Citrus Sinensis ID: 048279

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIFL
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccHHHHHccccccccccccEEEEEccc
cccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccEcccHHHHHHHHHccEEcccccccccHHEEcccccccccccEEEEEEEEc
fakenpgvrvlpqvkvkdtedvteDIVTNTLRRALSYHStlqahdghwpgdyggpmflmpGLVITLSITGALNAVLSEEHKKEMCRYVYNhqnrdggwglhiegpstmfGSVLNYVTLRLLgegandgrgandgrgameRGRSWILEhggataltswGKMWLSVLYLEHLnglatipfplryGFFLIFYHSIQVSAHLCIFL
fakenpgvrvlpqvkvkdtedvteDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEgandgrgandgrGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIFL
FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIFL
******************TEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEG****************GRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIF*
FA*************************TNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIFL
FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIFL
****NPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIFL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHi
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
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FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
O82139 758 Cycloartenol Synthase OS= N/A no 0.846 0.225 0.762 2e-75
Q8W3Z3 757 Cycloartenol synthase 2 O N/A no 0.787 0.210 0.818 4e-75
Q9SXV6 757 Cycloartenol synthase OS= N/A no 0.846 0.225 0.745 2e-73
Q2XPU6 759 Cycloartenol synthase OS= N/A no 0.846 0.225 0.740 6e-73
E2IUB0 764 Cycloartenol synthase OS= N/A no 0.787 0.208 0.769 3e-71
Q6BE25 766 Cycloartenol synthase OS= N/A no 0.787 0.207 0.769 1e-70
P38605 759 Cycloartenol synthase OS= yes no 0.787 0.209 0.751 3e-69
Q9SLP9 765 Cycloartenol synthase OS= N/A no 0.787 0.207 0.739 1e-68
Q8W3Z4 767 Cycloartenol synthase OS= N/A no 0.940 0.247 0.629 9e-68
Q6Z2X6 759 Cycloartenol synthase OS= yes no 0.846 0.225 0.621 5e-59
>sp|O82139|CAS1_PANGI Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  281 bits (720), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 153/177 (86%), Gaps = 6/177 (3%)

Query: 1   FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMP 60
           FA ENPG  VLPQVKV D ED++ED VT TL+RA+S++STLQAHDGHWPGDYGGPMFLMP
Sbjct: 67  FANENPGSVVLPQVKVNDGEDISEDKVTVTLKRAMSFYSTLQAHDGHWPGDYGGPMFLMP 126

Query: 61  GLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRL 120
           GLVITLSITG LN VLS+EHK+E+CRY+YNHQNRDGGWGLHIEGPSTMFG+VLNYVTLRL
Sbjct: 127 GLVITLSITGVLNVVLSKEHKREICRYLYNHQNRDGGWGLHIEGPSTMFGTVLNYVTLRL 186

Query: 121 LGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIP 177
           LGE      GANDG+GAME+GR WIL+HG ATA+TSWGKMWLSVL +   +G   +P
Sbjct: 187 LGE------GANDGQGAMEKGRQWILDHGSATAITSWGKMWLSVLGVFEWSGNNPLP 237
Oxidosqualene cyclase converting oxidosqualene to cycloartenol.
Panax ginseng (taxid: 4054)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 8
>sp|Q8W3Z3|CAS2_BETPL Cycloartenol synthase 2 OS=Betula platyphylla GN=CASBPX2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase OS=Glycyrrhiza glabra GN=GgCAS1 PE=1 SV=1 Back     alignment and function description
>sp|Q2XPU6|CAS1_RICCO Cycloartenol synthase OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|E2IUB0|CASS_KALDA Cycloartenol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q6BE25|CAS1_CUCPE Cycloartenol synthase OS=Cucurbita pepo GN=CPX PE=1 SV=1 Back     alignment and function description
>sp|P38605|CAS1_ARATH Cycloartenol synthase OS=Arabidopsis thaliana GN=CAS1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SLP9|CAS1_LUFCY Cycloartenol synthase OS=Luffa cylindrica GN=CAS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z4|CAS1_BETPL Cycloartenol synthase OS=Betula platyphylla GN=CASBPX1 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z2X6|CAS_ORYSJ Cycloartenol synthase OS=Oryza sativa subsp. japonica GN=Os02g0139700 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
443299069 758 cycloartenol synthase protein [Azadirach 0.945 0.251 0.751 1e-79
225445640 760 PREDICTED: cycloartenol Synthase isoform 0.846 0.225 0.785 4e-76
161610599 761 cycloartenol synthase 1 [Polygala tenuif 0.945 0.250 0.710 4e-75
378926314 758 cycloartenol synthase [Eleutherococcus s 0.846 0.225 0.762 2e-74
225445642 766 PREDICTED: cycloartenol Synthase isoform 0.846 0.223 0.762 3e-74
75220213 758 RecName: Full=Cycloartenol Synthase gi|3 0.846 0.225 0.762 8e-74
75248720 757 RecName: Full=Cycloartenol synthase 2 gi 0.787 0.210 0.818 2e-73
164521140 758 cycloartenol synthase [Panax notoginseng 0.945 0.251 0.685 7e-73
46242746 757 cycloartenol synthase [Bupleurum kaoi] 0.945 0.252 0.680 3e-72
83016479 757 cycloartenol synthase [Lotus japonicus] 0.846 0.225 0.751 4e-72
>gi|443299069|gb|AGC82085.1| cycloartenol synthase protein [Azadirachta indica] Back     alignment and taxonomy information
 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/197 (75%), Positives = 166/197 (84%), Gaps = 6/197 (3%)

Query: 1   FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMP 60
           FAKENPG  VLPQVKVKD EDVTE++VTNTLRRA+SYHSTLQAHDGHWPGDYGGPMFLMP
Sbjct: 67  FAKENPGFTVLPQVKVKDAEDVTEEMVTNTLRRAVSYHSTLQAHDGHWPGDYGGPMFLMP 126

Query: 61  GLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRL 120
           GLVIT+SITGALNAVLSEEHKKEMCRY+YNHQNRDGGWGLHIEGPSTMFGSVL+YVTLRL
Sbjct: 127 GLVITMSITGALNAVLSEEHKKEMCRYLYNHQNRDGGWGLHIEGPSTMFGSVLSYVTLRL 186

Query: 121 LGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPL 180
           LGE      GANDG+ AMERGR WIL+HGGAT +TSWGKMWLSVL     +G   +P  +
Sbjct: 187 LGE------GANDGQEAMERGRKWILDHGGATTITSWGKMWLSVLGAFEWSGNNPLPPEI 240

Query: 181 RYGFFLIFYHSIQVSAH 197
               +++ +H  ++  H
Sbjct: 241 WLLPYMLPFHPGRMWCH 257

Source: Azadirachta indica

Species: Azadirachta indica

Genus: Azadirachta

Family: Meliaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445640|ref|XP_002264289.1| PREDICTED: cycloartenol Synthase isoform 1 [Vitis vinifera] gi|297736039|emb|CBI24077.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|161610599|gb|ABX75046.1| cycloartenol synthase 1 [Polygala tenuifolia] Back     alignment and taxonomy information
>gi|378926314|gb|AFC67276.1| cycloartenol synthase [Eleutherococcus senticosus] Back     alignment and taxonomy information
>gi|225445642|ref|XP_002264372.1| PREDICTED: cycloartenol Synthase isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75220213|sp|O82139.1|CAS1_PANGI RecName: Full=Cycloartenol Synthase gi|3688598|dbj|BAA33460.1| Cycloartenol Synthase [Panax ginseng] Back     alignment and taxonomy information
>gi|75248720|sp|Q8W3Z3.1|CAS2_BETPL RecName: Full=Cycloartenol synthase 2 gi|18147592|dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla] Back     alignment and taxonomy information
>gi|164521140|gb|ABY60426.1| cycloartenol synthase [Panax notoginseng] Back     alignment and taxonomy information
>gi|46242746|gb|AAS83469.1| cycloartenol synthase [Bupleurum kaoi] Back     alignment and taxonomy information
>gi|83016479|dbj|BAE53431.1| cycloartenol synthase [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
UNIPROTKB|Q8W3Z3 757 CASBPX2 "Cycloartenol synthase 0.846 0.225 0.774 5.3e-72
UNIPROTKB|O82139 758 OSCPNX1 "Cycloartenol Synthase 0.846 0.225 0.762 8.6e-72
UNIPROTKB|Q2XPU6 759 Q2XPU6 "Cycloartenol synthase" 0.846 0.225 0.740 6.3e-69
UNIPROTKB|E2IUB0 764 E2IUB0 "Cycloartenol synthase" 0.777 0.205 0.785 4.4e-68
UNIPROTKB|Q6BE25 766 CPX "Cycloartenol synthase" [C 0.846 0.223 0.728 4e-67
TAIR|locus:2060121 759 CAS1 "cycloartenol synthase 1" 0.846 0.225 0.717 1.3e-66
UNIPROTKB|Q8W3Z4 767 CASBPX1 "Cycloartenol synthase 0.841 0.221 0.683 1.8e-64
UNIPROTKB|Q6BE24 764 CPQ "Cucurbitadienol synthase" 0.787 0.208 0.621 2.1e-52
UNIPROTKB|Q8W3Z2 755 OSCBPW "Lupeol synthase" [Betu 0.841 0.225 0.554 1.9e-51
UNIPROTKB|E2IUA9 765 E2IUA9 "Lupeol synthase" [Kala 0.851 0.224 0.536 5.1e-49
UNIPROTKB|Q8W3Z3 CASBPX2 "Cycloartenol synthase 2" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 137/177 (77%), Positives = 152/177 (85%)

Query:     1 FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMP 60
             FAKENP   VLPQVKV +TEDVTE++VT  LRRA+S+HSTLQAHDGHW GDYGGPMFLMP
Sbjct:    67 FAKENPRGAVLPQVKVNETEDVTEEMVTRMLRRAISFHSTLQAHDGHWAGDYGGPMFLMP 126

Query:    61 GLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRL 120
             GLVITLSITGALN VLSEEHKKEMCRY+YNHQN+DGGWGLHIEGPSTMFG+VL+YVTLRL
Sbjct:   127 GLVITLSITGALNTVLSEEHKKEMCRYLYNHQNKDGGWGLHIEGPSTMFGTVLSYVTLRL 186

Query:   121 LGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIP 177
             LGEGANDG+GA      +ERGR WIL+HG ATA+ SWGKMWLSVL     +G   +P
Sbjct:   187 LGEGANDGQGA------IERGRKWILDHGSATAIISWGKMWLSVLGAFEWSGNNPLP 237
GO:0010686 "tetracyclic triterpenoid biosynthetic process" evidence=IDA
GO:0016871 "cycloartenol synthase activity" evidence=IDA
UNIPROTKB|O82139 OSCPNX1 "Cycloartenol Synthase" [Panax ginseng (taxid:4054)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU6 Q2XPU6 "Cycloartenol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUB0 E2IUB0 "Cycloartenol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q6BE25 CPX "Cycloartenol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
TAIR|locus:2060121 CAS1 "cycloartenol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z4 CASBPX1 "Cycloartenol synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|Q6BE24 CPQ "Cucurbitadienol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z2 OSCBPW "Lupeol synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P38605CAS1_ARATH5, ., 4, ., 9, 9, ., 80.75150.78710.2094yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
PLN02993 763 PLN02993, PLN02993, lupeol synthase 4e-62
cd02892 634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 2e-60
PLN03012 759 PLN03012, PLN03012, Camelliol C synthase 3e-59
TIGR01787 621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 4e-46
TIGR03463 634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 1e-25
TIGR01507 635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 1e-10
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 2e-09
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 5e-05
cd02889 348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 5e-04
TIGR01787621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 7e-04
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 8e-04
TIGR01507635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 0.002
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information 
 Score =  205 bits (522), Expect = 4e-62
 Identities = 92/177 (51%), Positives = 116/177 (65%), Gaps = 5/177 (2%)

Query: 1   FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMP 60
           F KE    +V+P VK+   E++T +  TN LRR +S+ S LQA DGHWPG+  GP+F +P
Sbjct: 69  FLKEAKFEQVIPPVKIDRGEEITYETATNALRRGVSFFSALQASDGHWPGEITGPLFFLP 128

Query: 61  GLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRL 120
            LV  L ITG L  V   EH+KEM R++Y HQN DGGWGLHIE  S MF +VLNY+ LR+
Sbjct: 129 PLVFCLYITGHLEEVFDAEHRKEMLRHIYCHQNEDGGWGLHIESKSVMFCTVLNYICLRM 188

Query: 121 LGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIP 177
           LGEG N GR       A +R R WIL+HGG T + SWGK WLS+L +   +G   +P
Sbjct: 189 LGEGPNGGR-----ENACKRARQWILDHGGVTYIPSWGKFWLSILGIYDWSGTNPMP 240

Length = 763
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
PLN03012 759 Camelliol C synthase 100.0
PLN02993 763 lupeol synthase 100.0
TIGR01507 635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
cd02892 634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
TIGR03463 634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
TIGR01787 621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
KOG0497 760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.81
PLN03012759 Camelliol C synthase 99.8
PLN02993763 lupeol synthase 99.78
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.72
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.7
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.66
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.64
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.58
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.56
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.43
cd02889 348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.41
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.4
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.39
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.37
COG1657 517 SqhC Squalene cyclase [Lipid metabolism] 99.36
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.32
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.29
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.25
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.21
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.11
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.08
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.07
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.97
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 98.96
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 98.96
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 98.92
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 98.89
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.87
PLN02710 439 farnesyltranstransferase subunit beta 98.83
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 98.83
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 98.81
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.8
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 98.74
KOG0366329 consensus Protein geranylgeranyltransferase type I 98.69
PLN02710 439 farnesyltranstransferase subunit beta 98.64
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.58
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.49
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.44
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.31
KOG0367347 consensus Protein geranylgeranyltransferase Type I 98.3
cd02891 282 A2M_like Proteins similar to alpha2-macroglobulin 98.09
KOG0365 423 consensus Beta subunit of farnesyltransferase [Pos 97.87
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 97.79
KOG0366 329 consensus Protein geranylgeranyltransferase type I 97.53
KOG0367347 consensus Protein geranylgeranyltransferase Type I 97.33
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 97.33
PLN02592 800 ent-copalyl diphosphate synthase 97.28
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 97.12
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 97.05
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.03
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 96.93
PLN02279 784 ent-kaur-16-ene synthase 96.78
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 95.87
COG1689 274 Uncharacterized protein conserved in archaea [Func 95.0
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 93.9
COG1689274 Uncharacterized protein conserved in archaea [Func 93.89
PLN02592 800 ent-copalyl diphosphate synthase 93.7
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 93.01
PLN02279 784 ent-kaur-16-ene synthase 90.58
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 87.34
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 83.8
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 81.64
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 80.96
>PLN03012 Camelliol C synthase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-60  Score=456.42  Aligned_cols=195  Identities=44%  Similarity=0.821  Sum_probs=188.4

Q ss_pred             CCCcCCCCCCCCcccccCCCCCChHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHH
Q 048279            1 FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEH   80 (202)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~   80 (202)
                      |+|||+|++++|+||++++++||.+.+.++++||++|+.++|.+||||++++++++|+++++|+++|++|..|+.+++++
T Consensus        69 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~~  148 (759)
T PLN03012         69 FLKEKKFEQRIAPAKVEDAEKITFEIATNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQDH  148 (759)
T ss_pred             HHhccCcccCCCcccCCCCcccchHHHHHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             HHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHH
Q 048279           81 KKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKM  160 (202)
Q Consensus        81 ~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~  160 (202)
                      .+++++||+++||+|||||+|++|+|+|++|++||+|||++|+++++|.++     +|+|||+||+++||++++|+||||
T Consensus       149 ~~ei~ryl~~~Qn~DGGWglh~eg~s~~~~Tv~~YvaLRllG~~~d~~~~~-----~m~rAR~~Il~~GGa~~~p~w~K~  223 (759)
T PLN03012        149 RKEILRYIYCHQKEDGGWGLHIEGHSTMFCTTLNYICMRILGEGPDGGHDN-----ACGRARDWILDHGGATYIPSWGKT  223 (759)
T ss_pred             HHHHHHHHHHhccCCCCeecccCCCCcchhHHHHHHHHHHcCCCCCCCCcH-----HHHHHHHHHHHcCCcccCchHHHH
Confidence            999999999999999999999999999999999999999999998854223     999999999999999999999999


Q ss_pred             HHHhccCccCCCCCCCCCchhcccCccccCcccchhhhcc
Q 048279          161 WLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCI  200 (202)
Q Consensus       161 ~Lal~G~~~W~~~~~lP~El~llP~~~p~~~~~~s~~~~~  200 (202)
                      |||++|+|||+++|+|||||||||.|+||||+|++||+|.
T Consensus       224 wLA~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~  263 (759)
T PLN03012        224 WLSILGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRL  263 (759)
T ss_pred             HHHHcCccccCCCCCCChhHHHccCcCCccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999996

>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
1w6j_A 732 Structure Of Human Osc In Complex With Ro 48-8071 L 2e-22
1w6k_A 732 Structure Of Human Osc In Complex With Lanosterol L 2e-22
3sqc_A 631 Squalene-Hopene Cyclase Length = 631 5e-06
1gsz_A 631 Crystal Structure Of A Squalene Cyclase In Complex 5e-06
2sqc_A 631 Squalene-Hopene Cyclase From Alicyclobacillus Acido 5e-06
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/150 (45%), Positives = 96/150 (64%), Gaps = 12/150 (8%)
Query: 35  LSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNR 94
           ++++  LQA DGHW GDYGGP+FL+PGL+IT  +       L   +++E+ RY+ + Q  
Sbjct: 81  MTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREEIVRYLRSVQLP 137
Query: 95  DGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATAL 154
           DGGWGLHIE  ST+FG+ LNYV+LR+LG G +D          + R R+ + + GGA A+
Sbjct: 138 DGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD--------PDLVRARNILHKKGGAVAI 189
Query: 155 TSWGKMWLSVLYLEHLNGLATIPFPLRYGF 184
            SWGK WL+VL +    GL T+ FP  + F
Sbjct: 190 PSWGKFWLAVLNVYSWEGLNTL-FPEMWLF 218
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631 Back     alignment and structure
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631 Back     alignment and structure
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 8e-47
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 5e-43
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
 Score =  161 bits (408), Expect = 8e-47
 Identities = 33/178 (18%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 20  EDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEE 79
           + V       TL RA+ Y  + Q  +G+W G     + +    V+   I   ++     +
Sbjct: 4   QLVEAPAYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVD----RD 59

Query: 80  HKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAME 139
             +++ RY+ + Q  DG W L+  GP  +  ++  YV L+ +G   ++          M+
Sbjct: 60  RMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDE--------EPMQ 111

Query: 140 RGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAH 197
           +   +I   GG  +   + +MWL+++       +  +P  + +    +  +  +  + 
Sbjct: 112 KALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSW 169
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 100.0
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.58
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.53
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.53
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.53
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.52
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.47
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.35
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.34
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.29
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.25
2wy7_A310 Complement C3D fragment; immune system, immune res 99.19
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.03
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 98.97
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 98.94
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.83
2wy7_A310 Complement C3D fragment; immune system, immune res 98.8
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 98.75
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.72
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.72
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.54
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.49
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 98.46
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.37
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 98.25
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.22
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.18
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 98.12
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.01
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 97.86
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 97.83
3prx_B 1642 Cobra venom factor; immune system, complement, imm 97.76
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 97.73
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 97.71
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.68
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 97.64
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.54
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 97.36
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 97.26
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 97.1
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 97.02
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 95.8
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 94.39
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 94.13
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 94.12
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 93.88
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 93.59
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 93.14
3pmm_A382 Putative cytoplasmic protein; structural genomics, 90.68
3prx_B 1642 Cobra venom factor; immune system, complement, imm 90.3
1lf6_A 684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 86.29
3pmm_A382 Putative cytoplasmic protein; structural genomics, 85.21
1nc5_A373 Hypothetical protein YTER; structural genomics, he 82.12
3k11_A445 Putative glycosyl hydrolase; structural genomics, 82.07
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-51  Score=395.40  Aligned_cols=166  Identities=40%  Similarity=0.706  Sum_probs=160.3

Q ss_pred             hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC
Q 048279           24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIE  103 (202)
Q Consensus        24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~  103 (202)
                      .+++.++|+++++||+++|.+||||++++++++|+++++|+++|++|.   .++++.++++++||+++||+|||||+|++
T Consensus        70 ~~~~~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~  146 (732)
T 1w6k_A           70 AHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHIE  146 (732)
T ss_dssp             CCSHHHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBTT
T ss_pred             cccHHHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhcCCCCCccCCcC
Confidence            456999999999999999999999999999999999999999999986   55667899999999999999999999999


Q ss_pred             CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhcc
Q 048279          104 GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYG  183 (202)
Q Consensus       104 g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~ll  183 (202)
                      ++|++++|++||+|||++|+++++|        +|+|||+||+++||++++|+|||||||++|+|+|+++|+||||||||
T Consensus       147 ~~s~~~~T~~~Y~aLrl~G~~~~~~--------~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~ll  218 (732)
T 1w6k_A          147 DKSTVFGTALNYVSLRILGVGPDDP--------DLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLF  218 (732)
T ss_dssp             SCCBHHHHHHHHHHHHHTTCCTTSH--------HHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGS
T ss_pred             CCccHHHHHHHHHHHHHcCCCCCcH--------HHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHc
Confidence            9999999999999999999999987        99999999999999999999999999999999999999999999999


Q ss_pred             cCccccCcccchhhhcc
Q 048279          184 FFLIFYHSIQVSAHLCI  200 (202)
Q Consensus       184 P~~~p~~~~~~s~~~~~  200 (202)
                      |.|+||||++++||+|.
T Consensus       219 P~~~p~~~~~~~~~~R~  235 (732)
T 1w6k_A          219 PDWAPAHPSTLWCHCRQ  235 (732)
T ss_dssp             CTTSTTCGGGSCHHHHH
T ss_pred             cCcCCCCHHHHHHHHHH
Confidence            99999999999999995
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d1w6ka2 279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 4e-46
d2sqca2 271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 3e-32
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 3e-05
d2h6fb1 401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 0.003
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 1e-04
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 0.001
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (383), Expect = 4e-46
 Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 11/144 (7%)

Query: 54  GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVL 113
           GP+FL+PGL+IT  +       L   +++E+ RY+ + Q  DGGWGLHIE  ST+FG+ L
Sbjct: 1   GPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTAL 57

Query: 114 NYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGL 173
           NYV+LR+LG G +           + R R+ + + GGA A+ SWGK WL+VL +    GL
Sbjct: 58  NYVSLRILGVGPD--------DPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGL 109

Query: 174 ATIPFPLRYGFFLIFYHSIQVSAH 197
            T+   +         H   +  H
Sbjct: 110 NTLFPEMWLFPDWAPAHPSTLWCH 133
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca2 271 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.75
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.75
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.54
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.31
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.29
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 99.16
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.0
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.96
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 98.89
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 98.87
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.73
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.47
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.43
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.32
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.06
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.04
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 97.96
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.88
d1hzfa_ 326 C4adg fragment of complement factor C4a {Human (Ho 97.2
d1c3da_ 294 C3D, a C3 fragment and ligand for complement recep 97.12
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 87.19
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 83.64
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 83.52
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-47  Score=326.95  Aligned_cols=136  Identities=41%  Similarity=0.698  Sum_probs=132.4

Q ss_pred             CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCC
Q 048279           54 GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGAND  133 (202)
Q Consensus        54 ~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~  133 (202)
                      |++|+++++|+++|++|.   +++++.++++++||+++||+|||||++.+++|++++|++||+|||++|+++++|     
T Consensus         1 gp~f~~p~~Vial~i~g~---~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p-----   72 (279)
T d1w6ka2           1 GPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDP-----   72 (279)
T ss_dssp             CBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSH-----
T ss_pred             CCchhhhHHHHHHhhcCC---CCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcH-----
Confidence            688999999999999996   678899999999999999999999999999999999999999999999999998     


Q ss_pred             chhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhcccCccccCcccchhhhcc
Q 048279          134 GRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCI  200 (202)
Q Consensus       134 ~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~llP~~~p~~~~~~s~~~~~  200 (202)
                         +|+||++||+++||++++++|||+|||++|+|||+++|+||||++|||+|+|||++++|||+|.
T Consensus        73 ---~m~rAr~wI~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~P~E~~lLP~w~P~~~~~~~~~~R~  136 (279)
T d1w6ka2          73 ---DLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQ  136 (279)
T ss_dssp             ---HHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHH
T ss_pred             ---HHHHHHHHHHhCCCccccchHHHHHHHHcCccccccCCCCCHHHHhccccCccchHHhhhhhhh
Confidence               9999999999999999999999999999999999999999999999999999999999999996
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure