Citrus Sinensis ID: 048260

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--

MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST

cccEEEcccccccccccEEcccccccEEEEEccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccc

ccEEEEEccccccccEEEEcccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccHHHHEEEHHccHccEccccHHHHHHHHHHHHHHcccccccEEEEEcccc

mwklkvgegngekdAYIYStnnyagrqiwqfdpeagsdEERAQVEAARLHFynnrdhlkpSADLLWRMQFLKEKkfkqtipqvkikvdgdeeeiTYETAATTALRRGVRFFSalqasdghwpaenagplfflppLVMCLYITGhlntvfpaeseHRKEILRYIHYHqnedggwglhieghst

mwklkvgegngekDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKekkfkqtipqvkikvdgdeeeiTYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST

MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDeeeityetaattaLRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST

*************DAYIYSTNNYAGRQIWQFD*************AARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI*****

MWKLKV*EGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI*****

MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST

MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEG***

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MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		182	2.2.26 [Sep-21-2011]
E2IUA6		779	Taraxerol synthase OS=Kal	N/A	no	0.956	0.223	0.791	2e-79
Q8W3Z1		779	Beta-amyrin synthase OS=B	N/A	no	0.956	0.223	0.752	7e-76
A8C980		759	Germanicol synthase OS=Rh	N/A	no	0.956	0.229	0.752	3e-75
O82146		761	Beta-Amyrin Synthase 2 OS	N/A	no	0.956	0.228	0.736	7e-74
O82140		763	Beta-Amyrin Synthase 1 OS	N/A	no	0.961	0.229	0.721	3e-72
B6EXY6		759	Beta-amyrin synthase OS=A	yes	no	0.961	0.230	0.714	1e-71
E7DN63		761	Beta-amyrin synthase OS=S	N/A	no	0.956	0.228	0.714	3e-71
E7DN64		763	Delta-amyrin synthase OS=	N/A	no	0.956	0.228	0.708	6e-71
Q9MB42		765	Beta-amyrin synthase OS=G	N/A	no	0.956	0.227	0.708	8e-71
E2IUA8		767	Friedelin synthase OS=Kal	N/A	no	0.956	0.226	0.686	5e-70

>sp\|E2IUA6\|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function desciption

 Score =  294 bits (753), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/182 (79%), Positives = 161/182 (88%), Gaps = 8/182 (4%)

Query: 1   MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKP 60
           MWKLK+ +G   KD Y+YSTNNY GRQ W+FDPEAG+ EERA+VEAARL+FYNNR  +KP
Sbjct: 20  MWKLKIAQGG--KDPYLYSTNNYVGRQTWEFDPEAGTPEERAEVEAARLNFYNNRYRVKP 77

Query: 61  SADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGH 120
           SADLL+RMQFLKEK FKQTIP VK++   D EEITYET ATTAL+R V F+SALQASDGH
Sbjct: 78  SADLLYRMQFLKEKNFKQTIPPVKVE---DGEEITYET-ATTALKRAVHFYSALQASDGH 133

Query: 121 WPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180
           WPAEN+GPLFFLPPLVMCLYITGHLNTVFPA  EH++EILRYI+YHQNEDGGWGLHIEGH
Sbjct: 134 WPAENSGPLFFLPPLVMCLYITGHLNTVFPA--EHQREILRYIYYHQNEDGGWGLHIEGH 191

Query: 181 ST 182
           ST
Sbjct: 192 ST 193

Oxidosqualene cyclase that generates taraxerol, a triterpenoid product. Taraxerol is probably required to coat the leaf exterior as a defense compound against pathogens or herbivores.
Kalanchoe daigremontiana (taxid: 23013)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 5

>sp\|Q8W3Z1\|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1	Back alignment and function description

>sp\|A8C980\|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1	Back alignment and function description

>sp\|O82146\|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1	Back alignment and function description

>sp\|O82140\|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1	Back alignment and function description

>sp\|B6EXY6\|LUP4_ARATH Beta-amyrin synthase OS=Arabidopsis thaliana GN=BAS PE=1 SV=2	Back alignment and function description

>sp\|E7DN63\|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1	Back alignment and function description

>sp\|E7DN64\|DAMS_SOLLC Delta-amyrin synthase OS=Solanum lycopersicum GN=TTS2 PE=1 SV=1	Back alignment and function description

>sp\|Q9MB42\|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1	Back alignment and function description

>sp\|E2IUA8\|FRIES_KALDA Friedelin synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		182
403377890		779	RecName: Full=Taraxerol synthase; Short=	0.956	0.223	0.791	9e-78
75248718		779	RecName: Full=Beta-amyrin synthase gi\|18	0.956	0.223	0.752	3e-74
359483271		767	PREDICTED: beta-amyrin synthase-like [Vi	0.956	0.226	0.747	1e-73
297735706		872	unnamed protein product [Vitis vinifera]	0.956	0.199	0.747	1e-73
353558864		759	RecName: Full=Germanicol synthase; Short	0.956	0.229	0.752	1e-73
147780749		664	hypothetical protein VITISV_012054 [Viti	0.956	0.262	0.747	2e-73
297735720		846	unnamed protein product [Vitis vinifera]	0.956	0.205	0.747	2e-73
147839872		729	hypothetical protein VITISV_001242 [Viti	0.956	0.238	0.747	3e-73
225443446		757	PREDICTED: beta-amyrin synthase [Vitis v	0.956	0.229	0.747	3e-73
359483267		818	PREDICTED: beta-Amyrin Synthase 2-like [	0.956	0.212	0.736	6e-73

>gi\|403377890\|sp\|E2IUA6.1\|TARS_KALDA RecName: Full=Taraxerol synthase; Short=KdTAS gi\|300807974\|gb\|ADK35123.1\| taraxerol synthase [Kalanchoe daigremontiana]	Back alignment and taxonomy information

 Score =  294 bits (753), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 144/182 (79%), Positives = 161/182 (88%), Gaps = 8/182 (4%)

Query: 1   MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKP 60
           MWKLK+ +G   KD Y+YSTNNY GRQ W+FDPEAG+ EERA+VEAARL+FYNNR  +KP
Sbjct: 20  MWKLKIAQGG--KDPYLYSTNNYVGRQTWEFDPEAGTPEERAEVEAARLNFYNNRYRVKP 77

Query: 61  SADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGH 120
           SADLL+RMQFLKEK FKQTIP VK++   D EEITYET ATTAL+R V F+SALQASDGH
Sbjct: 78  SADLLYRMQFLKEKNFKQTIPPVKVE---DGEEITYET-ATTALKRAVHFYSALQASDGH 133

Query: 121 WPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180
           WPAEN+GPLFFLPPLVMCLYITGHLNTVFPA  EH++EILRYI+YHQNEDGGWGLHIEGH
Sbjct: 134 WPAENSGPLFFLPPLVMCLYITGHLNTVFPA--EHQREILRYIYYHQNEDGGWGLHIEGH 191

Query: 181 ST 182
           ST
Sbjct: 192 ST 193

Source: Kalanchoe daigremontiana

Species: Kalanchoe daigremontiana

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|75248718\|sp\|Q8W3Z1.1\|BAMS_BETPL RecName: Full=Beta-amyrin synthase gi\|18147596\|dbj\|BAB83088.1\| beta-amyrin synthase [Betula platyphylla]	Back alignment and taxonomy information

>gi\|359483271\|ref\|XP_002265019.2\| PREDICTED: beta-amyrin synthase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297735706\|emb\|CBI18393.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|353558864\|sp\|A8C980.1\|GERS_RHISY RecName: Full=Germanicol synthase; Short=RsM1 gi\|157679387\|dbj\|BAF80441.1\| multifunctional triterpene synthase [Rhizophora stylosa]	Back alignment and taxonomy information

>gi\|147780749\|emb\|CAN60316.1\| hypothetical protein VITISV_012054 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297735720\|emb\|CBI18407.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147839872\|emb\|CAN65909.1\| hypothetical protein VITISV_001242 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225443446\|ref\|XP_002270934.1\| PREDICTED: beta-amyrin synthase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359483267\|ref\|XP_002269085.2\| PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		182
UNIPROTKB\|E2IUA6		779	E2IUA6 "Taraxerol synthase" [K	0.956	0.223	0.736	6.7e-73
UNIPROTKB\|Q8W3Z1		779	OSCBPY "Beta-amyrin synthase"	0.956	0.223	0.714	4.9e-69
UNIPROTKB\|A8CDT2		759	BAS "Beta-amyrin synthase" [Br	0.956	0.229	0.692	3.6e-66
UNIPROTKB\|E2IUA7		767	E2IUA7 "Glutinol synthase" [Ka	0.956	0.226	0.642	1.6e-65
TAIR\|locus:2207315		759	BAS "beta-amyrin synthase" [Ar	0.961	0.230	0.675	2.9e-64
UNIPROTKB\|E2IUA8		767	E2IUA8 "Friedelin synthase" [K	0.956	0.226	0.648	2.6e-63
UNIPROTKB\|E2IUA9		765	E2IUA9 "Lupeol synthase" [Kala	0.956	0.227	0.648	3.3e-63
TAIR\|locus:504956092		769	CAMS1 "AT1G78955" [Arabidopsis	0.961	0.227	0.620	1.3e-61
UNIPROTKB\|F8WQD0		761	SHS1 "Shionone synthase" [Aste	0.950	0.227	0.624	9e-61
UNIPROTKB\|Q2XPU7		769	Q2XPU7 "Lupeol synthase" [Rici	0.956	0.226	0.631	2.7e-59

UNIPROTKB\|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

 Score = 718 (257.8 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 134/182 (73%), Positives = 152/182 (83%)

Query:     1 MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKP 60
             MWKLK+ +G   KD Y+YSTNNY GRQ W+FDPEAG+ EERA+VEAARL+FYNNR  +KP
Sbjct:    20 MWKLKIAQGG--KDPYLYSTNNYVGRQTWEFDPEAGTPEERAEVEAARLNFYNNRYRVKP 77

Query:    61 SADLLWRMQFLKEKKFKQTIPQVKIKVDGDXXXXXXXXXXXXXLRRGVRFFSALQASDGH 120
             SADLL+RMQFLKEK FKQTIP VK++ DG+             L+R V F+SALQASDGH
Sbjct:    78 SADLLYRMQFLKEKNFKQTIPPVKVE-DGEEITYETATTA---LKRAVHFYSALQASDGH 133

Query:   121 WPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180
             WPAEN+GPLFFLPPLVMCLYITGHLNTVFPAE  H++EILRYI+YHQNEDGGWGLHIEGH
Sbjct:   134 WPAENSGPLFFLPPLVMCLYITGHLNTVFPAE--HQREILRYIYYHQNEDGGWGLHIEGH 191

Query:   181 ST 182
             ST
Sbjct:   192 ST 193

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0016866 "intramolecular transferase activity" evidence=IDA

UNIPROTKB\|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)]	Back alignment and assigned GO terms

UNIPROTKB\|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

TAIR\|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

TAIR\|locus:504956092 CAMS1 "AT1G78955" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6EXY6	LUP4_ARATH	5, ., 4, ., 9, 9, ., 3, 9	0.7142	0.9615	0.2305	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.4.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		182
PLN02993		763	PLN02993, PLN02993, lupeol synthase	2e-92
PLN03012		759	PLN03012, PLN03012, Camelliol C synthase	4e-92
cd02892		634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	3e-32
TIGR01787		621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	1e-28
TIGR03463		634	TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	1e-08
pfam00432		44	pfam00432, Prenyltrans, Prenyltransferase and squa	2e-05
cd02889		348	cd02889, SQCY, Squalene cyclase (SQCY) domain; fou	2e-04

>gnl\|CDD\|215537 PLN02993, PLN02993, lupeol synthase	Back alignment and domain information

 Score =  284 bits (728), Expect = 2e-92
 Identities = 128/181 (70%), Positives = 143/181 (79%), Gaps = 7/181 (3%)

Query: 1   MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKP 60
           MWKLK+GEGNGE D Y++S+NN+ GRQ W+FDP+AG+ EERA VE AR  F +NR  +K 
Sbjct: 1   MWKLKIGEGNGE-DPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKG 59

Query: 61  SADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGH 120
            +DLLWRMQFLKE KF+Q IP VKI      EEITYET AT ALRRGV FFSALQASDGH
Sbjct: 60  CSDLLWRMQFLKEAKFEQVIPPVKID---RGEEITYET-ATNALRRGVSFFSALQASDGH 115

Query: 121 WPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180
           WP E  GPLFFLPPLV CLYITGHL  VF A  EHRKE+LR+I+ HQNEDGGWGLHIE  
Sbjct: 116 WPGEITGPLFFLPPLVFCLYITGHLEEVFDA--EHRKEMLRHIYCHQNEDGGWGLHIESK 173

Query: 181 S 181
           S
Sbjct: 174 S 174

Length = 763

>gnl\|CDD\|166653 PLN03012, PLN03012, Camelliol C synthase	Back alignment and domain information

>gnl\|CDD\|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>gnl\|CDD\|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases	Back alignment and domain information

>gnl\|CDD\|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	Back alignment and domain information

>gnl\|CDD\|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat	Back alignment and domain information

>gnl\|CDD\|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		182
PLN03012		759	Camelliol C synthase	100.0
PLN02993		763	lupeol synthase	100.0
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	100.0
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.82
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.81
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.81
PLN02993		763	lupeol synthase	99.75
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.75
PLN03012		759	Camelliol C synthase	99.74
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.66
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.57
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.54
PF13243		109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.44
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.35
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	99.21
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	99.14
PF13249		113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	98.95
cd02889		348	SQCY Squalene cyclase (SQCY) domain; found in clas	98.87
PF13249		113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	98.83
cd02889		348	SQCY Squalene cyclase (SQCY) domain; found in clas	98.64
cd02890		286	PTase Protein prenyltransferase (PTase) domain, be	98.48
cd00688		300	ISOPREN_C2_like This group contains class II terpe	98.45
cd02897		292	A2M_2 Proteins similar to alpha2-macroglobulin (al	98.39
PF13243		109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	98.39
cd02891		282	A2M_like Proteins similar to alpha2-macroglobulin	98.37
cd02894		287	GGTase-II Geranylgeranyltransferase type II (GGTas	98.36
cd02896		297	complement_C3_C4_C5 Proteins similar to C3, C4 and	98.28
cd00688		300	ISOPREN_C2_like This group contains class II terpe	98.27
PLN03201		316	RAB geranylgeranyl transferase beta-subunit; Provi	98.15
cd02890		286	PTase Protein prenyltransferase (PTase) domain, be	98.05
cd02895		307	GGTase-I Geranylgeranyltransferase types I (GGTase	97.99
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432		44	Prenyltrans: Prenyltransferase and squalene oxidas	97.95
KOG0366		329	consensus Protein geranylgeranyltransferase type I	97.78
PLN03201		316	RAB geranylgeranyl transferase beta-subunit; Provi	97.66
cd02893		299	FTase Protein farnesyltransferase (FTase)_like pro	97.61
PLN02710		439	farnesyltranstransferase subunit beta	97.5
cd02896		297	complement_C3_C4_C5 Proteins similar to C3, C4 and	97.44
cd02893		299	FTase Protein farnesyltransferase (FTase)_like pro	97.41
COG5029		342	CAL1 Prenyltransferase, beta subunit [Posttranslat	97.3
cd02897		292	A2M_2 Proteins similar to alpha2-macroglobulin (al	97.3
cd02894		287	GGTase-II Geranylgeranyltransferase type II (GGTas	97.28
cd02895		307	GGTase-I Geranylgeranyltransferase types I (GGTase	97.22
PLN02710		439	farnesyltranstransferase subunit beta	97.17
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	96.92
PF07678		246	A2M_comp: A-macroglobulin complement component; In	96.68
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432		44	Prenyltrans: Prenyltransferase and squalene oxidas	96.68
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	96.19
KOG0367		347	consensus Protein geranylgeranyltransferase Type I	95.88
cd02891		282	A2M_like Proteins similar to alpha2-macroglobulin	95.72
KOG0365		423	consensus Beta subunit of farnesyltransferase [Pos	95.69
PF07678		246	A2M_comp: A-macroglobulin complement component; In	94.63
PRK01631		76	hypothetical protein; Provisional	89.82
PF09492		289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	89.78
PF01122		326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	89.69
PLN02592		800	ent-copalyl diphosphate synthase	89.26
PF05979		65	DUF896: Bacterial protein of unknown function (DUF	88.72
COG4224		77	Uncharacterized protein conserved in bacteria [Fun	88.62
PRK02539		85	hypothetical protein; Provisional	88.25
PRK01546		79	hypothetical protein; Provisional	87.8
KOG0367		347	consensus Protein geranylgeranyltransferase Type I	86.64
PLN02279		784	ent-kaur-16-ene synthase	85.88
COG1689		274	Uncharacterized protein conserved in archaea [Func	85.55
COG5029		342	CAL1 Prenyltransferase, beta subunit [Posttranslat	84.45
KOG0366		329	consensus Protein geranylgeranyltransferase type I	81.78
PLN02592		800	ent-copalyl diphosphate synthase	81.61

>PLN03012 Camelliol C synthase	Back alignment and domain information

Probab=100.00  E-value=1.8e-63  Score=477.81  Aligned_cols=175  Identities=72%  Similarity=1.263  Sum_probs=171.2

Q ss_pred             CceeeecCCCCCCCCceeecCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCC
Q 048260            1 MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTI   80 (182)
Q Consensus         1 mw~lk~~~~~~~~~~~l~s~n~~~grq~wefdp~~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~i   80 (182)
                      ||||||++|+ +++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+|||||||+.|||++++.|
T Consensus         1 ~wrl~~~~~~-~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~~~~   79 (759)
T PLN03012          1 MWKLKIAEGN-GDDPYLFSTNNFAGRQTWEFDPDAGSPEELAAVEEARRIFYDDRFHVKASSDLIWRMQFLKEKKFEQRI   79 (759)
T ss_pred             CCceEeCCCC-CCCcceecccccCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHhccCcccCC
Confidence            9999999984 238999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeccCCCCCcccHHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 048260           81 PQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEIL  160 (182)
Q Consensus        81 p~vk~~id~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~  160 (182)
                      |.||+   ++.++||++++ .++++||++||+++|.+||||+|+++||+|++|++||++|++|.+|+++++  ++++|++
T Consensus        80 p~~~~---~~~~~~~~~~~-~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~--~~~~ei~  153 (759)
T PLN03012         80 APAKV---EDAEKITFEIA-TNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQ--DHRKEIL  153 (759)
T ss_pred             CcccC---CCCcccchHHH-HHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCH--HHHHHHH
Confidence            99999   99999999999 999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHhccCCCCCccCcCCCCCC
Q 048260          161 RYIHYHQNEDGGWGLHIEGHST  182 (182)
Q Consensus       161 ryL~~~QneDGGWGl~~eG~st  182 (182)
                      |||++|||+|||||+|++||||
T Consensus       154 ryl~~~Qn~DGGWglh~eg~s~  175 (759)
T PLN03012        154 RYIYCHQKEDGGWGLHIEGHST  175 (759)
T ss_pred             HHHHHhccCCCCeecccCCCCc
Confidence            9999999999999999999997

>PLN02993 lupeol synthase	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>PLN02993 lupeol synthase	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>PLN03012 Camelliol C synthase	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C	Back alignment and domain information

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C	Back alignment and domain information

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement	Back alignment and domain information

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A	Back alignment and domain information

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement	Back alignment and domain information

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement	Back alignment and domain information

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional	Back alignment and domain information

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family	Back alignment and domain information

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional	Back alignment and domain information

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>PLN02710 farnesyltranstransferase subunit beta	Back alignment and domain information

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement	Back alignment and domain information

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>PLN02710 farnesyltranstransferase subunit beta	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family	Back alignment and domain information

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family	Back alignment and domain information

>PRK01631 hypothetical protein; Provisional	Back alignment and domain information

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4	Back alignment and domain information

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals	Back alignment and domain information

>PLN02592 ent-copalyl diphosphate synthase	Back alignment and domain information

>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function	Back alignment and domain information

>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK02539 hypothetical protein; Provisional	Back alignment and domain information

>PRK01546 hypothetical protein; Provisional	Back alignment and domain information

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02279 ent-kaur-16-ene synthase	Back alignment and domain information

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02592 ent-copalyl diphosphate synthase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		182
1w6j_A		732	Structure Of Human Osc In Complex With Ro 48-8071 L		8e-08
1w6k_A		732	Structure Of Human Osc In Complex With Lanosterol L		8e-08

>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732

Back alignment and structure

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 107 GVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166
           G+ F+  LQA DGHW     G       L+  L IT H+  + P  + +R+EI+RY+   
Sbjct: 80  GMTFYVGLQAEDGHW----TGDYGGPLFLLPGLLITCHVARI-PLPAGYREEIVRYLRSV 134
Query: 167 QNEDGGWGLHIEGHST 182
           Q  DGGWGLHIE  ST
Sbjct: 135 QLPDGGWGLHIEDKST 150

PyMOL of 1w6j

>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		182
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	3e-39
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	3e-25

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732	Back alignment and structure

 Score =  140 bits (354), Expect = 3e-39
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 44/182 (24%)

Query: 1   MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKP 60
            +K +        D   +  N   GRQ W +  +  +  E+  +EA              
Sbjct: 13  PYKTEPAT-----DLGRWRLNCERGRQTWTYLQDERAGREQTGLEA-------------- 53

Query: 61  SADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGH 120
                     L  K + + +P+                 A      G+ F+  LQA DGH
Sbjct: 54  ------YALGLDTKNYFKDLPKAH--------------TAFEGALNGMTFYVGLQAEDGH 93

Query: 121 WPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180
           W  +  GPLF LP L++  ++        P  + +R+EI+RY+   Q  DGGWGLHIE  
Sbjct: 94  WTGDYGGPLFLLPGLLITCHVARI-----PLPAGYREEIVRYLRSVQLPDGGWGLHIEDK 148

Query: 181 ST 182
           ST
Sbjct: 149 ST 150

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		182
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	99.92
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.87
1n4q_B		377	Geranyltransferase type-I beta subunit; protein ge	99.3
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.29
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	99.22
1r76_A		408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.13
2h6f_B		437	Protein farnesyltransferase beta subunit; ftase, f	99.01
2h6f_B		437	Protein farnesyltransferase beta subunit; ftase, f	98.99
3dss_B		331	Geranylgeranyl transferase type-2 subunit beta; pr	98.93
3q7a_B		520	Farnesyltransferase beta subunit; protein prenyltr	98.9
1gxm_A		332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.76
1hzf_A		367	Complement factor C4A; alpha-alpha 6 barrel, immun	98.53
3dss_B		331	Geranylgeranyl transferase type-2 subunit beta; pr	98.4
1qqf_A		277	Protein (complement C3DG); alpha-alpha barrel, imm	98.15
2wy7_A		310	Complement C3D fragment; immune system, immune res	98.05
1qqf_A		277	Protein (complement C3DG); alpha-alpha barrel, imm	97.97
2wy7_A		310	Complement C3D fragment; immune system, immune res	97.96
1gxm_A		332	Pectate lyase; mechanism, elimination; 1.32A {Cell	97.72
1n4q_B		377	Geranyltransferase type-I beta subunit; protein ge	97.4
2pmv_A		399	Gastric intrinsic factor; cobalamin transport prot	97.34
3q7a_B		520	Farnesyltransferase beta subunit; protein prenyltr	97.31
1r76_A		408	Pectate lyase; A-helical structure; 2.65A {Azospir	97.29
1hzf_A		367	Complement factor C4A; alpha-alpha 6 barrel, immun	97.09
2bb6_A		414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	97.07
4acq_A		1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	97.06
2hr0_B		915	Complement C3 alpha' chain; complement component C	96.93
2pn5_A		1325	TEP1R, thioester-containing protein I; FULL-length	96.86
2pn5_A		1325	TEP1R, thioester-containing protein I; FULL-length	96.8
3dra_B		390	Geranylgeranyltransferase type I beta subunit; ger	96.57
4acq_A		1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	96.28
2hr0_B		915	Complement C3 alpha' chain; complement component C	96.12
4fxk_B		767	Complement C4-A alpha chain; immune system, proteo	95.65
2b39_A		1661	C3; thioester, immune defense, immune system; HET:	94.84
3cu7_A		1676	Complement C5; Mg domain, inflammation, anaphylato	93.71
2bb6_A		414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	93.51
3sdr_A		817	Alpha-bisabolene synthase; lyase, terpene synthase	90.62
3pya_A		727	ENT-copalyl diphosphate synthase, chloroplastic; c	90.54
3sdr_A		817	Alpha-bisabolene synthase; lyase, terpene synthase	90.15
3prx_B		1642	Cobra venom factor; immune system, complement, imm	88.81
2pmv_A		399	Gastric intrinsic factor; cobalamin transport prot	87.5
3dra_B		390	Geranylgeranyltransferase type I beta subunit; ger	87.36
3s9v_A		785	Abietadiene synthase, chloroplastic; alpha bundle/	87.02
3pya_A		727	ENT-copalyl diphosphate synthase, chloroplastic; c	86.98
3s9v_A		785	Abietadiene synthase, chloroplastic; alpha bundle/	85.96
3p5p_A		764	Taxadiene synthase; class I and II terpene cyclase	85.92
3p5p_A		764	Taxadiene synthase; class I and II terpene cyclase	85.8
2hep_A		85	UPF0291 protein YNZC; SR384, structure, autostruct	83.49
2b39_A		1661	C3; thioester, immune defense, immune system; HET:	80.28

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*	Back alignment and structure

Probab=99.92  E-value=8.5e-26  Score=215.65  Aligned_cols=81  Identities=46%  Similarity=0.815  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccC
Q 048260           96 YETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGL  175 (182)
Q Consensus        96 ~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl  175 (182)
                      .+.+ .++|+||++||+++|.+||||+|+++||+|++|++||++|++|.   ++++  +++++++|||++|||+|||||+
T Consensus        70 ~~~~-~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~~yl~~~Q~~DGgWgl  143 (732)
T 1w6k_A           70 AHTA-FEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPA--GYREEIVRYLRSVQLPDGGWGL  143 (732)
T ss_dssp             CCSH-HHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCT--THHHHHHHHHHHHSCTTSCBCS
T ss_pred             cccH-HHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCH--HHHHHHHHHHHHhcCCCCCccC
Confidence            3456 88999999999999999999999999999999999999999995   6777  8999999999999999999999


Q ss_pred             cCCCCCC
Q 048260          176 HIEGHST  182 (182)
Q Consensus       176 ~~eG~st  182 (182)
                      |++|+||
T Consensus       144 ~~~~~s~  150 (732)
T 1w6k_A          144 HIEDKST  150 (732)
T ss_dssp             BTTSCCB
T ss_pred             CcCCCcc
Confidence            9999996

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*	Back alignment and structure

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*	Back alignment and structure

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*	Back alignment and structure

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*	Back alignment and structure

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1	Back alignment and structure

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...	Back alignment and structure

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...	Back alignment and structure

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*	Back alignment and structure

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*	Back alignment and structure

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*	Back alignment and structure

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4	Back alignment and structure

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*	Back alignment and structure

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A	Back alignment and structure

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A	Back alignment and structure

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A	Back alignment and structure

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A	Back alignment and structure

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*	Back alignment and structure

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*	Back alignment and structure

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*	Back alignment and structure

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*	Back alignment and structure

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1	Back alignment and structure

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4	Back alignment and structure

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*	Back alignment and structure

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}	Back alignment and structure

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...	Back alignment and structure

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}	Back alignment and structure

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}	Back alignment and structure

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}	Back alignment and structure

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}	Back alignment and structure

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...	Back alignment and structure

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*	Back alignment and structure

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}	Back alignment and structure

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A	Back alignment and structure

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*	Back alignment and structure

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*	Back alignment and structure

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*	Back alignment and structure

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*	Back alignment and structure

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*	Back alignment and structure

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*	Back alignment and structure

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}	Back alignment and structure

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}	Back alignment and structure

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*	Back alignment and structure

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}	Back alignment and structure

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*	Back alignment and structure

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*	Back alignment and structure

>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1	Back alignment and structure

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		182
d1w6ka2		279	a.102.4.2 (A:100-378) Lanosterol synthase {Human (	3e-22
d2sqca2		271	a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic	1e-11
d2h6fb1		401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	0.001

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (219), Expect = 3e-22
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 127 GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST 182
           GPLF LP L++  ++        P  + +R+EI+RY+   Q  DGGWGLHIE  ST
Sbjct: 1   GPLFLLPGLLITCHVARI-----PLPAGYREEIVRYLRSVQLPDGGWGLHIEDKST 51

PyMOL of d1w6ka2

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271	Back information, alignment and structure

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		182
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.68
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.65
d3dssb1		325	Rab geranylgeranyltransferase, beta subunit {Rat (	98.63
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	98.61
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.47
d2h6fb1		401	Protein farnesyltransferase, beta-subunit {Human (	98.22
d1r76a_		408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.04
d1gxma_		324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.04
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	98.02
d3dssb1		325	Rab geranylgeranyltransferase, beta subunit {Rat (	97.98
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	97.96
d2h6fb1		401	Protein farnesyltransferase, beta-subunit {Human (	97.79
d1n4qb_		346	Protein farnesyltransferase, beta-subunit {Rat (Ra	97.78
d1r76a_		408	Polygalacturonic acid lyase (pectate lyase) {Azosp	97.72
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	97.28
d1gxma_		324	Polygalacturonic acid lyase (pectate lyase) {Cellv	97.12
d1hzfa_		326	C4adg fragment of complement factor C4a {Human (Ho	96.42
d1c3da_		294	C3D, a C3 fragment and ligand for complement recep	95.83
d1n4qb_		346	Protein farnesyltransferase, beta-subunit {Rat (Ra	93.12
d1c3da_		294	C3D, a C3 fragment and ligand for complement recep	89.47
d1hzfa_		326	C4adg fragment of complement factor C4a {Human (Ho	88.87

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.5e-17  Score=146.72  Aligned_cols=119  Identities=17%  Similarity=0.227  Sum_probs=94.1

Q ss_pred             CCchhHHHHhhhh--------hhhcc--ccCCCCccee----ccCCCCCcccHHHH-----------------HHHHHHH
Q 048260           58 LKPSADLLWRMQF--------LKEKK--FKQTIPQVKI----KVDGDEEEITYETA-----------------ATTALRR  106 (182)
Q Consensus        58 ~~~s~dlL~rmQ~--------~~en~--~~~~ip~vk~----~id~~~~~it~e~v-----------------~~~al~r  106 (182)
                      ...+.|||++||+        +++++  +...+|+++.    .+|++..++|..++                 ...+|+|
T Consensus       199 i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~r  278 (448)
T d1w6ka1         199 LCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQ  278 (448)
T ss_dssp             HHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHH
Confidence            3458999999997        33443  5567777653    38899999998766                 1468999


Q ss_pred             HHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcC
Q 048260          107 GVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI  177 (182)
Q Consensus       107 A~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~  177 (182)
                      |++||.+.|.+||+|+|.|+.+.++ |...+.+|...|..... ...++.++++++||+++||+|||||+..
T Consensus       279 al~yL~~~Q~~DGsW~g~wg~~~~ygT~~al~aL~~~G~~~~~-~~~~~~v~ka~~wLls~Q~~DGGWge~~  349 (448)
T d1w6ka1         279 GLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRD-GTACAEVSRACDFLLSRQMADGGWGEDF  349 (448)
T ss_dssp             HHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBT-TBCCHHHHHHHHHHHTTCCTTSCCCBCT
T ss_pred             HHHHHHccCCCCCcccccCCCcccHHHHHHHHHHHHhCcCccc-ccccHHHHHHHHHHHhccCCCCCccCCC
Confidence            9999999999999999999998766 77888899999852211 1223789999999999999999999753

PyMOL of d1w6ka1

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}	Back information, alignment and structure

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}	Back information, alignment and structure

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}	Back information, alignment and structure

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}	Back information, alignment and structure

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure