L+
Sbjct: 118 IKALLQ 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 73.2 bits (181), Expect = 5e-16
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G SPLHLA+Q G  S  E LL     S +     +R  LH+AA  GHA++V  +LK 
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89

Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
              +  +N+ D+   T LH A  +NH  ++ +L
Sbjct: 90  -GAD--VNAKDMLKMTALHWATEHNHQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
             L  A    Q     +IL A        D    +PL  AA  GHF     L     S  
Sbjct: 4   KKLLEAARAGQDDE-VRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-R 60

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
                  ++PLH+A+  G  +I+E +L  +   +   D      LH A ++ H +VV  +
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVE-VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 276 LKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           +K       +++      T   ++  N + ++  +L
Sbjct: 120 IKY---GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.7 bits (159), Expect = 5e-13
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV-VFILKQP 279
           +    L  A++ GQ   +  L+ +        D    + LHLAAQ GH     V +    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILM-ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 280 EVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                 ++      TPLH+AA   H NI+ VL
Sbjct: 59  S----RDARTKVDRTPLHMAASEGHANIVEVL 86

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 56.2 bits (137), Expect = 4e-10
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 57/207 (27%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +    L  AAR G +  V  ++ + +   +  +    +P+H+AA+ G+F   ++ +R  G
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLR-AG 57

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            + +           R +   TPLH A                       +         
Sbjct: 58  VSRD----------ARTKVDRTPLHMAA-------------------SEGHAN------- 81

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED-DSL 214
                         + ++L      +N +D      L +A    H ++   L     D  
Sbjct: 82  --------------IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-- 125

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENL 241
           V+      ++   ++  NG   + E L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 19/134 (14%)

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
                 P   AA     +   +L ++ D  V   D NG++ L   +  G    +  L  +
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEA 98

Query: 245 YPDSIEFIDNKNRNI-LHLAAQNGHADVVVFILKQPEVEDLI------NSSDVDGNTPLH 297
             D ++  D +     LH+AA     +VV         E L+         D  G T L 
Sbjct: 99  GAD-LDHRDMRGGLTALHMAAGYVRPEVV---------EALVELGADIEVEDERGLTALE 148

Query: 298 LAAINNHFNIILVL 311
           LA            
Sbjct: 149 LAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
            G     +  ++G         +   D    + ++       AA+      +  +L+  +
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLEDRD 68

Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +++ D +G T L   A       + +L
Sbjct: 69  ----VDAVDENGRTALLFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.8 bits (159), Expect = 9e-13
 Identities = 39/261 (14%), Positives = 69/261 (26%), Gaps = 84/261 (32%)

Query: 22  EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR 81
           E  ++ G+R   T+  G     I  + GH    +      +D+      + ETP   AAR
Sbjct: 1   EVNKIIGSR---TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAAR 53

Query: 82  AGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPE 140
             +  A    +     + +            DE G T L                     
Sbjct: 54  KADEQALSQLL--EDRDVD----------AVDENGRTALLFVA----------------- 84

Query: 141 PIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN-RNPLRYAAALG 199
                +                         ++L      ++ RD R     L  AA   
Sbjct: 85  --GLGSDK---------------------CVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 200 HFKIACRLSDE--DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR 257
             ++   L +   D   +   D  G + L LA +  + +   N                 
Sbjct: 122 RPEVVEALVELGAD---IEVEDERGLTALELAREILKTTPKGNP---------------- 162

Query: 258 NILHLAAQNGHADVVVFILKQ 278
             +    + G   V+  +  Q
Sbjct: 163 --MQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 38/251 (15%), Positives = 65/251 (25%), Gaps = 75/251 (29%)

Query: 61  QSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLH 120
              + S    +      +  + G+  +            +             E  TP  
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS---SYIAADV----------VSEYETPWW 49

Query: 121 NAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDL 180
            A RK D            + +              LL                    D 
Sbjct: 50  TAARKAD-----------EQALSQ------------LLEDR-----------------D- 68

Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
           ++  DE  R  L + A LG  K    L++    L ++    G + LH+A+   +  ++E 
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
           L+      IE  D +    L LA +                             P+    
Sbjct: 129 LV-ELGADIEVEDERGLTALELAREILKTTPK--------------------GNPMQFGR 167

Query: 301 INNHFNIILVL 311
                 +I VL
Sbjct: 168 RIGLEKVINVL 178

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 9e-07
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 15/118 (12%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
                + G++      +      +       +T    AAR   E   +  L    D V  
Sbjct: 18  YLIEWKDGHSPSW-VPSSYIAADV---VSEYETPWWTAARKADEQ-ALSQLLEDRD-VDA 71

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            +    T +   A  G+    ++     G         D+  +    G T LH A   
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAE-AGA--------DLDHRDMRGGLTALHMAAGY 120

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 22/175 (12%)

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN--RNPLRYAAALGHFKIACRLSDE 210
           +    + +A +   +    ++ E   +      + N   + LR       +KI+  L ++
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 211 --DDSLVYQHDCNGQSPLHLASQNGQLSILEN------LLHSYPDSIEFIDNKNRNILHL 262
             D   +      G +      Q G   I          L    D I  +    + ++  
Sbjct: 65  GAD---IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFK 120

Query: 263 AAQNGHAD------VVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
              N   D      +   I  Q  ++  +   D  G T L           + ++
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQ--LLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 20/217 (9%), Positives = 49/217 (22%), Gaps = 54/217 (24%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSE---TPMHVAARAGNFGAAQIF 91
           + +    +  AA  G     +E+ +   +       KS      +        +  +   
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 92  MRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG 151
           +     G +       ++ R +EG T      +                           
Sbjct: 62  IN---KGAD-------IKSRTKEGTTLFFPLFQGG------------------------- 86

Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED 211
                   + I  +    + KI   K   I    +  +  +              +    
Sbjct: 87  -------GNDITGT--TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137

Query: 212 DSL------VYQHDCNGQSPLHLASQNGQLSILENLL 242
                    +   D  G + L    +  +   L+ + 
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 16/179 (8%), Positives = 37/179 (20%), Gaps = 21/179 (11%)

Query: 114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQF---VVM 170
                +  A      +    + +K  E      K+        +L+  +  +       +
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKS-------NILYDVLRNNNDEARYKI 57

Query: 171 AKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL-----VYQHDCNGQSP 225
           +  L  K   I  R +            G   I          L     +       +  
Sbjct: 58  SMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117

Query: 226 LHLASQNGQLSILEN------LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           +     N  +   E       +       +   D      L    +      +  +   
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 13/139 (9%)

Query: 8   LFRALRHGYTDKVREFARL---NGNRILGTSQNGDTALHIAARFGHEILVMEI------L 58
           L+  LR+   +   + +      G  I   ++ G T      + G   +          L
Sbjct: 42  LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101

Query: 59  KHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP 118
           +  +D ++      +  +            ++        + +G    +L K D+ G T 
Sbjct: 102 EKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL--QLLIK-DKWGLTA 157

Query: 119 LHNAVRKCDGKMAFTMIKK 137
           L    R         M   
Sbjct: 158 LEFVKRCQKPIALKMMEDY 176

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 23/228 (10%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           N    L  AA  G   +V + +K  +D  S PN +  T +H A    N+      +   G
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLIT-AG 77

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
            N N            D  G TPLH A    D  +   +++           A    +  
Sbjct: 78  ANVN----------SPDSHGWTPLHCAASCNDTVICMALVQHGA-----AIFATTLSDGA 122

Query: 156 TLLHSA-IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL 214
           T        +  +   A  L      + + +      L   +A    +++ R  +     
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVT-- 180

Query: 215 VYQHDCNGQSPLHLASQNGQLSILE-NLLHSYPDSIEFIDNKNRNILH 261
           V + D   ++    A+ +GQ   +  N    +P  ++   +K ++  H
Sbjct: 181 VLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP-RVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 30/202 (14%), Positives = 68/202 (33%), Gaps = 14/202 (6%)

Query: 109 RKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFV 168
           R+        L +A    + ++    +K+  +P   +   ++G   +T LH+AI  + + 
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEG---ITALHNAICGANYS 68

Query: 169 VMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHL 228
           ++  ++ A  + +N  D     PL  AA+     I   L     ++      +G +    
Sbjct: 69  IVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127

Query: 229 AS--QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLIN 286
               + G        L     S+  +++     L   +        +   +   V   + 
Sbjct: 128 CDPYREGYADCAT-YLADVEQSMGLMNSGAVYALWDYSAEFGD--ELSFREGESVT--VL 182

Query: 287 SSDVDGNTPLHLAAINNHFNII 308
             D    T    AA++     +
Sbjct: 183 RRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.1 bits (162), Expect = 7e-13
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 217 QHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL 276
           +   N    L  A+  G+L +++  +    +     + +    LH A    +  +V F++
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAV-KEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74

Query: 277 KQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                   +NS D  G TPLH AA  N   I + L
Sbjct: 75  TA-GAN--VNSPDSHGWTPLHCAASCNDTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 11/138 (7%)

Query: 181 INVRDERNRNP---LRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSI 237
                    NP   L  AA  G  ++  +   E +    Q +  G + LH A      SI
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSI 69

Query: 238 LENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDV-DGNTPL 296
           ++ L+ +  + +   D+     LH AA      + + +++       I ++ + DG T  
Sbjct: 70  VDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQH---GAAIFATTLSDGATAF 125

Query: 297 HLAAI--NNHFNIILVLA 312
                    + +    LA
Sbjct: 126 EKCDPYREGYADCATYLA 143

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 17/167 (10%)

Query: 145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
               +   N L LL  A +  +  V  +    + +  +  +E     L  A    ++ I 
Sbjct: 12  RKARRARLNPLVLLLDAALTGELEV-VQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70

Query: 205 CRL----SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI- 259
             L    ++     V   D +G +PLH A+      I    L  +  +I      +    
Sbjct: 71  DFLITAGAN-----VNSPDSHGWTPLHCAASCNDTVICM-ALVQHGAAIFATTLSDGATA 124

Query: 260 LHLAA--QNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH 304
                  + G+AD   ++    +    +   +      L   +    
Sbjct: 125 FEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFG 168

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.0 bits (165), Expect = 5e-14
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 217 QHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV-VFI 275
            H  +    L  A++ GQ   +  L+ +    +   D      L+LA  +GH ++V V +
Sbjct: 9   HHGSDLGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67

Query: 276 LKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               +    +N+ D  G TPLHLAA   H  I  VL
Sbjct: 68  KNGAD----VNAVDAIGFTPLHLAAFIGHLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.9 bits (162), Expect = 1e-13
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PL+LA+ +G L I+E +L      +  +D      LHLAA  GH ++   +LK 
Sbjct: 44  DEYGLTPLYLATAHGHLEIVE-VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102

Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                 +N+ D  G T   ++  N + ++  +L
Sbjct: 103 ---GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +    L  AAR G +  V  ++ + +D V+  +    TP+++A   G+    ++ ++ +G
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLK-NG 70

Query: 97  -NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            + N            D  G TPLH A   
Sbjct: 71  ADVN----------AVDAIGFTPLHLAAFI 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 14/120 (11%)

Query: 7   KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
           KL  A R G  D+V      NG  +    + G T L++A   GH  +V  +LK+ +D V+
Sbjct: 17  KLLEAARAGQDDEV-RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VN 74

Query: 67  VPNHKSETPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
             +    TP+H+AA  G+   A++ ++ HG + N           +D+ G T    ++  
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVN----------AQDKFGKTAFDISIGN 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 55/171 (32%)

Query: 74  TPMHVAARAGNFGAAQIFMRPHG-NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAF 132
             +  AARAG     +I M  +G + N           +DE G TPL+ A          
Sbjct: 16  KKLLEAARAGQDDEVRILMA-NGADVN----------AKDEYGLTPLYLATA-------- 56

Query: 133 TMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL 192
                      + +                       + ++L      +N  D     PL
Sbjct: 57  -----------HGHLE---------------------IVEVLLKNGADVNAVDAIGFTPL 84

Query: 193 RYAAALGHFKIACRL-SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
             AA +GH +IA  L     D  V   D  G++   ++  NG   + E L 
Sbjct: 85  HLAAFIGHLEIAEVLLKHGAD--VNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.7 bits (163), Expect = 6e-13
 Identities = 32/234 (13%), Positives = 55/234 (23%), Gaps = 54/234 (23%)

Query: 106 DILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS 165
           D   +    G T L  A+                           G N+   +   I + 
Sbjct: 37  DEEFREPSTGKTCLPKALLNL----------------------SAGRNDTIPILLDIAEK 74

Query: 166 QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA-------------CRLSDEDD 212
              +   I             R +  L  A                       R      
Sbjct: 75  TGNMREFINSP----FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLL-HSYPD-SIEFIDNKNRNILHLAAQNGHAD 270
                +   G+ PL LA+   Q  I+  L  + +    +   D++   +LH         
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 271 VVVFILKQPEVEDLI-------------NSSDVDGNTPLHLAAINNHFNIILVL 311
                      + L+                + DG +PL +AA      I   +
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 40/279 (14%), Positives = 82/279 (29%), Gaps = 53/279 (18%)

Query: 8   LFRALRHGYTDKVREFARL---NGNRI----LGTSQNGDTALHIAA---RFGHEILVMEI 57
           LF  +  G  D +         +  R+          G T L  A      G    +  +
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 58  LKHQSDLVSVP----------NHKSETPMHVAARAGNFGAAQIFMRPHG-----NGNNTG 102
           L       ++            ++ +T +H+A         ++ +   G           
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQARGRF 127

Query: 103 TFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAI 162
                       G  PL  A       +   + +   +      +  +G    T+LH+ +
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG---NTVLHALV 184

Query: 163 IKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNG 222
             +         E  + +  + D      L   A L            D +L    + +G
Sbjct: 185 AIAD-----NTRENTKFVTKMYD----LLLIKCAKL----------FPDTNLEALLNNDG 225

Query: 223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH 261
            SPL +A++ G++ I ++++       E  D    +  H
Sbjct: 226 LSPLMMAAKTGKIGIFQHII-----RREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 46/288 (15%), Positives = 81/288 (28%), Gaps = 60/288 (20%)

Query: 37  NGDTALHIAAR---FGHEILVMEILKHQSDLVSVPNHKS---ETPMHVAA---RAGNFGA 87
           N      I +R    G E L+  +L H+  L      +    +T +  A     AG    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 88  AQIFMRPHGNGNNTGTF-DDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNN 146
             I +       N   F +   R     G T LH A+ +                     
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV--------------- 109

Query: 147 KAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACR 206
                   L +   A + +Q    A+    +             PL  AA      I   
Sbjct: 110 -------ELLVEKGADVHAQ----ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158

Query: 207 LSDEDDSL--VYQHDCNGQSPLHLASQNG---------QLSILENLL------HSYPDSI 249
           L++       + + D  G + LH                  + + LL          +  
Sbjct: 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218

Query: 250 EFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH 297
             ++N   + L +AA+ G   +   I+++         +D   +   H
Sbjct: 219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRR-------EIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 18/108 (16%)

Query: 222 GQSPLHLASQNGQLSILENL---LHSYPDSIEFIDNKNRN----ILHLAAQN---GHADV 271
            +  L      G    LE L   L ++   +   + +  +     L  A  N   G  D 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 272 VVFIL--------KQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           +  +L         +  +          G T LH+A      + + +L
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELL 112

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
            S +        L+         + +     L  AA+ G  D V  ++        + + 
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMAN---GADVAAK 53

Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
           D +G+TPLHLAA N H  ++ +L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLL 76

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
           +    L  A++ GQ   +  L+ +    +   D      LHLAA+NGH +VV  +L+   
Sbjct: 23  DLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-- 79

Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
               + + D  G T   ++  N + ++  +L
Sbjct: 80  -GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 185 DERNRNPLRYAAALGHFKIACRLSDE--DDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
                  L  AA  G       L     D   V   D NG +PLHLA++NG L +++ LL
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLL 77

Query: 243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
            +  D +   D   +    ++  NG+ D+   +
Sbjct: 78  EAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +    L  AAR G +  V  ++ + +D V+  +    TP+H+AAR G+    ++ +    
Sbjct: 23  DLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLL---E 78

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            G +       +  +D+ G T    ++  
Sbjct: 79  AGAD-------VXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
           +NG T LH+AAR GH  +V  +L+  +D V   +   +T   ++   GN   A+I 
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 7e-09
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 200 HFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILE--NLLHSYPDSIEFIDNKNR 257
               A  +   +   +       ++ LHLA ++   + L   + L     +++    K  
Sbjct: 147 LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 206

Query: 258 NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNI--ILVLARN 314
             LH      +A+ +  +L+       I  ++  G TPL +A    H +   +L  A +
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKA---SIEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 34  TSQNGDTALHIAARFGHE--ILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
             +  +TALH+A R      + +++ L   S  +     K  T +H      N    ++ 
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 92  MRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
           +R      +           +E G TPL  A R  
Sbjct: 225 LR---GKASIEI-------ANESGETPLDIAKRLK 249

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 9e-08
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 3/143 (2%)

Query: 104 FDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII 163
           +              L  AV+  D            +       A     + T LH A+ 
Sbjct: 119 YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVR 178

Query: 164 --KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
                 + +   L      ++ +  +    L Y     + +    L     + +   + +
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANES 237

Query: 222 GQSPLHLASQNGQLSILENLLHS 244
           G++PL +A +       E L  +
Sbjct: 238 GETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 183 VRDERNRNPLRYAAALG---HFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
              E +   L  A          I   L     + + +    G + LH          L+
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAECLK 222

Query: 240 NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
            LL     SIE  +      L +A +  H    
Sbjct: 223 LLLR-GKASIEIANESGETPLDIAKRLKHEHCE 254

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 22  EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR 81
           +F   N   +   +  G TALH      +   +  +L+ ++  + + N   ETP+ +A R
Sbjct: 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKR 247

Query: 82  AGNFGAAQIFM 92
             +    ++  
Sbjct: 248 LKHEHCEELLT 258

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 222 GQSPLHLASQNG---QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
            +  LHLA +      L +++  +      ++         LH AA     D +  +LK 
Sbjct: 190 EELVLHLAVKVANQASLPLVD-FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNI--ILVLARN 314
                L+ + +  G T L +A   +H     +L  A+ 
Sbjct: 249 RA---LVGTVNEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 34  TSQNGDTALHIAARFGHE--ILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
                +  LH+A +  ++  + +++ +      +        T +H AA        ++ 
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 92  MRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
           ++              +   +E G T L  A +K
Sbjct: 246 LKGRAL----------VGTVNEAGETALDIARKK 269

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 3/147 (2%)

Query: 110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQF-- 167
           +R       L  A+   D            +  +             +LH A+  +    
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 168 VVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLH 227
           + +   +      ++ +       L YAA          L  +  +LV   +  G++ L 
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALD 264

Query: 228 LASQNGQLSILENLLHSYPDSIEFIDN 254
           +A +       E L  +   +  F  +
Sbjct: 265 IARKKHHKECEELLEQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 22  EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR 81
           +F   NG  +   + +G+TALH AA +     +  +LK ++  V   N   ET + +A +
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARK 268

Query: 82  AGNFGAAQIFM 92
             +    ++  
Sbjct: 269 KHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
           +     +G + LH A+   Q   L+ LL      +  ++      L +A +  H +  
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 244 SYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL------INSSDVDGNTPLH 297
             P            +LHLA +  +   +      P V+ +      +++   DGNT LH
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASL------PLVDFIIQNGGHLDAKAADGNTALH 231

Query: 298 LAAINNHFNIILVLARN 314
            AA+ N  + + +L + 
Sbjct: 232 YAALYNQPDCLKLLLKG 248

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 9e-06
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 6/178 (3%)

Query: 135 IKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRY 194
           + K PE  R     +  P     +             +                    R 
Sbjct: 148 LTKLPEI-RGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRA 206

Query: 195 AAALGHFKIACRLSDEDDSLVYQHDC-NGQSPLHLASQNGQLSILENLLHSYPDSIEFID 253
           +                  + + +   +  +PL  A+    L   E LL +  + +   D
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQAD 265

Query: 254 NKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           +  R  LH A   GH  +    LK+      + + D +G  PL +A    + +I+ +L
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 9/111 (8%)

Query: 6   HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLV 65
             L +A          EF   NG  +      G   LH A   GH  L    LK  +D +
Sbjct: 237 TPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-L 294

Query: 66  SVPNHKSETPMHVAARAGNFGAAQIF----MRPHGNGNNTG---TFDDILR 109
              + +   P+ +A    N     +     MR            T+ DI R
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 34  TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
             Q+  T L  A      +L  E L      V+  +     P+H A   G+ G A +F++
Sbjct: 231 GGQDNATPLIQATAANS-LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
               G + G        RD EG  PL  A+  
Sbjct: 290 ---RGADLGA-------RDSEGRDPLTIAMET 311

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 226 LHLASQNGQL-SILENLLH----SYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
           L  A  N  L S+LE   +      P            +LHLA +  +   +        
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL------ 189

Query: 281 VEDLI-NSSDVD-----GNTPLHLAAINNHFNIILVLARN 314
           V+ +I N   +D     GNT LH AA+ N  + + +L + 
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-47  Score=335.11  Aligned_cols=291  Identities=22%  Similarity=0.236  Sum_probs=248.6

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccC-CCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQ-NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      .++|+.|++.|+.+.|+.|+.. |.+++.++. .|+||||+|+..|+.++|++|++.++.. ...+..+.+|++.++..+
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHHHHhcc
Confidence            5689999999999999888876 567887764 5999999999999999999999999874 557889999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccc----cccccCCCCCchHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY----NNKAKQGPNNLTLLH  159 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~----~~~~~~~~~~~t~lh  159 (316)
                      ....+..++..+..          ++..|..|+||||+|+..++.++++.++..+..+...    ......+..|.||||
T Consensus       104 ~~~~~~~~~~~~~~----------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~  173 (337)
T 4g8k_A          104 SVKLLKLFLSKGAD----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  173 (337)
T ss_dssp             CHHHHHHHHTTTCC----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred             cchhhHHhhhccch----------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence            99999999876543          4457899999999999999999999999998765311    111234567899999


Q ss_pred             HHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCc---H-HHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          160 SAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGH---F-KIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       160 ~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~-~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      +|+..|+.++++.||...+.+++.+|..|.||+|+++..+.   . .+++.|+ ..+.+++.+|..|+||||+|+..|+.
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl-~~gad~n~~d~~g~t~L~~a~~~~~~  252 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL-DHGADVNVRGERGKTPLILAVEKKHL  252 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHH-HTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhhhh
Confidence            99999999999999987777899999999999999887554   2 3455555 45566788999999999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      ++++.|+...+.+++.+|..|+||||+|++.|+.+++++|++.|.        |-++.+|||+|++.|+.++|++|+++|
T Consensus       253 ~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA--------d~n~~~~L~~A~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA--------STDCGDLVMTARRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC--------SSTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--------CCCCCCHHHHHHHcCCHHHHHHHHHCc
Confidence            999999988777889999999999999999999999999999874        224568999999999999999999987


Q ss_pred             C
Q 048248          316 S  316 (316)
Q Consensus       316 ~  316 (316)
                      +
T Consensus       325 A  325 (337)
T 4g8k_A          325 A  325 (337)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-47  Score=344.57  Aligned_cols=299  Identities=25%  Similarity=0.365  Sum_probs=238.9

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ..+|||.|+..|+.+.++.|+.. +.+++..+..|+||||+|+..|+.++|++|++.+++. +..+..|.||||+|+..|
T Consensus        47 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g  124 (437)
T 1n11_A           47 VETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREG  124 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcC
Confidence            45799999999999999777765 4667888889999999999999999999999988764 556778999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCC--cc---------------------hhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCC
Q 048248           84 NFGAAQIFMRPHGNGNNTG--TF---------------------DDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPE  140 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~--~~---------------------~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~  140 (316)
                      +.+++++|++.+.......  +.                     ...++..+..|.||||+|+..++.++++.|+..+..
T Consensus       125 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  204 (437)
T 1n11_A          125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  204 (437)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             CHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            9999998887655432111  00                     001233466788888888888888888888877655


Q ss_pred             cccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCC
Q 048248          141 PIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDC  220 (316)
Q Consensus       141 ~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~  220 (316)
                      +.      ..+..|.||||+|+..|+.++++.|+..+. .++.++..|.||||+|+..|+.++++.|+..+. +.+..|.
T Consensus       205 ~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~  276 (437)
T 1n11_A          205 PH------SPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-NGNLGNK  276 (437)
T ss_dssp             SC------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CTTCCCT
T ss_pred             CC------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-CCCCCCC
Confidence            32      234567889999999999888888887664 478888889999999999999998888887654 4566788


Q ss_pred             CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHH
Q 048248          221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA  300 (316)
Q Consensus       221 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  300 (316)
                      .|+||||+|+..|+.+++++|++.+. .++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|+
T Consensus       277 ~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---d~n~~~~~g~t~L~~A~  352 (437)
T 1n11_A          277 SGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA---DVNAKTKLGYSPLHQAA  352 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC---CTTCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCc-cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC---CCCCCCCCCCCHHHHHH
Confidence            89999999999999999999998754 468888899999999999999999999998764   46778888999999999


Q ss_pred             HcCChhHHHHHhhcCC
Q 048248          301 INNHFNIILVLARNMS  316 (316)
Q Consensus       301 ~~~~~~~~~~Ll~~~~  316 (316)
                      +.|+.++|++|+++++
T Consensus       353 ~~g~~~iv~~Ll~~ga  368 (437)
T 1n11_A          353 QQGHTDIVTLLLKNGA  368 (437)
T ss_dssp             HTTCHHHHHHHHHTTC
T ss_pred             HCChHHHHHHHHHCcC
Confidence            9999999999998763

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.9e-47  Score=341.86  Aligned_cols=298  Identities=25%  Similarity=0.340  Sum_probs=207.7

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ..+|||.|+..|+.+.++.|+.. +.+++..+..|.||||+|+..|+.++|++|++.++.. +..+.+|+||||+|+..|
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCC
Confidence            56799999999999999888866 5678888999999999999999999999999998874 567889999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcc--h-----------h----------hhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCC
Q 048248           84 NFGAAQIFMRPHGNGNNTGTF--D-----------D----------ILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPE  140 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~--~-----------~----------~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~  140 (316)
                      +.+++++|++.+.+.+.....  .           +          .....+..|.||||+|+..++.++++.|+..+..
T Consensus        92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  171 (437)
T 1n11_A           92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  171 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            999999999976653321100  0           0          0111234455555555555555555555554433


Q ss_pred             cccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCC
Q 048248          141 PIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDC  220 (316)
Q Consensus       141 ~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~  220 (316)
                      +      +..+..|.||||+|+..++.++++.|+..+. .++..+..|.||||+|+..|+.++++.|++.+.. ++..+.
T Consensus       172 ~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~  243 (437)
T 1n11_A          172 P------NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESV  243 (437)
T ss_dssp             T------TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             C------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCC
Confidence            2      2234455666666666666666666655443 2455566666666666666666666666654433 345566


Q ss_pred             CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHH
Q 048248          221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA  300 (316)
Q Consensus       221 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  300 (316)
                      .|.||||+|+..|+.+++++|++.+. .++..+..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|+
T Consensus       244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~  319 (437)
T 1n11_A          244 QGVTPLHLAAQEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV---MVDATTRMGYTPLHVAS  319 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC---CTTCCCSSCCCHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCc---cCCCCCCCCCCHHHHHH
Confidence            67777777777777777777776543 346667777777777777777777777776542   35667778888888888


Q ss_pred             HcCChhHHHHHhhcC
Q 048248          301 INNHFNIILVLARNM  315 (316)
Q Consensus       301 ~~~~~~~~~~Ll~~~  315 (316)
                      ..|+.++|++|++++
T Consensus       320 ~~g~~~~v~~Ll~~g  334 (437)
T 1n11_A          320 HYGNIKLVKFLLQHQ  334 (437)
T ss_dssp             HSSCSHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHhcC
Confidence            888888888888765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.6e-45  Score=309.36  Aligned_cols=258  Identities=21%  Similarity=0.207  Sum_probs=155.7

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCc
Q 048248           38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNT  117 (316)
Q Consensus        38 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t  117 (316)
                      |.||||.|++.|+.++|++|++.+.......+..|+||||+|+..|+.+++++|++.+..          +...|..|.|
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------~~~~~~~g~t   74 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----------PVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTCCC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------CcccCCCCCC
Confidence            455555555555555555555555443332244455555555555555555555554322          1223455555


Q ss_pred             HHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccc----------ccC
Q 048248          118 PLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR----------DER  187 (316)
Q Consensus       118 ~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~----------d~~  187 (316)
                      |||+|+..++.++++.|+..+..+.      ..+..|.||||+|+..|+.++++.|+..+.+ ++..          +..
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~  147 (285)
T 1wdy_A           75 PFLLAAIAGSVKLLKLFLSKGADVN------ECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKG  147 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTT------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccC
Confidence            5555555555555555555543321      2233455566666665665555555554432 3333          566


Q ss_pred             CCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC----HhHHHHHHhhCCCCccccccCCCcHHHHH
Q 048248          188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ----LSILENLLHSYPDSIEFIDNKNRNILHLA  263 (316)
Q Consensus       188 g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  263 (316)
                      |.||||+|+..|+.++++.|++..+.+++..|..|.||||+|+..++    .+++++|++.+. +++.+|..|+||||+|
T Consensus       148 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~g~t~L~~A  226 (285)
T 1wdy_A          148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILA  226 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTSCCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC-CCCCcCCCCCcHHHHH
Confidence            77777777777777777777766555666667777777777777777    677777776543 3566777777777777


Q ss_pred             HHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          264 AQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       264 ~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      +..|+.+++++|++...  ..++.+|..|+||||+|++.++.+++++|+++|
T Consensus       227 ~~~~~~~~v~~Ll~~~g--~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          227 VEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHTTCHHHHHHHHHSSS--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHhccC--CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            77777777777776322  235666777777777777777777777777765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2e-45  Score=325.55  Aligned_cols=290  Identities=21%  Similarity=0.285  Sum_probs=219.0

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCC-----------------------ccccccCCCChHHHHHHHhCCHHHHHHHHhc
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGN-----------------------RILGTSQNGDTALHIAARFGHEILVMEILKH   60 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~-----------------------~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~   60 (316)
                      ...+|+.++..|+.+.++.++.+...                       ....++..|.||||+|+..+. +++++|+..
T Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~  115 (373)
T 2fo1_E           37 SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE  115 (373)
T ss_dssp             ---------------------------------------------------------CCCHHHHHHHSSS-CCCSCCSTT
T ss_pred             cccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhccc
Confidence            45677788888887777655422210                       122456789999999999664 677777653


Q ss_pred             CCCccccCC-CCCCcHHHHHHHhCChhHHHHhh--------ccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHH
Q 048248           61 QSDLVSVPN-HKSETPMHVAARAGNFGAAQIFM--------RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMA  131 (316)
Q Consensus        61 ~~~~~~~~~-~~g~tpLh~A~~~g~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  131 (316)
                      .   ++..+ ..|+||||+|+..|+.+++++|+        +.+.+          ++..|..|.||||+|+..++.+++
T Consensus       116 ~---~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~----------vn~~d~~g~TpL~~A~~~g~~~iv  182 (373)
T 2fo1_E          116 S---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD----------VNAMDCDENTPLMLAVLARRRRLV  182 (373)
T ss_dssp             T---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC----------TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             c---ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC----------CcCCCCCCCCHHHHHHHcChHHHH
Confidence            2   33445 68999999999999998888776        33332          445689999999999999999999


Q ss_pred             HHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcc--ccccccccCCCcHHHHHHHhC---cHHHHHH
Q 048248          132 FTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKR--DLINVRDERNRNPLRYAAALG---HFKIACR  206 (316)
Q Consensus       132 ~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~--~~~~~~d~~g~tpLh~A~~~g---~~~~~~~  206 (316)
                      +.|+..++++.      ..+..|.||||+|+..|+.++++.|+..+.  ..++..|..|.||||+|+..+   +.++++.
T Consensus       183 ~~Ll~~ga~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~  256 (373)
T 2fo1_E          183 AYLMKAGADPT------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL  256 (373)
T ss_dssp             HHHHHTTCCSC------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHH
T ss_pred             HHHHHCCCCCc------ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHH
Confidence            99999887652      356688999999999999999999987652  457889999999999999988   7899999


Q ss_pred             hhcCCCCccc-------ccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          207 LSDEDDSLVY-------QHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       207 ll~~~~~~~~-------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      |+..+.....       ..|..|+||||+|+..|+.++|++|++.++.+++.+|..|+||||+|+..|+.+++++|++.+
T Consensus       257 Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  336 (373)
T 2fo1_E          257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG  336 (373)
T ss_dssp             HHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9987654321       256789999999999999999999999887788999999999999999999999999999986


Q ss_pred             ccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          280 EVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       280 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      .   .++.+|..|+||||+|+..|+.+++++|++++.
T Consensus       337 a---d~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          337 A---SVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             C---CSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             C---CccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            4   467889999999999999999999999999763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.9e-43  Score=309.72  Aligned_cols=285  Identities=19%  Similarity=0.240  Sum_probs=241.1

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ..++||.|+..|+.+.++.++...+..++..+..|+||||+|+..|+.++|++|++.+.+ ++..+..|+||||+|+..|
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCC
Confidence            467999999999999999999887888889999999999999999999999999999877 4567889999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHH--
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA--  161 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A--  161 (316)
                      +.+++++|++.+..          ++..|..|+||||+|+..++.++++.|++.+.++.      ..+..|.||+++|  
T Consensus       103 ~~~iv~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~~~l~~a~~  166 (351)
T 3utm_A          103 HYEVTELLLKHGAC----------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT------LVNCHGKSAVDMAPT  166 (351)
T ss_dssp             CHHHHHHHHHTTCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHCSS
T ss_pred             CHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc------cccCCCCcchHHHhh
Confidence            99999999987544          34468899999999999999999999999887653      2355677777654  


Q ss_pred             -------------------HHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHh---CcHHHHHHhhcCCCCcccccC
Q 048248          162 -------------------IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAAL---GHFKIACRLSDEDDSLVYQHD  219 (316)
Q Consensus       162 -------------------~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~~~~ll~~~~~~~~~~d  219 (316)
                                         +..++...+..++..... ....+..|.||||+|+..   +..++++.|+..+ .+++.+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~  244 (351)
T 3utm_A          167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKN  244 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCC
T ss_pred             hhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcC
Confidence                               455666666666655432 344677899999999998   4567888887665 4567789


Q ss_pred             CCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHH
Q 048248          220 CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA  299 (316)
Q Consensus       220 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A  299 (316)
                      ..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||+|+|
T Consensus       245 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---d~~~~~~~g~tal~~a  320 (351)
T 3utm_A          245 KDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS---DPSIISLQGFTAAQMG  320 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC---CCCCcCCCCCChhhhh
Confidence            99999999999999999999999875 4579999999999999999999999999999875   3677899999999998


Q ss_pred             HHcCChhHHHHHhhcC
Q 048248          300 AINNHFNIILVLARNM  315 (316)
Q Consensus       300 ~~~~~~~~~~~Ll~~~  315 (316)
                          +.+++++|.++.
T Consensus       321 ----~~~~~~~l~~~~  332 (351)
T 3utm_A          321 ----NEAVQQILSEST  332 (351)
T ss_dssp             ----CHHHHHHHHHC-
T ss_pred             ----hHHHHHHHHhcc
Confidence                678888887754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-43  Score=297.74  Aligned_cols=265  Identities=22%  Similarity=0.225  Sum_probs=229.6

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccc-cCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGT-SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARA   82 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   82 (316)
                      ..++|+.|++.|+.+.++.++..+ .+++.. +..|+||||+|+..|+.+++++|++.+... ...+.+|.||||+|+..
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHc
Confidence            467999999999999998888765 456655 788999999999999999999999998774 55788999999999999


Q ss_pred             CChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCccccccc----ccCCCCCchHH
Q 048248           83 GNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNK----AKQGPNNLTLL  158 (316)
Q Consensus        83 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~----~~~~~~~~t~l  158 (316)
                      |+.+++++|++.+..          +...|..|+||||+|+..++.++++.|+..+..+......    ...+..|.|||
T Consensus        83 ~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T 1wdy_A           83 GSVKLLKLFLSKGAD----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             TCHHHHHHHHHTTCC----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             CCHHHHHHHHHcCCC----------CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence            999999999987544          3456889999999999999999999999998765321100    01156789999


Q ss_pred             HHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCc----HHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC
Q 048248          159 HSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGH----FKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ  234 (316)
Q Consensus       159 h~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~  234 (316)
                      |+|+..|+.++++.|+...+..++.+|..|.||||+|+..++    .++++.|++.+ .+++.+|..|.||||+|+..|+
T Consensus       153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCC
Confidence            999999999999999988667789999999999999999998    77888888765 4567789999999999999999


Q ss_pred             HhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCccc
Q 048248          235 LSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV  281 (316)
Q Consensus       235 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~  281 (316)
                      .+++++|++..+.+++.+|..|+||||+|+..|+.+++++|++.|..
T Consensus       232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999966777899999999999999999999999999998753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.7e-43  Score=305.74  Aligned_cols=261  Identities=21%  Similarity=0.195  Sum_probs=224.6

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCC
Q 048248           36 QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEG  115 (316)
Q Consensus        36 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  115 (316)
                      ..|.||||.|++.|+.++|++||+.|+++....+..|+||||+|+..|+.+++++|++.++..          ..++..+
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~----------~~~~~~~   92 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP----------VLRKKNG   92 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTC
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch----------hhhccCC
Confidence            357899999999999999999999998754434456999999999999999999999976553          3468899


Q ss_pred             CcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccc----------ccc
Q 048248          116 NTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLIN----------VRD  185 (316)
Q Consensus       116 ~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~----------~~d  185 (316)
                      .+|++.++..+...+...++..+.+.      +..+..|.||||+|+..|+.++++.|+..+.+ ++          ..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~  165 (337)
T 4g8k_A           93 ATPFILAAIAGSVKLLKLFLSKGADV------NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLR  165 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCT------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCC-----CT
T ss_pred             CchhHHHHhcccchhhHHhhhccchh------hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhcccccccccc
Confidence            99999999999999999998876654      33566899999999999999999999987643 33          345


Q ss_pred             cCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC----HhHHHHHHhhCCCCccccccCCCcHHH
Q 048248          186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ----LSILENLLHSYPDSIEFIDNKNRNILH  261 (316)
Q Consensus       186 ~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~tpLh  261 (316)
                      ..|.||||+|++.|+.++++.|+...+.+++.+|..|.||+|.++..+.    ..++++|++.+ .+++.+|..|+||||
T Consensus       166 ~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~  244 (337)
T 4g8k_A          166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLI  244 (337)
T ss_dssp             TCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHH
T ss_pred             CCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHH
Confidence            6799999999999999999999988888888899999999998876554    35788888765 457999999999999


Q ss_pred             HHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       262 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      +|+..|+.+++++|+....  ..++.+|.+|+||||+|++.|+.++|++|+++|+
T Consensus       245 ~a~~~~~~~~v~~Ll~~~~--~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  297 (337)
T 4g8k_A          245 LAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  297 (337)
T ss_dssp             HHHHTTCHHHHHHHHTSTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHhhhhHHHHHHHHhcC--CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999998654  3478899999999999999999999999999874

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.4e-43  Score=312.86  Aligned_cols=270  Identities=16%  Similarity=0.123  Sum_probs=223.3

Q ss_pred             ccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhh
Q 048248           30 RILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILR  109 (316)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (316)
                      ..+..+..|+||||+|+..|+.++|++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.+...           
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------   79 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----------   79 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----------
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----------
Confidence            3456677899999999999999999999999876 4567889999999999999999999999876532           


Q ss_pred             ccCCCCCcHHHHHHhcCChhHHHHHHhh----CCCcccc-----------cccccCCCCCchHHHHHHHhC--cHHHHHH
Q 048248          110 KRDEEGNTPLHNAVRKCDGKMAFTMIKK----DPEPIRY-----------NNKAKQGPNNLTLLHSAIIKS--QFVVMAK  172 (316)
Q Consensus       110 ~~~~~g~t~L~~a~~~~~~~~~~~ll~~----~~~~~~~-----------~~~~~~~~~~~t~lh~A~~~~--~~~~~~~  172 (316)
                       .+.+|.||||+|+..++.++++.|+..    +..+...           ......+..|.||||+|+..|  +.++++.
T Consensus        80 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~  158 (364)
T 3ljn_A           80 -SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI  158 (364)
T ss_dssp             -CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred             -cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence             235799999999999999999999998    4433210           011114557899999999999  9999999


Q ss_pred             HHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCC----cccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCC
Q 048248          173 ILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS----LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS  248 (316)
Q Consensus       173 ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  248 (316)
                      |+..+ .+++.+|..|.||||+|+..|+.++++.|++.+..    +++..|..|+||||+|+..|+.++|++|++.+ .+
T Consensus       159 Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad  236 (364)
T 3ljn_A          159 LVQLG-ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-ID  236 (364)
T ss_dssp             HHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CC
T ss_pred             HHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            99886 45899999999999999999999999999986554    26778999999999999999999999999875 45


Q ss_pred             ccccccCCCcHHHHHHHcCChhHHHHHhcCccccc---------ccccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 048248          249 IEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED---------LINSSDVDGNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       249 ~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~---------~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                      ++.+|..|+||||+|+..|+.+++++|++.+....         .....+..++||+++|+..++.+.+..|++.
T Consensus       237 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE  311 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHH
Confidence            79999999999999999999999999998754321         1123567899999999999988777777654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.9e-42  Score=293.54  Aligned_cols=254  Identities=16%  Similarity=0.155  Sum_probs=163.2

Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHhcCC----------CccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcc
Q 048248           35 SQNGDTALHIAARFGHEILVMEILKHQS----------DLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF  104 (316)
Q Consensus        35 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~----------~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~  104 (316)
                      ...|.|+||+|+..|+...+..++..++          ......+.+|+||||+|+..|+.+++++|++.+..       
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-------   84 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-------   84 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-------
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-------
Confidence            4567788888888777655555443321          11234566778888888888888888888775433       


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccc
Q 048248          105 DDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR  184 (316)
Q Consensus       105 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~  184 (316)
                         ++.+|.+|+||||+|+..++.++++.|++.+.++      +..+..|.||||+|+..|+.++++.|+..+.+ ++. 
T Consensus        85 ---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-  153 (285)
T 3d9h_A           85 ---VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV------NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-  153 (285)
T ss_dssp             ---SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC-
T ss_pred             ---CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCC-
Confidence               3345677888888888888888888888776543      23455677888888888888888777766543 333 


Q ss_pred             ccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHH
Q 048248          185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA  264 (316)
Q Consensus       185 d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  264 (316)
                      +..|.||||+|+..|+.++++.|+..+. +++.+|..|+||||+|+..|+.+++++|++.+.. ++ .+..|.||||+|+
T Consensus       154 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~  230 (285)
T 3d9h_A          154 ESDLASPIHEAARRGHVECVNSLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVV  230 (285)
T ss_dssp             SCTTSCHHHHHHHHTCHHHHHHHHHTTC-CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHH
Confidence            3458888888888888888887776554 4556777888888888888888888888876543 45 3777888888888


Q ss_pred             HcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 048248          265 QNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       265 ~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                      ..|+.+++++|++.+.   .++.+|.+|+||||+|+  ++.+++++|+++
T Consensus       231 ~~~~~~~v~~Ll~~ga---d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          231 RTASEELACLLMDFGA---DTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             HTTCHHHHHHHHHTTC---CTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            8888888888887753   35677888888888887  456788888775

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-41  Score=285.80  Aligned_cols=230  Identities=22%  Similarity=0.244  Sum_probs=116.0

Q ss_pred             ccccccCCCChHHHHHHHhC-------------CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCC
Q 048248           30 RILGTSQNGDTALHIAARFG-------------HEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG   96 (316)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~   96 (316)
                      +++.++.+|+||||+|+..|             +.+++++|+..++......+..|+||||+|+..|+.+++++|+    
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----   77 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL----   77 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH----
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH----
Confidence            35667888999999998877             4445555555444433333444555555555555555554444    


Q ss_pred             CCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 048248           97 NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEA  176 (316)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~  176 (316)
                                                             +.+.++      +..+..|.||||+|+..|+.++++.|+..
T Consensus        78 ---------------------------------------~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  112 (253)
T 1yyh_A           78 ---------------------------------------EASADA------NIQDNMGRTPLHAAVSADAQGVFQILIRN  112 (253)
T ss_dssp             ---------------------------------------HTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHHS
T ss_pred             ---------------------------------------HcCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                                                   443332      12234455666666666666666666665


Q ss_pred             ccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCC
Q 048248          177 KRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKN  256 (316)
Q Consensus       177 ~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  256 (316)
                      +...++.++..|.||||+|+..|+.++++.|+..+ .+++.+|..|+||||+|+..|+.+++++|++.+. +++.+|..|
T Consensus       113 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g  190 (253)
T 1yyh_A          113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNNRE  190 (253)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTS
T ss_pred             CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCC
Confidence            54445666666666666666666666666666543 3344566666677777776677777776666543 346666667


Q ss_pred             CcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          257 RNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       257 ~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      +||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|++.|+.+++++|.+
T Consensus       191 ~tpL~~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          191 ETPLFLAAREGSYETAKVLLDHFA---NRDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCC---CccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            777777777777777777666653   245566667777777777777777766654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=289.31  Aligned_cols=252  Identities=14%  Similarity=0.185  Sum_probs=199.3

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhc----------CCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLN----------GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSE   73 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~----------~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~   73 (316)
                      ..+++|.|+..|+.+.+.+++...          ...++..+..|+||||+|+..|+.++|++|++.+.+ ++..+.+|+
T Consensus        15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~g~   93 (285)
T 3d9h_A           15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHV   93 (285)
T ss_dssp             ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECTTCC
T ss_pred             HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCC
Confidence            678999999999999998866543          223556788999999999999999999999998876 456788999


Q ss_pred             cHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCC
Q 048248           74 TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN  153 (316)
Q Consensus        74 tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  153 (316)
                      ||||+|+..|+.+++++|++.+..          ++..|..|+||||+|+..++.++++.|+..+....       .+..
T Consensus        94 t~L~~A~~~g~~~~v~~Ll~~ga~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~~  156 (285)
T 3d9h_A           94 SPLHEACLGGHLSCVKILLKHGAQ----------VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-------PESD  156 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC----------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-------CSCT
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-------CCCC
Confidence            999999999999999999987544          34468899999999999999999999999876652       1335


Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcC
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG  233 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g  233 (316)
                      |.||||+|+..|+.++++.|+..+. +++.+|..|.||||+|+..|+.++++.|++.+.. ++ .|..|.||||+|+..|
T Consensus       157 g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          157 LASPIHEAARRGHVECVNSLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTA  233 (285)
T ss_dssp             TSCHHHHHHHHTCHHHHHHHHHTTC-CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcC
Confidence            8999999999999999999998765 5899999999999999999999999999987654 44 4889999999999999


Q ss_pred             CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      +.+++++|++.+ .+++.+|..|+||||+|+  ++.+++++|++..
T Consensus       234 ~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~  276 (285)
T 3d9h_A          234 SEELACLLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLERE  276 (285)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred             CHHHHHHHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence            999999999875 457999999999999999  5679999999873

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.5e-42  Score=290.18  Aligned_cols=259  Identities=19%  Similarity=0.163  Sum_probs=180.6

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHhcCCC--ccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhh
Q 048248           32 LGTSQNGDTALHIAARFGHEILVMEILKHQSD--LVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILR  109 (316)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (316)
                      +.++..|+||||+|+..|+.++|++|++.++.  .++..+..|+||||+|+..|+.+++++|++.++.          +.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------~~   72 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG----------VL   72 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------SS
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CC
Confidence            45678899999999999999999999987665  2456778899999999999999999999987554          23


Q ss_pred             ccCCCCCcHHHHHHhcCChhHHHHHHhhCCCccccc-------ccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccc
Q 048248          110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYN-------NKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLIN  182 (316)
Q Consensus       110 ~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~-------~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~  182 (316)
                      ..|..|+||||+|+..++.++++.|+..++......       ........+.++++.++..+....+..++...+..++
T Consensus        73 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (282)
T 1oy3_D           73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE  152 (282)
T ss_dssp             CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTT
T ss_pred             CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCC
Confidence            457889999999999999999999998775532110       0011123456788887776665555555555566688


Q ss_pred             ccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccC-CCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHH
Q 048248          183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHD-CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH  261 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  261 (316)
                      .+|..|.||||+|+..|+.++++.|++.+... +..+ ..|+||||+|+..|+.++|++|++.+ .+++.+|..|+||||
T Consensus       153 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~  230 (282)
T 1oy3_D          153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLG  230 (282)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHH
Confidence            89999999999999999999999999876554 4455 45999999999999999999999885 457999999999999


Q ss_pred             HHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCCh
Q 048248          262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHF  305 (316)
Q Consensus       262 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~  305 (316)
                      +|+..|+.+++++|++.+.   .++.+|..|.|||++|......
T Consensus       231 ~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          231 SALLRPNPILARLLRAHGA---PEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHHTSSCHHHHHHHHHTTC---CCCCCC----------------
T ss_pred             HHHHcCCcHHHHHHHHcCC---CcCcCCCcccccccccCCcccc
Confidence            9999999999999999875   3678999999999999886643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.3e-41  Score=283.88  Aligned_cols=212  Identities=23%  Similarity=0.246  Sum_probs=148.9

Q ss_pred             cccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccc
Q 048248           65 VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY  144 (316)
Q Consensus        65 ~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~  144 (316)
                      ++.+|.+|+||||+|+..|+...+                              ...+...++.++++.|+..++.... 
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~------------------------------~~~~~~~~~~~~v~~Ll~~g~~~~~-   51 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLET------------------------------GNSEEEEDAPAVISDFIYQGASLHN-   51 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCcHHHHHHhccccccc------------------------------cchhhcCCChHHHHHHHHccCCccc-
Confidence            345778999999999998742100                              0013455667788888887765432 


Q ss_pred             cccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCc
Q 048248          145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS  224 (316)
Q Consensus       145 ~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~t  224 (316)
                          ..+..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+..|+.++++.|+..++.+++.++..|.|
T Consensus        52 ----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  126 (253)
T 1yyh_A           52 ----QTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT  126 (253)
T ss_dssp             ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCC
T ss_pred             ----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCc
Confidence                235678999999999999999999998764 589999999999999999999999999999888778888999999


Q ss_pred             HHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCC
Q 048248          225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       225 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  304 (316)
                      |||+|+..|+.+++++|++.+. .++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|++.|+
T Consensus       127 ~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          127 PLILAARLAVEGMLEDLINSHA-DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA---NKDMQNNREETPLFLAAREGS  202 (253)
T ss_dssp             HHHHHHHHTCSSHHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHcChHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHCCC
Confidence            9999999999999999998754 578999999999999999999999999999864   367889999999999999999


Q ss_pred             hhHHHHHhhcCC
Q 048248          305 FNIILVLARNMS  316 (316)
Q Consensus       305 ~~~~~~Ll~~~~  316 (316)
                      .+++++|++++.
T Consensus       203 ~~~v~~Ll~~ga  214 (253)
T 1yyh_A          203 YETAKVLLDHFA  214 (253)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.4e-41  Score=294.06  Aligned_cols=263  Identities=21%  Similarity=0.231  Sum_probs=223.7

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhcc
Q 048248           32 LGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKR  111 (316)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (316)
                      ...+..|.|+||.|++.|+.+.|+.|+...+...+..|..|.||||+|+..|+.+++++|++.+.+          ++..
T Consensus        18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------~~~~   87 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD----------VHAK   87 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCC
T ss_pred             eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCcc
Confidence            344567899999999999999999999875555667888999999999999999999999987544          3456


Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcH
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP  191 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  191 (316)
                      |..|+||||+|+..++.++++.|++.+.++      +..+..|.||||+|+..|+.++++.|+..+. .++..+..|.||
T Consensus        88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~~~  160 (351)
T 3utm_A           88 DKGGLVPLHNACSYGHYEVTELLLKHGACV------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGA-DPTLVNCHGKSA  160 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCH
T ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCccccCCCCcc
Confidence            889999999999999999999999987664      2346678999999999999999999998764 578899999999


Q ss_pred             HHHHH---------------------HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc---CCHhHHHHHHhhCCC
Q 048248          192 LRYAA---------------------ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN---GQLSILENLLHSYPD  247 (316)
Q Consensus       192 Lh~A~---------------------~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~  247 (316)
                      +++|+                     ..+..+.+..++...... ...+..|.||||+|+..   +..+++++|++.+. 
T Consensus       161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~-  238 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGA-  238 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTC-
T ss_pred             hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCC-
Confidence            88754                     445555666666555443 34678899999999999   55789999998764 


Q ss_pred             CccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          248 SIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       248 ~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      +++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|++.|+.+++++|+++++
T Consensus       239 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  304 (351)
T 3utm_A          239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA---KMNALDSLGQTALHRAALAGHLQTCRLLLSYGS  304 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            478999999999999999999999999998864   478889999999999999999999999999863

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-41  Score=301.06  Aligned_cols=257  Identities=19%  Similarity=0.243  Sum_probs=216.1

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCcccccc-CCCChHHHHHHHhCCHHHHHHHH--------hcCCCccccCCCCCCc
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTS-QNGDTALHIAARFGHEILVMEIL--------KHQSDLVSVPNHKSET   74 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll--------~~~~~~~~~~~~~g~t   74 (316)
                      ..++||.|+..| .+.++.++.   ..++..+ ..|+||||+|+..|+.++|++|+        +.+.+ ++..|.+|.|
T Consensus        94 g~t~L~~Aa~~~-~~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~T  168 (373)
T 2fo1_E           94 SPIKLHTEAAGS-YAITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENT  168 (373)
T ss_dssp             CCCHHHHHHHSS-SCCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCC
T ss_pred             CccHHHHHhcCC-chHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCC
Confidence            467899999955 466644432   4566677 78999999999999988877776        56665 4667889999


Q ss_pred             HHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCC
Q 048248           75 PMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNN  154 (316)
Q Consensus        75 pLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  154 (316)
                      |||+|+..|+.+++++|++.+++.          ...+..|.||||+|+..++.++++.|+..+...   .+....+..|
T Consensus       169 pL~~A~~~g~~~iv~~Ll~~ga~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~d~~g  235 (373)
T 2fo1_E          169 PLMLAVLARRRRLVAYLMKAGADP----------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLK---GDIEELDRNG  235 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS----------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH---HTTSCCCTTS
T ss_pred             HHHHHHHcChHHHHHHHHHCCCCC----------cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc---cChhhcCCCC
Confidence            999999999999999999876543          346889999999999999999999999865210   1223456789


Q ss_pred             chHHHHHHHhC---cHHHHHHHHHhccccccc--------cccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCC
Q 048248          155 LTLLHSAIIKS---QFVVMAKILEAKRDLINV--------RDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQ  223 (316)
Q Consensus       155 ~t~lh~A~~~~---~~~~~~~ll~~~~~~~~~--------~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~  223 (316)
                      .||||+|+..+   +.++++.|+..+.+ ++.        .|..|.||||+|+..|+.++++.|+..++.+++.+|..|+
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~  314 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  314 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCC
Confidence            99999999988   88999999987653 443        5779999999999999999999999988888889999999


Q ss_pred             cHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       224 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      ||||+|+..|+.++|++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus       315 TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          315 TPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            9999999999999999999875 4579999999999999999999999999998754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.3e-40  Score=289.43  Aligned_cols=265  Identities=18%  Similarity=0.151  Sum_probs=220.7

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ..++||.|+..|+.+.++.|+.. +.+++..+..|+||||+|+..|+.++|++|++.++..   .+.+|.||||+|+..|
T Consensus        20 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           20 NMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMAN   95 (364)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcC
Confidence            46799999999999999888866 5778999999999999999999999999999998843   3457999999999999


Q ss_pred             ChhHHHHhhcc----CCCCCC------CCc-chhhhhccCCCCCcHHHHHHhcC--ChhHHHHHHhhCCCcccccccccC
Q 048248           84 NFGAAQIFMRP----HGNGNN------TGT-FDDILRKRDEEGNTPLHNAVRKC--DGKMAFTMIKKDPEPIRYNNKAKQ  150 (316)
Q Consensus        84 ~~~~~~~l~~~----~~~~~~------~~~-~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~  150 (316)
                      +.+++++|++.    +.....      ... ........|..|.||||+|+..+  +.++++.|+..+.++      +..
T Consensus        96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~------~~~  169 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP------TAK  169 (364)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT------TCC
T ss_pred             CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC------ccc
Confidence            99999999986    322110      000 00012226789999999999999  999999999997665      235


Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhcccc----ccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDL----INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPL  226 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~----~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpL  226 (316)
                      +..|.||||+|+..|+.++++.|+..+.+.    ++.+|..|+||||+|+..|+.++++.|++.+ .+++.+|..|+|||
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL  248 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPL  248 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHH
Confidence            668999999999999999999999876532    7889999999999999999999999999765 55678999999999


Q ss_pred             HHHHhcCCHhHHHHHHhhCCCC-----------ccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          227 HLASQNGQLSILENLLHSYPDS-----------IEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       227 h~A~~~g~~~iv~~Ll~~~~~~-----------~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      |+|+..|+.+++++|++.+...           ....+..++|||++|+..|+.+.+..|+..+
T Consensus       249 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             HHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence            9999999999999999985321           1235778999999999999888888877654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.7e-39  Score=268.35  Aligned_cols=227  Identities=22%  Similarity=0.305  Sum_probs=142.2

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhcc
Q 048248           32 LGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKR  111 (316)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (316)
                      +..+.+|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+                
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------------   67 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG----------------   67 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT----------------
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC----------------
Confidence            34455666666666666666666666665543 5555555666666666666666666665432                


Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcH
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP  191 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  191 (316)
                                                 ...      ...+..|.||||+|+..|+.++++.|+..++..++..+..|.||
T Consensus        68 ---------------------------~~~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  114 (237)
T 3b7b_A           68 ---------------------------ALV------DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP  114 (237)
T ss_dssp             ---------------------------CCC------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCH
T ss_pred             ---------------------------CCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCH
Confidence                                       221      11233455666666666666666666665544566666667777


Q ss_pred             HHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhH
Q 048248          192 LRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV  271 (316)
Q Consensus       192 Lh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  271 (316)
                      ||+|+..|+.++++.|++.+. +++.+|..|.||||+|+..|+.+++++|++.+. +++.+|..|.||||+|+..|+.++
T Consensus       115 L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~  192 (237)
T 3b7b_A          115 MIWATEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSPLHIAARENRYDC  192 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHhCCHhH
Confidence            777777777777766665443 344566677777777777777777777776543 356677777777777777777777


Q ss_pred             HHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       272 ~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      +++|++.+.   .++.+|.+|+||||+|+..++...+..|++
T Consensus       193 v~~Ll~~ga---d~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          193 VVLFLSRDS---DVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHTTTC---CTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCC---CCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            777776653   245667777777777777777655555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.8e-40  Score=273.37  Aligned_cols=233  Identities=19%  Similarity=0.210  Sum_probs=142.5

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHh---cCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhh
Q 048248           32 LGTSQNGDTALHIAARFGHEILVMEILK---HQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDIL  108 (316)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~  108 (316)
                      +.+|.+|+||||+|+..|+.+++++|++   ..+..++..+..|+||||+|+..|+.+++++|++.+...          
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------   72 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP----------   72 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence            3456677777777777777777777775   223334556666777777777777777777777644321          


Q ss_pred             hccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCC
Q 048248          109 RKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN  188 (316)
Q Consensus       109 ~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g  188 (316)
                      ...+..|.||||+|+..++.++++.|+..++..                                    ...++..|..|
T Consensus        73 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~------------------------------------~~~~~~~~~~g  116 (241)
T 1k1a_A           73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPG------------------------------------TLDLEARNYDG  116 (241)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT------------------------------------SCCTTCCCTTS
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------------------------------cccccccCcCC
Confidence            223444555555555544444444444443210                                    01345566667


Q ss_pred             CcHHHHHHHhCcHHHHHHhhcCCCCcccccC-CCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          189 RNPLRYAAALGHFKIACRLSDEDDSLVYQHD-CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       189 ~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                      .||||+|+..|+.++++.|++.+... +..+ ..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            77777777777777776666654433 3344 56777777777777777777777664 335677777777777777777


Q ss_pred             ChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          268 HADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       268 ~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      +.+++++|++.+.   .++.+|..|+||||+|+..|+.++++.|+++.
T Consensus       195 ~~~~v~~Ll~~ga---~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          195 LLPLVRTLVRSGA---DSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             CHHHHHHHHHTTC---CTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             CHHHHHHHHhcCC---CCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            7777777777653   25566777777777777777777777776654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.1e-40  Score=271.99  Aligned_cols=226  Identities=20%  Similarity=0.207  Sum_probs=147.5

Q ss_pred             cccHHHHHHHhcCChHHHHHHHH---hcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHH
Q 048248            3 TVDHKLFRALRHGYTDKVREFAR---LNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVA   79 (316)
Q Consensus         3 ~~~~~l~~a~~~g~~~~~~~ll~---~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   79 (316)
                      ...+|||.|+..|+.+.++.++.   ..+..++..+..|+||||+|+..|+.+++++|++.+... ...+..|+||||+|
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A   86 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLA   86 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence            46789999999999999998887   367788889999999999999999999999999988764 55788999999999


Q ss_pred             HHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHH
Q 048248           80 ARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLH  159 (316)
Q Consensus        80 ~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh  159 (316)
                      +..|+.+++++|++.+.....      .+...+..|.||||+|+..++.++++.|+..+.+                   
T Consensus        87 ~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------  141 (241)
T 1k1a_A           87 CEHRSPTCLRALLDSAAPGTL------DLEARNYDGLTALHVAVNTECQETVQLLLERGAD-------------------  141 (241)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSC------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------
T ss_pred             HHcCCHHHHHHHHHcCCCccc------cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-------------------
Confidence            999999999999986542110      1334455555555555555555555555554433                   


Q ss_pred             HHHHhCcHHHHHHHHHhccccccccc-cCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHH
Q 048248          160 SAIIKSQFVVMAKILEAKRDLINVRD-ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL  238 (316)
Q Consensus       160 ~A~~~~~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  238 (316)
                                           ++..+ ..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++
T Consensus       142 ---------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v  199 (241)
T 1k1a_A          142 ---------------------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLV  199 (241)
T ss_dssp             ---------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             ---------------------cccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence                                 33333 44555555555555555555444432 22334455555555555555555555


Q ss_pred             HHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhc
Q 048248          239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK  277 (316)
Q Consensus       239 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~  277 (316)
                      ++|++.+. +++.+|..|+||||+|+..|+.++++.|.+
T Consensus       200 ~~Ll~~ga-~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          200 RTLVRSGA-DSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             HHHHHTTC-CTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             HHHHhcCC-CCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            55554432 235555555555555555555555555443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.3e-39  Score=267.14  Aligned_cols=224  Identities=21%  Similarity=0.246  Sum_probs=130.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhc-cCCCCC
Q 048248           38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRK-RDEEGN  116 (316)
Q Consensus        38 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~g~  116 (316)
                      |+||||+|++.|+.++|++|++.++......+.+|+||||+|+..|+.+++++|++.+....        +.. .+..|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------~~~~~~~~g~   73 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN--------LDDYPDDSGW   73 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC--------GGGCCCTTSC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc--------ccccCCCCCC
Confidence            77888888888888888888888776655567778888888888888888888887642211        111 344455


Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA  196 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  196 (316)
                      ||||+|+..++.++++.|+..+.                                      ...++.+|..|.||||+|+
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~--------------------------------------~~~~~~~~~~g~t~L~~A~  115 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPL--------------------------------------KPDLNKITNQGVTCLHLAV  115 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSS--------------------------------------CCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCC--------------------------------------CcccccCCcCCCCHHHHHH
Confidence            55555555444444444444331                                      1224445555555555555


Q ss_pred             HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          197 ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       197 ~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      ..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..|+.+++++|+
T Consensus       116 ~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          116 GKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             HTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            555555555555442 2334455555566666666566666665555554445555555666666666666666666655


Q ss_pred             -cCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 048248          277 -KQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       277 -~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                       +.+.   .++.+|.+|+||||+|+..   +++++|+++
T Consensus       195 ~~~ga---~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          195 EKYGA---EYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHHCC---CSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HhcCC---CCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence             3332   2445555566666665432   455555443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1e-38  Score=264.85  Aligned_cols=220  Identities=20%  Similarity=0.214  Sum_probs=163.9

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ..+|||.|+..|+.+.++.++.. +.+++..+..|+||||+|+..|+.+++++|++.+... ...+..|.||||+|+..|
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   88 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKG   88 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcC
Confidence            56899999999999999877765 5678888999999999999999999999999988764 557788999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII  163 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~  163 (316)
                      +.+++++|++.+...         +...+.                                       .|.||||+|+.
T Consensus        89 ~~~~~~~Ll~~~~~~---------~~~~~~---------------------------------------~g~t~L~~A~~  120 (237)
T 3b7b_A           89 HYEVVQYLLSNGQMD---------VNCQDD---------------------------------------GGWTPMIWATE  120 (237)
T ss_dssp             CHHHHHHHHTTTCCC---------TTCCCT---------------------------------------TSCCHHHHHHH
T ss_pred             CHHHHHHHHhCCCCC---------cccCCC---------------------------------------CCCCHHHHHHH
Confidence            999999998753211         122233                                       34555555555


Q ss_pred             hCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHh
Q 048248          164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLH  243 (316)
Q Consensus       164 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  243 (316)
                      .++.++++.|+..+. .++.+|..|.||||+|+..|+.++++.|++.+. +++.+|..|.||||+|+..|+.+++++|++
T Consensus       121 ~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          121 YKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence            666666666665443 356667777777777777777777777775543 345567777788888888888888887776


Q ss_pred             hCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          244 SYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       244 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      .+. +++.+|..|+||||+|+..|+.+.+..++
T Consensus       199 ~ga-d~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          199 RDS-DVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             TTC-CTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             cCC-CCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            644 35777777888888888777776555554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-38  Score=263.30  Aligned_cols=224  Identities=20%  Similarity=0.233  Sum_probs=135.7

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCC
Q 048248           37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGN  116 (316)
Q Consensus        37 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  116 (316)
                      .+.||||.|+..|+.+++++|+..++......+.+|.||||+|+..|+.+++++|++.+..          +...|.   
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------~~~~~~---   71 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----------VNDKDD---   71 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------SCCCCT---
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC----------CCCcCC---
Confidence            3556666666666666666666655544444555666666666666666666666654322          111233   


Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA  196 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  196 (316)
                                                          .|.||||+|+..|+.++++.|+..+. .++.+|..|.||||+|+
T Consensus        72 ------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~  114 (231)
T 3aji_A           72 ------------------------------------AGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAA  114 (231)
T ss_dssp             ------------------------------------TSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             ------------------------------------CCCCHHHHHHHcCHHHHHHHHHHcCC-CCCCCCCCCCCHHHHHH
Confidence                                                44455555555555555555554432 34555666666666666


Q ss_pred             HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          197 ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       197 ~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      ..|+.++++.|++.+. +++.+|..|.||||+|+..|+.+++++|++.+. +++.+|..|+||||+|+..|+.+++++|+
T Consensus       115 ~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGA-NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             HTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            6666666666665433 334556667777777777777777777766543 35666667777777777777777777777


Q ss_pred             cCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          277 KQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       277 ~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      +.+.   .++.+|..|+||||+|+..++.+++++|.+.+
T Consensus       193 ~~ga---~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          193 TQGA---SIYIENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             HTTC---CSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HCCC---CCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            6643   24556667777777777777777777776543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-39  Score=278.77  Aligned_cols=274  Identities=16%  Similarity=0.185  Sum_probs=222.3

Q ss_pred             HHHhcCChHHHHHHHHhcCCc--------cccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 048248           10 RALRHGYTDKVREFARLNGNR--------ILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR   81 (316)
Q Consensus        10 ~a~~~g~~~~~~~ll~~~~~~--------~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   81 (316)
                      .+++.|..+.++.|+......        ....+..|.||||.||..|+.++|++|++.+.+. +..+.+|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            467888889998988764321        1123456889999999999999999999998774 5678899999999999


Q ss_pred             hCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHH
Q 048248           82 AGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA  161 (316)
Q Consensus        82 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A  161 (316)
                      .|+.+++++|++.+.+          ++..|..|+||||+|+..++.++++.|+..+.++      ...+..|.||||+|
T Consensus        83 ~g~~~~v~~Ll~~ga~----------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~A  146 (299)
T 1s70_B           83 DDNVDMVKFLVENGAN----------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV------GAVNSEGDTPLDIA  146 (299)
T ss_dssp             TTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHC
T ss_pred             cCCHHHHHHHHHCCCC----------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC------CCcCCCCCCHHHHH
Confidence            9999999999987544          3446889999999999999999999999987664      23466889999999


Q ss_pred             HHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHH
Q 048248          162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL  241 (316)
Q Consensus       162 ~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  241 (316)
                      +..++.++++.++...+..++..+..+.++++..        +..++..+.......+..|.||||+|+..|+.+++++|
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  218 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD--------ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL  218 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHH--------HHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999877665665555454444433        44555556555566788999999999999999999999


Q ss_pred             HhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          242 LHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       242 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      ++.+ .+++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|+.. ..++++.|++
T Consensus       219 l~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga---d~~~~d~~g~t~l~~A~~~-~~~~l~~l~~  285 (299)
T 1s70_B          219 IQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC---DMEAVNKVGQTAFDVADED-ILGYLEELQK  285 (299)
T ss_dssp             HTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCTTTSCCSG-GGHHHHHHHH
T ss_pred             HHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHH-HHHHHHHHHH
Confidence            9875 4579999999999999999999999999999864   3678899999999999764 3455555544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=275.61  Aligned_cols=217  Identities=19%  Similarity=0.246  Sum_probs=159.1

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHhcCCCc-------cccCCCCCCcHHHHHHHhCChh-HHHHhhccCCCCCCCCcc
Q 048248           33 GTSQNGDTALHIAARFGHEILVMEILKHQSDL-------VSVPNHKSETPMHVAARAGNFG-AAQIFMRPHGNGNNTGTF  104 (316)
Q Consensus        33 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~-------~~~~~~~g~tpLh~A~~~g~~~-~~~~l~~~~~~~~~~~~~  104 (316)
                      .+|..+.|||+.|+..|+.++|++|++.+...       ....+..|.||||.|+..+... ++++|+..+.+       
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-------   78 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-------   78 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-------
Confidence            34566789999999999999999999876542       3345667899999999887754 67788876544       


Q ss_pred             hhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccc
Q 048248          105 DDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR  184 (316)
Q Consensus       105 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~  184 (316)
                         ++..|.+|+||||+|+..|+.+++++|+..++++      ...+..|.||+|+|+..++.++++.|+..+. +++.+
T Consensus        79 ---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~n~~  148 (269)
T 4b93_B           79 ---VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA------GARNADQAVPLHLACQQGHFQVVKCLLDSNA-KPNKK  148 (269)
T ss_dssp             ---TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCC
T ss_pred             ---CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc------CccCCCCCCccccccccChHHHHHHHHHCCC-CCCCC
Confidence               3456889999999999999999999999987664      2346678999999999999999999887764 58999


Q ss_pred             ccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHH
Q 048248          185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA  264 (316)
Q Consensus       185 d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  264 (316)
                      |..|+||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.++|++|++.+ ++++.+|..|+||||+|+
T Consensus       149 d~~g~TpL~~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~  226 (269)
T 4b93_B          149 DLSGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAE  226 (269)
T ss_dssp             CTTCCCHHHHHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH
Confidence            999999999999999999999999765 456778999999999999999999999999875 457999999999999998


Q ss_pred             HcCC
Q 048248          265 QNGH  268 (316)
Q Consensus       265 ~~g~  268 (316)
                      ++|+
T Consensus       227 ~~~~  230 (269)
T 4b93_B          227 QNSK  230 (269)
T ss_dssp             TTCH
T ss_pred             hCCc
Confidence            8775

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.4e-38  Score=261.53  Aligned_cols=193  Identities=24%  Similarity=0.230  Sum_probs=167.6

Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHH
Q 048248          113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL  192 (316)
Q Consensus       113 ~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  192 (316)
                      ..+.+|||.|+..|+.+.++.++..++...     ...+..|.||||+|+..|+.++++.|++.+. .++.+|..|.|||
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L   77 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLA-----TRTDQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPL   77 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGG-----GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhh-----hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC-CCCCcCCCCCCHH
Confidence            456788888888888888888887765432     2346678999999999999999999998764 5888999999999


Q ss_pred             HHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHH
Q 048248          193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV  272 (316)
Q Consensus       193 h~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~  272 (316)
                      |+|+..|+.++++.|++.+. +++.+|..|.||||+|+..|+.+++++|++.+. .++.++..|.||||+|+..|+.+++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v  155 (231)
T 3aji_A           78 HIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA-NPDAKDHYDATAMHRAAAKGNLKMV  155 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999999999999998755 456789999999999999999999999998764 4688999999999999999999999


Q ss_pred             HHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          273 VFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       273 ~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      ++|++.+.   .++.+|..|+||||+|++.++.+++++|++++.
T Consensus       156 ~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  196 (231)
T 3aji_A          156 HILLFYKA---STNIQDTEGNTPLHLACDEERVEEAKFLVTQGA  196 (231)
T ss_dssp             HHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHhcCC---CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            99998764   467889999999999999999999999999763

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=274.14  Aligned_cols=223  Identities=19%  Similarity=0.226  Sum_probs=164.3

Q ss_pred             CCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCCh-hHHHHHHhhCCCcccccc
Q 048248           68 PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG-KMAFTMIKKDPEPIRYNN  146 (316)
Q Consensus        68 ~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~-~~~~~ll~~~~~~~~~~~  146 (316)
                      .|..+.+||+.|+..|+.+++++|++.+......  ....+...+..|.||||.|+..+.. .++..|+..+.++     
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-----   79 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-----   79 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------CCCCT-----
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-----
Confidence            4667889999999999999999999876543211  1223556788999999999987765 4677888877654     


Q ss_pred             cccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHH
Q 048248          147 KAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPL  226 (316)
Q Consensus       147 ~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpL  226 (316)
                       +..+.+|.||||+|+..|+.+++++|+..+. +++.++..|.||+|+|+..++.++++.|++.+. +++.+|..|+|||
T Consensus        80 -n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~n~~d~~g~TpL  156 (269)
T 4b93_B           80 -NVTSQDGSSPLHVAALHGRADLIPLLLKHGA-NAGARNADQAVPLHLACQQGHFQVVKCLLDSNA-KPNKKDLSGNTPL  156 (269)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTCCCHH
T ss_pred             -CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC-CcCccCCCCCCccccccccChHHHHHHHHHCCC-CCCCCCCCCCCHH
Confidence             3456789999999999999999999998765 578999999999999999999999999987654 5677899999999


Q ss_pred             HHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCC
Q 048248          227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       227 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  304 (316)
                      |+|+..|+.++|++|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.   .++.+|.+|+||||+|+++++
T Consensus       157 ~~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga---d~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          157 IYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGA---SVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC---CSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999875 4579999999999999999999999999999864   478899999999999988775

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-37  Score=264.77  Aligned_cols=256  Identities=15%  Similarity=0.104  Sum_probs=177.2

Q ss_pred             cccHHHHHHHhcCChHHHHHHHHhcCC--ccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH
Q 048248            3 TVDHKLFRALRHGYTDKVREFARLNGN--RILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAA   80 (316)
Q Consensus         3 ~~~~~l~~a~~~g~~~~~~~ll~~~~~--~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   80 (316)
                      ...+|||.|++.|+.+.++.|+..+..  .++..+..|+||||+|+..|+.++|++|++.+++. +..+..|+||||+|+
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~   86 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLAC   86 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            457899999999999999988876543  37788899999999999999999999999998874 567889999999999


Q ss_pred             HhCChhHHHHhhccCCCCCCCCc---chhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchH
Q 048248           81 RAGNFGAAQIFMRPHGNGNNTGT---FDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTL  157 (316)
Q Consensus        81 ~~g~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~  157 (316)
                      ..|+.+++++|+..+........   ...........+.++++.+...........++..     ...+.+..+..|.||
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED-----WRLQLEAENYDGHTP  161 (282)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC-----GGGGTTCCCTTSCCH
T ss_pred             HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh-----hhhcCCCcCCCCcCH
Confidence            99999999999987654321110   0001112234566777776655443332222211     112234567789999


Q ss_pred             HHHHHHhCcHHHHHHHHHhcccccccccc-CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHh
Q 048248          158 LHSAIIKSQFVVMAKILEAKRDLINVRDE-RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLS  236 (316)
Q Consensus       158 lh~A~~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  236 (316)
                      ||+|+..|+.++++.|+..+. .++.++. .|+||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHHcCCcH
Confidence            999999999999999998775 4777775 499999999999999999999987 4566789999999999999999999


Q ss_pred             HHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          237 ILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       237 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                      ++++|++.+. +++.+|..|.|||++|....
T Consensus       240 ~v~~Ll~~ga-~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          240 LARLLRAHGA-PEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHHTTC-CCCCCC--------------
T ss_pred             HHHHHHHcCC-CcCcCCCcccccccccCCcc
Confidence            9999998765 47999999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.6e-37  Score=254.78  Aligned_cols=222  Identities=26%  Similarity=0.319  Sum_probs=153.2

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcC--CCccccCCCCCCcHHHHHHHh
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ--SDLVSVPNHKSETPMHVAARA   82 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~A~~~   82 (316)
                      .+|||.|+..|+.+.++.++..+....+..+..|+||||+|+..|+.+++++|++.+  .+.....+..|+||||+|+..
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            569999999999999999998877666668999999999999999999999999998  444333678899999999999


Q ss_pred             CChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHH
Q 048248           83 GNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAI  162 (316)
Q Consensus        83 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~  162 (316)
                      |+.+++++|++.+...        .+...+..|.||||+|+..                                     
T Consensus        83 ~~~~~~~~Ll~~g~~~--------~~~~~~~~g~t~L~~A~~~-------------------------------------  117 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKP--------DLNKITNQGVTCLHLAVGK-------------------------------------  117 (228)
T ss_dssp             CCHHHHHHHHSSSSCC--------CTTCCCTTCCCHHHHHHHT-------------------------------------
T ss_pred             CCHHHHHHHHhCCCCc--------ccccCCcCCCCHHHHHHHc-------------------------------------
Confidence            9999999999864211        1223344555555555544                                     


Q ss_pred             HhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHH
Q 048248          163 IKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL  242 (316)
Q Consensus       163 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  242 (316)
                        |+.++++.|++.+ .+++.+|..|.||||+|+..|+.++++.|++.+..+++.+|..|+||||+|+..|+.+++++|+
T Consensus       118 --~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          118 --KWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             --TCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             --CCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence              4555555555443 2345556666666666666666666666665554555556666666666666666666666666


Q ss_pred             hhCCCCccccccCCCcHHHHHHHcCChhHHHHHhc
Q 048248          243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK  277 (316)
Q Consensus       243 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~  277 (316)
                      +..+.+++.+|..|+||||+|+..   +++++|++
T Consensus       195 ~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          195 EKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            333344566666666666666443   44444443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=252.53  Aligned_cols=229  Identities=18%  Similarity=0.212  Sum_probs=140.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhcc
Q 048248           32 LGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKR  111 (316)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (316)
                      +..+..|.||||.|+..|+.+++++|++.+.+. ...+..|.||||+|+..|+.+++++|++.+....         ...
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------~~~   72 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD---------QLG   72 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------CCB
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch---------hhc
Confidence            445667888888888888888888888877653 4566778888888888888888888887654322         112


Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcH
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP  191 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  191 (316)
                      +..|.||||+|+..++.++++.|++.+..+      ...+..|.||||+|+..|+.++++.|+..+. .++.+|..|.||
T Consensus        73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~  145 (240)
T 3eu9_A           73 GDLNSTPLHWATRQGHLSMVVQLMKYGADP------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-DVDMMDQNGMTP  145 (240)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCH
T ss_pred             CCcCCChhHHHHHcCCHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHcCHHHHHHHHHhcCC-CccccCCCCCcH
Confidence            344666666666666666666666654433      1233455566666666666666666655443 355556666666


Q ss_pred             HHHHHHhCc-HHHHHHhhcCCCCcccccCC-CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCCh
Q 048248          192 LRYAAALGH-FKIACRLSDEDDSLVYQHDC-NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA  269 (316)
Q Consensus       192 Lh~A~~~g~-~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  269 (316)
                      ||+|+..++ .++++.|+..+.. ++..+. .|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.
T Consensus       146 l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~  223 (240)
T 3eu9_A          146 LMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNV  223 (240)
T ss_dssp             HHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcH
Confidence            666665444 3444444433332 333333 5566666666666666666666554 23455556666666666666666


Q ss_pred             hHHHHHhcCc
Q 048248          270 DVVVFILKQP  279 (316)
Q Consensus       270 ~~~~~Ll~~~  279 (316)
                      +++++|++.+
T Consensus       224 ~~v~~L~~~~  233 (240)
T 3eu9_A          224 WMINHLQEAR  233 (240)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            6666666543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1e-36  Score=250.37  Aligned_cols=214  Identities=21%  Similarity=0.210  Sum_probs=185.9

Q ss_pred             CChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHH
Q 048248           83 GNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAI  162 (316)
Q Consensus        83 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~  162 (316)
                      |+.+++++|++.+....         ...|.+|+||||+|+..++.++++.|++.+.++      ...+..|.||||+|+
T Consensus         2 g~~~~i~~Ll~~g~~~~---------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~   66 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLH---------NQTDRTGETALHLAARYSRSDAAKRLLEASADA------NIQDNMGRTPLHAAV   66 (223)
T ss_dssp             ---CCEETTEETTCCTT---------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcc---------cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHH
Confidence            56677788887654422         234789999999999999999999999987654      235668899999999


Q ss_pred             HhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHH
Q 048248          163 IKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL  242 (316)
Q Consensus       163 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  242 (316)
                      ..|+.++++.|+..++..++..+..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+..|+.+++++|+
T Consensus        67 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  145 (223)
T 2f8y_A           67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA-DVNAVDDLGKSALHWAAAVNNVDAAVVLL  145 (223)
T ss_dssp             HTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC-CCcCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999999999998876789999999999999999999999999998654 46678999999999999999999999999


Q ss_pred             hhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       243 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      +.+ .+++.+|..|.||||+|+..|+.+++++|++.+.   .++.+|..|.||||+|++.++.+++++|++.+.
T Consensus       146 ~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          146 KNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFA---NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC---CCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            885 4578999999999999999999999999999875   367789999999999999999999999998763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=250.97  Aligned_cols=227  Identities=21%  Similarity=0.221  Sum_probs=197.1

Q ss_pred             CCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCccccccc
Q 048248           68 PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNK  147 (316)
Q Consensus        68 ~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~  147 (316)
                      .|..|.||||.|+..|+.+++++|++.+..          +...+..|.||||+|+..++.++++.|++.++....    
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~----   70 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYD----------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ----   70 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCC----------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh----
Confidence            456799999999999999999999987543          344678999999999999999999999998876532    


Q ss_pred             ccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHH
Q 048248          148 AKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLH  227 (316)
Q Consensus       148 ~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh  227 (316)
                       ..+..|.||||+|+..|+.++++.|++.+. .++.+|..|.||||+|+..|+.++++.|++.+. +++.++..|.||||
T Consensus        71 -~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~  147 (240)
T 3eu9_A           71 -LGGDLNSTPLHWATRQGHLSMVVQLMKYGA-DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-DVDMMDQNGMTPLM  147 (240)
T ss_dssp             -CBTTTTBCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             -hcCCcCCChhHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC-CccccCCCCCcHHH
Confidence             223458899999999999999999997754 578899999999999999999999999998755 45678999999999


Q ss_pred             HHHhcCC-HhHHHHHHhhCCCCcccccc-CCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCCh
Q 048248          228 LASQNGQ-LSILENLLHSYPDSIEFIDN-KNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHF  305 (316)
Q Consensus       228 ~A~~~g~-~~iv~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~  305 (316)
                      +|+..++ .+++++|++.+. .++..+. .|.||||+|+..|+.+++++|++.+.   .++.+|..|.||||+|++.++.
T Consensus       148 ~a~~~~~~~~~~~~L~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~  223 (240)
T 3eu9_A          148 WAAYRTHSVDPTRLLLTFNV-SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA---NVDAQNIKGESALDLAKQRKNV  223 (240)
T ss_dssp             HHHHHCCSSTTHHHHHHTTC-CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC---CTTCBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHhCChHHHHHHHHhcCC-CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCcH
Confidence            9997766 788898887654 4677776 89999999999999999999998863   3678899999999999999999


Q ss_pred             hHHHHHhhcC
Q 048248          306 NIILVLARNM  315 (316)
Q Consensus       306 ~~~~~Ll~~~  315 (316)
                      +++++|++.+
T Consensus       224 ~~v~~L~~~~  233 (240)
T 3eu9_A          224 WMINHLQEAR  233 (240)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.8e-37  Score=261.50  Aligned_cols=237  Identities=17%  Similarity=0.136  Sum_probs=188.2

Q ss_pred             HHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHH
Q 048248           11 ALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQI   90 (316)
Q Consensus        11 a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~   90 (316)
                      ++...+...+++++...  .++..+..|+||||+|+..|+.++|++|++.+++... .  +|+||||+|+..|+.+++++
T Consensus         6 ~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~--~g~t~L~~A~~~g~~~~v~~   80 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKI   80 (285)
T ss_dssp             TGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-C--TTCCHHHHHTTSSSCHHHHH
T ss_pred             HHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-C--CCCCHHHHHHHcCCHHHHHH
Confidence            45677888888888765  4788899999999999999999999999998876432 3  59999999999999999999


Q ss_pred             hhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCC-chHHHHHHHhCcHHH
Q 048248           91 FMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNN-LTLLHSAIIKSQFVV  169 (316)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~t~lh~A~~~~~~~~  169 (316)
                      |++.+.+          ++..|..|+||||+|+..++.++++.|+..++++.      ..+..| .||||+|+..|+.++
T Consensus        81 Ll~~ga~----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~~t~L~~A~~~~~~~~  144 (285)
T 3kea_A           81 LLFSGLD----------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM------FYGKTGWKTSFYHAVMLNDVSI  144 (285)
T ss_dssp             HHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG------GCSSSGGGSHHHHHHHTTCHHH
T ss_pred             HHHCCCC----------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC------ccCCCCCCCHHHHHHHcCCHHH
Confidence            9987544          33457888999999999999999999888876542      345566 689999998888888


Q ss_pred             HHHHHHhcccccccccc-CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcH-HHHHHhcCCHhHHHHHHhhCCC
Q 048248          170 MAKILEAKRDLINVRDE-RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSP-LHLASQNGQLSILENLLHSYPD  247 (316)
Q Consensus       170 ~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~iv~~Ll~~~~~  247 (316)
                      ++.|+..+...   .+. .|.||||+|+..|+.++++.|++.+ .+++.+|..|+|| ||+|+..|+.+++++|++.+. 
T Consensus       145 v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga-  219 (285)
T 3kea_A          145 VSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-  219 (285)
T ss_dssp             HHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB-
T ss_pred             HHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC-
Confidence            88888776532   233 7888999999888888888888764 4566788888887 889988888899988887754 


Q ss_pred             CccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          248 SIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       248 ~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      +++..|       +.|+..|+.+++++|++.+.
T Consensus       220 d~~~~~-------~~a~~~~~~~iv~~Ll~~g~  245 (285)
T 3kea_A          220 NIYSAN-------LENVLLDDAEIAKMIIEKHV  245 (285)
T ss_dssp             CSTTTT-------GGGGTTTCHHHHHHHHHHHH
T ss_pred             CCCCCC-------hhhhhcCCHHHHHHHHHcCC
Confidence            356665       35567888888888888763

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.3e-37  Score=263.96  Aligned_cols=233  Identities=14%  Similarity=0.088  Sum_probs=195.0

Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCCh
Q 048248           49 GHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG  128 (316)
Q Consensus        49 ~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~  128 (316)
                      .....+..+|..+.  ++..|.+|+||||+|+..|+.+++++|++.+.+.+          .  .+|+||||+|+..++.
T Consensus        10 ~~~~~v~~lL~~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~--~~g~t~L~~A~~~g~~   75 (285)
T 3kea_A           10 WKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN----------L--LENEFPLHQAATLEDT   75 (285)
T ss_dssp             CCHHHHHHHHHSTT--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS----------C--CTTCCHHHHHTTSSSC
T ss_pred             cCHHHHHHHHHhCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----------C--CCCCCHHHHHHHcCCH
Confidence            34444444554442  45678899999999999999999999998754422          2  2599999999999999


Q ss_pred             hHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCC-CcHHHHHHHhCcHHHHHHh
Q 048248          129 KMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN-RNPLRYAAALGHFKIACRL  207 (316)
Q Consensus       129 ~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~~~~l  207 (316)
                      ++++.|++.++++      +..+..|.||||+|+..|+.++++.|+..+. +++.+|..| .||||+|+..|+.++++.|
T Consensus        76 ~~v~~Ll~~ga~~------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~~t~L~~A~~~~~~~~v~~L  148 (285)
T 3kea_A           76 KIVKILLFSGLDD------SQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-RLMFYGKTGWKTSFYHAVMLNDVSIVSYF  148 (285)
T ss_dssp             HHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG-GGGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCC------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999988764      2356689999999999999999999998854 589999999 8999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcH-HHHHHHcCChhHHHHHhcCcccccccc
Q 048248          208 SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI-LHLAAQNGHADVVVFILKQPEVEDLIN  286 (316)
Q Consensus       208 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~~~~~Ll~~~~~~~~~~  286 (316)
                      +..+.....  ...|+||||+|+..|+.+++++|++.+. +++.+|..|+|| ||+|+..|+.+++++|++.+..   ++
T Consensus       149 l~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad---~~  222 (285)
T 3kea_A          149 LSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN---IY  222 (285)
T ss_dssp             HTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHH-HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC---ST
T ss_pred             HhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC---CC
Confidence            988765421  2389999999999999999999998854 478999999998 9999999999999999998653   45


Q ss_pred             cCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          287 SSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       287 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      ..|       +.|+..|+.+++++|++++
T Consensus       223 ~~~-------~~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          223 SAN-------LENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             TTT-------GGGGTTTCHHHHHHHHHHH
T ss_pred             CCC-------hhhhhcCCHHHHHHHHHcC
Confidence            554       3668899999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.5e-36  Score=249.41  Aligned_cols=214  Identities=20%  Similarity=0.270  Sum_probs=149.2

Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCCh
Q 048248           49 GHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG  128 (316)
Q Consensus        49 ~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~  128 (316)
                      |+.+++++|++.+.......|.+|+||||+|+..|+.+++++|++.+..          +...|..|+||||+|+..++.
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~   71 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD----------ANIQDNMGRTPLHAAVSADAQ   71 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHcCCH
Confidence            3445555555555554444455566666666666666666666654322          222455566666666666666


Q ss_pred             hHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhh
Q 048248          129 KMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLS  208 (316)
Q Consensus       129 ~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll  208 (316)
                      ++++.|+..++...     ...+..|.||||+|+..++.++++.|+..+. .++.+|..|.||||+|+..|+.++++.|+
T Consensus        72 ~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  145 (223)
T 2f8y_A           72 GVFQILIRNRATDL-----DARMHDGTTPLILAARLAVEGMLEDLINSHA-DVNAVDDLGKSALHWAAAVNNVDAAVVLL  145 (223)
T ss_dssp             HHHHHHHHBTTSCT-----TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCc-----ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC-CCcCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            66666666544221     2234467788888888888888888877554 47788888899999999888888888888


Q ss_pred             cCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          209 DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       209 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      +.+ .+++.+|..|.||||+|+..|+.+++++|++.+. +++.+|..|.||||+|+..|+.+++++|++.+.
T Consensus       146 ~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          146 KNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            774 4556778889999999999999999998888754 468888889999999999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.8e-35  Score=239.15  Aligned_cols=194  Identities=18%  Similarity=0.221  Sum_probs=176.3

Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHH
Q 048248          113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL  192 (316)
Q Consensus       113 ~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  192 (316)
                      ..+.||||.|+..++.+.++.++..++...     +..+..|.||||+|+..|+.++++.|++.+. +++.+|..|.|||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l   76 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQV-----DEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-DINLQNSISDSPY   76 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-----TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHH
Confidence            568899999999999999999998765332     3456689999999999999999999998764 5899999999999


Q ss_pred             HHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCC----
Q 048248          193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH----  268 (316)
Q Consensus       193 h~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~----  268 (316)
                      |+|+..|+.++++.|++..+.+++..|..|.||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..++    
T Consensus        77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL  156 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred             HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence            9999999999999999888888888999999999999999999999999999877789999999999999999998    


Q ss_pred             -hhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          269 -ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       269 -~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                       .+++++|++.+.   .++.+|..|+||||+|++.|+.+++++|++.|
T Consensus       157 ~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          157 YQDIVKLLMENGA---DQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCCC---CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence             899999999864   36788999999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-37  Score=270.94  Aligned_cols=257  Identities=16%  Similarity=0.094  Sum_probs=193.6

Q ss_pred             hcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCcccc------C------CC-CC---CcHH
Q 048248           13 RHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV------P------NH-KS---ETPM   76 (316)
Q Consensus        13 ~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~------~------~~-~g---~tpL   76 (316)
                      +....+.++.|+ ..|.+++..+..|.|+++     |+.++|++|++.+......      .      +. .+   .+.+
T Consensus        28 ~~~~~dlv~~ll-~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1sw6_A           28 ITFTHDLTSDFL-SSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ  101 (327)
T ss_dssp             EECCTTCCCSTT-TSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred             hhhcCchHHHHh-hCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence            344455564544 556788999999999987     8899999999877442110      0      00 11   2235


Q ss_pred             HHHHHhCChhHHHHhhccCCCCCCCCcchhhhhc-cCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCc
Q 048248           77 HVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRK-RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL  155 (316)
Q Consensus        77 h~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  155 (316)
                      |+|+..+..+++++|+..+.+          ++. +|..|+||||+|+..++.+++++|++.++++      +.++..|.
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~d----------vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~------n~~d~~g~  165 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLN----------LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR------LYGDNMGE  165 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCC----------SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TBCCTTCC
T ss_pred             HHHHHhhHHHHHHHHHhcCCC----------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCC
Confidence            788888888888888876544          334 6899999999999999999999999998765      34567899


Q ss_pred             hHHHHHHHhCc---HHHHHHHHHhccccccccccCCCcHHHHHHH----hCcHHHHHHhhcCC-----------------
Q 048248          156 TLLHSAIIKSQ---FVVMAKILEAKRDLINVRDERNRNPLRYAAA----LGHFKIACRLSDED-----------------  211 (316)
Q Consensus       156 t~lh~A~~~~~---~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~~~~ll~~~-----------------  211 (316)
                      ||||+|+..|+   .+.++.|+......++.+|..|+||||+|+.    .|+.++++.|++..                 
T Consensus       166 TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~  245 (327)
T 1sw6_A          166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN  245 (327)
T ss_dssp             CHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred             CHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence            99999999988   6777888877766789999999999999999    88999999998753                 


Q ss_pred             --CCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCC
Q 048248          212 --DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSD  289 (316)
Q Consensus       212 --~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d  289 (316)
                        +.+++.++..|+||||.|+.      +++|++.   .++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|
T Consensus       246 ~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga---d~~~~d  313 (327)
T 1sw6_A          246 EKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA---DPFIAN  313 (327)
T ss_dssp             --------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC---CTTCCC
T ss_pred             cccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCcccC
Confidence              66677889999999999985      8889987   378899999999999999999999999999864   478899


Q ss_pred             CCCCcHHHHHHHcC
Q 048248          290 VDGNTPLHLAAINN  303 (316)
Q Consensus       290 ~~g~t~L~~A~~~~  303 (316)
                      .+|+||||+|++.|
T Consensus       314 ~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          314 KSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTSCCGGGGTCC--
T ss_pred             CCCCCHHHHHHhcC
Confidence            99999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-36  Score=256.20  Aligned_cols=247  Identities=18%  Similarity=0.204  Sum_probs=198.8

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ..++|+.|+..|+.+.++.++..+ .+++..+..|.||||+|+..|+.++|++|++.+++. +..+..|+||||+|+..|
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHC-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcC
Confidence            357899999999999998888764 678889999999999999999999999999998774 567889999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII  163 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~  163 (316)
                      +.+++++|++.+..          +...+..|.||||+|+..+..+++..++...........     ..+.+++     
T Consensus       118 ~~~~v~~Ll~~g~~----------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~~-----  177 (299)
T 1s70_B          118 YLDIAEYLISQGAH----------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR-----KEEERIM-----  177 (299)
T ss_dssp             CHHHHHHHHHTTCC----------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHH-----HHHHHHH-----
T ss_pred             CHHHHHHHHhCCCC----------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhh-----hhhhhHH-----
Confidence            99999999987544          334688999999999999999999888875332211100     0111222     


Q ss_pred             hCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHh
Q 048248          164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLH  243 (316)
Q Consensus       164 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  243 (316)
                         ...+..++..+.......+..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++
T Consensus       178 ---~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  253 (299)
T 1s70_B          178 ---LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVE  253 (299)
T ss_dssp             ---HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ---HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH
Confidence               233456666665555667889999999999999999999999665 5567889999999999999999999999998


Q ss_pred             hCCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          244 SYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       244 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      .+ .+++.+|..|.||||+|++. ..+.+..+++.
T Consensus       254 ~g-ad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          254 NL-CDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             TT-CCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             cC-CCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            76 45799999999999999764 44555555543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.8e-36  Score=251.37  Aligned_cols=219  Identities=18%  Similarity=0.221  Sum_probs=120.2

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHhcCCC---ccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhc
Q 048248           34 TSQNGDTALHIAARFGHEILVMEILKHQSD---LVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRK  110 (316)
Q Consensus        34 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (316)
                      ++.+|+||||+|+..|+.+++++|++.+..   .++..+..|+||||+|+..|+.+++++|++.+..          +..
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------~~~   73 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD----------PEL   73 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC----------SCC
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCC
Confidence            456677777777777777777777765432   2445566677777777777777777777765433          223


Q ss_pred             cCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCc
Q 048248          111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN  190 (316)
Q Consensus       111 ~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~t  190 (316)
                      .|..|+||||+|+..++.++++.|+..+......                                  ..++..+..|.|
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------------------~~~~~~~~~g~t  119 (236)
T 1ikn_D           74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------------------------------SILKATNYNGHT  119 (236)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS----------------------------------CGGGCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH----------------------------------HHhhccCCCCCC
Confidence            4556666666666666666666666654332111                                  113444455555


Q ss_pred             HHHHHHHhCcHHHHHHhhcCCCCcccccCC-CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCCh
Q 048248          191 PLRYAAALGHFKIACRLSDEDDSLVYQHDC-NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA  269 (316)
Q Consensus       191 pLh~A~~~g~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  269 (316)
                      |||+|+..|+.++++.|++.+.. ++.++. .|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.
T Consensus       120 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~  197 (236)
T 1ikn_D          120 CLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPST  197 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCch
Confidence            55555555555555555544332 233443 5556666666656666666555543 23455555566666666666666


Q ss_pred             hHHHHHhcCcccccccccCCCCCCcHHHHH
Q 048248          270 DVVVFILKQPEVEDLINSSDVDGNTPLHLA  299 (316)
Q Consensus       270 ~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A  299 (316)
                      +++++|++.+... ....++..|.||.+.+
T Consensus       198 ~~~~~Ll~~ga~~-~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          198 RIQQQLGQLTLEN-LQMLPESEDEESYDTE  226 (236)
T ss_dssp             HHHHHHHTTSCGG-GSSCCCCCTTTCCCCC
T ss_pred             HHHHHHHHcchhh-hhcCCccchHHHHhhh
Confidence            6666665554421 2234455555554433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.2e-34  Score=239.48  Aligned_cols=194  Identities=20%  Similarity=0.225  Sum_probs=166.8

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHhh-CCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccc----cccccCC
Q 048248          114 EGNTPLHNAVRKCDGKMAFTMIKK-DPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLI----NVRDERN  188 (316)
Q Consensus       114 ~g~t~L~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~----~~~d~~g  188 (316)
                      .|.||||+|+..|+.++++.|+.. +.++      +..+..|.||||+|+..|+.++++.|++.+.+..    +.+|..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g   75 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV------HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG   75 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc------ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCC
Confidence            589999999999999999999987 4332      3456789999999999999999999998876432    5667899


Q ss_pred             CcHHHHHHHhCcHHHHHHhhcCCCCcccccCC-------------CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccC
Q 048248          189 RNPLRYAAALGHFKIACRLSDEDDSLVYQHDC-------------NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNK  255 (316)
Q Consensus       189 ~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  255 (316)
                      .||||+|+..|+.++++.|++.+.. ++.++.             .|.||||+|+..|+.+++++|++.+ .+++.+|..
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~  153 (232)
T 2rfa_A           76 QTALHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSL  153 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTT
T ss_pred             cCHHHHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCC
Confidence            9999999999999999999987654 344443             7999999999999999999999875 457999999


Q ss_pred             CCcHHHHHHHcCChhHH----HHHhcCccccc---ccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          256 NRNILHLAAQNGHADVV----VFILKQPEVED---LINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       256 g~tpLh~A~~~g~~~~~----~~Ll~~~~~~~---~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      |+||||+|+..|+.+++    ++|++.+....   ..+.+|..|+||||+|++.|+.+++++|++++
T Consensus       154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999988    89998875321   12578999999999999999999999999875

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.8e-34  Score=238.47  Aligned_cols=211  Identities=19%  Similarity=0.177  Sum_probs=157.9

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCC
Q 048248           37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGN  116 (316)
Q Consensus        37 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  116 (316)
                      .|+||||+|++.|+.++|++|++..+..++..|.+|+||||+|+..|+.+++++|++.+......     .....|..|.
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~~g~   76 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE-----PMTSELYEGQ   76 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-----CCCSTTTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc-----cccccCCCCc
Confidence            48899999999999999999998733345667888999999999999999999999865432110     1234567888


Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA  196 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  196 (316)
                      ||||+|+..++.++++.|++.+.++...      +.  .+.++                   ...+..|..|.||||+|+
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~------~~--~~~~~-------------------~~~~~~~~~g~t~L~~A~  129 (232)
T 2rfa_A           77 TALHIAVINQNVNLVRALLARGASVSAR------AT--GSVFH-------------------YRPHNLIYYGEHPLSFAA  129 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCC------CC--SGGGS-------------------CCTTCSCCCCSSHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcc------cC--Cccee-------------------ecccccccCCCCHHHHHH
Confidence            8999998888888888888887654321      11  11110                   113455678888888888


Q ss_pred             HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHH----HHHHhhCCCCc-----cccccCCCcHHHHHHHcC
Q 048248          197 ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL----ENLLHSYPDSI-----EFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       197 ~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~g  267 (316)
                      ..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++    ++|++.+....     +.+|..|+||||+|+..|
T Consensus       130 ~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          130 CVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             HHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence            888888888888664 45667788888888888888888877    88887665422     467888889999999888


Q ss_pred             ChhHHHHHhcCcc
Q 048248          268 HADVVVFILKQPE  280 (316)
Q Consensus       268 ~~~~~~~Ll~~~~  280 (316)
                      +.+++++|++.+.
T Consensus       209 ~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          209 NIVMFQHLMQKRK  221 (232)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCc
Confidence            8888888888764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.1e-36  Score=248.09  Aligned_cols=200  Identities=26%  Similarity=0.289  Sum_probs=169.5

Q ss_pred             ccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCC
Q 048248          110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNR  189 (316)
Q Consensus       110 ~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~  189 (316)
                      ..|.+|+||||+|+..|+.++++.|+..+....  .+.+..+..|.||||+|+..|+.++++.|+..+ ..++.+|..|.
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~   79 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL--AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGN   79 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----C--CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccH--HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCC
Confidence            358899999999999999999998888765321  123445678999999999999999999988765 45899999999


Q ss_pred             cHHHHHHHhCcHHHHHHhhcCCCC-----cccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCcccccc-CCCcHHHHH
Q 048248          190 NPLRYAAALGHFKIACRLSDEDDS-----LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDN-KNRNILHLA  263 (316)
Q Consensus       190 tpLh~A~~~g~~~~~~~ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~tpLh~A  263 (316)
                      ||||+|+..|+.++++.|+..+..     ..+..+..|+||||+|+..|+.+++++|++.+.. ++.++. .|+||||+|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLA  158 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHH
Confidence            999999999999999999987743     3466788999999999999999999999988654 688887 999999999


Q ss_pred             HHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          264 AQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       264 ~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      +..|+.+++++|++.+.   .++.+|..|+||||+|+..++.+++++|+++++
T Consensus       159 ~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCGA---DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HHTTCHHHHHHHHTTTC---CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHcCCHHHHHHHHHcCC---CCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            99999999999999864   467889999999999999999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.4e-34  Score=229.95  Aligned_cols=194  Identities=19%  Similarity=0.170  Sum_probs=172.6

Q ss_pred             CCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCccccccccc
Q 048248           70 HKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAK  149 (316)
Q Consensus        70 ~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  149 (316)
                      ..+.||||.|+..|+.+.++.++..+...         ++..|..|+||||+|+..++.++++.|++.+.++      +.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~   67 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQ---------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI------NL   67 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------TC
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCC---------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CC
Confidence            45889999999999999999988765421         4456889999999999999999999999987664      23


Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      .+..|.||||+|+..|+.++++.|+...+..++.+|..|.||||+|+..|+.++++.|++.+..+++.+|..|+||||+|
T Consensus        68 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  147 (201)
T 3hra_A           68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA  147 (201)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHH
Confidence            56678999999999999999999998877778999999999999999999999999999998778888999999999999


Q ss_pred             HhcCC-----HhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          230 SQNGQ-----LSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       230 ~~~g~-----~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      +..+.     .+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       148 ~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          148 VGLREGNQLYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHSSCCSHHHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHhccchhhHHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99998     99999999876 456899999999999999999999999999764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.1e-34  Score=240.02  Aligned_cols=198  Identities=19%  Similarity=0.199  Sum_probs=162.8

Q ss_pred             CCCcHHHHHHhcCChh----HHHHHHhhCCCcccccccccCCCCCchHHHHHHHh---CcHHHHHHHHHhcccccc----
Q 048248          114 EGNTPLHNAVRKCDGK----MAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK---SQFVVMAKILEAKRDLIN----  182 (316)
Q Consensus       114 ~g~t~L~~a~~~~~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~---~~~~~~~~ll~~~~~~~~----  182 (316)
                      .|+||||.|+..|+.+    ++++++..+.++....  ...+..|.||||+|+..   |+.++++.|+..+.+ ++    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~--~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~-~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA--YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD-SGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG--GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH-TTCSSC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCccccc--ccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc-ccchhh
Confidence            3789999999999997    5566666766542100  01466899999999999   999999999987653 23    


Q ss_pred             -------ccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCC-------------CCcHHHHHHhcCCHhHHHHHH
Q 048248          183 -------VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN-------------GQSPLHLASQNGQLSILENLL  242 (316)
Q Consensus       183 -------~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll  242 (316)
                             .+|..|.||||+|+..|+.++++.|++.+. +++.+|..             |.||||+|+..|+.+++++|+
T Consensus        78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  156 (256)
T 2etb_A           78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA-DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL  156 (256)
T ss_dssp             GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                   234779999999999999999999998754 45566665             999999999999999999999


Q ss_pred             hh--CCCCccccccCCCcHHHHHHH--cCChh-------HHHHHhcCccccc----ccccCCCCCCcHHHHHHHcCChhH
Q 048248          243 HS--YPDSIEFIDNKNRNILHLAAQ--NGHAD-------VVVFILKQPEVED----LINSSDVDGNTPLHLAAINNHFNI  307 (316)
Q Consensus       243 ~~--~~~~~~~~d~~g~tpLh~A~~--~g~~~-------~~~~Ll~~~~~~~----~~~~~d~~g~t~L~~A~~~~~~~~  307 (316)
                      +.  .+.+++.+|..|+||||+|+.  .++.+       ++++|++.+....    .++.+|..|+||||+|++.|+.++
T Consensus       157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  236 (256)
T 2etb_A          157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI  236 (256)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence            83  455679999999999999999  78888       9999998864320    017889999999999999999999


Q ss_pred             HHHHhhcC
Q 048248          308 ILVLARNM  315 (316)
Q Consensus       308 ~~~Ll~~~  315 (316)
                      +++|++++
T Consensus       237 v~~Ll~~g  244 (256)
T 2etb_A          237 FRHILQRE  244 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhCC
Confidence            99999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.4e-34  Score=245.10  Aligned_cols=207  Identities=19%  Similarity=0.220  Sum_probs=165.2

Q ss_pred             hccCCCCCcHHHHHHhcCChhHHHHHHhhCCCccc-ccc-cccCCCCCchHHHHHHHh---CcHHHHHHHHHhcccc---
Q 048248          109 RKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIR-YNN-KAKQGPNNLTLLHSAIIK---SQFVVMAKILEAKRDL---  180 (316)
Q Consensus       109 ~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~-~~~-~~~~~~~~~t~lh~A~~~---~~~~~~~~ll~~~~~~---  180 (316)
                      +..|..|.||||.|++.|+.++++.|+..+..... ... ....+..|.||||+|+..   |+.++++.|+..+.+.   
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            34688999999999999999999888874321110 000 012466899999999986   9999999999876431   


Q ss_pred             ---ccc----cccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCC--------------CCCcHHHHHHhcCCHhHHH
Q 048248          181 ---INV----RDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDC--------------NGQSPLHLASQNGQLSILE  239 (316)
Q Consensus       181 ---~~~----~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~iv~  239 (316)
                         ++.    .|..|.||||+|+..|+.++++.|++.+ .+++.++.              .|.||||+|+..|+.++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence               222    5678999999999999999999999875 44556665              7999999999999999999


Q ss_pred             HHHhh--CCCCccccccCCCcHHHHHHHcCC---------hhHHHHHhcCccccc----ccccCCCCCCcHHHHHHHcCC
Q 048248          240 NLLHS--YPDSIEFIDNKNRNILHLAAQNGH---------ADVVVFILKQPEVED----LINSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       240 ~Ll~~--~~~~~~~~d~~g~tpLh~A~~~g~---------~~~~~~Ll~~~~~~~----~~~~~d~~g~t~L~~A~~~~~  304 (316)
                      +|++.  .+.+++.+|..|+||||+|+..|+         .+++++|++.+....    .++.+|..|+||||+|++.|+
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            99983  456679999999999999999998         799999998764321    113589999999999999999


Q ss_pred             hhHHHHHhhcCC
Q 048248          305 FNIILVLARNMS  316 (316)
Q Consensus       305 ~~~~~~Ll~~~~  316 (316)
                      .+++++|+++++
T Consensus       246 ~~iv~~Ll~~ga  257 (273)
T 2pnn_A          246 IGVLAYILQREI  257 (273)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCC
Confidence            999999999763

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-33  Score=221.27  Aligned_cols=155  Identities=29%  Similarity=0.420  Sum_probs=135.1

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      ++|+.|+..|+.++|+.||+.+. ++|.+|.+|+||||+|+..++.++++.|+..+. +++.+|.+|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Ga-dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-d~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGA-DVNASDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-chhhhccCCCCHHHHHHHcCCH
Confidence            57999999999999999988764 589999999999999999999999988887654 5667899999999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      ++|++|++.+. +++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|.+|+||||+|++.|+.+++++|+++|
T Consensus        84 ~~v~~Ll~~ga-dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga---d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           84 EVVKLLISKGA-DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA---DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHCcC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            99999998754 578999999999999999999999999998864   36778999999999999999999999999987


Q ss_pred             C
Q 048248          316 S  316 (316)
Q Consensus       316 ~  316 (316)
                      +
T Consensus       160 A  160 (169)
T 4gpm_A          160 G  160 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3e-34  Score=243.15  Aligned_cols=221  Identities=15%  Similarity=0.160  Sum_probs=139.5

Q ss_pred             ccccccCCCChHHHHHHHhCCHHHHHHHHhc----CCCccc---cCCCCCCcHHHHHHHh---CChhHHHHhhccCCCCC
Q 048248           30 RILGTSQNGDTALHIAARFGHEILVMEILKH----QSDLVS---VPNHKSETPMHVAARA---GNFGAAQIFMRPHGNGN   99 (316)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~----~~~~~~---~~~~~g~tpLh~A~~~---g~~~~~~~l~~~~~~~~   99 (316)
                      ..+..+..|+||||+|++.|+.++|+.|++.    +.....   ..+..|+||||+|+..   |+.+++++|++.++...
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence            3456788999999999999999999988863    333211   3477899999999987   99999999998653211


Q ss_pred             CCCcchhhhh----ccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHH
Q 048248          100 NTGTFDDILR----KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILE  175 (316)
Q Consensus       100 ~~~~~~~~~~----~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~  175 (316)
                      .   ....++    ..|..|+||||+|+..++.++++.|++.++++...      +..++                  . 
T Consensus        85 ~---~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~------~~~~~------------------~-  136 (273)
T 2pnn_A           85 S---LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA------ANGDF------------------F-  136 (273)
T ss_dssp             C---HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC------BCSGG------------------G-
T ss_pred             c---hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc------ccccc------------------c-
Confidence            0   000111    13445666666666666666666666655443211      11000                  0 


Q ss_pred             hccccccccccCCCcHHHHHHHhCcHHHHHHhhcC--CCCcccccCCCCCcHHHHHHhcCC---------HhHHHHHHhh
Q 048248          176 AKRDLINVRDERNRNPLRYAAALGHFKIACRLSDE--DDSLVYQHDCNGQSPLHLASQNGQ---------LSILENLLHS  244 (316)
Q Consensus       176 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~--~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~  244 (316)
                       ........+..|.||||+|+..|+.++++.|++.  .+.+++.+|..|+||||+|+..|+         .+++++|++.
T Consensus       137 -~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~  215 (273)
T 2pnn_A          137 -KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL  215 (273)
T ss_dssp             -SSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             -ccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh
Confidence             0001122233777777777777777777777764  455566677777777777777776         6777777766


Q ss_pred             CCCCcc-------ccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          245 YPDSIE-------FIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       245 ~~~~~~-------~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      +.. ++       .+|..|+||||+|+..|+.+++++|++.+.
T Consensus       216 ga~-~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          216 GAK-LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHH-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhh-cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            432 32       467777788888888788888887777765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.7e-33  Score=236.23  Aligned_cols=201  Identities=17%  Similarity=0.181  Sum_probs=164.1

Q ss_pred             CCcHHHHHHHhCChh----HHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhc---CChhHHHHHHhhCCCcccc
Q 048248           72 SETPMHVAARAGNFG----AAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK---CDGKMAFTMIKKDPEPIRY  144 (316)
Q Consensus        72 g~tpLh~A~~~g~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~ll~~~~~~~~~  144 (316)
                      |+||||+|+..|+.+    ++++|+..+.+.+.      .....|..|+||||+|+..   ++.++++.|++.+......
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~------~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   75 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTD------SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP   75 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTS------GGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCS
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCccc------ccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccch
Confidence            788999999999987    44555555443221      0012688999999999999   9999999999987544211


Q ss_pred             c---c--cccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccC-------------CCcHHHHHHHhCcHHHHHH
Q 048248          145 N---N--KAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDER-------------NRNPLRYAAALGHFKIACR  206 (316)
Q Consensus       145 ~---~--~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~~~~  206 (316)
                      .   +  ....+..|.||||+|+..|+.++++.|+..+. +++.+|..             |.||||+|+..|+.++++.
T Consensus        76 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  154 (256)
T 2etb_A           76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA-DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY  154 (256)
T ss_dssp             SCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence            1   1  11234579999999999999999999998764 57888876             9999999999999999999


Q ss_pred             hhcC--CCCcccccCCCCCcHHHHHHh--cCCHh-------HHHHHHhhCCCCc-------cccccCCCcHHHHHHHcCC
Q 048248          207 LSDE--DDSLVYQHDCNGQSPLHLASQ--NGQLS-------ILENLLHSYPDSI-------EFIDNKNRNILHLAAQNGH  268 (316)
Q Consensus       207 ll~~--~~~~~~~~d~~g~tpLh~A~~--~g~~~-------iv~~Ll~~~~~~~-------~~~d~~g~tpLh~A~~~g~  268 (316)
                      |++.  .+.+++.+|..|+||||+|+.  .++.+       ++++|++.+. ++       +.+|..|+||||+|+..|+
T Consensus       155 Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA-RLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-HHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC-CcccccccccccCCCCCCHHHHHHHhCC
Confidence            9985  566778899999999999999  88888       9999998764 35       7899999999999999999


Q ss_pred             hhHHHHHhcCcc
Q 048248          269 ADVVVFILKQPE  280 (316)
Q Consensus       269 ~~~~~~Ll~~~~  280 (316)
                      .+++++|++.+.
T Consensus       234 ~~~v~~Ll~~g~  245 (256)
T 2etb_A          234 IEIFRHILQREF  245 (256)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC
Confidence            999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-34  Score=249.63  Aligned_cols=228  Identities=15%  Similarity=0.107  Sum_probs=166.2

Q ss_pred             cCChHHHHHHHHhcCCcccc-----------------ccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHH
Q 048248           14 HGYTDKVREFARLNGNRILG-----------------TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPM   76 (316)
Q Consensus        14 ~g~~~~~~~ll~~~~~~~~~-----------------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL   76 (316)
                      .|+.+.++.|+..+.. ++.                 ......+.+|+|+..+..+++++|++.+.+.....|.+|+|||
T Consensus        57 ~g~~~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpL  135 (327)
T 1sw6_A           57 NEQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL  135 (327)
T ss_dssp             HHHHHHHHHHHHHHHC--------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHH
T ss_pred             CchhHHHHHHHHhccC-CccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHH
Confidence            3889999888876522 121                 0111123357788777788888888888775433788999999


Q ss_pred             HHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCC---hhHHHHHHhhCCCcccccccccCCCC
Q 048248           77 HVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD---GKMAFTMIKKDPEPIRYNNKAKQGPN  153 (316)
Q Consensus        77 h~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~  153 (316)
                      |+|+..|+.+++++|++.+++          ++.+|..|+||||+|+..++   .+++..|+..+...     .+..+..
T Consensus       136 h~Aa~~g~~~~v~~Ll~~Gad----------~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~-----~~~~d~~  200 (327)
T 1sw6_A          136 HWLTSIANLELVKHLVKHGSN----------RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC-----LILEDSM  200 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----------TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG-----GGEECTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc-----ccCCCCC
Confidence            999999999999999997654          34568999999999999887   57777777765322     2345678


Q ss_pred             CchHHHHHHH----hCcHHHHHHHHHhc-------------------cccccccccCCCcHHHHHHHhCcHHHHHHhhcC
Q 048248          154 NLTLLHSAII----KSQFVVMAKILEAK-------------------RDLINVRDERNRNPLRYAAALGHFKIACRLSDE  210 (316)
Q Consensus       154 ~~t~lh~A~~----~~~~~~~~~ll~~~-------------------~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~  210 (316)
                      |.||||+|+.    .|+.++++.|++..                   +.+++.+|..|.||||+|+.      ++.|+..
T Consensus       201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~  274 (327)
T 1sw6_A          201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN  274 (327)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred             CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence            9999999999    89999999998763                   45688899999999999985      6677765


Q ss_pred             CCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       211 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                         +++.+|..|+||||+|+..|+.++|++|++.+ ++++.+|..|+||||+|++.|
T Consensus       275 ---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          275 ---MLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence               36778999999999999999999999999875 457999999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.6e-33  Score=235.61  Aligned_cols=201  Identities=16%  Similarity=0.127  Sum_probs=163.5

Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHh----hCCCcccccccccCCCCCchHHHHHH---HhCcHHHHHHHHHhccc-----
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIK----KDPEPIRYNNKAKQGPNNLTLLHSAI---IKSQFVVMAKILEAKRD-----  179 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~~~~~t~lh~A~---~~~~~~~~~~ll~~~~~-----  179 (316)
                      +..|+||||.|++.|+.+.++.|+.    .+.......  ...+..|.||||+|+   ..|+.++++.|+..+.+     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE--FREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG--GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh--hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            4578899999999999996555444    665543211  123457999999999   67999999999987532     


Q ss_pred             -----cccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccC--------------CCCCcHHHHHHhcCCHhHHHH
Q 048248          180 -----LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHD--------------CNGQSPLHLASQNGQLSILEN  240 (316)
Q Consensus       180 -----~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~  240 (316)
                           ..+..|..|+||||+|+..|+.++++.|++.+. +++.++              ..|+||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA-DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCC-CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                 234456689999999999999999999998754 455666              579999999999999999999


Q ss_pred             HHhh--CCCCccccccCCCcHHHHHHHcCC---------hhHHHHHhcCcccc----cccccCCCCCCcHHHHHHHcCCh
Q 048248          241 LLHS--YPDSIEFIDNKNRNILHLAAQNGH---------ADVVVFILKQPEVE----DLINSSDVDGNTPLHLAAINNHF  305 (316)
Q Consensus       241 Ll~~--~~~~~~~~d~~g~tpLh~A~~~g~---------~~~~~~Ll~~~~~~----~~~~~~d~~g~t~L~~A~~~~~~  305 (316)
                      |++.  .+.+++.+|..|+||||+|+..|+         .+++++|++.+...    ..++.+|..|+||||+|++.|+.
T Consensus       159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence            9983  355679999999999999999888         69999999876432    01167899999999999999999


Q ss_pred             hHHHHHhhcC
Q 048248          306 NIILVLARNM  315 (316)
Q Consensus       306 ~~~~~Ll~~~  315 (316)
                      +++++|++++
T Consensus       239 ~~v~~Ll~~g  248 (260)
T 3jxi_A          239 GIFQHIIRRE  248 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999999975

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.9e-32  Score=230.32  Aligned_cols=204  Identities=14%  Similarity=0.130  Sum_probs=162.4

Q ss_pred             CCCCcHHHHHHHhCChhHHHHhhc----cCCCCCCCCcchhhhhccCCCCCcHHHHHH---hcCChhHHHHHHhhCCCcc
Q 048248           70 HKSETPMHVAARAGNFGAAQIFMR----PHGNGNNTGTFDDILRKRDEEGNTPLHNAV---RKCDGKMAFTMIKKDPEPI  142 (316)
Q Consensus        70 ~~g~tpLh~A~~~g~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~---~~~~~~~~~~ll~~~~~~~  142 (316)
                      ..|+||||.|+..|+.+.++.+++    .+...+..      -...|..|+||||+|+   +.++.++++.|+..+....
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~   76 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE------EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG   76 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccccc
Confidence            457788888888888885544443    44332211      1124578999999999   6799999999999864321


Q ss_pred             cc-----cccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccc--------------cCCCcHHHHHHHhCcHHH
Q 048248          143 RY-----NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRD--------------ERNRNPLRYAAALGHFKI  203 (316)
Q Consensus       143 ~~-----~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~  203 (316)
                      ..     ......+..|.||||+|+..|+.++++.|++.+. +++.++              ..|.||||+|+..|+.++
T Consensus        77 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  155 (260)
T 3jxi_A           77 NMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA-DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI  155 (260)
T ss_dssp             CHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred             chHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCC-CcCccccccccCcccccccccCCCCHHHHHHHcCCHHH
Confidence            10     1112334478999999999999999999998764 578887              689999999999999999


Q ss_pred             HHHhhcC--CCCcccccCCCCCcHHHHHHhcCC---------HhHHHHHHhhCCCCc-------cccccCCCcHHHHHHH
Q 048248          204 ACRLSDE--DDSLVYQHDCNGQSPLHLASQNGQ---------LSILENLLHSYPDSI-------EFIDNKNRNILHLAAQ  265 (316)
Q Consensus       204 ~~~ll~~--~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~-------~~~d~~g~tpLh~A~~  265 (316)
                      ++.|++.  .+.+++.+|..|+||||+|+..|+         .+++++|++.+.. +       +.+|..|+||||+|+.
T Consensus       156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHH
Confidence            9999985  566778899999999999999888         7999999987633 3       6789999999999999


Q ss_pred             cCChhHHHHHhcCccc
Q 048248          266 NGHADVVVFILKQPEV  281 (316)
Q Consensus       266 ~g~~~~~~~Ll~~~~~  281 (316)
                      .|+.+++++|++.+..
T Consensus       235 ~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          235 TGKIGIFQHIIRREIA  250 (260)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhCCC
Confidence            9999999999988653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=1.8e-32  Score=232.55  Aligned_cols=194  Identities=19%  Similarity=0.249  Sum_probs=166.8

Q ss_pred             CCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHH
Q 048248          115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRY  194 (316)
Q Consensus       115 g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  194 (316)
                      +.+++|.|+..+..+.++.++....+.    ..+..+..|.||||+|+..|+.++++.|+..+...++..|..|.||||+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~----~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDY----VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHH----HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhh----cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence            456788888888888888887654321    1244677899999999999999999999998876789999999999999


Q ss_pred             HH-----HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCCh
Q 048248          195 AA-----ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA  269 (316)
Q Consensus       195 A~-----~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  269 (316)
                      |+     ..++.++++.|+..+. +....+..|+||||+|+..|+.++|++|++.+. +++.+|..|+||||+|+..|+.
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga-d~n~~d~~G~TpLh~A~~~g~~  229 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGN-INAKASQAGQTALMLAVSHGRVDVVKALLACEA-DVNVQDDDGSTALMCACEHGHK  229 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCH
Confidence            99     6678899999887764 445678899999999999999999999998754 5799999999999999999999


Q ss_pred             hHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       270 ~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      +++++|++..+  ..++.+|..|+||||+|+..|+.+++++|++++.
T Consensus       230 ~iv~~Ll~~~g--ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          230 EIAGLLLAVPS--CDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHTSTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHHHHhcCC--CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            99999998322  3467889999999999999999999999999863

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=3.5e-31  Score=207.65  Aligned_cols=156  Identities=24%  Similarity=0.338  Sum_probs=139.5

Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA  196 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  196 (316)
                      ++|+.|++.|+.++++.|++.++++      +.++..|.||||+|+..++.++++.|+..+. +++.+|.+|+||||+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv------n~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-d~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV------NASDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-chhhhccCCCCHHHHHH
Confidence            4799999999999999999998765      3457789999999999999999999998764 58999999999999999


Q ss_pred             HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          197 ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       197 ~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      ..|+.++++.|++.+ .+++.+|.+|+||||+|+..|+.++|++|++.+. +++.+|..|+||||+|+..|+.+++++|+
T Consensus        79 ~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           79 ENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999765 4567899999999999999999999999998764 57999999999999999999999999999


Q ss_pred             cCccc
Q 048248          277 KQPEV  281 (316)
Q Consensus       277 ~~~~~  281 (316)
                      +.|..
T Consensus       157 ~~GA~  161 (169)
T 4gpm_A          157 KQGGW  161 (169)
T ss_dssp             TC---
T ss_pred             HCCCC
Confidence            99864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.5e-31  Score=225.54  Aligned_cols=193  Identities=15%  Similarity=0.205  Sum_probs=167.6

Q ss_pred             CCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCC
Q 048248           72 SETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG  151 (316)
Q Consensus        72 g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  151 (316)
                      +++|+|.|+..++.+.++.++...        .+..++..|.+|+||||+|+..++.++++.|+..++...     +..+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~--------~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-----~~~~  142 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARL--------LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-----DKQN  142 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHH--------HHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-----TCCC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHH--------HhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-----CCCC
Confidence            567899999999999999887642        223466789999999999999999999999999986332     3456


Q ss_pred             CCCchHHHHHH-----HhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHH
Q 048248          152 PNNLTLLHSAI-----IKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPL  226 (316)
Q Consensus       152 ~~~~t~lh~A~-----~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpL  226 (316)
                      ..|.||||+|+     ..++.++++.|+..+. ..+..|..|+||||+|+..|+.++++.|++.+ .+++.+|..|+|||
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpL  220 (276)
T 4hbd_A          143 RAGYSPIMLTALATLKTQDDIETVLQLFRLGN-INAKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTAL  220 (276)
T ss_dssp             TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHH
Confidence            68999999999     6788999999888774 46788899999999999999999999999875 45678899999999


Q ss_pred             HHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       227 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      |+|+..|+.+++++|++..+.+++.+|..|+||||+|+..|+.+++++|++..
T Consensus       221 h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          221 MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99999999999999998556678999999999999999999999999999764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5.9e-31  Score=211.13  Aligned_cols=160  Identities=20%  Similarity=0.189  Sum_probs=135.5

Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      ++..|.||||+|+..|+.++++.|+..+. .++.+|..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccccccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHH
Confidence            45678889999998888888888887754 478888889999999999999999888887654 4567888899999999


Q ss_pred             HhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHH
Q 048248          230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL  309 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  309 (316)
                      +..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+.   .++.+|..|.||||+|+..|+.++++
T Consensus       109 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA---DISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            9999999999999775 4468889999999999999999999999998754   36778889999999999999999999


Q ss_pred             HHhhcC
Q 048248          310 VLARNM  315 (316)
Q Consensus       310 ~Ll~~~  315 (316)
                      +|++.+
T Consensus       185 ~Ll~~~  190 (192)
T 2rfm_A          185 IFTEVR  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.7e-30  Score=203.76  Aligned_cols=157  Identities=21%  Similarity=0.226  Sum_probs=136.7

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc
Q 048248          153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN  232 (316)
Q Consensus       153 ~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  232 (316)
                      .|.||||.|+..|+.++++.|+..+. .++.+|..|.||||+|+..|+.++++.|++.+ .+++..|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC-CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHc
Confidence            46799999999999999999998764 47888999999999999999999999998774 45567888999999999999


Q ss_pred             CCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHh
Q 048248          233 GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA  312 (316)
Q Consensus       233 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll  312 (316)
                      |+.+++++|++.+. +++..|..|.||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           80 GYTDIVKMLLDCGV-DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA---DPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             TCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            99999999998754 468889999999999999999999999998764   35678889999999999999999999998


Q ss_pred             hcC
Q 048248          313 RNM  315 (316)
Q Consensus       313 ~~~  315 (316)
                      +++
T Consensus       156 ~~~  158 (167)
T 3v31_A          156 SHL  158 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=8.6e-31  Score=204.25  Aligned_cols=157  Identities=25%  Similarity=0.309  Sum_probs=137.9

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcC
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG  233 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g  233 (316)
                      ..||||.|+..|+.++++.|++.+ ..++.+|..|+||||+|+. |+.++++.|++.+ .+++.+|..|+||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCC-CCccccCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence            458999999999999999998765 4578899999999999999 9999999999775 456678899999999999999


Q ss_pred             CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      +.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+..  .++.+|..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           82 FLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            999999999875 45788999999999999999999999999988653  257788999999999999999999999999


Q ss_pred             cCC
Q 048248          314 NMS  316 (316)
Q Consensus       314 ~~~  316 (316)
                      +++
T Consensus       159 ~GA  161 (162)
T 1ihb_A          159 NGA  161 (162)
T ss_dssp             TC-
T ss_pred             hCC
Confidence            874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2e-30  Score=204.26  Aligned_cols=154  Identities=23%  Similarity=0.244  Sum_probs=78.5

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      ||||.|+..|+.+.++.|+..++..++.+|..|+||||+|+..|+.++++.|++.+. +++..|..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA-DPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CchhhcccCCCHHHHHHHCCCH
Confidence            455555555555555555554444445555555555555555555555555554332 2334455555555555555555


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                      +++++|++.+. .++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|.||||+|++.++.+++++|+++
T Consensus        83 ~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           83 DIVGLLLERDV-DINIYDWNGGTPLLYAVRGNHVKCVEALLARGA---DLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             HHHHHHHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            55555554432 234555555555555555555555555555432   2344455555555555555555555555543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=2.4e-30  Score=200.48  Aligned_cols=155  Identities=24%  Similarity=0.321  Sum_probs=140.0

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcC
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG  233 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g  233 (316)
                      +.||||.|+..|+.+.++.|+...+..++..|..|.||||+ +..|+.++++.|++.+ .+++.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC
Confidence            45899999999999999999988555688999999999999 9999999999999775 456778999999999999999


Q ss_pred             CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      +.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++. .   .++.+|.+|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~---~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S---DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S---CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999876 45789999999999999999999999999987 2   367889999999999999999999999998


Q ss_pred             cC
Q 048248          314 NM  315 (316)
Q Consensus       314 ~~  315 (316)
                      ++
T Consensus       155 ~~  156 (156)
T 1bd8_A          155 HM  156 (156)
T ss_dssp             TC
T ss_pred             hC
Confidence            75

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=7.4e-30  Score=200.52  Aligned_cols=158  Identities=27%  Similarity=0.294  Sum_probs=140.9

Q ss_pred             CCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHh
Q 048248          152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ  231 (316)
Q Consensus       152 ~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  231 (316)
                      ..+.|||+.|+..|+.++++.|++.+. +++.+|..|.||||+|+..|+.++++.|++.+. +++..|..|.||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHH
Confidence            356799999999999999999998764 578899999999999999999999999997754 456789999999999999


Q ss_pred             cCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       232 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      .|+.+++++|++.+. .++.+|..|.||||+|+..|+.+++++|++.+.   .++.+|..|.||||+|++.++.+++++|
T Consensus        90 ~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA---DVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            999999999998754 468899999999999999999999999999864   3677899999999999999999999999


Q ss_pred             hhcC
Q 048248          312 ARNM  315 (316)
Q Consensus       312 l~~~  315 (316)
                      ++.|
T Consensus       166 ~~~G  169 (169)
T 2y1l_E          166 QKLN  169 (169)
T ss_dssp             HTC-
T ss_pred             HHcC
Confidence            9864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.6e-29  Score=202.70  Aligned_cols=163  Identities=20%  Similarity=0.210  Sum_probs=145.8

Q ss_pred             hhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccC
Q 048248          108 LRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDER  187 (316)
Q Consensus       108 ~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~  187 (316)
                      ++.+|..|+||||+|+..++.++++.|++.+..+      ...+..|.||||+|+..|+.++++.|+..+. .++.+|..
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~  100 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------EDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKDFS  100 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTT
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------ccccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCC
Confidence            4557899999999999999999999999987654      3356679999999999999999999998765 58899999


Q ss_pred             CCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcC
Q 048248          188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG  267 (316)
Q Consensus       188 g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  267 (316)
                      |.||||+|+..|+.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          101 GKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhC
Confidence            999999999999999999999765 456778999999999999999999999999875 457899999999999999999


Q ss_pred             ChhHHHHHhcCc
Q 048248          268 HADVVVFILKQP  279 (316)
Q Consensus       268 ~~~~~~~Ll~~~  279 (316)
                      +.+++++|++.+
T Consensus       179 ~~~~v~~Ll~~~  190 (192)
T 2rfm_A          179 RQEVIKIFTEVR  190 (192)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcc
Confidence            999999999754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=3e-30  Score=201.85  Aligned_cols=160  Identities=22%  Similarity=0.240  Sum_probs=137.2

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      +..+.||||.|+..|+.+.++.|+...+..++..+..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-DVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCC-CCCccCCCCCCHHHHHH
Confidence            34567999999999999999999887766677888889999999999999999999987754 45678889999999999


Q ss_pred             hcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHH
Q 048248          231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILV  310 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  310 (316)
                      ..|+.+++++|++.+. +++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|.+|+||||+|+. ++.+++++
T Consensus        84 ~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           84 SYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA---DPTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HcCcHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCcccCCCCCChhHhHhc-CChHHHHH
Confidence            9999999999998754 468899999999999999999999999998864   367889999999999777 89999999


Q ss_pred             HhhcCC
Q 048248          311 LARNMS  316 (316)
Q Consensus       311 Ll~~~~  316 (316)
                      |+++++
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            998874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=3.4e-32  Score=239.35  Aligned_cols=259  Identities=11%  Similarity=0.076  Sum_probs=157.3

Q ss_pred             CChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCcc--ccCCCCCCcHHHHHHHhCChhHHHHhh
Q 048248           15 GYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLV--SVPNHKSETPMHVAARAGNFGAAQIFM   92 (316)
Q Consensus        15 g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~tpLh~A~~~g~~~~~~~l~   92 (316)
                      ++.+.++.++..+        .+++||||+|++.|+.++|++|++.++...  ...+..|.||||+|+..|+.+++++|+
T Consensus        77 ~~~~~~~~l~~~g--------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll  148 (376)
T 2aja_A           77 NAKQLWSDAHKKG--------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC  148 (376)
T ss_dssp             TCTTHHHHHHHHT--------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcC--------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHH
Confidence            4555554444332        345699999999999999999998876221  123446788999999999999999999


Q ss_pred             ccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHH-HhCcHHHHH
Q 048248           93 RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAI-IKSQFVVMA  171 (316)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~-~~~~~~~~~  171 (316)
                      +.+++...     ..++  +.+ +||||+|+..|+.+++++|++.+++...    ...+..|.||||+|+ ..|+.++++
T Consensus       149 ~~gad~~~-----~~i~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~----~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          149 ELAPTEIM-----AMIQ--AEN-YHAFRLAAENGHLHVLNRLCELAPTEAT----AMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             HSCTTTHH-----HHHS--HHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             hCCCCccc-----cccC--CCC-CCHHHHHHHCCCHHHHHHHHHcCCccch----hccCCCCCCHHHHHHHHCCCHHHHH
Confidence            86532100     0111  222 8899999999999999999988765421    002335679999999 999999998


Q ss_pred             HHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHh---------------
Q 048248          172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLS---------------  236 (316)
Q Consensus       172 ~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~---------------  236 (316)
                      .|+..+.        .|.||||+|++.|+.++++.|+..+.. .+..+    ++++.|+..|+.+               
T Consensus       217 ~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~  283 (376)
T 2aja_A          217 FLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLR  283 (376)
T ss_dssp             HHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHH
T ss_pred             HHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHH
Confidence            8887431        278999999999998888888765433 22222    3455555555544               


Q ss_pred             ------------HHHHHHhhCCCC----ccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHH
Q 048248          237 ------------ILENLLHSYPDS----IEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA  300 (316)
Q Consensus       237 ------------iv~~Ll~~~~~~----~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  300 (316)
                                  .+++|++.....    .....+.+.||||+|+..|+.+++++|++.+..      ++..|+||+.+|.
T Consensus       284 ~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v------~~~~~~~~~~~~~  357 (376)
T 2aja_A          284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV------LALTKANNYYINE  357 (376)
T ss_dssp             HHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHH------HHSCC--------
T ss_pred             HHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHH------HHHHHHhcccccc
Confidence                        334444321100    011234567889999999999999999987643      3557899999999


Q ss_pred             HcCChhHHHHHh
Q 048248          301 INNHFNIILVLA  312 (316)
Q Consensus       301 ~~~~~~~~~~Ll  312 (316)
                      ..|+.+++++-+
T Consensus       358 ~~~~~~~~~~~~  369 (376)
T 2aja_A          358 TGGRLDLRAVAL  369 (376)
T ss_dssp             ------------
T ss_pred             ccccccHHHHHH
Confidence            999888877644

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=7.4e-30  Score=202.42  Aligned_cols=157  Identities=18%  Similarity=0.212  Sum_probs=96.2

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcC
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG  233 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g  233 (316)
                      +.++||.|+..|+.++++.|+...+..++.+|..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            4566666666666666666666555555666666666666666666666666666553 334455666666666666666


Q ss_pred             CHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      +.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+.   .++.+|..|.||||+|+..++.+++++|++
T Consensus        84 ~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           84 HRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA---LVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            666666666553 3346666666666666666666666666666543   245556666666666666666666666665


Q ss_pred             cC
Q 048248          314 NM  315 (316)
Q Consensus       314 ~~  315 (316)
                      .+
T Consensus       160 ~g  161 (179)
T 3f6q_A          160 MG  161 (179)
T ss_dssp             TT
T ss_pred             hh
Confidence            44

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=4.5e-29  Score=196.54  Aligned_cols=170  Identities=18%  Similarity=0.142  Sum_probs=142.5

Q ss_pred             CCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHH
Q 048248          115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRY  194 (316)
Q Consensus       115 g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  194 (316)
                      +.||||.|+..|+.++++.++..++...     +..+..|.||||+|+..|+.++++.|++.+. +++.+|..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLV-----NKPDERGFTPLIWASAFGEIETVRFLLEWGA-DPHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGG-----GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccc-----cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CchhhcccCCCHHHH
Confidence            4689999999999999999999876533     3356689999999999999999999998764 589999999999999


Q ss_pred             HHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHH
Q 048248          195 AAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF  274 (316)
Q Consensus       195 A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~  274 (316)
                      |+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++
T Consensus        76 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQV  153 (172)
T ss_dssp             HHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999999999765 456778999999999999999999999999876 4578999999999999999999999999


Q ss_pred             HhcCcccccccccCCCCCCcH
Q 048248          275 ILKQPEVEDLINSSDVDGNTP  295 (316)
Q Consensus       275 Ll~~~~~~~~~~~~d~~g~t~  295 (316)
                      |++.+..   +..++..|.||
T Consensus       154 L~~~~~~---~~~~~~~~~~p  171 (172)
T 3v30_A          154 IENHILK---LFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHH---HSCC-------
T ss_pred             HHHHHHH---HhcccCCCCCC
Confidence            9988643   45567777776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.6e-31  Score=235.09  Aligned_cols=245  Identities=17%  Similarity=0.098  Sum_probs=181.2

Q ss_pred             CChHHHHHHH-hCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCC
Q 048248           38 GDTALHIAAR-FGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGN  116 (316)
Q Consensus        38 g~t~Lh~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  116 (316)
                      +.+++++|.. .+..+++++++..+.        ++.||||+|+..|+.+++++|++.+.....       ....+..|.
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~--------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------~~~~~~~~~  129 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGI--------KSEVICFVAAITGCSSALDTLCLLLTSDEI-------VKVIQAENY  129 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTC--------CHHHHHHHHHHHCCHHHHHHHTTC--CCSS-------CC--CHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCC--------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHH-------HHHhccCCC
Confidence            5678888876 467888999887664        356999999999999999999987542211       112345678


Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccc--cccCCCcHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINV--RDERNRNPLRY  194 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~--~d~~g~tpLh~  194 (316)
                      ||||+|+..|+.+++++|++.+++.... +..  ..+ .||||+|+..|+.+++++|+..+.+ ++.  .|..|.||||+
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~-~i~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~  204 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMA-MIQ--AEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRW  204 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHH-HHS--HHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCcccc-ccC--CCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHH
Confidence            9999999999999999999998642110 011  112 7999999999999999999987654 555  88899999999


Q ss_pred             HH-HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChh---
Q 048248          195 AA-ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD---  270 (316)
Q Consensus       195 A~-~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~---  270 (316)
                      |+ ..|+.++++.|++.+ .       .|.||||+|+..|+.+++++|++.+.. ++..+    +++++|+..|+.+   
T Consensus       205 Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          205 AAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             HHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSS
T ss_pred             HHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhc
Confidence            99 999999999999743 2       378999999999999999999987532 33332    3555555555554   


Q ss_pred             ------------------------HHHHHhcCccccccc--ccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          271 ------------------------VVVFILKQPEVEDLI--NSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       271 ------------------------~~~~Ll~~~~~~~~~--~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                                              .+++|++.+.....+  ....+.+.||||+|++.|+.++|++|++.+
T Consensus       272 ~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             HHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh
Confidence                                    344445433222111  122356789999999999999999998753

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=7.7e-29  Score=191.44  Aligned_cols=150  Identities=21%  Similarity=0.228  Sum_probs=131.2

Q ss_pred             chHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC
Q 048248          155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ  234 (316)
Q Consensus       155 ~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~  234 (316)
                      .||||.|+..|+.++++.|+..+.. ++ .|..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCh
Confidence            4899999999999999999987653 33 58889999999999999999999987654 456788899999999999999


Q ss_pred             HhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          235 LSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       235 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      .+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA---DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999875 4468899999999999999999999999998864   3677889999999999999999999987

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=4.6e-29  Score=194.41  Aligned_cols=158  Identities=19%  Similarity=0.222  Sum_probs=141.3

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHH
Q 048248          114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR  193 (316)
Q Consensus       114 ~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  193 (316)
                      ...||||.|+..++.++++.|++.+.++      +..+..|.||||+|+. |+.++++.|+..+. +++.+|..|.||||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~   75 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV------NAQNGFGRTALQVMKL-GNPEIARRLLLRGA-NPDLKDRTGFAVIH   75 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT------TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc------cccCccCccHHHHHHc-CcHHHHHHHHHcCC-CCCCCCCCCCCHHH
Confidence            4568999999999999999999877654      3356689999999999 99999999998764 58899999999999


Q ss_pred             HHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHH
Q 048248          194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV  273 (316)
Q Consensus       194 ~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~  273 (316)
                      +|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..|+.++++
T Consensus        76 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           76 DAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             HHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            999999999999999765 5567789999999999999999999999999988767899999999999999999999999


Q ss_pred             HHhcCcc
Q 048248          274 FILKQPE  280 (316)
Q Consensus       274 ~Ll~~~~  280 (316)
                      +|++.|.
T Consensus       155 ~Ll~~GA  161 (162)
T 1ihb_A          155 LMQANGA  161 (162)
T ss_dssp             HHHHTC-
T ss_pred             HHHHhCC
Confidence            9998764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.5e-32  Score=222.35  Aligned_cols=189  Identities=15%  Similarity=0.164  Sum_probs=159.6

Q ss_pred             ccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCC
Q 048248          110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNR  189 (316)
Q Consensus       110 ~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~  189 (316)
                      ..+.+|.||||+|+..|+.++++.|+..+.++      +..+..|.||||+|+..|+.++++.|+..+ .+++.+|..|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~   88 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDP------SQPNEEGITALHNAICGANYSIVDFLITAG-ANVNSPDSHGW   88 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCC
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCC
Confidence            45778889999999999999999999987654      335678999999999999999999999875 45899999999


Q ss_pred             cHHHHHHHhCcHHHHHHhhcCCCCcccccC-CCCCcHHHHH--HhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHc
Q 048248          190 NPLRYAAALGHFKIACRLSDEDDSLVYQHD-CNGQSPLHLA--SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN  266 (316)
Q Consensus       190 tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  266 (316)
                      ||||+|+..|+.++++.|++.+... +.++ ..|+||||+|  +..|+.+++++|++.+. +++..|..|.||+|.++..
T Consensus        89 tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga-~~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A           89 TPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQ-SMGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH-HTTTSGGGEEEESSCBCCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC-CcccccCCchHHHHHHhhc
Confidence            9999999999999999999776554 4454 6999999999  99999999999998865 4688899999999966555


Q ss_pred             CChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          267 GHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       267 g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      +..   ++|++.+.. ..++.+|.+|+||||+|++.|+.++|+.+
T Consensus       167 ~~~---~~ll~~ga~-~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          167 FGD---ELSFREGES-VTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             STT---BCCBCTTCE-EEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             ccc---ccCcccccc-ccccccCCCcccHHHHHHHcCCcceeehh
Confidence            433   466666543 23678899999999999999999988754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=4.7e-28  Score=189.74  Aligned_cols=158  Identities=20%  Similarity=0.148  Sum_probs=141.1

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHH
Q 048248          114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR  193 (316)
Q Consensus       114 ~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  193 (316)
                      .|.||||.|+..|+.++++.|++.+...      +..+..|.||||+|+..|+.++++.|+..+ ..++.+|..|.||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHH
Confidence            5789999999999999999999987553      345668999999999999999999999875 458899999999999


Q ss_pred             HHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHH
Q 048248          194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVV  273 (316)
Q Consensus       194 ~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~  273 (316)
                      +|+..|+.++++.|++.+. +++.+|..|.||||+|+..|+.+++++|++.+. +++.+|..|+||||+|+..|+.++++
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGV-DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            9999999999999997654 456789999999999999999999999998754 56889999999999999999999999


Q ss_pred             HHhcCcc
Q 048248          274 FILKQPE  280 (316)
Q Consensus       274 ~Ll~~~~  280 (316)
                      +|++...
T Consensus       153 ~L~~~~~  159 (167)
T 3v31_A          153 VIESHLL  159 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=9e-31  Score=215.88  Aligned_cols=202  Identities=18%  Similarity=0.162  Sum_probs=147.2

Q ss_pred             HHHHHhcCCc--cccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCC
Q 048248           21 REFARLNGNR--ILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNG   98 (316)
Q Consensus        21 ~~ll~~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~   98 (316)
                      +.++..+...  .+..+..|.||||+|+..|+.++|++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.+.+ 
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-   79 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN-   79 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            4555554332  234566788999999999999999999998876 456788999999999999999999999987544 


Q ss_pred             CCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHH--HHhCcHHHHHHHHHh
Q 048248           99 NNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA--IIKSQFVVMAKILEA  176 (316)
Q Consensus        99 ~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A--~~~~~~~~~~~ll~~  176 (316)
                               ++..|..|+||||+|+..++.++++.|++.++++...     .+..|.||||+|  +..|+.++++.|+..
T Consensus        80 ---------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-----~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~  145 (229)
T 2vge_A           80 ---------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT-----TLSDGATAFEKCDPYREGYADCATYLADV  145 (229)
T ss_dssp             ---------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-----CSSTTCCTGGGCCTTSTTHHHHHHHHHHH
T ss_pred             ---------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-----cCCCCCCHHHHHHHHhcChHHHHHHHHHc
Confidence                     3446788999999999999999999999887665321     124788999998  888888888888877


Q ss_pred             ccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCc-ccccCCCCCcHHHHHHhcCCHhHHHHHH
Q 048248          177 KRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL-VYQHDCNGQSPLHLASQNGQLSILENLL  242 (316)
Q Consensus       177 ~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  242 (316)
                      +. +++.+|..|.||++.++....   .+.|+..+... ++.+|..|+||||+|+..|+.++|+.++
T Consensus       146 ga-~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          146 EQ-SMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             HH-HTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             CC-CcccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            64 478888888888886554332   23444443321 4567778888888888888888876533

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.1e-27  Score=188.12  Aligned_cols=159  Identities=24%  Similarity=0.351  Sum_probs=140.2

Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcH
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP  191 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  191 (316)
                      ...+.+||+.|++.|+.++++.|++.+.++      +..+..|.||||+|+..|+.++++.|++.+. .++.+|..|.||
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~   83 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV------NAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVDHAGMTP   83 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCCH
Confidence            456778999999999999999999987654      2356688999999999999999999998764 588999999999


Q ss_pred             HHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhH
Q 048248          192 LRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV  271 (316)
Q Consensus       192 Lh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  271 (316)
                      ||+|+..|+.++++.|++.+. +++.+|..|.||||+|+..|+.+++++|++.+. +++.+|..|.||||+|+..|+.++
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~  161 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISIDNGNEDL  161 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHhCCHHH
Confidence            999999999999999997654 456789999999999999999999999998764 468899999999999999999999


Q ss_pred             HHHHhcCc
Q 048248          272 VVFILKQP  279 (316)
Q Consensus       272 ~~~Ll~~~  279 (316)
                      +++|++.|
T Consensus       162 ~~~L~~~G  169 (169)
T 2y1l_E          162 AEILQKLN  169 (169)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHHcC
Confidence            99999763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.1e-27  Score=184.99  Aligned_cols=151  Identities=19%  Similarity=0.208  Sum_probs=135.1

Q ss_pred             CCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHH
Q 048248          115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRY  194 (316)
Q Consensus       115 g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  194 (316)
                      ..||||.|+..|+.++++.|++.+....       .+..|.||||+|+..|+.++++.|+..+. .++.+|..|+||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   73 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-------CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHH
Confidence            3589999999999999999999886542       35578999999999999999999997654 578999999999999


Q ss_pred             HHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHH
Q 048248          195 AAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF  274 (316)
Q Consensus       195 A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~  274 (316)
                      |+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++
T Consensus        74 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           74 AASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999764 556778999999999999999999999999875 4578999999999999999999999998


Q ss_pred             H
Q 048248          275 I  275 (316)
Q Consensus       275 L  275 (316)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            6

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=7.3e-28  Score=186.42  Aligned_cols=154  Identities=21%  Similarity=0.252  Sum_probs=136.3

Q ss_pred             CCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHH
Q 048248          115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRY  194 (316)
Q Consensus       115 g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  194 (316)
                      +.||||.|+..|+.++++.|+......     ....+..|.||||+ +..|+.++++.|++.+. +++.+|..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQV-MMFGSTAIALELLKQGA-SPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC-----TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC-----ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHH
Confidence            468999999999999999999872211     23456679999999 99999999999998764 589999999999999


Q ss_pred             HHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHH
Q 048248          195 AAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF  274 (316)
Q Consensus       195 A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~  274 (316)
                      |+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.  .+++.+|..|.||||+|+..|+.+++++
T Consensus        75 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~  151 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99999999999999866 55677899999999999999999999999987  5678999999999999999999999999


Q ss_pred             HhcC
Q 048248          275 ILKQ  278 (316)
Q Consensus       275 Ll~~  278 (316)
                      |+++
T Consensus       152 Ll~~  155 (156)
T 1bd8_A          152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9864

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=7.3e-28  Score=188.27  Aligned_cols=161  Identities=20%  Similarity=0.219  Sum_probs=138.5

Q ss_pred             cCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCc
Q 048248          111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN  190 (316)
Q Consensus       111 ~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~t  190 (316)
                      .+.+|.||||.|+..++.++++.|+...+..     ....+..|.||||+|+..|+.++++.|++.+. +++.+|..|+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-----CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-DVHAKDKGGLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-----CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-----ccccccCCCCHHHHHHHcChHHHHHHHHhcCC-CCCccCCCCCC
Confidence            3677899999999999999999999865432     23345578899999999999999999998764 58999999999


Q ss_pred             HHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChh
Q 048248          191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD  270 (316)
Q Consensus       191 pLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  270 (316)
                      |||+|+..|+.++++.|++.+. +++.+|..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+. |+.+
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHH
T ss_pred             HHHHHHHcCcHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChH
Confidence            9999999999999999997654 45678999999999999999999999999875 4578999999999999777 9999


Q ss_pred             HHHHHhcCcc
Q 048248          271 VVVFILKQPE  280 (316)
Q Consensus       271 ~~~~Ll~~~~  280 (316)
                      ++++|++.+.
T Consensus       155 i~~~L~~~gA  164 (165)
T 3twr_A          155 IQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHhhccc
Confidence            9999998753

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=6.2e-29  Score=206.37  Aligned_cols=182  Identities=17%  Similarity=0.173  Sum_probs=127.1

Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHH
Q 048248          113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL  192 (316)
Q Consensus       113 ~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  192 (316)
                      ..|.||||.|++.+..+.++.|+..+.++.       .++.+.||||.|+..|+.++++.|+..+. +++.+|..|.|||
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~-------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L   74 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK-------FNPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITAL   74 (239)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc-------cCchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHH
Confidence            468999999999999999999999887653       13467899999999999999999997765 5899999999999


Q ss_pred             HHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCC-cHHHHH--HHcCCh
Q 048248          193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR-NILHLA--AQNGHA  269 (316)
Q Consensus       193 h~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A--~~~g~~  269 (316)
                      |+|+..|+.++++.|+..+ .+++.+|..|+||||+|+..|+.+++++|++.+. +++.++..|. ||||+|  +..|+.
T Consensus        75 ~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           75 HNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             HHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CcceecCCCCcchHHHHHHhhhccH
Confidence            9999999999999999764 5567889999999999999999999999998765 4688887776 999999  788999


Q ss_pred             hHHHHHhcCccccccc------ccCCCCCCcHHHHHHHcCC
Q 048248          270 DVVVFILKQPEVEDLI------NSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       270 ~~~~~Ll~~~~~~~~~------~~~d~~g~t~L~~A~~~~~  304 (316)
                      +++++|++.+......      ...+..+.+|+++|...|.
T Consensus       153 ~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          153 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999999876433222      2337789999998888776

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.4e-27  Score=187.01  Aligned_cols=161  Identities=17%  Similarity=0.155  Sum_probs=140.7

Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHH
Q 048248          113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL  192 (316)
Q Consensus       113 ~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  192 (316)
                      .++.+|||.|+..++.++++.|+..++...     +..+..|.||||+|+..|+.++++.|+..+. +++.+|..|.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDL-----NQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCT-----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccc-----cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCcCCCCCCHH
Confidence            467899999999999999999999865432     3456689999999999999999999998764 5899999999999


Q ss_pred             HHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHH
Q 048248          193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV  272 (316)
Q Consensus       193 h~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~  272 (316)
                      |+|+..|+.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+. +++.+|..|.||||+|+..++.+++
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA-LVSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CcchhccCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999775 4567789999999999999999999999998764 5799999999999999999999999


Q ss_pred             HHHhcCccc
Q 048248          273 VFILKQPEV  281 (316)
Q Consensus       273 ~~Ll~~~~~  281 (316)
                      ++|++.+..
T Consensus       155 ~~L~~~g~~  163 (179)
T 3f6q_A          155 ERAEKMGQN  163 (179)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHhhcC
Confidence            999998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.3e-27  Score=179.48  Aligned_cols=132  Identities=21%  Similarity=0.224  Sum_probs=115.6

Q ss_pred             ccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccC-CC
Q 048248          179 DLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNK-NR  257 (316)
Q Consensus       179 ~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-g~  257 (316)
                      ..++..|..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+. |+.+++++|++.+.. ++.+|.. |+
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~   79 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLT   79 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            357888999999999999999999999999775 4566788999999999999 999999999987654 6888988 99


Q ss_pred             cHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          258 NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       258 tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      ||||+|+..|+.+++++|++.+.   .++.+|..|+||||+|++.++.+++++|+++++
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGA---RLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCC---CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999998764   367888999999999999999999999998764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1e-27  Score=198.98  Aligned_cols=156  Identities=15%  Similarity=0.066  Sum_probs=111.2

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc
Q 048248          153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN  232 (316)
Q Consensus       153 ~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  232 (316)
                      .|.||||.|+..++.+.++.|+..+.+ ++. +..|.||||+|+..|+.++++.|+..+. +++.+|..|+||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHc
Confidence            578999999999999999999987653 554 4789999999999999999999997766 6678899999999999999


Q ss_pred             CCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCC-cHHHHH--HHcCChhHHH
Q 048248          233 GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGN-TPLHLA--AINNHFNIIL  309 (316)
Q Consensus       233 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~-t~L~~A--~~~~~~~~~~  309 (316)
                      |+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+.   .++..|..|. ||||+|  +..|+.++++
T Consensus        81 g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           81 GHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA---AVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             TCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             CCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            9999999999885 4579999999999999999999999999999864   3567777776 999999  8899999999


Q ss_pred             HHhhcC
Q 048248          310 VLARNM  315 (316)
Q Consensus       310 ~Ll~~~  315 (316)
                      +|++.+
T Consensus       157 ~Ll~~~  162 (239)
T 1ycs_B          157 FLYGVQ  162 (239)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=8.7e-27  Score=185.58  Aligned_cols=153  Identities=11%  Similarity=0.041  Sum_probs=121.9

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccccc-cCCCcHHHHHHHhCcH----HHHHHhhcCCCCcccccCCCCCcHHHH
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRD-ERNRNPLRYAAALGHF----KIACRLSDEDDSLVYQHDCNGQSPLHL  228 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~~~~~ll~~~~~~~~~~d~~g~tpLh~  228 (316)
                      ++++|+.|+..|+.+.++.++...   ++.++ ..|+||||+|+..|+.    ++++.|++. +++++.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHH
Confidence            457899999999999888887654   34455 7799999999988864    477777765 45667788999999999


Q ss_pred             HHhcCC------HhHHHHHHhhCCCCccccccCCC-cHHHHHHHcCC-----hhHHHHHhc-CcccccccccCCCCCCcH
Q 048248          229 ASQNGQ------LSILENLLHSYPDSIEFIDNKNR-NILHLAAQNGH-----ADVVVFILK-QPEVEDLINSSDVDGNTP  295 (316)
Q Consensus       229 A~~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g~-----~~~~~~Ll~-~~~~~~~~~~~d~~g~t~  295 (316)
                      |+..|+      .+++++|++.+ ++++.+|..|+ ||||+|+..+.     .+++++|++ .+.   .++.+|..|+||
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga---d~~~~d~~G~Tp  157 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL---QLLIKDKWGLTA  157 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC---CTTCCCTTSCCH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC---CCcccCCCCCCH
Confidence            998887      57789888775 45788999999 99999998543     468888888 553   477889999999


Q ss_pred             HHHHHHcCChhHHHHHhhc
Q 048248          296 LHLAAINNHFNIILVLARN  314 (316)
Q Consensus       296 L~~A~~~~~~~~~~~Ll~~  314 (316)
                      ||+|++.++.+++++|.+.
T Consensus       158 L~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            9999999999999988753

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.1e-25  Score=174.20  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=110.6

Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCc-HHHH
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS-PLHL  228 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~t-pLh~  228 (316)
                      .+..|.||||+|+..|+.++++.|+..+ ..++.+|..|+||||+|+ .|+.++++.|++.+ .+++.+|..|+| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHH
Confidence            3456789999999999999999999775 458899999999999985 88999999999764 556778999999 9999


Q ss_pred             HHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHH
Q 048248          229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA  299 (316)
Q Consensus       229 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A  299 (316)
                      |+..|+.+++++|++.+. +++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|.||.+-+
T Consensus        85 A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGA-RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG---GTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTC-CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             HHHCCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC---CCCccCcCcCcccccC
Confidence            999999999999998854 578999999999999999999999999998864   3677888899987744

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.9e-25  Score=167.81  Aligned_cols=125  Identities=27%  Similarity=0.294  Sum_probs=77.6

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHH
Q 048248          186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       186 ~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  265 (316)
                      ..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHH
Confidence            34556666666666666666666543 234455666666666666666666666666553 3346666666666666666


Q ss_pred             cCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          266 NGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       266 ~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      .|+.+++++|++.+.   .++.+|..|+||||+|++.++.+++++|++.|
T Consensus        90 ~~~~~~v~~Ll~~g~---~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGA---DVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCC---CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            666666666666542   24556666777777777777777777766643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=8.4e-26  Score=179.86  Aligned_cols=156  Identities=6%  Similarity=-0.068  Sum_probs=130.0

Q ss_pred             CCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcH----HHHHHHHHhccccccccccCCCc
Q 048248          115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQF----VVMAKILEAKRDLINVRDERNRN  190 (316)
Q Consensus       115 g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~----~~~~~ll~~~~~~~~~~d~~g~t  190 (316)
                      +.++|+.|++.|+.+.+..++..+.....       +..|.||||+|+..++.    ++++.||..+ ++++.+|..|+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~-------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~T   77 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE-------SVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIKSRTKEGTT   77 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHH-------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSSCCCTTCCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccccc-------ccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCCCCCCCCCc
Confidence            56799999999999999999987643211       23588999999999875    4788888765 568999999999


Q ss_pred             HHHHHHHhCc------HHHHHHhhcCCCCcccccCCCCC-cHHHHHHhcC-----CHhHHHHHHhhCCCCccccccCCCc
Q 048248          191 PLRYAAALGH------FKIACRLSDEDDSLVYQHDCNGQ-SPLHLASQNG-----QLSILENLLHSYPDSIEFIDNKNRN  258 (316)
Q Consensus       191 pLh~A~~~g~------~~~~~~ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~~~~~~~~~~d~~g~t  258 (316)
                      |||+|+..++      .++++.|++. +++++.+|..|+ ||||+|+..+     +.+++++|++..+.+++.+|..|+|
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T  156 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT  156 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC
Confidence            9999999886      4678778765 556788999999 9999999954     4569999998345668999999999


Q ss_pred             HHHHHHHcCChhHHHHHhcCc
Q 048248          259 ILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       259 pLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      |||+|+..|+.+++++|.++.
T Consensus       157 pL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          157 ALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.4e-24  Score=161.37  Aligned_cols=125  Identities=38%  Similarity=0.603  Sum_probs=94.8

Q ss_pred             CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHc
Q 048248          187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN  266 (316)
Q Consensus       187 ~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  266 (316)
                      +|.||||+|+..|+.++++.|++.+. +++..|..|.||||+|+..|+.+++++|++.+. .++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC-CCcccCCCCCcHHHHHHHc
Confidence            47778888887777777777776543 345567778888888888888888888887643 3577778888888888888


Q ss_pred             CChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          267 GHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       267 g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      |+.+++++|++.+.   .++.+|..|+||||+|+..++.+++++|+++++
T Consensus        79 ~~~~~~~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            88888888887653   356677788888888888888888888887763

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=3.2e-25  Score=167.57  Aligned_cols=128  Identities=22%  Similarity=0.218  Sum_probs=112.3

Q ss_pred             ccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCC-CCcHH
Q 048248          148 AKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN-GQSPL  226 (316)
Q Consensus       148 ~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~-g~tpL  226 (316)
                      +..+..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+. |+.++++.|++.+. +++.+|.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA-EPNCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC-CSSCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC-CCCCcCCCCCCCHH
Confidence            445668899999999999999999999876 4588899999999999999 99999999997654 45678888 99999


Q ss_pred             HHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       227 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      |+|+..|+.+++++|++.+. +++.+|..|+||||+|+..|+.+++++|++.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGA-RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCC-CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999998764 46889999999999999999999999999765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.7e-25  Score=172.08  Aligned_cols=129  Identities=21%  Similarity=0.209  Sum_probs=113.2

Q ss_pred             cccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCc-HH
Q 048248          182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN-IL  260 (316)
Q Consensus       182 ~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pL  260 (316)
                      +..+..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+ .|+.+++++|++.+ ..++.+|..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHH
Confidence            456788999999999999999999999774 556778999999999985 89999999999875 457999999999 99


Q ss_pred             HHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          261 HLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       261 h~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      |+|+..|+.+++++|++.+.   .++.+|..|+||||+|+..|+.+++++|++++.
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga  135 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGA---RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG  135 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTC---CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-
T ss_pred             HHHHHCCCHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC
Confidence            99999999999999998753   477889999999999999999999999998763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.7e-24  Score=163.59  Aligned_cols=126  Identities=27%  Similarity=0.303  Sum_probs=111.6

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      ...+.||||+|+..|+.++++.|+..+. +++.+|..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence            3456799999999999999999998764 58899999999999999999999999999764 456678999999999999


Q ss_pred             hcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      ..|+.+++++|++.+. +++.+|..|+||||+|+..|+.+++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~g~-~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGA-DVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCC-CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999998754 46889999999999999999999999999753

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=8.9e-25  Score=173.74  Aligned_cols=139  Identities=22%  Similarity=0.263  Sum_probs=121.5

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccC-CCCCcHHHHHHh
Q 048248          153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHD-CNGQSPLHLASQ  231 (316)
Q Consensus       153 ~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~  231 (316)
                      .|.||||+|+..|+.++++.|+.  +.+++.+|..|+||||+|+..|+.++++.|++.+.. ++.+| ..|+||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHh
Confidence            56799999999999999999998  456899999999999999999999999999987654 45566 889999999999


Q ss_pred             cCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       232 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      .|+.+++++|++.+. +++.+|..|+||||+|+..++.                    ..+.+||++|+..|+.+++++|
T Consensus       120 ~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          120 YVRPEVVEALVELGA-DIEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             TTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCC-CCcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHHHHHHHH
Confidence            999999999998864 5789999999999999875321                    3478999999999999999999


Q ss_pred             hhcC
Q 048248          312 ARNM  315 (316)
Q Consensus       312 l~~~  315 (316)
                      .+++
T Consensus       179 ~~~~  182 (183)
T 3deo_A          179 EGQV  182 (183)
T ss_dssp             HTCC
T ss_pred             HHhh
Confidence            8764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=8.3e-25  Score=181.98  Aligned_cols=138  Identities=22%  Similarity=0.258  Sum_probs=114.0

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccC-CCCCcHHHHHHh
Q 048248          153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHD-CNGQSPLHLASQ  231 (316)
Q Consensus       153 ~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~  231 (316)
                      .|.||||+|+..|+.++++.|+.  +.+++.+|..|+||||+|+..|+.++++.|+..+.. ++.++ ..|+||||+|+.
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHH
Confidence            46789999999999999988887  446888899999999999999999999888877554 44455 789999999999


Q ss_pred             cCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       232 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      .|+.+++++|++.+ .+++.+|..|+||||+|+..++                    ...+.||||+|+..|+.+++++|
T Consensus       121 ~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~--------------------~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          121 YVRPEVVEALVELG-ADIEVEDERGLTALELAREILK--------------------TTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             TTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHT--------------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHh--------------------ccCCCCHHHHHHHcChHHHHHHH
Confidence            99999999999875 4568889999999999986321                    24578999999999999999999


Q ss_pred             hhc
Q 048248          312 ARN  314 (316)
Q Consensus       312 l~~  314 (316)
                      ++.
T Consensus       180 ~~~  182 (244)
T 3ui2_A          180 EGQ  182 (244)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=2.5e-25  Score=168.33  Aligned_cols=127  Identities=26%  Similarity=0.344  Sum_probs=86.5

Q ss_pred             ccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHH
Q 048248          183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHL  262 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  262 (316)
                      .+|.+|+||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+. .++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-cccCcCCCCCCHHHH
Confidence            45667777777777777777777777654 3445567777777777777777777777776543 356677777777777


Q ss_pred             HHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 048248          263 AAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN  314 (316)
Q Consensus       263 A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  314 (316)
                      |+..|+.+++++|++.+.   .++.+|..|.||||+|+..++.+++++|.++
T Consensus        83 A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGA---SRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTC---CTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            777777777777776643   3556677777777777777777777666554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.7e-23  Score=155.41  Aligned_cols=124  Identities=37%  Similarity=0.540  Sum_probs=106.6

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc
Q 048248          153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN  232 (316)
Q Consensus       153 ~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  232 (316)
                      +|.||||+|+..|+.++++.|+..+. .++.+|..|.||||+|+..++.++++.|++.+. +++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC-CCcccCCCCCcHHHHHHHc
Confidence            36799999999999999999888754 478888899999999999999999998887654 4566888999999999999


Q ss_pred             CCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCc
Q 048248          233 GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP  279 (316)
Q Consensus       233 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~  279 (316)
                      |+.+++++|++.+. .++.+|..|.||||+|+..|+.+++++|++.+
T Consensus        79 ~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           79 GHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            99999999998754 46888999999999999999999999999765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.2e-24  Score=176.82  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=98.6

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLAS  230 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  230 (316)
                      +..|.||||+|+..|+.++++.|+..+. +++.+|..|+||||+|+..|+.++++.|+...+.+++.+|..|+||||+|+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            4456788888888888888888887654 477888888888888888888888888887766677778888888888888


Q ss_pred             hcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCccccc
Q 048248          231 QNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED  283 (316)
Q Consensus       231 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~  283 (316)
                      ..|+.+++++|++.+. +++.+|..|+||||+|+..|+.++++.|+..+....
T Consensus       149 ~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGA-RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHTCHHHHHHHHHHTC-CSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HcCCHHHHHHHHHcCC-CCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            8888888888888754 467888888888888888888888888887765443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=179.90  Aligned_cols=140  Identities=14%  Similarity=0.163  Sum_probs=116.0

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccc------cccCCCcHHHHHHHh---CcHHHHHHhhcCCCCcccccCCCCCc
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINV------RDERNRNPLRYAAAL---GHFKIACRLSDEDDSLVYQHDCNGQS  224 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~~~~ll~~~~~~~~~~d~~g~t  224 (316)
                      ..++|+.|+..|+.+.++.|+..+.+ ++.      .+..|.||||+|+..   |+.++++.|+..+. +++.+|..|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-dvn~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-HLDAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS-CTTCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC-CCCCCCCCCCC
Confidence            45789999999999999999976654 565      688999999999997   88999999998754 56778999999


Q ss_pred             HHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCC
Q 048248          225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNH  304 (316)
Q Consensus       225 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  304 (316)
                      |||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+..         .|.||||+|+..|+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcCC
Confidence            999999999999999999875 45799999999999999999999999999987532         58999999999887


Q ss_pred             h
Q 048248          305 F  305 (316)
Q Consensus       305 ~  305 (316)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=9.3e-24  Score=173.03  Aligned_cols=129  Identities=21%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             ccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHH
Q 048248          183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHL  262 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  262 (316)
                      ..+..|.||||+|+..|+.++++.|+..+ .+++.+|..|+||||+|+..|+.++|++|++..+..++.+|..|+||||+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            34667888888888888888888888654 44566778888888888888888888888876556677888888888888


Q ss_pred             HHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          263 AAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       263 A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      |+..|+.+++++|++.+.   .++.+|..|+||||+|+..++.++++.|++.+
T Consensus       147 A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGA---RTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTC---CSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             HHHcCCHHHHHHHHHcCC---CCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            888888888888887753   35677888888888888888888888877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.3e-23  Score=155.78  Aligned_cols=111  Identities=24%  Similarity=0.252  Sum_probs=69.5

Q ss_pred             ccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHH
Q 048248          185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA  264 (316)
Q Consensus       185 d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  264 (316)
                      ++.|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence            3456666666666666666666665443 34456666677777777777777777666554 335666666777777777


Q ss_pred             HcCChhHHHHHhcCcccccccccCCCCCCcHHHHHH
Q 048248          265 QNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA  300 (316)
Q Consensus       265 ~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  300 (316)
                      ..|+.+++++|++.+.   .++.+|.+|+||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGA---DKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHhC
Confidence            7777777777776643   24556666777777763

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.1e-23  Score=159.18  Aligned_cols=126  Identities=25%  Similarity=0.299  Sum_probs=104.9

Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      .+..|.||||+|+..|+.++++.|+..+. +++.+|..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCGGGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-cccCcCCCCCCHHHHH
Confidence            45678899999999999999998887654 578889999999999999999999998887644 5567888999999999


Q ss_pred             HhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      +..|+.+++++|++.+ .+++.+|..|.||||+|+..+..+++.+|.+.
T Consensus        84 ~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            9999999999999775 45688999999999999988888887766644

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.2e-22  Score=172.02  Aligned_cols=193  Identities=16%  Similarity=0.156  Sum_probs=133.2

Q ss_pred             cCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCc
Q 048248          111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN  190 (316)
Q Consensus       111 ~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~t  190 (316)
                      .|..+.++++.+...|+.....++...-+....    ..+. .+....    ....+-..+++...........+....+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~----~kP~-~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~  132 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDP----VKPN-PGSDMI----ARKDYITAKYMERRYARKKHADTAAKLH  132 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSC----CSCC-TTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhc----CCCC-CCCCHH----HHHHHHHHHHHHhhcccccccccchhhh
Confidence            467788899999888887665554433222110    0000 011111    1111222223332222222333344567


Q ss_pred             HHHHHHHhCcHHHHHHhhcCCCCc-----ccccCCCCCcHHHHHHhc---CCHhHHHHHHhhCCCCccccccCCCcHHHH
Q 048248          191 PLRYAAALGHFKIACRLSDEDDSL-----VYQHDCNGQSPLHLASQN---GQLSILENLLHSYPDSIEFIDNKNRNILHL  262 (316)
Q Consensus       191 pLh~A~~~g~~~~~~~ll~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  262 (316)
                      +|+.|++.|+.+.+..++..+...     .+..|..|+||||+|+..   |+.+++++|++.+. +++.+|..|+||||+
T Consensus       133 ~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga-~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-NLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-CTTCCCTTCCCHHHH
T ss_pred             hhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC-CccccCCCCCCHHHH
Confidence            899999999988888888776553     233477899999999998   88999999998854 478889999999999


Q ss_pred             HHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          263 AAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       263 A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      |+..|+.+++++|++.+.   .++.+|.+|.||||+|+..|+.+++++|+++++
T Consensus       212 A~~~g~~~~v~~Ll~~ga---d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKA---SIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHcCC---CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999998764   467888999999999999999999999988653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.5e-23  Score=166.58  Aligned_cols=124  Identities=21%  Similarity=0.119  Sum_probs=108.3

Q ss_pred             cccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccc-cCCCcHHHH
Q 048248          184 RDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFID-NKNRNILHL  262 (316)
Q Consensus       184 ~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~  262 (316)
                      .+.+|.||||+|+..|+.++++.|+.  +.+++.+|..|+||||+|+..|+.+++++|++.+. +++.++ ..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCCCHHHH
Confidence            35689999999999999999999998  56778899999999999999999999999998764 467787 889999999


Q ss_pred             HHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          263 AAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       263 A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      |+..|+.+++++|++.+.   .++.+|.+|+||||+|++.++....+.+++
T Consensus       117 A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~  164 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGA---DIEVEDERGLTALELAREILKTTPKGNPMQ  164 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTC---CTTCCCTTSCCHHHHHHHHHHTCCCCSHHH
T ss_pred             HHhcCcHHHHHHHHHcCC---CCcCCCCCCCCHHHHHHHhccCcccccHHH
Confidence            999999999999998763   467889999999999999877665554443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=6.1e-23  Score=170.67  Aligned_cols=140  Identities=20%  Similarity=0.155  Sum_probs=120.4

Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccc-cCCCc
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRD-ERNRN  190 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d-~~g~t  190 (316)
                      +.+|.||||+|++.++.++++.|+. +.++      +..+..|.||||+|+..|+.++++.|+..+. +++.++ ..|.|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~g~t  113 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV------DAVDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCSSSCCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCcCCCCCCCC
Confidence            4678999999999999999999998 5433      3356689999999999999999999998764 578887 78999


Q ss_pred             HHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChh
Q 048248          191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD  270 (316)
Q Consensus       191 pLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  270 (316)
                      |||+|+..|+.++++.|+..+ .+++.+|..|+||||+|+..++                  ...+.||||+|+..|+.+
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~  174 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEK  174 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHH
Confidence            999999999999999999774 5567899999999999986221                  246899999999999999


Q ss_pred             HHHHHhcC
Q 048248          271 VVVFILKQ  278 (316)
Q Consensus       271 ~~~~Ll~~  278 (316)
                      ++++|++.
T Consensus       175 iv~~L~~~  182 (244)
T 3ui2_A          175 VINVLEGQ  182 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999974

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=9.2e-23  Score=174.63  Aligned_cols=146  Identities=14%  Similarity=0.076  Sum_probs=117.2

Q ss_pred             CCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh---CcHHHHHHHHHhccccccccccCCCcH
Q 048248          115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK---SQFVVMAKILEAKRDLINVRDERNRNP  191 (316)
Q Consensus       115 g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~---~~~~~~~~ll~~~~~~~~~~d~~g~tp  191 (316)
                      +.++|+.|+..++.+.+..++..+.++.........+..|.||||+|+..   ++.+++++||..+. +++.+|..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-dvn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-HLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS-CTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC-CCCCCCCCCCCH
Confidence            44679999999999999999998876533211112466889999999987   89999999998864 589999999999


Q ss_pred             HHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCCh
Q 048248          192 LRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA  269 (316)
Q Consensus       192 Lh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  269 (316)
                      ||+|+..|+.++++.|++. +++++.+|.+|.||||+|+..|+.+++++|++.+..       .|.||||+|+.+|+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            9999999999999999986 456678999999999999999999999999986532       689999999998874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=8.5e-23  Score=151.42  Aligned_cols=113  Identities=18%  Similarity=0.128  Sum_probs=98.4

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc
Q 048248          153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN  232 (316)
Q Consensus       153 ~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  232 (316)
                      .|.||||+|+..|+.++++.|+..+. .++.+|..|+||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHc
Confidence            56799999999999999999998765 58899999999999999999999999999765 45677899999999999999


Q ss_pred             CCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCC
Q 048248          233 GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH  268 (316)
Q Consensus       233 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  268 (316)
                      |+.+++++|++.+. +++.+|..|+||||+|...+.
T Consensus        84 ~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           84 GHVSCVKLLLSKGA-DKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHCCCHHH
T ss_pred             CCHHHHHHHHHcCC-CCCCcCCCCCCHHHHhCCHHH
Confidence            99999999998754 478999999999999954433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=9.7e-22  Score=138.20  Aligned_cols=92  Identities=41%  Similarity=0.681  Sum_probs=70.6

Q ss_pred             CCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHH
Q 048248          221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA  300 (316)
Q Consensus       221 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  300 (316)
                      +|+||||+|+..|+.+++++|++.+. +++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCccCCCCCCHHHHHH
Confidence            47788888888888888888887653 467788888888888888888888888887753   35677778888888888


Q ss_pred             HcCChhHHHHHhhcCC
Q 048248          301 INNHFNIILVLARNMS  316 (316)
Q Consensus       301 ~~~~~~~~~~Ll~~~~  316 (316)
                      +.|+.+++++|+++++
T Consensus        77 ~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HTTCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCC
Confidence            8888888888887763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.7e-21  Score=164.85  Aligned_cols=125  Identities=18%  Similarity=0.206  Sum_probs=109.5

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhcccc-----ccccccCCCcHHHHHHHh---CcHHHHHHhhcCCCCcccccCCCCCcH
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDL-----INVRDERNRNPLRYAAAL---GHFKIACRLSDEDDSLVYQHDCNGQSP  225 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~~~~~ll~~~~~~~~~~d~~g~tp  225 (316)
                      ..++|+.|+..|+.+.+..++..+.+.     ++..|..|+||||+|+..   |+.++++.|++.+ .+++.+|..|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCH
Confidence            357999999999999999988876542     344588999999999999   8899999999775 4567789999999


Q ss_pred             HHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          226 LHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       226 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      ||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999865 4579999999999999999999999999998764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=2.1e-21  Score=170.03  Aligned_cols=148  Identities=22%  Similarity=0.203  Sum_probs=110.4

Q ss_pred             CCchHHHHHHHh-CcHHHHHHHHHhccccccccc--cCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          153 NNLTLLHSAIIK-SQFVVMAKILEAKRDLINVRD--ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       153 ~~~t~lh~A~~~-~~~~~~~~ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      .+.|+||.|+.. ++.++++.||..+. +++..+  ..|.||||+|+..|+.++++.|+..+ .+++..|..|+||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGA-DVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTC-CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCC-CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence            456899999999 99999999997664 578887  88999999999999999999998774 55677899999999999


Q ss_pred             HhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcC
Q 048248          230 SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINN  303 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~  303 (316)
                      +..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|+..+.........+..+.|+++++....
T Consensus       276 ~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          276 TILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            9999999999999875 457899999999999999999999999999765433333345667888888876654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.84  E-value=8.9e-21  Score=173.53  Aligned_cols=123  Identities=13%  Similarity=0.168  Sum_probs=98.8

Q ss_pred             chHHHHHHHhCcHHHHHHHHHhcccccccc------ccCCCcHHHHHHH---hCcHHHHHHhhcCCCCcccccCCCCCcH
Q 048248          155 LTLLHSAIIKSQFVVMAKILEAKRDLINVR------DERNRNPLRYAAA---LGHFKIACRLSDEDDSLVYQHDCNGQSP  225 (316)
Q Consensus       155 ~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~~~~~ll~~~~~~~~~~d~~g~tp  225 (316)
                      .+.||.|+..|+.+.++.||..+. +++..      |..|+||||+|+.   .|+.++++.|+..+ ++++.+|..|+||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~-~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~Tp  210 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQ-DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA  210 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTC-CSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcc-cccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcH
Confidence            367888888888888888887764 35655      7788888888866   78888888888755 4566788888888


Q ss_pred             HHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          226 LHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       226 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      ||+|+..|+.++|++|++.+ ++++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            88888888888888888765 4468888888888888888888888888888764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.7e-20  Score=131.73  Aligned_cols=91  Identities=38%  Similarity=0.605  Sum_probs=68.2

Q ss_pred             CCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHc
Q 048248          187 RNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN  266 (316)
Q Consensus       187 ~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  266 (316)
                      +|+||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+. +++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHHc
Confidence            4778888888888888777777654 3456677788888888888888888888887654 4577788888888888888


Q ss_pred             CChhHHHHHhcCc
Q 048248          267 GHADVVVFILKQP  279 (316)
Q Consensus       267 g~~~~~~~Ll~~~  279 (316)
                      |+.+++++|++.+
T Consensus        79 ~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           79 GHLEVVKLLLEAG   91 (93)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcC
Confidence            8888888887665

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=1.3e-20  Score=164.97  Aligned_cols=128  Identities=20%  Similarity=0.214  Sum_probs=111.7

Q ss_pred             ccccCCCcHHHHHHHh-CcHHHHHHhhcCCCCcccccC--CCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcH
Q 048248          183 VRDERNRNPLRYAAAL-GHFKIACRLSDEDDSLVYQHD--CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI  259 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~-g~~~~~~~ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  259 (316)
                      ..+..+.||||+|+.. |+.++++.|+..+. +++..+  ..|.||||+|+..|+.+++++|++.+ .+++..|..|+||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~Tp  271 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGA-DVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGP  271 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTC-CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCC-CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCH
Confidence            3444567899999999 99999999997655 455666  78999999999999999999999875 5579999999999


Q ss_pred             HHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       260 Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      ||+|+..|+.+++++|++.+.   .++..|.+|.||||+|+..++.+++++|++.+
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Ga---d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGA---DLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHCcC---CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999864   46788999999999999999999999998653

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.83  E-value=2.3e-20  Score=170.83  Aligned_cols=124  Identities=18%  Similarity=0.215  Sum_probs=110.8

Q ss_pred             CCcHHHHHHHhCcHHHHHHhhcCCCCccccc------CCCCCcHHHHHHh---cCCHhHHHHHHhhCCCCccccccCCCc
Q 048248          188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQH------DCNGQSPLHLASQ---NGQLSILENLLHSYPDSIEFIDNKNRN  258 (316)
Q Consensus       188 g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t  258 (316)
                      ..+.||.|+..|+.+.++.|+..+.. ++..      |..|+||||+|+.   .|+.++|++|++.+. +++.+|..|+|
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga-~vn~~d~~g~T  209 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-HLDAKAADGNT  209 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC-CTTCCCSSSCC
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCC-CCCccCCCCCc
Confidence            34779999999999999999987754 4444      7889999999966   899999999999864 57999999999


Q ss_pred             HHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          259 ILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       259 pLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      |||+|+..|+.+++++|++.+.   .++.+|..|+||||+|+..|+.+++++|++.++
T Consensus       210 pLh~A~~~g~~~~v~~Ll~~ga---~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          210 ALHYAALYNQPDCLKLLLKGRA---LVGTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             HHHHHTTTTCHHHHHHHHHTCC---CCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999874   478889999999999999999999999999864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=3.9e-20  Score=135.23  Aligned_cols=108  Identities=25%  Similarity=0.345  Sum_probs=78.6

Q ss_pred             ccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHH
Q 048248          183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHL  262 (316)
Q Consensus       183 ~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  262 (316)
                      .+|.+|+||||+|+..|+.++++.|+..+. +++.+|..|+||||+|+..|+.+++++|++.+. .++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-DVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTC-CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC-CTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCcccCCCCCCHHHH
Confidence            457778888888888888887777776543 455677778888888888888888888877643 457777788888888


Q ss_pred             HHHcCChhHHHHHhcCcccccccccCCCCCCcH
Q 048248          263 AAQNGHADVVVFILKQPEVEDLINSSDVDGNTP  295 (316)
Q Consensus       263 A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~  295 (316)
                      |+..|+.+++++|++.+.   .++.++..|.||
T Consensus        82 A~~~~~~~~~~~Ll~~ga---~~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGA---DVNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSS---SHHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCC---CCCcCCcccccc
Confidence            888888888888887753   356667777776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=2.2e-19  Score=131.24  Aligned_cols=108  Identities=24%  Similarity=0.253  Sum_probs=92.1

Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHH
Q 048248          150 QGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLA  229 (316)
Q Consensus       150 ~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  229 (316)
                      ++..|.||||+|+..|+.++++.|+..+. .++.+|..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTC-CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHH
Confidence            46678999999999999999999887754 58889999999999999999999999998774 45667899999999999


Q ss_pred             HhcCCHhHHHHHHhhCCCCccccccCCCcHH
Q 048248          230 SQNGQLSILENLLHSYPDSIEFIDNKNRNIL  260 (316)
Q Consensus       230 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  260 (316)
                      +..|+.+++++|++.+ .+++.++..|.+|=
T Consensus        83 ~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            9999999999999775 55799999998873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=1.2e-18  Score=126.22  Aligned_cols=92  Identities=24%  Similarity=0.288  Sum_probs=69.0

Q ss_pred             cccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcH
Q 048248          216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTP  295 (316)
Q Consensus       216 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~  295 (316)
                      ...|.+|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+.   .++.+|..|+||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~tp   93 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA---DVXAQDKFGKTA   93 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CccccccCCCcH
Confidence            446777888888888888888888888764 4467778888888888888888888888887753   356677788888


Q ss_pred             HHHHHHcCChhHHHHH
Q 048248          296 LHLAAINNHFNIILVL  311 (316)
Q Consensus       296 L~~A~~~~~~~~~~~L  311 (316)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            8888888888888776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=4e-18  Score=123.46  Aligned_cols=92  Identities=25%  Similarity=0.328  Sum_probs=68.3

Q ss_pred             cccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHH
Q 048248          182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH  261 (316)
Q Consensus       182 ~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  261 (316)
                      ...|.+|.||||+|+..|+.++++.|+..+ .+++.+|..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHH
Confidence            445677888888888888888887777654 445667778888888888888888888888764 446778888888888


Q ss_pred             HHHHcCChhHHHHH
Q 048248          262 LAAQNGHADVVVFI  275 (316)
Q Consensus       262 ~A~~~g~~~~~~~L  275 (316)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.004
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 9e-26
 Identities = 76/302 (25%), Positives = 118/302 (39%), Gaps = 44/302 (14%)

Query: 40  TALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGN 99
           T LH+A+  GH  +V  +L+  +   +V N K ETP+H+AARAG+   A+  ++     N
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 100 NTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNK------------ 147
                      + ++  TPLH A R     M   +++ +  P                  
Sbjct: 61  ----------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 110

Query: 148 ---------------AKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL 192
                          A       T LH A    +  V   +LE      N   +    PL
Sbjct: 111 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPL 169

Query: 193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFI 252
             A    +  I   L     S  +    NG +PLH+A++  Q+ +  +LL     +    
Sbjct: 170 HVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE- 227

Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
             +    LHLAAQ GHA++V  +L +       N  +  G TPLHL A   H  +  VL 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQAN---GNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 313 RN 314
           ++
Sbjct: 285 KH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 2e-22
 Identities = 64/285 (22%), Positives = 116/285 (40%), Gaps = 23/285 (8%)

Query: 27  NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFG 86
                   ++ G T LH+AA++G   +   +L+  +   +       TP+HVA    N  
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLD 179

Query: 87  AAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNN 146
             ++ +   G+ +               G TPLH A ++   ++A ++++        + 
Sbjct: 180 IVKLLLPRGGSPH----------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 229

Query: 147 KAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACR 206
                   +T LH A  +     M  +L +K+   N+ ++    PL   A  GH  +   
Sbjct: 230 ------QGVTPLHLAA-QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV-AD 281

Query: 207 LSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN 266
           +  +   +V      G +PLH+AS  G + +++  L  +   +        + LH AAQ 
Sbjct: 282 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQ 340

Query: 267 GHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           GH D+V  +LK        N    DG TPL +A    + ++  VL
Sbjct: 341 GHTDIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 2e-20
 Identities = 58/290 (20%), Positives = 102/290 (35%), Gaps = 21/290 (7%)

Query: 5   DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
              L  A ++G                    +NG T LH+A    +  +V  +L      
Sbjct: 133 FTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS- 190

Query: 65  VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
              P     TP+H+AA+      A+  ++  G+ N              +G TPLH A +
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN----------AESVQGVTPLHLAAQ 240

Query: 125 KCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR 184
           +   +M   ++ K       N       + LT LH    +    V   +++     ++  
Sbjct: 241 EGHAEMVALLLSKQANGNLGNK------SGLTPLHLVAQEGHVPVADVLIKHGVM-VDAT 293

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
                 PL  A+  G+ K+  +   +  + V      G SPLH A+Q G   I+  LL  
Sbjct: 294 TRMGYTPLHVASHYGNIKL-VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT-LLLK 351

Query: 245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNT 294
              S   + +     L +A + G+  V   +    +    +  SD    +
Sbjct: 352 NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 8e-14
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
           PLH+AS  G L I++NLL          + K    LH+AA+ GH +V  ++L+    +  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQN---KAK 58

Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARNMS 316
           +N+   D  TPLH AA   H N++ +L  N +
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 1e-22
 Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 12/278 (4%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
             +  L  A +     LV ++L+  +++         TP+H A +       ++ +R   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
           +                   +     +    G                     +      
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK------ 117

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY 216
            + +     +      +    ++      +     L  AA  GH ++   L DE  + V 
Sbjct: 118 -VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 217 QHDCNGQSPLHLASQNGQLSILENL---LHSYPDSIEFIDNKNRNILHLAAQNGHADVVV 273
             D  G++ L  A  +   S +E +   L  +   +     + +  L LA +  H  +V 
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 274 FILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            +L+Q  +E  IN +D DG T L LA       I  +L
Sbjct: 237 RLLEQEHIE--INDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 3e-22
 Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 21/291 (7%)

Query: 5   DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
           +H L +A+++   D V++      N      + G T LH A +   E    +I++     
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE----DIVELLLRH 61

Query: 65  VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
            + P  + +        A   G+ ++       G +         + D  G T    A  
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-------NECDFYGFTAFMEAAV 114

Query: 125 KCDGKMAFTMIKKDPEP----IRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDL 180
               K    + K+            ++ +      T L  A  K    V+  +L+     
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSD---EDDSLVYQHDCNGQSPLHLASQNGQLSI 237
           +N  D   RN L +A           ++    +  + V      G++PL LA +   L +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 238 LENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ---PEVEDLI 285
           ++ LL      I   D+  +  L LA +     +   + K+    +  DL+
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.3 bits (223), Expect = 3e-21
 Identities = 37/311 (11%), Positives = 78/311 (25%), Gaps = 35/311 (11%)

Query: 5   DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILV--MEILKHQS 62
           + +  R L   Y       A+   +         +    +AA  G    +  + +L    
Sbjct: 57  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 116

Query: 63  DLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNA 122
           ++V V   ++     +AA  G+                             E       A
Sbjct: 117 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM--------AMIQAENYHAFRLA 168

Query: 123 VRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLIN 182
                  +   + +  P          Q  N      +A+ +    V+  +L+    L  
Sbjct: 169 AENGHLHVLNRLCELAPTE---ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML-- 223

Query: 183 VRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
                      +    G   +   ++   +               L++ +G   ++    
Sbjct: 224 ------AYAEIHEFEYGEKYVNPFIARHVN-----RLKEMHDAFKLSNPDGVFDLVTKSE 272

Query: 243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL--INSSDVDGNTPLHLAA 300
                            L         D + F+L  P ++ L    +   D N  L LA 
Sbjct: 273 CLQ-------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

Query: 301 INNHFNIILVL 311
              +     +L
Sbjct: 326 RLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 3e-12
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 16/170 (9%)

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
            L L+   + ++ F      + A    +     +    +         ++   L      
Sbjct: 15  QLRLIPWILWENLF---QHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAH 71

Query: 214 L----------VYQHDCNGQSPLHLASQNGQLSILE--NLLHSYPDSIEFIDNKNRNILH 261
                       ++     +    +A+  G  S L+   LL +  + ++ I  +N     
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 131

Query: 262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           LAA+NGH  V+  + +    E +      +      LAA N H +++  L
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAMIQA-ENYHAFRLAAENGHLHVLNRL 180

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.8 bits (149), Expect = 2e-11
 Identities = 27/260 (10%), Positives = 57/260 (21%), Gaps = 24/260 (9%)

Query: 8   LFRALRHGYTDKVREFARL--NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLV 65
            F A   G +  +     L  +   +         A  +AA  GH  ++  + +     +
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 153

Query: 66  SV-PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
                 ++     +AA  G+                          + E        AV 
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA-------MIQAENYYAFRWAAVG 206

Query: 125 KCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKIL---------E 175
           +    +   ++              +          A   ++   M             +
Sbjct: 207 RGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFD 266

Query: 176 AKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDCNGQSPLHLASQ 231
                  ++       L              L      +  +       +    L LA +
Sbjct: 267 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

Query: 232 NGQLSILENLLHSYPDSIEF 251
            G       LL S P  +  
Sbjct: 327 LGNQGACA-LLLSIPSVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 59.5 bits (143), Expect = 1e-10
 Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 10/140 (7%)

Query: 182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL 241
           N+ +  N   LR    +    +       ++  +          + L        + + L
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 242 LHSYPDS----------IEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
              Y                   K+  I  +AA  G +  +  +      ++++     +
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 292 GNTPLHLAAINNHFNIILVL 311
                 LAA N H +++  L
Sbjct: 126 NYQAFRLAAENGHLHVLNRL 145

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 84.8 bits (208), Expect = 1e-19
 Identities = 50/281 (17%), Positives = 109/281 (38%), Gaps = 12/281 (4%)

Query: 39  DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNG 98
           ++ + +         + E +  +S  +  P H   T +H  A   +   ++  +  H   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIV-HEAK 58

Query: 99  NNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGP------ 152
                  D+    D + NTPL  AV     ++   ++K   +P  YN   +         
Sbjct: 59  ECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 117

Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
            +  ++   +  ++     + L+       +    N    + A+A    +   ++  +  
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
           +        G++ LH A+Q   + I++ L+     + +  D   +  + LAAQ G  +VV
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 273 VFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
           +++++Q      + + D   +T   LA  NNH NI+ +  R
Sbjct: 238 MYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.8 bits (182), Expect = 4e-16
 Identities = 37/250 (14%), Positives = 83/250 (33%), Gaps = 11/250 (4%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSDL-------VSVPNHKSETPMHVAARAGNFGA 87
            ++  T LH  A         +++ H++         V+  +    TP+ +A  A     
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 88  AQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNK 147
               M+   +       +     +                 K+   + + D   +     
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 149

Query: 148 AKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL 207
                    +  + ++  +   +           +    + R  L YAA + +  I   L
Sbjct: 150 VAHNEGRDQVASAKLLVEKGAKVDYD---GAARKDSEKYKGRTALHYAAQVSNMPIVKYL 206

Query: 208 SDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG 267
             E  S   + D +G++P+ LA+Q G++ ++  L+      +E +D  +     LA  N 
Sbjct: 207 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANN 265

Query: 268 HADVVVFILK 277
           H ++V    +
Sbjct: 266 HHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A +      V+      G+      ++G T + +AA+ G   +VM +++  +  V  
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEA 249

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMR 93
            +    T   +A    +     IF R
Sbjct: 250 VDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 27  NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFG 86
              R       G TALH AA+  +  +V  ++  +       +   +TP+ +AA+ G   
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 87  AAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMA 131
                ++   +              D   +T    A       + 
Sbjct: 236 VVMYLIQQGASVE----------AVDATDHTARQLAQANNHHNIV 270

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
           + L  +   +  +   + +  V  +         T LH  A N+       L  + 
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNII---DPRHNRTVLHWIASNSSAEKSEDLIVHE 56

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 1e-16
 Identities = 56/260 (21%), Positives = 87/260 (33%), Gaps = 22/260 (8%)

Query: 35  SQNGDTALHIAARFGHEILVMEILKHQSD--LVSVPNHKSETPMHVAARAGNFGAAQIFM 92
           +++GDTALH+A    HE  +  +L   +    + + N   +T +H+AA  G     +   
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 93  RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNK----A 148
                                  +T LH A R      A  +++  P   R  +      
Sbjct: 66  AAGAGVLVAERGG----------HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

Query: 149 KQGPNNLTLLHSAIIKSQF---VVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIAC 205
            Q     T    A + SQ           E  R  +   +     PL  A      ++  
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 206 RLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ 265
            L D    L       G++PLHLA +    S+LE LL +  D         R  L  A  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALL 234

Query: 266 NGHADVVVFILKQ--PEVED 283
             +  +   +     PE ED
Sbjct: 235 RPNPILARLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 5e-11
 Identities = 42/237 (17%), Positives = 75/237 (31%), Gaps = 6/237 (2%)

Query: 8   LFRALRHGYTDKVREFARL--NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLV 65
           L  A+ H +   +            +   +  G TALH+AA  G    V ++    +  V
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-V 71

Query: 66  SVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
            V      T +H+A R      A + ++P  +     +   + + +D   +T    A   
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 126 CDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRD 185
                      +D +         +  +  T LH A+I     ++  + +A  DL     
Sbjct: 132 SQPNPENEEEPRDEDWRLQLE--AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
              R PL  A       +   L              G++PL  A       +   L 
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLR 245

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 8e-10
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 251 FIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN 306
           ++       LHLA  + H   + F+L      + ++  +  G T LHLAAI    +
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 6e-09
 Identities = 44/251 (17%), Positives = 71/251 (28%), Gaps = 53/251 (21%)

Query: 107 ILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQ 166
           +     E+G+T LH AV          ++         + +   G    T LH A I  +
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLG---QTALHLAAILGE 57

Query: 167 FVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL---------SDEDDSLVYQ 217
              + K+  A    + V +      L  A  +     AC L            D  L   
Sbjct: 58  ASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 218 HDCNGQSPLHLASQNGQLS---ILENLLHSYPDSIE------------------------ 250
            DC   +    A+ + Q +     E     +   +E                        
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176

Query: 251 ----------FIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
                           R  LHLA +   A V+  +LK         +    G TPL  A 
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSAL 233

Query: 301 INNHFNIILVL 311
           +  +  +  +L
Sbjct: 234 LRPNPILARLL 244

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (183), Expect = 1e-16
 Identities = 46/239 (19%), Positives = 83/239 (34%), Gaps = 17/239 (7%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDL---VSVPNHKSETPMHVAARAGNFGAAQIFMR 93
           +GDT LHIA   G+   V  ++         + + N+  +TP+H+A         ++ + 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 94  PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
              +                E  +P                ++                +
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN------------YD 109

Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
            LT LH A+       +  +LE   D+  V  +  R+PL +A       +  +L  +  +
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM-VQLLLQHGA 168

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
            V     +G S LH AS  G L ++  L+ S  D     +  N   L +A      D++
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 1e-14
 Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 13/236 (5%)

Query: 73  ETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAF 132
           +TP+H+A   GN  A    +     G         L   +    TPLH AV      +  
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRE------LDIYNNLRQTPLHLAVITT---LPS 54

Query: 133 TMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL 192
            +              + G     L       +    +          +  R+      L
Sbjct: 55  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 114

Query: 193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFI 252
             A      +    L +    +      +G+SPL  A +N  LS+++ LL  +  ++   
Sbjct: 115 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQ 173

Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII 308
                + LH A+  G   +V  +++        +  +   +TPL +A      +I+
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 17/234 (7%)

Query: 8   LFRALRHGYTDKVREFARL---NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
           L  A+  G    V     L    G  +   +    T LH+A       +V  ++   +  
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS- 65

Query: 65  VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
              P          A  A    +         +             R+ +G T LH AV 
Sbjct: 66  ---PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL---EARNYDGLTALHVAVN 119

Query: 125 KCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVR 184
               +    ++++  +    +       +  + L  A+  +   ++ ++L      +N +
Sbjct: 120 TECQETVQLLLERGADIDAVDI-----KSGRSPLIHAVENNSLSMV-QLLLQHGANVNAQ 173

Query: 185 DERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
                + L  A+  G   +   L           +C+  +PL +A     + IL
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 6   HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLV 65
             L  A+ +  +  + +    +G  +     +G +ALH A+  G   LV  +++  +D  
Sbjct: 146 SPLIHAVEN-NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-S 203

Query: 66  SVPNHKSETPMHVAARAGN 84
           S+ N  ++TP+ VA     
Sbjct: 204 SLKNCHNDTPLMVARSRRV 222

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (182), Expect = 6e-16
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 20/209 (9%)

Query: 106 DILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS 165
           ++    DE GNTPLH      + ++   ++K     +  +N  +   + L     ++   
Sbjct: 98  NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE---SCLVKAVKSVNNY 154

Query: 166 QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIAC------------RLSDEDDS 213
                  +L+     + + D  NR  L +                        +  + + 
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS--IEFIDNKNRNILHLAAQNGHADV 271
            +       +S  +  +   + SILENL   +  +  +   D+     L++AA+ G+  +
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAA 300
           V  +L           ++  G  P+   A
Sbjct: 275 VDALLDY---GADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.5 bits (158), Expect = 7e-13
 Identities = 35/231 (15%), Positives = 72/231 (31%), Gaps = 37/231 (16%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPH 95
           ++G+T LH      +  LV  ++KH S+     ++  E+ +  A ++ N   +  F    
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 96  GNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNL 155
                           D    T LH+ +            K   +               
Sbjct: 164 DYLYPCLI------LEDSMNRTILHHIIITSGMTGCSAAAKYYLD--------------- 202

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED--DS 213
                       ++M  I++ +   I        +            I   L  +    +
Sbjct: 203 ------------ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250

Query: 214 LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA 264
           ++   D NG + L++A++ G +SI++ LL    D     +      +   A
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 2/161 (1%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
             L   +      +   +     +  +     N+     +      ++     +   +L 
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA-DVVVF 274
              D +G +PLH  +    L ++++L+    +   + DN   + L  A ++ +  D   F
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
                 +   +   D    T LH   I +        A+  
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 200

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 25/169 (14%)

Query: 6   HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGH------------EIL 53
            K  +++ +  +             ++       T LH                   +IL
Sbjct: 145 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 204

Query: 54  VMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDE 113
           +  I+K Q+  +    ++ E+  +           +         N        L  +D 
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-------LNAQDS 257

Query: 114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAI 162
            G+T L+ A R  +  +   ++    +P   N       + L  +    
Sbjct: 258 NGDTCLNIAARLGNISIVDALLDYGADPFIANK------SGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 1e-15
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 22/240 (9%)

Query: 72  SETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMA 131
           S   +   A +G     +  +              +  + D++  T LH A      ++ 
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADK---------SLATRTDQDSRTALHWACSAGHTEIV 53

Query: 132 FTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP 191
             +++        ++      +         I    +            +N  ++    P
Sbjct: 54  EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-------GAQVNAVNQNGCTP 106

Query: 192 LRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEF 251
           L YAA+    +IA  L +   +     D    + +H A+  G L ++  L   Y  S   
Sbjct: 107 LHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNI 164

Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
            D +    LHLA      +    ++ Q      I   + +  TPL +A       I+  +
Sbjct: 165 QDTEGNTPLHLACDEERVEEAKLLVSQGA---SIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 8e-14
 Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 20/239 (8%)

Query: 39  DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNG 98
           +  +   A  G    + E +     L +  +  S T +H A  AG+    +  ++     
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 99  NNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLL 158
           N+                +PLH A      ++   ++ K  +    N       N  T L
Sbjct: 64  NDKDDAG----------WSPLHIAASAGRDEIVKALLGKGAQVNAVNQ------NGCTPL 107

Query: 159 HSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH 218
           H A  K++  +   +LE   +  + +D      +  AAA G+ K+   L     S     
Sbjct: 108 HYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQ 165

Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
           D  G +PLHLA    ++   + LL S   SI   + + +  L +A   G   ++  +++
Sbjct: 166 DTEGNTPLHLACDEERVEEAK-LLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 4e-12
 Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 20/235 (8%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           +      G  ++++E    + +    T Q+  TALH A   GH  +V  +L+    +   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
            +                                      +   ++ G TPLH A  K  
Sbjct: 67  DDAGWSPLHI-----------AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 115

Query: 128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDER 187
            ++A  +++    P   ++         T +H A  K   + M  IL   +   N++D  
Sbjct: 116 HEIAVMLLEGGANPDAKDH------YEATAMHRAAAK-GNLKMIHILLYYKASTNIQDTE 168

Query: 188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
              PL  A      + A  L  +  S +Y  +   ++PL +A + G   IL+ ++
Sbjct: 169 GNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 3e-10
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
            ++ +     +   + + + A + L    D+ +R  L +A + GH +I   L      + 
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
            + D     PLH+A+  G+  I++ LL      +  ++      LH AA     ++ V +
Sbjct: 65  DKDDAGWS-PLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 276 LKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
           L+        ++ D    T +H AA   +  +I +L    
Sbjct: 123 LEG---GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 159

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 2e-15
 Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 15/240 (6%)

Query: 39  DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNG 98
           +  LH A        V E+L  +  L+   +     P+H +            +      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMEN 59

Query: 99  NNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLL 158
            N   + D            + N                +    +               
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK---- 115

Query: 159 HSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH 218
                  ++  +++ L      + ++D+ N+ PL  AA++G  K+   L     S V   
Sbjct: 116 -------KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 168

Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
           D  G +PL  A   G       L+  Y    + +DNK      +A       V  F L  
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (170), Expect = 8e-15
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 14/236 (5%)

Query: 74  TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
            P+H A     F   Q  +    +            ++D++G  PLH +V     ++   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLL---------QKDQDGRIPLHWSVSFQAHEITSF 52

Query: 134 MIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR 193
           ++ K       +     G     +  S         +                     L 
Sbjct: 53  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 112

Query: 194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFID 253
                  +    +   E+ + V   D   Q PLH A+  G L ++E L      ++ + D
Sbjct: 113 VG---KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 169

Query: 254 NKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL 309
            +    L  A   GH D  V ++++   E   +  D  G     +A         L
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVALNEQVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 37/231 (16%), Positives = 68/231 (29%), Gaps = 12/231 (5%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L +A       KV+E      + +L   Q+G   LH +  F    +   +L    ++   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 68  PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
                                 +                       +G T LH AV K  
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK------ITNQGVTCLHLAVGKKW 117

Query: 128 GKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDER 187
            +++  +I+        +        N   LH A       ++  +    +  +N +D++
Sbjct: 118 FEVSQFLIENGASVRIKDK------FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 171

Query: 188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
              PL +A A GH   A  L ++  +     D  G     +A         
Sbjct: 172 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 9/198 (4%)

Query: 116 NTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILE 175
           N PLH A  + +      ++   P  +   ++     +    LH ++      + + +L 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ-----DGRIPLHWSVSFQAHEITSFLLS 55

Query: 176 AKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL 235
              ++       +     +  A     +    S  D  L    +      +         
Sbjct: 56  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 115

Query: 236 SILEN--LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGN 293
              E    L     S+   D  N+  LH AA  G   ++  +    +    +N  D  G 
Sbjct: 116 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQDKQGW 173

Query: 294 TPLHLAAINNHFNIILVL 311
           TPL  A    H +  ++L
Sbjct: 174 TPLFHALAEGHGDAAVLL 191

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.1 bits (170), Expect = 2e-14
 Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 13/252 (5%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +       A   G    V+ +L+  +D ++  N    T +H A    N    +  +    
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHN----------AVRKCDGKMAFTMIKKDPEPIRYNN 146
           N N       I                             +G     + +++       N
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 147 KAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACR 206
           +  +   ++        +       + L +         +     L  AAA G+ ++   
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 207 LSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN 266
           L  +    V   D +G +PLH A+  G+      L+ +  D +E ++   +    +A ++
Sbjct: 218 L-IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED 275

Query: 267 GHADVVVFILKQ 278
               +     KQ
Sbjct: 276 ILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 28/241 (11%)

Query: 74  TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
                A  +G+       +    + N            + +G T LH A    +  M   
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADIN----------YANVDGLTALHQACIDDNVDMVKF 91

Query: 134 MIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR 193
           +++      + +N+     +             ++ +A+ L ++   +   +     PL 
Sbjct: 92  LVENGANINQPDNEGWIPLHA-------AASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

Query: 194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFID 253
            A      ++     +     +       +  +   ++          L+S   +     
Sbjct: 145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--------LNSGHINDVRHA 196

Query: 254 NKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
                 LH+AA  G+ +V+  +++       +N  D DG TPLH AA         +L  
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARY---DVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 314 N 314
           N
Sbjct: 254 N 254

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 27  NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFG 86
                +  +++G TALH+AA  G+  ++  +++ + D V++ ++   TP+H AA  G   
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEE 246

Query: 87  AAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
           A +I +    +              ++ G T    A    
Sbjct: 247 ACRILVENLCDME----------AVNKVGQTAFDVADEDI 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 8   LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
           L  A   GYT+ ++   +   + +     +G T LH AA +G E     ++++  D +  
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEA 260

Query: 68  PNHKSETPMHVAAR 81
            N   +T   VA  
Sbjct: 261 VNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNI 307
           +   +  +   A  +G  + V+ +L++      IN ++VDG T LH A I+++ ++
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLER---GADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 22/198 (11%), Positives = 55/198 (27%), Gaps = 23/198 (11%)

Query: 140 EPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALG 199
            P+    K K   ++  +  +A        + ++LE   D IN  +      L  A    
Sbjct: 26  PPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDD 84

Query: 200 HFKIACRLSDEDDSLVYQHDCNGQSPLH---------------------LASQNGQLSIL 238
           +  +   L +   ++    +                               +  G   + 
Sbjct: 85  NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

Query: 239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ-PEVEDLINSSDVDGNTPLH 297
                +  + ++   N+    +  A +     ++    +               G T LH
Sbjct: 145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH 204

Query: 298 LAAINNHFNIILVLARNM 315
           +AA   +  ++ +L +  
Sbjct: 205 VAAAKGYTEVLKLLIQAR 222

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 4e-13
 Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 42/241 (17%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +GD+ LH+A     + L ME+++     ++  N                           
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN--------------------------- 33

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
                         ++    TPLH AV     ++A  ++    +P   + +     +   
Sbjct: 34  -------------FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL-A 79

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY 216
                +     +  +        ++   +      L  A+  G+  I   L      +  
Sbjct: 80  CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 139

Query: 217 QHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL 276
           Q  CNG++ LHLA       ++  LL    D +  +  +  +   L        +   + 
Sbjct: 140 QEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLG 198

Query: 277 K 277
           +
Sbjct: 199 Q 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.0 bits (141), Expect = 5e-11
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 53  LVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRD 112
           ++ ++L   ++L +  +   ET +H+AAR     AA+  +    + N+            
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAK 172
              +      +   +          D                +  L +A           
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-------- 115

Query: 173 ILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN 232
                   IN  D   +  L +AAA+ + +    L     +   Q D   ++PL LA++ 
Sbjct: 116 --------INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAARE 166

Query: 233 GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
           G     + LL ++ +  E  D+ +R    +A++  H D+V
Sbjct: 167 GSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIV 205

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.5 bits (124), Expect = 1e-08
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 11/206 (5%)

Query: 106 DILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKS 165
           ++    D+ G T LH A R      A  ++    +    +N  +   +         + +
Sbjct: 14  ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA-------AVAA 66

Query: 166 QFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSP 225
             + + +IL   R         +       AA    +         D+ +   D +G++ 
Sbjct: 67  DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTA 126

Query: 226 LHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLI 285
           LH A+       +  LL  + +  +  D+K+   L LAA+ G  +    +L         
Sbjct: 127 LHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDN---FANR 182

Query: 286 NSSDVDGNTPLHLAAINNHFNIILVL 311
             +D     P  +A+   H +I+ +L
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 32/193 (16%)

Query: 36  QNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPH 95
           + G+T+LH+AARF       + L       +  ++   TP+H A  A   G  QI +R  
Sbjct: 21  KTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 79

Query: 96  GNGNNTGTFDDI------------------------LRKRDEEGNTPLHNAVRKCDGKMA 131
               N    D                          +   D  G T LH A    + +  
Sbjct: 80  ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV 139

Query: 132 FTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP 191
             +       + + N+  Q   + T L  A  +  +     +L+   +   + D  +R P
Sbjct: 140 NIL------LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLP 192

Query: 192 LRYAAALGHFKIA 204
              A+   H  I 
Sbjct: 193 RDVASERLHHDIV 205

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 9e-07
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 7/154 (4%)

Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ 217
           L  A  +     + ++L  +    +  +   +  L+          A  L          
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM---MFGSTAIALELLKQGASPN 62

Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
                 +     +          +L  +   +   D      +HLA Q GH  VV F+  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
           + +    ++  D  G TPL LA      +++ +L
Sbjct: 123 ESD----LHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 19/172 (11%)

Query: 71  KSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKM 130
           ++   +  AA  G+    +  +       +           +  G T L   +       
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPD---------ALNRFGKTALQVMMFGSTAIA 51

Query: 131 AFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN 190
              + +     ++  +                 ++ F+   K+L      +NV D     
Sbjct: 52  LELLKQGASPNVQDTSGTSP--------VHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 103

Query: 191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL 242
           P+  A   GH  +   L+ E D  +++ D  G +PL LA Q G   +++ L 
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 22/167 (13%), Positives = 38/167 (22%), Gaps = 19/167 (11%)

Query: 38  GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
               L  AA  G    V  +L  +       N   +T + V        A ++  +    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 98  GNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTL 157
                +                             T+          N     G   + L
Sbjct: 62  NVQDTSGT--------------SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 107

Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
                  +    +A   +     ++ RD R   PL  A   G   + 
Sbjct: 108 AVQEGHTAVVSFLAAESD-----LHRRDARGLTPLELALQRGAQDLV 149

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (92), Expect = 8e-05
 Identities = 15/159 (9%), Positives = 35/159 (22%), Gaps = 10/159 (6%)

Query: 114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKI 173
           +    L  A R         ++                       H +  +         
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 174 LEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNG 233
               +                   +     A              D    + LH A+++ 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADV---------NAKDMLKMTALHWATEHN 111

Query: 234 QLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
              ++E L+    D +       +    ++  NG+ D+ 
Sbjct: 112 HQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLA 149

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 17/168 (10%), Positives = 42/168 (25%), Gaps = 19/168 (11%)

Query: 37  NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
           +    L  AAR G +  V  ++ + +   +     S   +       +     +      
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 97  NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
           +                     +               I +       +  AK       
Sbjct: 61  DART-----------------KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103

Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
           L  +     Q VV  ++L      ++ + +  +     +   G+  +A
Sbjct: 104 LHWATEHNHQEVV--ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 3/27 (11%), Positives = 12/27 (44%)

Query: 285 INSSDVDGNTPLHLAAINNHFNIILVL 311
           +++      T   ++  N + ++  +L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 19/166 (11%)

Query: 74  TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
             +  AARAG     +I M  +G               D  G +PLH A +         
Sbjct: 4   KKLLEAARAGQDDEVRILMA-NGAPFT----------TDWLGTSPLHLAAQYGHFSTTEV 52

Query: 134 MIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR 193
           +++            +   +       A I    +                 +  +    
Sbjct: 53  LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH--------GADVNAKDMLKMTAL 104

Query: 194 YAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
           + A   + +    L  +  + V+      ++   ++  NG   + E
Sbjct: 105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 219 DCNGQSPLHLASQNGQLSILE--NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL 276
               ++ LHLA ++   + L   + L     +++    K    LH      +A+ +  +L
Sbjct: 42  HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 101

Query: 277 KQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS 316
           +     ++ N     G TPL +A    H +   +L + +S
Sbjct: 102 RGKASIEIANE---SGETPLDIAKRLKHEHCEELLTQALS 138

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 6e-04
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 6/154 (3%)

Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ 217
           L SA  +     +  +L+   + +N ++   R  L+            R      +    
Sbjct: 5   LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK--LGNPEIARRLLLRGANPDL 61

Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
            D  G + +H A++ G L  L+ L   +   +   DN+    LHLAA+ GH  + V    
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTL-LEFQADVNIEDNEGNLPLHLAAKEGH--LRVVEFL 118

Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
                  +   +  G+T   LA +     ++ ++
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 20/168 (11%), Positives = 49/168 (29%), Gaps = 18/168 (10%)

Query: 40  TALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGN 99
             L  AA  G    +  +L++  +     N ++          G      + +       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN----VNAQNGF--------GRTALQVMKLGNPEIAR 50

Query: 100 NTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLH 159
                      +D  G   +H+A R        T+++   +    +N+           H
Sbjct: 51  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL------H 104

Query: 160 SAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL 207
            A  +    V+  +++     +  R+ +       A   G  ++   +
Sbjct: 105 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=314.53  Aligned_cols=299  Identities=25%  Similarity=0.331  Sum_probs=245.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF   85 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~   85 (316)
                      +|||.||..|+.+.|+.|+.. |.+++..+..|+||||+|+..|+.++|++|++.|+++ ...+.+|+||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCH
Confidence            599999999999999888876 5778999999999999999999999999999999874 56788999999999999999


Q ss_pred             hHHHHhhccCCCCCCCC-----------------------------------cc-----------hh----------hhh
Q 048248           86 GAAQIFMRPHGNGNNTG-----------------------------------TF-----------DD----------ILR  109 (316)
Q Consensus        86 ~~~~~l~~~~~~~~~~~-----------------------------------~~-----------~~----------~~~  109 (316)
                      +++++|+..........                                   +.           .+          .+.
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999886443211000                                   00           00          112


Q ss_pred             ccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccc---------------------------cccccCCCCCchHHHHHH
Q 048248          110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY---------------------------NNKAKQGPNNLTLLHSAI  162 (316)
Q Consensus       110 ~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~---------------------------~~~~~~~~~~~t~lh~A~  162 (316)
                      ..+.+|.+|||+|+..++.++++.|+..+.++...                           ......+..+.||+|+|+
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence            34668889999999999999999999887654211                           011123446778888888


Q ss_pred             HhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHH
Q 048248          163 IKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLL  242 (316)
Q Consensus       163 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  242 (316)
                      ..+..++++.++.... ..+..+..|.|||+.|++.++.++++.|++.+. +++..+..+.||||.|+..++.++++.++
T Consensus       240 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~-~~~~~~~~~~t~L~~~~~~~~~~~~~~ll  317 (408)
T d1n11a_         240 QEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLL  317 (408)
T ss_dssp             HTTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             HhCcHhHhhhhhcccc-ccccccCCCCChhhhhhhcCcHHHHHHHHHCCC-ccccccccccccchhhcccCcceeeeeec
Confidence            8888888887776543 467788899999999999999999999987554 45667888999999999999999999999


Q ss_pred             hhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHh
Q 048248          243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA  312 (316)
Q Consensus       243 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll  312 (316)
                      +.+ .+++.+|..|.||||+|+++|+.+++++|++.|.   .++.+|.+|+||||+|++.||.++|++|.
T Consensus       318 ~~g-~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA---d~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         318 QHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA---SPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            875 4579999999999999999999999999999874   37889999999999999999999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-38  Score=276.87  Aligned_cols=262  Identities=26%  Similarity=0.372  Sum_probs=176.4

Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcH
Q 048248           39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP  118 (316)
Q Consensus        39 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (316)
                      .||||+||..|+.++|++|++.|++ ++..|.+|+||||+|+..|+.+++++|++.+++          +..++.+|+||
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad----------i~~~~~~g~t~   69 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK----------VNAKAKDDQTP   69 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC----------SSCCCTTSCCH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC----------CCCCCCCCCCH
Confidence            4999999999999999999999876 466788999999999999999999999997654          33467888889


Q ss_pred             HHHHHhcCChhHHHHHHhhCCCccccc---------------------------ccccCCCCCchHHHHHHHhCcHHHHH
Q 048248          119 LHNAVRKCDGKMAFTMIKKDPEPIRYN---------------------------NKAKQGPNNLTLLHSAIIKSQFVVMA  171 (316)
Q Consensus       119 L~~a~~~~~~~~~~~ll~~~~~~~~~~---------------------------~~~~~~~~~~t~lh~A~~~~~~~~~~  171 (316)
                      ||+|+..++.++++.|+..........                           .....+..+.++++.|+..++.++++
T Consensus        70 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~  149 (408)
T d1n11a_          70 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  149 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHH
Confidence            998888888888888776543321100                           00111223344444444444444444


Q ss_pred             HHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCC---------------------------------------
Q 048248          172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD---------------------------------------  212 (316)
Q Consensus       172 ~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~---------------------------------------  212 (316)
                      .|+..+. .++..+.+|.+|||+|+..|+.++++.|+..+.                                       
T Consensus       150 ~ll~~~~-~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~  228 (408)
T d1n11a_         150 LLLERDA-HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES  228 (408)
T ss_dssp             HHHHTTC-CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCC-CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccC
Confidence            4443322 233444444444444444444444444433221                                       


Q ss_pred             --------------------------CcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHc
Q 048248          213 --------------------------SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQN  266 (316)
Q Consensus       213 --------------------------~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  266 (316)
                                                ...+..+..|.|||+.|+..++.+++++|++.+.. ++..+..+.||||.++..
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~  307 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHY  307 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHS
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhccc
Confidence                                      12223455566666666677777777777665433 466666677777777777


Q ss_pred             CChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          267 GHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       267 g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      ++.++++++++.+   ..++.+|.+|.||||+|++.|+.++|++|+++|+
T Consensus       308 ~~~~~~~~ll~~g---~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA  354 (408)
T d1n11a_         308 GNIKLVKFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA  354 (408)
T ss_dssp             SCSHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             Ccceeeeeecccc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            7777777777654   3478899999999999999999999999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-38  Score=265.04  Aligned_cols=244  Identities=20%  Similarity=0.215  Sum_probs=147.8

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHhcCCC--ccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhc
Q 048248           33 GTSQNGDTALHIAARFGHEILVMEILKHQSD--LVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRK  110 (316)
Q Consensus        33 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (316)
                      ..+.+|+||||+||+.|+.+++++|++.+++  .+...+..|.||||+|+..|+.+++++|++.+++          +..
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~----------i~~   73 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG----------VLV   73 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------SSC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc----------ccc
Confidence            4678999999999999999999999987654  3456778899999999999999999999987654          334


Q ss_pred             cCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCc
Q 048248          111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRN  190 (316)
Q Consensus       111 ~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~t  190 (316)
                      .|.+|.||||+|+..++.++++.++...........         .........-.                  ......
T Consensus        74 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~---------~~~~~~~~~~~------------------~~~~~~  126 (255)
T d1oy3d_          74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS---------DTYLTQSQDCT------------------PDTSHA  126 (255)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------------
T ss_pred             cccccchhhhhhhccCchHHHHHHHhhccchhcccc---------hhhhhHHhhhc------------------ccchHH
Confidence            688999999999999999999998876543211000         00000000000                  000000


Q ss_pred             HHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChh
Q 048248          191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD  270 (316)
Q Consensus       191 pLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  270 (316)
                      ++..............+........+.+|..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~  206 (255)
T d1oy3d_         127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS  206 (255)
T ss_dssp             -----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHH
Confidence            11111111111112222223333344556666666666666666666666666655443344556666666666666666


Q ss_pred             HHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 048248          271 VVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS  316 (316)
Q Consensus       271 ~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~~  316 (316)
                      ++++|++.+   ..++.+|..|.||||+|+..++.+++++|+++|+
T Consensus       207 ~v~~Ll~~g---adin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         207 VLELLLKAG---ADPTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHHHHHHTT---CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             HHHHHHHCC---CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            666666654   2355566666666666666666666666666653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.4e-38  Score=260.16  Aligned_cols=198  Identities=21%  Similarity=0.198  Sum_probs=102.1

Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcH
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNP  191 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  191 (316)
                      +++|+||||+|++.++.+++++|++.+++...   ...++..|.||||+|+..|+.++++.|+..+ .+++.+|.+|.||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~---i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~i~~~d~~g~tp   81 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTA   81 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG---GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc---ccCcCCCCCCccchHHhhccccccccccccc-ccccccccccchh
Confidence            34444444444444444444444443322111   1122334444555544444544444444433 2344445555555


Q ss_pred             HHHHHHhCcHHHHHHhhcCCCCc---------ccccCCCCC---cHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcH
Q 048248          192 LRYAAALGHFKIACRLSDEDDSL---------VYQHDCNGQ---SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI  259 (316)
Q Consensus       192 Lh~A~~~g~~~~~~~ll~~~~~~---------~~~~d~~g~---tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  259 (316)
                      ||+|+..++.++++.|+......         ....+..+.   .++..............+.......++.+|..|+||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            55555544444444444322110         001111111   222222222222233333333344567889999999


Q ss_pred             HHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       260 Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      ||+|+..|+.+++++|++.+...  ....+..|.||||+|++.|+.+++++|++++
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g  215 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADL--NKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccccccccccccchhcccccc--cccccccccccccccccccHHHHHHHHHHCC
Confidence            99999999999999999876532  3345678999999999999999999999976

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-37  Score=252.73  Aligned_cols=226  Identities=23%  Similarity=0.283  Sum_probs=151.0

Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcH
Q 048248           39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP  118 (316)
Q Consensus        39 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (316)
                      .||||+||..|+.++|+.|+...+..+...|.+|+||||+|+..|+.+++++|++.+++.+       .....+..|.+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~-------~~~~~~~~~~~~   73 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-------LDDYPDDSGWTP   73 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCC-------GGGCCCTTSCCH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccc-------cccccccccccc
Confidence            3688888888888888888776665666677778888888888888888888877654322       123346667777


Q ss_pred             HHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHh
Q 048248          119 LHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAAL  198 (316)
Q Consensus       119 L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  198 (316)
                      +|+++..+..++++.++..+....    ....+..+.||++.++..++.+++..|+..+. ..+.+|..|+||||+|+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~g~t~l~~a~~~  148 (229)
T d1ixva_          74 FHIACSVGNLEVVKSLYDRPLKPD----LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA-SVRIKDKFNQIPLHRAASV  148 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHSSSSCCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccccccccccccc----ccccccccccccccccccchhhhhhhhhhhcc-cccccCCCCCCccchhhhc
Confidence            777777776666666665543221    12234456677777777777777776666543 3556667777777777777


Q ss_pred             CcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          199 GHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       199 g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      |+.++++.|++.++.+++.+|.+|+||||+|+..|+.++|++|+++.+.+++.+|..|+||||+|+.   .+++++|++.
T Consensus       149 ~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~  225 (229)
T d1ixva_         149 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNN  225 (229)
T ss_dssp             TCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHc
Confidence            7777777777666566666677777777777777777777777765455566677777777777663   3566666654


Q ss_pred             c
Q 048248          279 P  279 (316)
Q Consensus       279 ~  279 (316)
                      |
T Consensus       226 g  226 (229)
T d1ixva_         226 V  226 (229)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=253.65  Aligned_cols=258  Identities=21%  Similarity=0.176  Sum_probs=124.2

Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcH
Q 048248           39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP  118 (316)
Q Consensus        39 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (316)
                      .|+||.|++.|+.++|++|++.|+++....+..|+||||+|+..|+.+++++|+..+...          ...+..+.+|
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~----------~~~~~~~~~~   75 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP----------VLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTCCCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc----------cccccccchh
Confidence            444555555555555555554444432222333445555555555555555444432211          1123344444


Q ss_pred             HHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccc---------cccccccCCC
Q 048248          119 LHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRD---------LINVRDERNR  189 (316)
Q Consensus       119 L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~---------~~~~~d~~g~  189 (316)
                      .+++...+..+.....+.......      ..+..+.|+++.|+..++...+..++.....         .....+..|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  149 (285)
T d1wdya_          76 FLLAAIAGSVKLLKLFLSKGADVN------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA  149 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred             hHHHhhcCCccccchhhhhccccc------ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCc
Confidence            444444444444444444322211      1122344455555555544444444432211         0112233456


Q ss_pred             cHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhc----CCHhHHHHHHhhCCCCccccccCCCcHHHHHHH
Q 048248          190 NPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQN----GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       190 tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  265 (316)
                      ||||+|+..|+.++++.|+...+.+++..+..|.++++.+...    +..+++++|++.+. +++.++..|.||||+|+.
T Consensus       150 t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga-~~n~~~~~g~t~L~~a~~  228 (285)
T d1wdya_         150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCC-CCCccCCCCCCccchhhh
Confidence            6666666666666666665555555555555555555544332    22345555555433 345556666666666666


Q ss_pred             cCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          266 NGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       266 ~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      .|+.+++++|++..+  ..++.+|.+|.||||+|++.|+.+++++|+++|
T Consensus       229 ~~~~~~v~~lL~~~g--~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         229 KKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             TTCHHHHHHHHHSSS--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcHHHHHHHHHcCC--CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            666666666665322  224555666666666666666666666666655

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=246.83  Aligned_cols=219  Identities=21%  Similarity=0.262  Sum_probs=138.5

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      +..++.+|..|+.+.+++++...+..++.+|..|+||||+|+..|+.+++++++........ .+..+.++++.++..++
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc-ccccccccccccccccc
Confidence            44677777888888887777777777777777888888888888888888877776655433 34456777777777777


Q ss_pred             hhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh
Q 048248           85 FGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK  164 (316)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~  164 (316)
                      .+++++|++.+.+          ++..|..                                       |.||||+|+..
T Consensus        83 ~~i~~~Ll~~~~d----------~~~~d~~---------------------------------------g~tpL~~A~~~  113 (223)
T d1uoha_          83 DEIVKALLGKGAQ----------VNAVNQN---------------------------------------GCTPLHYAASK  113 (223)
T ss_dssp             HHHHHHHHHTTCC----------TTCCCTT---------------------------------------CCCHHHHHHHH
T ss_pred             cchhHHHhccCce----------eEeeCCC---------------------------------------CCchhhHHHHc
Confidence            7777777754321          1223444                                       44555555555


Q ss_pred             CcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhh
Q 048248          165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS  244 (316)
Q Consensus       165 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  244 (316)
                      |+.++++.|++.+. +++.+|..|.||||+|+..++.++++.|+..+ .+++.+|.+|+||||+|+..|+.++|++|++.
T Consensus       114 ~~~e~~~~Ll~~g~-d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~-~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~  191 (223)
T d1uoha_         114 NRHEIAVMLLEGGA-NPDAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ  191 (223)
T ss_dssp             TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCC-CCCCcCCCCCccchhhhhcCCcchhhhhcccc-ceeeeccCCCCceeccccccCcHHHHHHHHHC
Confidence            55555555554432 35556666666666666666666555554433 33455666666666666666666666666655


Q ss_pred             CCCCccccccCCCcHHHHHHHcCChhHHHHHhc
Q 048248          245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILK  277 (316)
Q Consensus       245 ~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~  277 (316)
                      + .+++.+|..|+||||+| ..|+.+++++|++
T Consensus       192 G-ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         192 G-ASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             T-CCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             C-CCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            3 34566666666666665 3466666666653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=245.23  Aligned_cols=219  Identities=20%  Similarity=0.229  Sum_probs=170.7

Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcH
Q 048248           39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP  118 (316)
Q Consensus        39 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (316)
                      .+.|+.+|..|+.+.|+.++...+..+...|.+|+||||+|+..|+.+++++++.                         
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~-------------------------   58 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-------------------------   58 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-------------------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccc-------------------------
Confidence            4455555566665555555555444445555555555555555555555555554                         


Q ss_pred             HHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHh
Q 048248          119 LHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAAL  198 (316)
Q Consensus       119 L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  198 (316)
                                        ......      .....+.++++.++..++.++++.|+..+. +++.+|.+|.||||+|+..
T Consensus        59 ------------------~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~-d~~~~d~~g~tpL~~A~~~  113 (223)
T d1uoha_          59 ------------------LGVPVN------DKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASK  113 (223)
T ss_dssp             ------------------HTCCSC------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHH
T ss_pred             ------------------cccccc------cccccccccccccccccccchhHHHhccCc-eeEeeCCCCCchhhHHHHc
Confidence                              332221      123345688889999999999998887764 5789999999999999999


Q ss_pred             CcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          199 GHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       199 g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      |+.++++.|++.+ .+++.+|..|.||||+|+..++.+++++|+..+. +++.+|..|+||||+|+..|+.+++++|++.
T Consensus       114 ~~~e~~~~Ll~~g-~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~-~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~  191 (223)
T d1uoha_         114 NRHEIAVMLLEGG-ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERVEEAKLLVSQ  191 (223)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCC-CCCCCcCCCCCccchhhhhcCCcchhhhhccccc-eeeeccCCCCceeccccccCcHHHHHHHHHC
Confidence            9999999999765 4567789999999999999999999999987654 5799999999999999999999999999988


Q ss_pred             cccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       279 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      |.   .++.+|.+|+||||+| ..|+.++++.|++
T Consensus       192 Ga---d~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         192 GA---SIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TC---CSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CC---CCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            64   4788999999999998 5799999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.5e-37  Score=259.23  Aligned_cols=264  Identities=20%  Similarity=0.266  Sum_probs=202.8

Q ss_pred             ChHHHHHHHh-CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCc
Q 048248           39 DTALHIAARF-GHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNT  117 (316)
Q Consensus        39 ~t~Lh~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t  117 (316)
                      .||||+++.. |..++++.|.+.+.+.  ....+|+||||+|+..|+.+++++|+..........+  ..++.+|.+|+|
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~--~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~G--advn~~d~~G~T   76 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG--ADVNAMDCDENT   76 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTT--CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC--CCTTCCCTTSCC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCc--CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcC--CCccccCCCCCe
Confidence            4788877765 4555665555655443  2234699999999999999998887643110000000  024567899999


Q ss_pred             HHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhcc--ccccccccCCCcHHHHH
Q 048248          118 PLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKR--DLINVRDERNRNPLRYA  195 (316)
Q Consensus       118 ~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~--~~~~~~d~~g~tpLh~A  195 (316)
                      |||+|+..|+.++++.|++.|+++      ...+..|.||+++|+..++..++..+.....  ..++..+..+.++.+.+
T Consensus        77 pLh~A~~~g~~~iv~~Ll~~Gad~------n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          77 PLMLAVLARRRRLVAYLMKAGADP------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             eecccccccccccccccccccccc------ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence            999999999999999999988764      2346688999999999999998887765432  23566788899999999


Q ss_pred             HHhCcHHH---HHHhhcC-------CCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHH
Q 048248          196 AALGHFKI---ACRLSDE-------DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQ  265 (316)
Q Consensus       196 ~~~g~~~~---~~~ll~~-------~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  265 (316)
                      ...+..+.   +..+...       ........+..|+||||+++..++.+++++++...+..++.+|..|+||||+|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~  230 (277)
T d2fo1e1         151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  230 (277)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             HhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHH
Confidence            88765432   2222221       1112234567899999999999999999998888777788899999999999999


Q ss_pred             cCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          266 NGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       266 ~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      .|+.+++++|++.+.   .++.+|.+|+||||+|++.|+.++|++|++++
T Consensus       231 ~g~~~iv~~Ll~~ga---din~~d~~G~T~L~~A~~~~~~~iv~lL~~c~  277 (277)
T d2fo1e1         231 EGRIEVVMYLIQQGA---SVEAVDATDHTARQLAQANNHHNIVDIFDRCR  277 (277)
T ss_dssp             HTCHHHHHHHHHTTC---CSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHCcC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999864   47889999999999999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=243.10  Aligned_cols=225  Identities=21%  Similarity=0.208  Sum_probs=197.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCc--cccCCCCCCcHHHHHHHhC
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL--VSVPNHKSETPMHVAARAG   83 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~A~~~g   83 (316)
                      .|||.||..|+.+.++.|+...+..++.++.+|+||||+|+..|+.+++++|++.+++.  ....+..|.+|+|+++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            59999999999999999999888889999999999999999999999999999987653  3446778999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII  163 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~  163 (316)
                      ..++++.++.......        ....+..+.||++.++..++.++...++..+...      ..++..|.||||+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~------~~~~~~g~t~l~~a~~  147 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPD--------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV------RIKDKFNQIPLHRAAS  147 (229)
T ss_dssp             CHHHHHHHHSSSSCCC--------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS------CCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccccc--------ccccccccccccccccccchhhhhhhhhhhcccc------cccCCCCCCccchhhh
Confidence            9999998887643321        2345788999999999999999999999887554      2356688999999999


Q ss_pred             hCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHh
Q 048248          164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLH  243 (316)
Q Consensus       164 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  243 (316)
                      .|+.++++.|+..+...++.+|++|.||||+|++.|+.++++.|+...+.+++.+|.+|+||||+|+.   .+++++|++
T Consensus       148 ~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~  224 (229)
T d1ixva_         148 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLN  224 (229)
T ss_dssp             HTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHH
Confidence            99999999999887777899999999999999999999999999988777888999999999999974   589999999


Q ss_pred             hCCC
Q 048248          244 SYPD  247 (316)
Q Consensus       244 ~~~~  247 (316)
                      ++.+
T Consensus       225 ~g~d  228 (229)
T d1ixva_         225 NVVD  228 (229)
T ss_dssp             HCCC
T ss_pred             cCCC
Confidence            8753

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=243.39  Aligned_cols=270  Identities=22%  Similarity=0.238  Sum_probs=221.9

Q ss_pred             ccHHHHHHHhcCChHHHHHHHHhcCCccccc-cCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh
Q 048248            4 VDHKLFRALRHGYTDKVREFARLNGNRILGT-SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARA   82 (316)
Q Consensus         4 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   82 (316)
                      .++.|+.|++.|+.+.++.|+.. |.+++.+ +..|+||||+|+..|+.+++++|++.+... ...+..+.+|.+.++..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHhhc
Confidence            46789999999999999888765 4667755 457999999999999999999999988764 34566789999999999


Q ss_pred             CChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccc----cccccCCCCCchHH
Q 048248           83 GNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY----NNKAKQGPNNLTLL  158 (316)
Q Consensus        83 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~----~~~~~~~~~~~t~l  158 (316)
                      +..+....++.....          ....+..+.++++.|+..+....+..++.........    .........|.|||
T Consensus        83 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T d1wdya_          83 GSVKLLKLFLSKGAD----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             TCHHHHHHHHHTTCC----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             CCccccchhhhhccc----------ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHH
Confidence            999998888865322          1235778999999999999999888888765443211    11123355789999


Q ss_pred             HHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhC----cHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC
Q 048248          159 HSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALG----HFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ  234 (316)
Q Consensus       159 h~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g----~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~  234 (316)
                      |+|+..|+.++++.|+...+.+++..+..|.++++.+...+    ...+++.|++.+ .+++.+|..|.||||+|+..|+
T Consensus       153 ~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~  231 (285)
T d1wdya_         153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCC-CCCCccCCCCCCccchhhhcCc
Confidence            99999999999999998877789999999999998766543    345777787764 4567789999999999999999


Q ss_pred             HhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCC
Q 048248          235 LSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSD  289 (316)
Q Consensus       235 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d  289 (316)
                      .++|++|++..+.+++.+|.+|.||||+|+++|+.+++++|++.|..   +|.+|
T Consensus       232 ~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd---~n~~d  283 (285)
T d1wdya_         232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS---TDCGD  283 (285)
T ss_dssp             HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC---SCCSS
T ss_pred             HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccc
Confidence            99999999887778899999999999999999999999999998754   45554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=5.9e-37  Score=257.84  Aligned_cols=256  Identities=18%  Similarity=0.197  Sum_probs=198.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCcccccc-CCCChHHHHHHHhCCHHHHHHHH--------hcCCCccccCCCCCCcHH
Q 048248            6 HKLFRALRHGYTDKVREFARLNGNRILGTS-QNGDTALHIAARFGHEILVMEIL--------KHQSDLVSVPNHKSETPM   76 (316)
Q Consensus         6 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll--------~~~~~~~~~~~~~g~tpL   76 (316)
                      +|||.++..+....+.+.+.+.+.  +..+ ..|+||||+||..|+.++|++|+        ..|++ ++..|.+|+|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~--n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESV--NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTT--TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCC--CcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccccCCCCCeee
Confidence            477766655555555566655433  3333 46999999999999998887775        44555 456889999999


Q ss_pred             HHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCch
Q 048248           77 HVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT  156 (316)
Q Consensus        77 h~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t  156 (316)
                      |+|+..|+.+++++|++.+++.          +.+|.+|.|||++|+..++.++...+.......   ......+....+
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~----------n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~  145 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADP----------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLK---GDIEELDRNGMT  145 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS----------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH---HTTSCCCTTSCC
T ss_pred             cccccccccccccccccccccc----------ccccccccccccchhhhcchhhhhhhhhccccc---ccccccccccch
Confidence            9999999999999999976543          346889999999999999998888776543211   112234556788


Q ss_pred             HHHHHHHhCcHHH---HHHHHHhc-------cccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHH
Q 048248          157 LLHSAIIKSQFVV---MAKILEAK-------RDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPL  226 (316)
Q Consensus       157 ~lh~A~~~~~~~~---~~~ll~~~-------~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpL  226 (316)
                      +.+.+...+..+.   +..+....       ....+..+..|.||||+++..++.+.+..++...+.+.+.+|..|+|||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL  225 (277)
T d2fo1e1         146 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  225 (277)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             hHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHH
Confidence            9998887665432   22222221       1223456778999999999999999999888888888888999999999


Q ss_pred             HHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       227 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      |+|+..|+.++|++|++.+ ++++.+|..|+||||+|+..|+.+++++|++.
T Consensus       226 ~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         226 MLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999875 45799999999999999999999999999853

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.1e-35  Score=249.25  Aligned_cols=269  Identities=17%  Similarity=0.183  Sum_probs=205.6

Q ss_pred             HhcCChHHHHHHHHhcCCccc--------cccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC
Q 048248           12 LRHGYTDKVREFARLNGNRIL--------GTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAG   83 (316)
Q Consensus        12 ~~~g~~~~~~~ll~~~~~~~~--------~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g   83 (316)
                      ++....+.++.|.........        ..+..|.|||+.||..|+.++|++|++.|++ ++..|.+|+||||+|+..|
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g   84 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDD   84 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTT
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcC
Confidence            355566777777655432111        1234567999999999999999999999987 4667899999999999999


Q ss_pred             ChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHH
Q 048248           84 NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII  163 (316)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~  163 (316)
                      +.+++++|++.+...          ...+..+.+||++++..++.++++.++..+...      ...+..+.+|+++|+.
T Consensus        85 ~~eiv~~Ll~~~~~~----------~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~a~~  148 (291)
T d1s70b_          85 NVDMVKFLVENGANI----------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV------GAVNSEGDTPLDIAEE  148 (291)
T ss_dssp             CHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHCCS
T ss_pred             Cceeeeeeccccccc----------ccccccccccccccccccccchhhcccccCccc------ccccccCccccccccc
Confidence            999999999875432          234678899999999999999999999987543      2346678999999999


Q ss_pred             hCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHh
Q 048248          164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLH  243 (316)
Q Consensus       164 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  243 (316)
                      .+..+.+..++...+..+......+..+.+..+       ...+. .........+..|.||||.|+..|+.++++.|++
T Consensus       149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  220 (291)
T d1s70b_         149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDA-------RQWLN-SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (291)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-------HHHHH-HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccchhccccccccccccccccccccccccccc-------hhhhc-ccccccccccCCCCChhhHHHHcCChhhhccccc
Confidence            999999999887655433333322222222221       11222 2223334567889999999999999999999998


Q ss_pred             hCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          244 SYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       244 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      .+. +++.++..|+||||+|+..|+.+++++|++.|.   .++.+|..|+||||+|++    +++++|.+
T Consensus       221 ~g~-din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga---dv~~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         221 ARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVENLC---DMEAVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             TTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             cee-cccccccCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHH----HHHHHHHH
Confidence            764 578999999999999999999999999999874   367889999999999975    46666543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5.3e-33  Score=235.39  Aligned_cols=243  Identities=19%  Similarity=0.208  Sum_probs=191.5

Q ss_pred             cHHHHHHHhcCChHHHHHHHHhcCCccccccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC
Q 048248            5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGN   84 (316)
Q Consensus         5 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~   84 (316)
                      .++|+.||..|+.+.|+.|++. |.+++..+.+|+||||+|+..|+.++|++|++.+... ...+..+.+||+.|+..++
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             chHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccc
Confidence            4689999999999999988876 4678999999999999999999999999999988764 4467789999999999999


Q ss_pred             hhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh
Q 048248           85 FGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK  164 (316)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~  164 (316)
                      .++++.|+..+..          ....|..+.+|+++|+..+..+.+..++.........            ........
T Consensus       119 ~~~~~~l~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~------------~~~~~~~~  176 (291)
T d1s70b_         119 LDIAEYLISQGAH----------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA------------ARKEEERI  176 (291)
T ss_dssp             HHHHHHHHHTTCC----------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH------------HHHHHHHH
T ss_pred             cchhhcccccCcc----------cccccccCccccccccccccchhcccccccccccccc------------cccccccc
Confidence            9999999986533          2345789999999999988888888888653322110            00000000


Q ss_pred             CcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhh
Q 048248          165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS  244 (316)
Q Consensus       165 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  244 (316)
                      .. ......+..........+..|.||||+|+..|+.++++.|+..+. +++.++.+|+||||+|+..|+.++|++|+++
T Consensus       177 ~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-din~~~~~g~TpL~~A~~~g~~~iv~lLl~~  254 (291)
T d1s70b_         177 ML-RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (291)
T ss_dssp             HH-HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cc-ccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccccee-cccccccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            01 112222333333355678899999999999999999999997654 5677899999999999999999999999987


Q ss_pred             CCCCccccccCCCcHHHHHHHcCChhHHHHHhcC
Q 048248          245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ  278 (316)
Q Consensus       245 ~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  278 (316)
                      +. +++.+|..|+||||+|++    +++.+|.+.
T Consensus       255 Ga-dv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         255 LC-DMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             TC-CTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             CC-CCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            64 579999999999999975    677777654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-32  Score=219.54  Aligned_cols=221  Identities=22%  Similarity=0.243  Sum_probs=144.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHh----cCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccC
Q 048248           37 NGDTALHIAARFGHEILVMEILK----HQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRD  112 (316)
Q Consensus        37 ~g~t~Lh~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (316)
                      +|+||||+||..|+.++|++|++    .+.+ ++..|.+|+||||+|+..|+.+++++|++.++..          ...+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~----------~~~~   70 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP----------MALD   70 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhcccccccccccccccccc----------cccc
Confidence            68999999999999999888875    4444 4567788999999999999999999998865432          2346


Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHH
Q 048248          113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL  192 (316)
Q Consensus       113 ~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  192 (316)
                      ..|.++++.|....+..+++.+..........  .........++|+.+...........+...........+..|.+||
T Consensus        71 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  148 (228)
T d1k1aa_          71 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL  148 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             cccccccccccccccccchhhhhhcccccccc--ccccccccccccccccccccchhhhhhhccccccccccccchhhHH
Confidence            67788888888888777777666554332111  1122334556777776666666666655554443444455666666


Q ss_pred             HHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHH
Q 048248          193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV  272 (316)
Q Consensus       193 h~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~  272 (316)
                      +.|+..+...+++.++..+. ..+.+|..|.||||+|+..|+.+++++|++.+. +++.+|.+|+||||+|+++|+.+++
T Consensus       149 ~~a~~~~~~~~~~~~~~~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga-d~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         149 IHAVENNSLSMVQLLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhhhcc-ccccccccCcchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHhCCCcccc
Confidence            66666666666666555433 233456666666666666666666666665543 3566666666666666666665554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=218.47  Aligned_cols=196  Identities=20%  Similarity=0.225  Sum_probs=109.5

Q ss_pred             CCChHHHHHHHhCCHHHHH----HHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccC
Q 048248           37 NGDTALHIAARFGHEILVM----EILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRD  112 (316)
Q Consensus        37 ~g~t~Lh~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (316)
                      +|+||||+|+..|+.+++.    ++...+.. ++..|.+|+||||+|+..|+.+++++|++.+++.          ..+|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~----------~~~d   69 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP----------ELRD   69 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS----------CCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCccccccccccccccccccccccccc----------cccc
Confidence            4788888888888754444    34444444 4567778888888888888888888887765432          2356


Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHH
Q 048248          113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL  192 (316)
Q Consensus       113 ~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  192 (316)
                      ..|.|||++++..++.++++.++..+...............|.||||.|+..++.+.+..++.                 
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-----------------  132 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-----------------  132 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred             cccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc-----------------
Confidence            777777777777777777777776543332211122223334455555555555554444444                 


Q ss_pred             HHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHH
Q 048248          193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV  272 (316)
Q Consensus       193 h~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~  272 (316)
                                       .+.......+.+|+||||+|++.|+.+++++|++.+. +++.+|..|+||||+|+..++.+++
T Consensus       133 -----------------~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~ga-d~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         133 -----------------LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             -----------------HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC-CSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             -----------------cCcccccccccCCCCccccccccccHHHHHHHHhcCC-cccccCCCCCCHHHHHHHCCCHHHH
Confidence                             3333333333445555555555555555555554332 2455555555555555555555555


Q ss_pred             HHHhcC
Q 048248          273 VFILKQ  278 (316)
Q Consensus       273 ~~Ll~~  278 (316)
                      ++|++.
T Consensus       195 ~~l~~~  200 (221)
T d1iknd_         195 QQLGQL  200 (221)
T ss_dssp             HHHHTT
T ss_pred             HHHHHc
Confidence            555443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=222.44  Aligned_cols=196  Identities=26%  Similarity=0.268  Sum_probs=159.9

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHH
Q 048248          114 EGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLR  193 (316)
Q Consensus       114 ~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  193 (316)
                      +|+||||+|+..|+.+++..++......  ..+.+.++..|.||||+|+..|+.+++++|+..+. +++.+|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~--~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-d~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC--CCCcccCCCCCCccccccccccccccccccccccc-cccccccccccccc
Confidence            6999999999999876555444322111  11234567789999999999999999999887664 58999999999999


Q ss_pred             HHHHhCcHHHHHHhhcCCCC-----cccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCC
Q 048248          194 YAAALGHFKIACRLSDEDDS-----LVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGH  268 (316)
Q Consensus       194 ~A~~~g~~~~~~~ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  268 (316)
                      +++..+..++++.++.....     .......+|.||||.|+..++.++++.|+..+.......+.+|.||||+|++.|+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc
Confidence            99999999999988865422     2334455789999999999999999999988766434456689999999999999


Q ss_pred             hhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          269 ADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       269 ~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      .+++++|++.+.   +++.+|..|+||||+|+..++.+++++|++.+
T Consensus       158 ~~~v~~Ll~~ga---d~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         158 PDLVSLLLKCGA---DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHHHHHHHTTTC---CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHHHHHhcCC---cccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999998864   47889999999999999999999999998754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7e-31  Score=212.57  Aligned_cols=223  Identities=20%  Similarity=0.220  Sum_probs=184.2

Q ss_pred             CCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccC
Q 048248           71 KSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQ  150 (316)
Q Consensus        71 ~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  150 (316)
                      +|.||||+|+..|+.++++.|++.....      ...++.+|..|+||||+|+..++.++++.|++.+....      ..
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~------g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~------~~   69 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQG------GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM------AL   69 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCccCCCCCccceehhccccccccccccccccccc------cc
Confidence            6999999999999999999888521000      00145578999999999999999999999999876542      34


Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHhcc---ccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHH
Q 048248          151 GPNNLTLLHSAIIKSQFVVMAKILEAKR---DLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLH  227 (316)
Q Consensus       151 ~~~~~t~lh~A~~~~~~~~~~~ll~~~~---~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh  227 (316)
                      ...+.++++.|...++...++.+.....   ...+.......+||+.+...........+...........+..|.+||+
T Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  149 (228)
T d1k1aa_          70 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  149 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             ccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH
Confidence            5578899999999999988877765432   2234556778999999999888888888877666655566778999999


Q ss_pred             HHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhH
Q 048248          228 LASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNI  307 (316)
Q Consensus       228 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~  307 (316)
                      .|+..+...+++.+++.+. .++.+|..|.||||+|+..|+.+++++|++.|.   +++.+|.+|+||||+|++.|+.++
T Consensus       150 ~a~~~~~~~~~~~~~~~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga---d~n~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         150 HAVENNSLSMVQLLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA---DSSLKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             HHHHhhhhhhhhhhhhhcc-ccccccccCcchHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHhCCCccc
Confidence            9999999999999998754 468899999999999999999999999998864   378899999999999999999988


Q ss_pred             HH
Q 048248          308 IL  309 (316)
Q Consensus       308 ~~  309 (316)
                      ||
T Consensus       226 vk  227 (228)
T d1k1aa_         226 LR  227 (228)
T ss_dssp             HT
T ss_pred             cC
Confidence            85

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=5.1e-30  Score=206.32  Aligned_cols=205  Identities=22%  Similarity=0.328  Sum_probs=112.2

Q ss_pred             HHHHHHHHhcCCcccc-ccCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCC
Q 048248           18 DKVREFARLNGNRILG-TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG   96 (316)
Q Consensus        18 ~~~~~ll~~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~   96 (316)
                      +.|+.|++.+ .+++. .|.+|+||||+||+.|+.+++++|+..++.. +..+..+.+|++.++..+............ 
T Consensus         3 ~~v~~Ll~~g-~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (209)
T d1ot8a_           3 QVISDLLAQG-AELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNR-   79 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCT-
T ss_pred             HHHHHHHHCC-CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-cccccccccccccccccccccccccccccc-
Confidence            3444444432 34443 3555666666666666666666666655442 334455555665555555544443333211 


Q ss_pred             CCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 048248           97 NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEA  176 (316)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~  176 (316)
                                                                ....     ......+.++.+.+.........+.|+..
T Consensus        80 ------------------------------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  112 (209)
T d1ot8a_          80 ------------------------------------------ATNL-----NARMHDGTTPLILAARLAIEGMVEDLITA  112 (209)
T ss_dssp             ------------------------------------------TCCT-----TCCCTTCCCHHHHHHHTTCTTHHHHHHHT
T ss_pred             ------------------------------------------cccc-----ccccccccccccccccccchhhhhhhhhh
Confidence                                                      1000     01122334555555544444444444433


Q ss_pred             ccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCC
Q 048248          177 KRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKN  256 (316)
Q Consensus       177 ~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  256 (316)
                      + ..++.++..|+|||++++..+..+++..++..... ++..|.+|.||||+|+..|+.++|++|++.++ +++.+|..|
T Consensus       113 ~-~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-d~n~~d~~g  189 (209)
T d1ot8a_         113 D-ADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFA-NREITDHMD  189 (209)
T ss_dssp             T-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTS
T ss_pred             c-ccccccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCCC-CCCCcCCCC
Confidence            3 33566666677777777776666666666655443 34456667777777777777777777776543 356666666


Q ss_pred             CcHHHHHHHcCChhHHHHH
Q 048248          257 RNILHLAAQNGHADVVVFI  275 (316)
Q Consensus       257 ~tpLh~A~~~g~~~~~~~L  275 (316)
                      +||||+|++.|+.++|++|
T Consensus       190 ~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         190 RLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHhhc
Confidence            6666666666666666654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.2e-28  Score=198.14  Aligned_cols=205  Identities=22%  Similarity=0.260  Sum_probs=171.1

Q ss_pred             hHHHHhhccCCCCCCCCcchhhhhc-cCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh
Q 048248           86 GAAQIFMRPHGNGNNTGTFDDILRK-RDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK  164 (316)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~  164 (316)
                      +++++|++.+.+          ++. .|.+|+||||+|++.|+.++++.|+..++.+      +.++..+.++++.++..
T Consensus         3 ~~v~~Ll~~g~d----------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~------n~~~~~~~~~~~~~~~~   66 (209)
T d1ot8a_           3 QVISDLLAQGAE----------LNATMDKTGETSLHLAARFARADAAKRLLDAGADA------NSQDNTGRTPLHAAVAA   66 (209)
T ss_dssp             HHHHHHHHHHHH----------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHCCCC----------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc------ccccccccccccccccc
Confidence            688899986543          433 5889999999999999999999999987664      23566788999999999


Q ss_pred             CcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhh
Q 048248          165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS  244 (316)
Q Consensus       165 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  244 (316)
                      ++.....................|.++.+.+...........|... +.+.+.++..|.|||+.++..+..++++.++..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~  145 (209)
T d1ot8a_          67 DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMH  145 (209)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeeccc
Confidence            8887766666554444455667789999998888877777766654 445567899999999999999999999999987


Q ss_pred             CCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          245 YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       245 ~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      .. .++..|..|.||||+|+..|+.+++++|++.+.   +++.+|..|+||||+|++.|+.++|++|
T Consensus       146 ~~-~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga---d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         146 HA-NRDAQDDKDETPLFLAAREGSYEASKALLDNFA---NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cc-cccccccccccccchhccccHHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            54 468999999999999999999999999999864   3678899999999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=189.57  Aligned_cols=153  Identities=24%  Similarity=0.325  Sum_probs=137.3

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      +.|+.|+..|+.+.|+.||..++.+++.+|..|+||||+|+. |+.++++.|+..+. +++..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA-SPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccc-cccccccccccccccccccccc
Confidence            469999999999999999998777899999999999999975 77899999997655 4567888999999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      ++++.+++.+. +++.+|..|+||||+|+..|+.+++++|+..    ..++.+|.+|+||||+|++.|+.+++++|+++|
T Consensus        82 ~~~~~~l~~~~-~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h~  156 (156)
T d1bd8a_          82 DTLKVLVEHGA-DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQGHM  156 (156)
T ss_dssp             HHHHHHHHTTC-CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred             ccccccccccc-ccccccCCCCeeecccccccccccccccccc----ccccccCCCCCCHHHHHHHcCCHHHHHHHHhhC
Confidence            99999998764 4688999999999999999999999998853    236788999999999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=7.3e-31  Score=227.43  Aligned_cols=133  Identities=13%  Similarity=0.099  Sum_probs=85.6

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHH---HHhcCCCccccCCCCCCcHHHHHHHhCChhHHHHhhccCCCCCCCCcchhhhh
Q 048248           33 GTSQNGDTALHIAARFGHEILVME---ILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILR  109 (316)
Q Consensus        33 ~~~~~g~t~Lh~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (316)
                      ..+..|.||||+||+.|+.+++++   |++.++. ++..+.+|+||||+||..|+.+++++|++.++...        ..
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~--------~~  155 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI--------MA  155 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH--------HH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--------cc
Confidence            445678888888888888776665   4555554 45566778888888888888888888887654321        11


Q ss_pred             ccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhc
Q 048248          110 KRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAK  177 (316)
Q Consensus       110 ~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~  177 (316)
                      ..+.+|+||||+|+..|+.+++++|++.++.....   +..+.++.||+|.|+..|+.+++++|++.+
T Consensus       156 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~---~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA---MIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHH---HHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             ccccCCCChhHHHHHHhhHHHHHHHHHcCCccccc---ccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            12345777888888888888888877766543211   111223456677777777777777777554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=2.4e-30  Score=224.19  Aligned_cols=232  Identities=18%  Similarity=0.119  Sum_probs=167.8

Q ss_pred             CCCCCCcHHHHHHHhCChhHHHH---hhccCCCCCCCCcchhhhhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccc
Q 048248           68 PNHKSETPMHVAARAGNFGAAQI---FMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRY  144 (316)
Q Consensus        68 ~~~~g~tpLh~A~~~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~  144 (316)
                      .+..|.||||+|++.|+.+++++   |+..+..          ++.+|.+|+||||+|++.|+.++++.|++.+++....
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~----------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~  155 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA  155 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc----------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence            45679999999999999988776   4544332          4456889999999999999999999999998765321


Q ss_pred             cccccCCCCCchHHHHHHHhCcHHHHHHHHHhcccc--ccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCccc------
Q 048248          145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDL--INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVY------  216 (316)
Q Consensus       145 ~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~------  216 (316)
                          ..+.+|.||||+|+..|+.+++++|+..+...  .+..+.+|.||+|.|++.|+.+++++|++.++....      
T Consensus       156 ----~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~  231 (346)
T d2ajaa1         156 ----MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEF  231 (346)
T ss_dssp             ----HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTT
T ss_pred             ----ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHH
Confidence                11235789999999999999999999876532  345566788899999999999999999976543211      


Q ss_pred             ccCCCCCcHHHHHHhcCCHhHHHHHHhhCCC-Cccccc-------cCCCcHHHHHHHcCChhHHHHHhcCcccccc--cc
Q 048248          217 QHDCNGQSPLHLASQNGQLSILENLLHSYPD-SIEFID-------NKNRNILHLAAQNGHADVVVFILKQPEVEDL--IN  286 (316)
Q Consensus       217 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~d-------~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~--~~  286 (316)
                      ..+..+.+|++.+...+..+....+...... ..+..+       ..+.++|+.|+..|+.+++++|++.+.....  .+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~  311 (346)
T d2ajaa1         232 EYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA  311 (346)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred             HcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccc
Confidence            1223344666666665555544434332211 112222       2346789999999999999999987654332  23


Q ss_pred             cCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          287 SSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       287 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      ..+.+|+||||+|++.||.++|++|+.
T Consensus       312 ~~~~~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         312 TIPGDANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             SSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHhC
Confidence            445679999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-28  Score=185.05  Aligned_cols=154  Identities=27%  Similarity=0.350  Sum_probs=134.6

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      +|||+|+..|+.++++.|++.+. +++.+|.+|.||||+|+ .|+.++++.|++.+. +++..+..|.|||+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~-d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a-~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA-NPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CcCccCCcccccccccc-ccccccccccccccc-ccccccccCccccccccccccc
Confidence            79999999999999999988764 58999999999999886 688899998887665 4567888999999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM  315 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~~  315 (316)
                      +++++|+..+.. ++..+..|.+|||+|+..++.+++++|++.++.  .++.+|..|+||||+|++.++.+++++|+++|
T Consensus        80 ~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccc--cccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999977544 688899999999999999999999999987653  36788999999999999999999999999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.7e-26  Score=175.18  Aligned_cols=149  Identities=22%  Similarity=0.250  Sum_probs=127.3

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      ||||.|+..|+.++|+.||..+.+ ++ .|..|+||||+|+..++.+.+..++....... ..+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCcccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            899999999999999999987653 44 68899999999999999988888876665543 4566778999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHH
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL  311 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  311 (316)
                      +++++++..+. ..+.+|..|+||||+|+..|+.+++++|++.+.   .++.+|.+|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~l~~~~~-~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga---d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQEVVELLIKYGA---DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCC-ccccccccCchHHHhhhhcchhheeeecccccc---CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999887765 457889999999999999999999999998864   3678899999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-26  Score=175.97  Aligned_cols=154  Identities=19%  Similarity=0.233  Sum_probs=138.4

Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA  196 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  196 (316)
                      +|||.|+..|+.++++.|++.++++      +.++..|.||||+|+ .++.+++++|++.+. +++.++..|.+|++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~------n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a-~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV------NAQNGFGRTALQVMK-LGNPEIARRLLLRGA-NPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT------TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc------CccCCcccccccccc-ccccccccccccccc-ccccccccCcccccccc
Confidence            7999999999999999999998765      235678999999886 789999999998765 48899999999999999


Q ss_pred             HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          197 ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       197 ~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      ..+..+.+..++..+.. .+..|..|.+|||+|+..++.+++++|++.++.+.+.+|..|+||||+|+..|+.+++++|+
T Consensus        75 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999998876654 46688999999999999999999999999988778999999999999999999999999999


Q ss_pred             cCc
Q 048248          277 KQP  279 (316)
Q Consensus       277 ~~~  279 (316)
                      +.|
T Consensus       154 ~~G  156 (156)
T d1ihba_         154 ANG  156 (156)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.5e-26  Score=195.05  Aligned_cols=187  Identities=18%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCh-------hHHHHhhccCCCCCCCCcchhh
Q 048248           35 SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNF-------GAAQIFMRPHGNGNNTGTFDDI  107 (316)
Q Consensus        35 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~-------~~~~~l~~~~~~~~~~~~~~~~  107 (316)
                      |.+|+||||+||..|+.++|++|++.+++. ...|..|+||||.|+..++.       ++++++..             .
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-------------~  169 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-------------C  169 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-------------G
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh-------------h
Confidence            556666666666666666666666666543 34555666666666654431       12222221             1


Q ss_pred             hhccCCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHH-HHHHHHHhcccccccccc
Q 048248          108 LRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFV-VMAKILEAKRDLINVRDE  186 (316)
Q Consensus       108 ~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~-~~~~ll~~~~~~~~~~d~  186 (316)
                      +...|..|+||||+++..+..+                           +...+++. ..+ ++..++............
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~---------------------------~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~  221 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMT---------------------------GCSAAAKY-YLDILMGWIVKKQNRPIQSGTN  221 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTST---------------------------TCHHHHHH-HHHHHHHHHHHGGGCCEEEC--
T ss_pred             hhhcccccCCHHHHHHHHhCcc---------------------------ccHHHHHH-HHHHHHHHHHhcCCcchhcccc
Confidence            2334555666666555332110                           00000000 011 223333333333334444


Q ss_pred             CCCcHHHHHHHhCcHHHHHHhhcC--CCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHH
Q 048248          187 RNRNPLRYAAALGHFKIACRLSDE--DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA  264 (316)
Q Consensus       187 ~g~tpLh~A~~~g~~~~~~~ll~~--~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  264 (316)
                      .+.++++.+...........+...  ....++.+|.+|+||||+|++.|+.++|++|++.+ ++++.+|..|+|||++|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             cccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            555555554443322222111100  01123456677777777777777777777777654 335777777777777764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.5e-25  Score=168.88  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=131.1

Q ss_pred             CcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHH
Q 048248          116 NTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYA  195 (316)
Q Consensus       116 ~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  195 (316)
                      .||||.|++.|+.++++.|+..++...       .+..|.||||+|+..++.+.+..++..... ....+..+.++++.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-------~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-------cccCCCcccccccccccccccccccccccc-ccccccccccccccc
Confidence            489999999999999999999986532       366789999999999999999888766544 466677899999999


Q ss_pred             HHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHH
Q 048248          196 AALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI  275 (316)
Q Consensus       196 ~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~L  275 (316)
                      +...+.+.++.++..+. +...+|.+|+||||+|+..|+.++|++|++.+ .+++.+|..|.||||+|+.+|+.+++++|
T Consensus        75 ~~~~~~~~~~~l~~~~~-~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTCHHHHHHHHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccceeeecccccCC-ccccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999988886655 45678999999999999999999999999875 45799999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.7e-25  Score=169.47  Aligned_cols=152  Identities=21%  Similarity=0.246  Sum_probs=131.5

Q ss_pred             cHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHH
Q 048248          117 TPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA  196 (316)
Q Consensus       117 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  196 (316)
                      +.|+.|+..|+.++++.|+..+...     .+..+..|.||||+|+. ++.+.+++|+..+. .++..+..|.+|+++++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~-----~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMMF-GSTAIALELLKQGA-SPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC-----TTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC-----CCccCCCCCcccccccc-cccccccccccccc-ccccccccccccccccc
Confidence            4599999999999999999865432     23456789999999874 78999999997765 47889999999999999


Q ss_pred             HhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHh
Q 048248          197 ALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL  276 (316)
Q Consensus       197 ~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll  276 (316)
                      ..++.++++.++..+. +++.+|.+|+||||+|+..|+.+++++|+. + .+++.+|..|+||||+|+..|+.+++++|+
T Consensus        77 ~~~~~~~~~~~l~~~~-~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGA-DVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HTTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             cccccccccccccccc-ccccccCCCCeeeccccccccccccccccc-c-ccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999998764 456789999999999999999999998874 3 457899999999999999999999999998


Q ss_pred             cC
Q 048248          277 KQ  278 (316)
Q Consensus       277 ~~  278 (316)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            64

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.1e-26  Score=193.15  Aligned_cols=180  Identities=18%  Similarity=0.185  Sum_probs=113.9

Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHhCcH---HHHHHHHHhccccccccccCC
Q 048248          112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQF---VVMAKILEAKRDLINVRDERN  188 (316)
Q Consensus       112 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~~~~---~~~~~ll~~~~~~~~~~d~~g  188 (316)
                      |.+|+||||+|++.|+.++++.|++.++++.      .++..|.||||.|+..++.   ..+..++......++.+|..|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~------~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g  177 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL------YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  177 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------cCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccccc
Confidence            7788888888888888888888888776542      3455788888888876542   112233333233467788999


Q ss_pred             CcHHHHHHHhCcH-----------H-HHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhh--CCCCcccccc
Q 048248          189 RNPLRYAAALGHF-----------K-IACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHS--YPDSIEFIDN  254 (316)
Q Consensus       189 ~tpLh~A~~~g~~-----------~-~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~--~~~~~~~~d~  254 (316)
                      +||||+++..+..           + ++..++.............+.++++.+........+..+...  ....++.+|.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            9999988865431           1 233444445444444556667777777665554444432211  1122678899


Q ss_pred             CCCcHHHHHHHcCChhHHHHHhcCcccccccccCCCCCCcHHHHHH
Q 048248          255 KNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA  300 (316)
Q Consensus       255 ~g~tpLh~A~~~g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  300 (316)
                      +|+||||+|++.|+.+++++|++.+.   .++.+|..|+|||++|+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~~GA---d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLDYGA---DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHTTC---CTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999874   36789999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=159.67  Aligned_cols=120  Identities=22%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             CCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCC-cHHHHHHHc
Q 048248          188 NRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR-NILHLAAQN  266 (316)
Q Consensus       188 g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~  266 (316)
                      +.++||+|++.|+.++++.|++.+ .+++.+|..|.||||+|+ .|+.+++++|++.+. +++..+..|. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA-EPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-CCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC-Cccccccccccccccccc-ccccccccccccccc-cccccccccccccccccccc
Confidence            346666666666666666666543 345556666667666553 566667766666543 3455555544 467777777


Q ss_pred             CChhHHHHHhcCcccccccccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 048248          267 GHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR  313 (316)
Q Consensus       267 g~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  313 (316)
                      |+.+++++|++.+.   .++.+|.+|+||||+|++.|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga---~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGA---RLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTC---CSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc---ccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777777666542   255666667777777777777777776654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4.6e-25  Score=160.53  Aligned_cols=105  Identities=27%  Similarity=0.279  Sum_probs=69.6

Q ss_pred             cHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCCh
Q 048248          190 NPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA  269 (316)
Q Consensus       190 tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  269 (316)
                      |||++|++.|+.++++.|++.+ .+++.+|.+|+||||+|+..|+.+++++|++.+. +++.+|..|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g-~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~-din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTT-CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC-TTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhh-hccccccccccccccccccccccccccccccccc-eeeecccccccchhhhhhcCch
Confidence            5667777777766666666543 3445566667777777777777777776666543 3566677777777777777777


Q ss_pred             hHHHHHhcCcccccccccCCCCCCcHHHHH
Q 048248          270 DVVVFILKQPEVEDLINSSDVDGNTPLHLA  299 (316)
Q Consensus       270 ~~~~~Ll~~~~~~~~~~~~d~~g~t~L~~A  299 (316)
                      +++++|++.+.   .++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~Ga---d~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGA---DKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCC---CSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccc---cceeeCCCCCCHHHHH
Confidence            77777776653   3556677777777766

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-24  Score=157.23  Aligned_cols=120  Identities=23%  Similarity=0.250  Sum_probs=105.4

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCC-cHHHHHHhc
Q 048248          154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQ-SPLHLASQN  232 (316)
Q Consensus       154 ~~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~-tpLh~A~~~  232 (316)
                      +.++||+|+..|+.++++.|++.+ .+++.+|.+|.||||+|+ .|+.++++.|++.+.. ++.++..|. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC-Cccccccccccccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            458999999999999999999875 468999999999999775 6899999999977654 556777665 799999999


Q ss_pred             CCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhc
Q 048248          233 GQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK  277 (316)
Q Consensus       233 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~  277 (316)
                      |+.+++++|++.+ .+++.+|..|+||||+|+++|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc-cccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999986 4579999999999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3.3e-24  Score=155.93  Aligned_cols=106  Identities=20%  Similarity=0.163  Sum_probs=95.5

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQL  235 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  235 (316)
                      |||++|+..|+.++++.|++.+. +++.+|..|+||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~-d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~-din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTC-CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC-TTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhh-ccccccccccccccccccccccccccccccccc-eeeecccccccchhhhhhcCch
Confidence            89999999999999999998764 589999999999999999999999998887654 5677899999999999999999


Q ss_pred             hHHHHHHhhCCCCccccccCCCcHHHHHH
Q 048248          236 SILENLLHSYPDSIEFIDNKNRNILHLAA  264 (316)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  264 (316)
                      +++++|++.+ .+++.+|.+|+||||+|.
T Consensus        82 ~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKG-ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTC-CCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhccc-ccceeeCCCCCCHHHHHh
Confidence            9999999876 457999999999999884

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=155.26  Aligned_cols=119  Identities=18%  Similarity=0.137  Sum_probs=66.6

Q ss_pred             cHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCCh
Q 048248          190 NPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA  269 (316)
Q Consensus       190 tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  269 (316)
                      ++|+.|+..|+.++++.|++.+ .+++.+|.+|+||||+|+..|+.+++++|++.+. +++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g-~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~-~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC-CCcccccccccccccccccccccccccccccccc-ccccccccCcccccccchhhHH
Confidence            3455666666666666555543 2345556666666666666666666666665532 3455666666666666666666


Q ss_pred             hHHHHHhcCcccccccccCC-CCCCcHHHHH--HHcCChhHHHHHhh
Q 048248          270 DVVVFILKQPEVEDLINSSD-VDGNTPLHLA--AINNHFNIILVLAR  313 (316)
Q Consensus       270 ~~~~~Ll~~~~~~~~~~~~d-~~g~t~L~~A--~~~~~~~~~~~Ll~  313 (316)
                      +++++|++.+..   ++..+ .+|+||++++  +++|+.+++++|+.
T Consensus        81 ~~v~~Ll~~ga~---v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCC---cccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            666666655432   23232 2355554443  44556666666654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.9e-23  Score=151.50  Aligned_cols=121  Identities=18%  Similarity=0.236  Sum_probs=104.3

Q ss_pred             chHHHHHHHhCcHHHHHHHHHhccccccccccCCCcHHHHHHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCC
Q 048248          155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ  234 (316)
Q Consensus       155 ~t~lh~A~~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~  234 (316)
                      .++|+.|+..|+.++++.|++.+. +++.+|.+|+||||+|+..|+.++++.|++.+ .+.+.+|.+|+||||+|+..|+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~-d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCC-Cccccccccccccccccccccccccccccccc-cccccccccCcccccccchhhH
Confidence            478999999999999999997764 58999999999999999999999999999765 4567789999999999999999


Q ss_pred             HhHHHHHHhhCCCCcccccc-CCCcHHHHH--HHcCChhHHHHHhcC
Q 048248          235 LSILENLLHSYPDSIEFIDN-KNRNILHLA--AQNGHADVVVFILKQ  278 (316)
Q Consensus       235 ~~iv~~Ll~~~~~~~~~~d~-~g~tpLh~A--~~~g~~~~~~~Ll~~  278 (316)
                      .+++++|++.+.. ++..+. .|+||++++  +..|+.+++++|+..
T Consensus        80 ~~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999987644 566654 588887765  577999999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.2e-21  Score=148.65  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             hHHHHHHHhCcHHHHHHHHHhccccccc------cccCCCcHHHHHHHh---CcHHHHHHhhcCCCCcccccCCCCCcHH
Q 048248          156 TLLHSAIIKSQFVVMAKILEAKRDLINV------RDERNRNPLRYAAAL---GHFKIACRLSDEDDSLVYQHDCNGQSPL  226 (316)
Q Consensus       156 t~lh~A~~~~~~~~~~~ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~~~~ll~~~~~~~~~~d~~g~tpL  226 (316)
                      ..|..|++.++...+..++..+.+ ++.      .+..|+||||+|++.   +..++++.|++.+. +++.+|..|+|||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-din~~d~~g~TpL   85 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVD-LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-NLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-CTTCCCTTCCCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCC-cCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC-Chhhhhhhhcccc
Confidence            345677788888888777766533 222      256688888888864   45677777776544 4566778888888


Q ss_pred             HHHHhcCCHhHHHHHHhhCCCCccccccCCCcHHHHHHHcCChhHHHHHhcCcc
Q 048248          227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE  280 (316)
Q Consensus       227 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~~~  280 (316)
                      |+|+..|+.+++++|++.+ .+++.+|..|+||||+|++.|+.+++++|++.+.
T Consensus        86 h~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            8888888888888888764 3457788888888888888888888888877543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.3e-20  Score=142.76  Aligned_cols=129  Identities=14%  Similarity=0.117  Sum_probs=105.8

Q ss_pred             HHHHHHhcCChhHHHHHHhhCCCcccccccccCCCCCchHHHHHHHh---CcHHHHHHHHHhccccccccccCCCcHHHH
Q 048248          118 PLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK---SQFVVMAKILEAKRDLINVRDERNRNPLRY  194 (316)
Q Consensus       118 ~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~t~lh~A~~~---~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  194 (316)
                      .|+.|++.++...+..++..+.+..........+..|.||||+|+..   +..++++.|+..+. +++.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-din~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-NLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-CTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC-Chhhhhhhhcccccc
Confidence            45577888988888888888765543322333455789999999974   67889999998765 589999999999999


Q ss_pred             HHHhCcHHHHHHhhcCCCCcccccCCCCCcHHHHHHhcCCHhHHHHHHhhCCCC
Q 048248          195 AAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS  248 (316)
Q Consensus       195 A~~~g~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  248 (316)
                      |+..|+.++++.|++.+ .+++.+|.+|+||||+|++.|+.+++++|++.+...
T Consensus        88 A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999764 556789999999999999999999999999875443