Citrus Sinensis ID: 048288
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FXH6 | 753 | Putative cyclic nucleotid | yes | no | 0.991 | 0.964 | 0.637 | 0.0 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.982 | 0.974 | 0.619 | 0.0 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.975 | 0.974 | 0.618 | 0.0 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.991 | 0.971 | 0.605 | 0.0 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.971 | 0.991 | 0.601 | 0.0 | |
| O65717 | 716 | Cyclic nucleotide-gated i | no | no | 0.964 | 0.986 | 0.508 | 0.0 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.868 | 0.894 | 0.512 | 0.0 | |
| Q9SJA4 | 726 | Probable cyclic nucleotid | no | no | 0.870 | 0.877 | 0.5 | 0.0 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.908 | 0.955 | 0.487 | 0.0 | |
| Q8L7Z0 | 720 | Probable cyclic nucleotid | no | no | 0.859 | 0.873 | 0.502 | 0.0 |
| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function desciption |
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Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/756 (63%), Positives = 563/756 (74%), Gaps = 30/756 (3%)
Query: 1 HKSQYIGGQKEKFVRLDDLDSTLSMSSDKSGMNRRG-FNL-GVPFAGSGR-KNILKSLRF 57
+KSQYI G +EKFVRLDD DS +SMSS+ +GM +R F L V G G+ KN KS R
Sbjct: 2 YKSQYISGHREKFVRLDDTDSRVSMSSNATGMKKRSCFGLFNVTSRGGGKTKNTSKSFRE 61
Query: 58 GMNIGSRGLFRFGESLRSAAAKAVIPKDLKVSDKKIFDPQDRSLLLWNRLFVLSCIISVS 117
G+ IGS GL G+S S +AV P+DL+VS+KKIFDPQD++LLLWNR+FV+SCI++VS
Sbjct: 62 GVKIGSEGLKTIGKSFTSGVTRAVFPEDLRVSEKKIFDPQDKTLLLWNRMFVISCILAVS 121
Query: 118 IDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFG 177
+DP+FFYL + +C+ ++ KL TTLRT D+FYL M QF TAYIAPSSRVFG
Sbjct: 122 VDPLFFYLPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFG 181
Query: 178 RGELVVDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGY-VDVLSLKDAMQVNMLL 236
RGELV+DPA IA RYL +FIVDFL+VLP+PQ+ VW FL G DVL K A+ ++
Sbjct: 182 RGELVIDPAKIAERYLTRYFIVDFLAVLPLPQIAVWKFLHGSKGTDVLPTKQALLHIVIT 241
Query: 237 QFFPRFFRVFPLISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFC 296
Q+ PRF R PL SELKK AG FAE AGAAYYL WYM SHI GA WY+ +VE C
Sbjct: 242 QYIPRFVRFIPLTSELKKTAGAFAEGAWAGAAYYLLWYMLASHITGAFWYMLSVERNDTC 301
Query: 297 WKEICSETEPPTSGACEILLDCGSTGYQVFD-DWKRANKEIFDDKCNPNSLNSEFNFGIY 355
+ C P C +L CGS + DW ++ ++F + C+ S S+FN+GIY
Sbjct: 302 LRSACKVQPDPK--VCVQILYCGSKLMSSRETDWIKSVPDLFKNNCSAKSDESKFNYGIY 359
Query: 356 LQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLA 415
QA+ S I +S FFSKF YC W+GLQNLSTLGQGL+T+T P EV+FSIA+ VAGL+L A
Sbjct: 360 SQAVSSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFA 419
Query: 416 LLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDE 475
LLIGNMQTYL SLTVRLEEMRIKRRDSEQWMHHR LPQ+LRERVRRY+ +KWLETRGVDE
Sbjct: 420 LLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDE 479
Query: 476 ESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREG 535
E++VQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSL TE T +VREG
Sbjct: 480 ENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREG 539
Query: 536 DPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTR 595
DPV+EML IIRGRLESVTTDGGR+GF+NRGLLKEGDFCGEELLTWALDPK+ +NLP STR
Sbjct: 540 DPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTR 599
Query: 596 TVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRS 655
TV+AL EVEAFAL+AEELKFVA QFRRLHSRQVQ TFRFYSQQWRTWAACFIQA WRR
Sbjct: 600 TVKALTEVEAFALEAEELKFVASQFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRH- 658
Query: 656 IRKKQAEQRLKEVRERSDY----------------REVGNGDAPSRLRATVMASRFAANA 699
+R+K AE R KE E R + + S LR+TV ASRFAANA
Sbjct: 659 LRRKIAELRRKEEEEEEMDYEDDEYYDDNMGGMVTRSDSSVGSSSTLRSTVFASRFAANA 718
Query: 700 LRGHRRRASVPTSPPRRFLNLQKPSEPDF---NTDN 732
L+GH+ R T + +NL KPSEPDF +TD+
Sbjct: 719 LKGHKLRV---TESSKSLMNLTKPSEPDFEALDTDD 751
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Putative cyclic nucleotide-gated ion channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| 224075708 | 739 | predicted protein [Populus trichocarpa] | 0.984 | 0.975 | 0.646 | 0.0 | |
| 297850370 | 752 | hypothetical protein ARALYDRAFT_335228 [ | 0.984 | 0.958 | 0.648 | 0.0 | |
| 298204680 | 719 | unnamed protein product [Vitis vinifera] | 0.968 | 0.986 | 0.658 | 0.0 | |
| 225443164 | 743 | PREDICTED: putative cyclic nucleotide-ga | 0.983 | 0.969 | 0.649 | 0.0 | |
| 224115784 | 745 | predicted protein [Populus trichocarpa] | 0.979 | 0.962 | 0.636 | 0.0 | |
| 255543327 | 1005 | Cyclic nucleotide-gated ion channel, put | 0.986 | 0.718 | 0.631 | 0.0 | |
| 186478671 | 753 | cyclic nucleotide gated channel 8 [Arabi | 0.991 | 0.964 | 0.637 | 0.0 | |
| 225445859 | 743 | PREDICTED: probable cyclic nucleotide-ga | 0.987 | 0.973 | 0.634 | 0.0 | |
| 449459438 | 731 | PREDICTED: putative cyclic nucleotide-ga | 0.975 | 0.976 | 0.652 | 0.0 | |
| 10086501 | 746 | Putative cyclic nucleotide and calmoduli | 0.982 | 0.963 | 0.629 | 0.0 |
| >gi|224075708|ref|XP_002304729.1| predicted protein [Populus trichocarpa] gi|222842161|gb|EEE79708.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/744 (64%), Positives = 565/744 (75%), Gaps = 23/744 (3%)
Query: 1 HKSQYIGGQKEKFVRLDDLDSTLSMSSDKSGMNRRGFNL-GVPFAGSGRKNILKSLRFGM 59
+KSQYIGGQKEKFVRLDD D TLS++S+K GM + FNL G AG G+KN KSLR+G+
Sbjct: 6 YKSQYIGGQKEKFVRLDDFD-TLSVTSNKKGMKKLRFNLDGSNIAGHGKKNASKSLRYGV 64
Query: 60 NIGSRGLFRFGESLRSAAAKAVIPKDLKVSDKKIFDPQDRSLLLWNRLFVLSCIISVSID 119
GS G+ G SLR+ +AV P+DLKVS+K IFDPQD+SLLLWNRL ++SCI+SVS+D
Sbjct: 65 KRGSEGMLTIGRSLRTGVTRAVFPEDLKVSEKMIFDPQDKSLLLWNRLLIISCILSVSVD 124
Query: 120 PVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRG 179
P+FFYL F C+ M+ L + TT+RT D+FYLI M QF AY+APSSRVFGRG
Sbjct: 125 PLFFYLPVFNYRMACLGMDTNLAATITTMRTLLDVFYLIRMALQFRIAYVAPSSRVFGRG 184
Query: 180 ELVVDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGY--VDVLSLKDAMQVNMLLQ 237
ELV+DPA IA RYL +FIVDFLSVLP+PQ++VW +L+ +VL+ K A+ + + LQ
Sbjct: 185 ELVIDPAQIATRYLSRYFIVDFLSVLPLPQIVVWKYLNNKKKGSEVLATKQALLIIVFLQ 244
Query: 238 FFPRFFRVFPLISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCW 297
+ PRF R PL S+LKK AG FAES AGAAYYL WYM SHI GA WY+ +E CW
Sbjct: 245 YIPRFARFLPLGSDLKKTAGSFAESAFAGAAYYLLWYMLASHIAGAFWYLLAIERKDTCW 304
Query: 298 KEICSETEPPTSGACEI-LLDCGSTGYQVFDDWKRANKEIFDDKCN-PNSLNSEFNFGIY 355
+E C SG C I L CG+ F W+R + E+ +KC+ N FN+GIY
Sbjct: 305 REACI-----LSGKCNIDFLYCGNKALPGFHGWRRISDEVLGNKCSVSEDDNPRFNYGIY 359
Query: 356 LQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLA 415
QA+ S+I +S+NF SKFFYC W+GLQNLSTLGQGL T+T P EVIFSI + +AGL+L A
Sbjct: 360 FQAMSSDIVSSRNFVSKFFYCLWWGLQNLSTLGQGLLTSTYPLEVIFSILLAIAGLILFA 419
Query: 416 LLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDE 475
LLIGNMQTYL SLTVRLEEMRIKRRDSEQWMHHR LPQDLRERVRRY+ +KWLETRGVDE
Sbjct: 420 LLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDE 479
Query: 476 ESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREG 535
E+LVQSLPKDL+RDIKRHLCLNLVRRVPLFANMDE LLDAICERLKPSL TE T +VREG
Sbjct: 480 ETLVQSLPKDLKRDIKRHLCLNLVRRVPLFANMDETLLDAICERLKPSLYTEETYIVREG 539
Query: 536 DPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTR 595
DPVDEML IIRGRLESVTTDGGR+GF+NRG+LKEGDFCGEELLTWALDPKS NLP STR
Sbjct: 540 DPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSLGNLPSSTR 599
Query: 596 TVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRS 655
TVRAL EVEAFAL+AEELKFVA QFRRLHSRQ+QHTFRFYSQQWRTWA+CFIQA WRR S
Sbjct: 600 TVRALTEVEAFALEAEELKFVASQFRRLHSRQLQHTFRFYSQQWRTWASCFIQAAWRRYS 659
Query: 656 --------IRKKQAEQRLKEVRERSDYREVGNGDAPSRLRATVMASRFAANALRGHRRRA 707
+++ E+ + + + V D +RL AT++ASRFAANALRGHR R
Sbjct: 660 RRRAAELRRLEEEEEEVDYDEEDDDERALVEENDGSARLGATILASRFAANALRGHRLR- 718
Query: 708 SVPTSPPRRFLNLQKPSEPDFNTD 731
+ R + LQ+P EPDF+ +
Sbjct: 719 ---SLNSRALMKLQRPPEPDFSEE 739
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850370|ref|XP_002893066.1| hypothetical protein ARALYDRAFT_335228 [Arabidopsis lyrata subsp. lyrata] gi|297338908|gb|EFH69325.1| hypothetical protein ARALYDRAFT_335228 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|298204680|emb|CBI25178.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225443164|ref|XP_002264161.1| PREDICTED: putative cyclic nucleotide-gated ion channel 8-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224115784|ref|XP_002332056.1| predicted protein [Populus trichocarpa] gi|222831942|gb|EEE70419.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255543327|ref|XP_002512726.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547737|gb|EEF49229.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|186478671|ref|NP_173408.2| cyclic nucleotide gated channel 8 [Arabidopsis thaliana] gi|38503182|sp|Q9FXH6.2|CNGC8_ARATH RecName: Full=Putative cyclic nucleotide-gated ion channel 8; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 8 gi|332191775|gb|AEE29896.1| cyclic nucleotide gated channel 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|225445859|ref|XP_002278464.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Vitis vinifera] gi|297743648|emb|CBI36531.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449459438|ref|XP_004147453.1| PREDICTED: putative cyclic nucleotide-gated ion channel 8-like [Cucumis sativus] gi|449528215|ref|XP_004171101.1| PREDICTED: putative cyclic nucleotide-gated ion channel 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|10086501|gb|AAG12561.1|AC007797_21 Putative cyclic nucleotide and calmodulin-regulated ion channel [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.986 | 0.958 | 0.616 | 1.8e-236 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.983 | 0.975 | 0.598 | 9.6e-231 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.989 | 0.969 | 0.588 | 5.8e-224 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.975 | 0.974 | 0.592 | 1.2e-223 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.969 | 0.990 | 0.579 | 2e-214 | |
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.883 | 0.903 | 0.528 | 1.1e-181 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.801 | 0.808 | 0.519 | 4.8e-170 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.856 | 0.900 | 0.506 | 1.4e-167 | |
| TAIR|locus:2118816 | 720 | CNGC17 "cyclic nucleotide-gate | 0.881 | 0.895 | 0.494 | 4.8e-165 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.818 | 0.883 | 0.491 | 6.6e-162 |
| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2280 (807.7 bits), Expect = 1.8e-236, P = 1.8e-236
Identities = 462/749 (61%), Positives = 537/749 (71%)
Query: 1 HKSQYIGGQKEKFVRXXXXXXXXXXXXXKSGMNRRG-FNL-GVPFAGSGR-KNILKSLRF 57
+KSQYI G +EKFVR +GM +R F L V G G+ KN KS R
Sbjct: 2 YKSQYISGHREKFVRLDDTDSRVSMSSNATGMKKRSCFGLFNVTSRGGGKTKNTSKSFRE 61
Query: 58 GMNIGSRGLFRFGESLRSAAAKAVIPKDLKVSDKKIFDPQDRSLLLWNRLFVLSCIISVS 117
G+ IGS GL G+S S +AV P+DL+VS+KKIFDPQD++LLLWNR+FV+SCI++VS
Sbjct: 62 GVKIGSEGLKTIGKSFTSGVTRAVFPEDLRVSEKKIFDPQDKTLLLWNRMFVISCILAVS 121
Query: 118 IDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFG 177
+DP+FFYL + +C+ ++ KL TTLRT D+FYL M QF TAYIAPSSRVFG
Sbjct: 122 VDPLFFYLPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFG 181
Query: 178 RGELVVDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGY-VDVLSLKDAMQVNMLL 236
RGELV+DPA IA RYL +FIVDFL+VLP+PQ+ VW FL G DVL K A+ ++
Sbjct: 182 RGELVIDPAKIAERYLTRYFIVDFLAVLPLPQIAVWKFLHGSKGTDVLPTKQALLHIVIT 241
Query: 237 QFFPRFFRVFPLISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFC 296
Q+ PRF R PL SELKK AG FAE AGAAYYL WYM SHI GA WY+ +VE C
Sbjct: 242 QYIPRFVRFIPLTSELKKTAGAFAEGAWAGAAYYLLWYMLASHITGAFWYMLSVERNDTC 301
Query: 297 WKEICSETEPPTSGACEILLDCGSTGYQVFD-DWKRANKEIFDDKCNPNSLNSEFNFGIY 355
+ C P C +L CGS + DW ++ ++F + C+ S S+FN+GIY
Sbjct: 302 LRSACKVQPDPK--VCVQILYCGSKLMSSRETDWIKSVPDLFKNNCSAKSDESKFNYGIY 359
Query: 356 LQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSXXXXXXXXXXXX 415
QA+ S I +S FFSKF YC W+GLQNLSTLGQGL+T+T P EV+FS
Sbjct: 360 SQAVSSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFA 419
Query: 416 XXXXNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDE 475
NMQTYL SLTVRLEEMRIKRRDSEQWMHHR LPQ+LRERVRRY+ +KWLETRGVDE
Sbjct: 420 LLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDE 479
Query: 476 ESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREG 535
E++VQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSL TE T +VREG
Sbjct: 480 ENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREG 539
Query: 536 DPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTR 595
DPV+EML IIRGRLESVTTDGGR+GF+NRGLLKEGDFCGEELLTWALDPK+ +NLP STR
Sbjct: 540 DPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTR 599
Query: 596 TVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRS 655
TV+AL EVEAFAL+AEELKFVA QFRRLHSRQVQ TFRFYSQQWRTWAACFIQA WRR
Sbjct: 600 TVKALTEVEAFALEAEELKFVASQFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRH- 658
Query: 656 IRKKQAEQRLKEVRERS-DYRE-----------VGNGDAP----SRLRATVMASRFAANA 699
+R+K AE R KE E DY + V D+ S LR+TV ASRFAANA
Sbjct: 659 LRRKIAELRRKEEEEEEMDYEDDEYYDDNMGGMVTRSDSSVGSSSTLRSTVFASRFAANA 718
Query: 700 LRGHRRRASVPTSPPRRFLNLQKPSEPDF 728
L+GH+ R T + +NL KPSEPDF
Sbjct: 719 LKGHKLRV---TESSKSLMNLTKPSEPDF 744
|
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FXH6 | CNGC8_ARATH | No assigned EC number | 0.6375 | 0.9918 | 0.9641 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh1_pg.C_scaffold_1001793 | annotation not avaliable (752 aa) | ||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 732 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 2e-16 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 6e-10 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 3e-09 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 1e-08 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 5e-06 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 8e-05 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 5e-04 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-16
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 17/132 (12%)
Query: 504 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYN 563
LF+ +D+ L+ + + L+ G ++R+GDP D + +++ G +E D
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI- 59
Query: 564 RGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRL 623
G L GD GE L + TVRAL + E L FRRL
Sbjct: 60 VGFLGPGDLFGELAL---------LGNGPRSATVRALTDSELLVLPRS-------DFRRL 103
Query: 624 HSRQVQHTFRFY 635
+ R
Sbjct: 104 LQEYPELARRLL 115
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.61 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.49 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.48 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.45 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.41 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.4 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.39 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.39 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.36 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.35 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.32 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.28 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.25 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.25 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.2 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.18 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.13 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.08 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 99.05 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.04 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.79 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.79 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.57 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.42 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.18 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 97.84 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 97.82 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.77 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.63 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.58 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.12 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.12 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.9 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 96.31 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 95.69 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 95.14 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.79 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 94.71 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.13 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 93.79 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 89.31 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 88.97 | |
| KOG3614 | 1381 | consensus Ca2+/Mg2+-permeable cation channels (LTR | 84.62 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 81.04 | |
| KOG2301 | 1592 | consensus Voltage-gated Ca2+ channels, alpha1 subu | 80.29 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-119 Score=1023.48 Aligned_cols=576 Identities=49% Similarity=0.814 Sum_probs=516.3
Q ss_pred CCCCeeecCCChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccc
Q 048288 88 VSDKKIFDPQDRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTA 167 (732)
Q Consensus 88 ~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~ta 167 (732)
...++||+|+|++++.||++++++|+|+++++|++|||+..++...| +|..+...++++|+++|+||++||+++||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 34567999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eecCCCcccCCCeEeeCHHHHHHHHhhhhhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhh
Q 048288 168 YIAPSSRVFGRGELVVDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFP 247 (732)
Q Consensus 168 y~~~ss~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~ 247 (732)
|++++|+ ++|.||++||+||+++||++|++|++|+|||++|.++ ...........|..+.++||+|||+|+++
T Consensus 142 yv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~--~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~ 214 (727)
T KOG0498|consen 142 YVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI--GSTSLALESTILVGILLLQRLPRLRRVIP 214 (727)
T ss_pred EECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee--cccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 7999999999999999999999999999999999887 22223334447788889999999999999
Q ss_pred hHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCccccc
Q 048288 248 LISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFD 327 (732)
Q Consensus 248 l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~ 327 (732)
++.+++|..|++.+++|+++++++++|||++||.||+||+++++++..||+++
T Consensus 215 l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~--------------------------- 267 (727)
T KOG0498|consen 215 LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA--------------------------- 267 (727)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------------
Confidence 99999999999999999999999999999999999999999999999999753
Q ss_pred cccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHH
Q 048288 328 DWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVG 407 (732)
Q Consensus 328 ~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~ 407 (732)
+|+..... .-.|. +..|+||+|.+ +.+|++|+|||++||||+|||+.+|+|..|++|+|++|
T Consensus 268 tw~~~l~~--~~~~~----~~~~~fg~~s~------------~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~m 329 (727)
T KOG0498|consen 268 TWLGSLGR--LLSCY----NLSFTFGIYSL------------ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIM 329 (727)
T ss_pred cccccccc--ccccC----cccccccchhH------------HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHH
Confidence 33321100 11122 33478998754 55999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhH
Q 048288 408 VAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLR 487 (732)
Q Consensus 408 i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr 487 (732)
++|+++||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|..++|+||+++|++||++||
T Consensus 330 i~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR 409 (727)
T KOG0498|consen 330 LFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLR 409 (727)
T ss_pred HHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeec
Q 048288 488 RDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLL 567 (732)
Q Consensus 488 ~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l 567 (732)
+||++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|.+. ++..+
T Consensus 410 ~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~--~~~~L 487 (727)
T KOG0498|consen 410 RDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFF--VVAIL 487 (727)
T ss_pred HHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceE--EEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888544 48999
Q ss_pred CCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 048288 568 KEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFI 647 (732)
Q Consensus 568 ~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~ 647 (732)
++||+|||+.++|+++ .| +++||+|+|.|+++.|+++||++++++||++++++++|++|+|+++|++|++|++
T Consensus 488 ~~Gd~~GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~i 560 (727)
T KOG0498|consen 488 GPGDFFGEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFI 560 (727)
T ss_pred cCCCccchHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhH
Confidence 9999999887778764 33 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhccccccCCCCCCcchhhHHHHhHHHHHHhhh-ccccCCCCCCCCcccCCCCCCCCC
Q 048288 648 QATWRRRSIRKKQAEQRLKEVRERSDYREVGNGDAPSRLRATVMASRFAANALRG-HRRRASVPTSPPRRFLNLQKPSEP 726 (732)
Q Consensus 648 q~~~~~~~~R~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 726 (732)
|++|+++++| +....+..+++..+ ......+.+.+++++.+|++||+|++++ +.+. .+.++...++.++||.||
T Consensus 561 q~a~r~~~~~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p 635 (727)
T KOG0498|consen 561 QAAWRRHIKR-KGEEELALEEEESA--IRGDDRGSKSLLRAGILASRFAANGRPPLHTAA--SRGSSDCALLLLQKPADP 635 (727)
T ss_pred HHHHHHHHHh-hccchhhhhcchhh--hccccccchhhhhcccccccccccCCCcccccc--ccCccccccccCCCCCCC
Confidence 9999999999 66555555433221 1114556778999999999999999999 4332 233456678899999999
Q ss_pred CCCCC
Q 048288 727 DFNTD 731 (732)
Q Consensus 727 ~~~~~ 731 (732)
||+.+
T Consensus 636 ~f~~~ 640 (727)
T KOG0498|consen 636 DFSDA 640 (727)
T ss_pred Ccccc
Confidence 99864
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 732 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 6e-55 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 2e-10 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 2e-10 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 2e-10 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 2e-10 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 3e-10 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 3e-10 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 4e-10 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 1e-09 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 2e-09 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 3e-09 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 8e-09 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 1e-08 | ||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 2e-08 | ||
| 4f8a_A | 160 | Cyclic Nucleotide Binding-Homology Domain From Mous | 2e-05 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
| >pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1 Potassium Channel Length = 160 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 6e-74
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 17/213 (7%)
Query: 425 LTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPK 484
+ R + +D + ++ LP+ L +R+ W G+D L++ P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 485 DLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLI 544
+LR DI HL L+ ++PLF + L ++ +K S C G ++R+GD + + +
Sbjct: 64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 545 IRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVE 604
G +E + + +L +GD G + LT K + V+AL +
Sbjct: 123 CSGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169
Query: 605 AFALKAEELKFVAG---QFRRLHSRQVQHTFRF 634
+ + L+ V ++ + ++QH +
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 100.0 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.97 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.86 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.81 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.77 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.76 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.72 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.72 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.72 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.72 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.7 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.7 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.69 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.68 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.67 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.67 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.67 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.67 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.67 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.65 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.64 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.64 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.63 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.62 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.61 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.61 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.6 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.59 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.58 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.57 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.56 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.56 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.56 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.53 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.53 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.53 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.53 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.52 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.52 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.48 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.47 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.47 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.47 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.45 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.44 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.43 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.43 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.43 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.4 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.39 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.32 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.31 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.29 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.25 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.2 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.18 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.16 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.07 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.02 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 98.94 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 98.93 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.82 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.82 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.61 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.57 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.5 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.46 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.39 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.24 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.2 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.2 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.16 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.06 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 98.05 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.87 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 97.69 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 97.36 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=302.04 Aligned_cols=342 Identities=18% Similarity=0.208 Sum_probs=133.4
Q ss_pred ecCCChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCC
Q 048288 94 FDPQDRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSS 173 (732)
Q Consensus 94 i~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss 173 (732)
+.|+|+.. +.+.++++++++++.-+..+ |.. .......+..++.++-++|++|+++++..+ +.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t~-~~~---------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALTI-PDM---------SGRSRLALAALLAVIWGAYLLQLAATLLKR---RA- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHTS-SSC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHcc-cch---------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-
Confidence 35777754 45555656666655555421 211 111122344455555566899999988432 11
Q ss_pred cccCCCeEeeCHHHHHHHHhh-hhhHhHhhhc-cChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhhhHHH
Q 048288 174 RVFGRGELVVDPAMIARRYLR-HHFIVDFLSV-LPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFPLISE 251 (732)
Q Consensus 174 ~~~~~G~lV~d~~~Ia~rYlk-~~F~iDlls~-lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~ 251 (732)
. .+|.+ .|.++|++++ +|+..++ .+ +.. ..+++|++| ++|+.|..+..+.
T Consensus 66 ------~---------~~~~~~~~~i~Dl~~i~~p~~~~~----~~--~~~---~~r~lr~~R----~lrl~r~~~~~~~ 117 (355)
T 3beh_A 66 ------G---------VVRDRTPKIAIDVLAVLVPLAAFL----LD--GSP---DWSLYCAVW----LLKPLRDSTFFPV 117 (355)
T ss_dssp ------C---------SSCCCHHHHHHHHHHHHHHHHHHH----SC--CSG---GGGGGGGGG----GSHHHHTCSSHHH
T ss_pred ------c---------ceeccCcchHHHHHHHHHHHHHHH----hc--cch---hHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 12333 4899999999 6875432 11 111 223333332 4566666655555
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCccccccccc
Q 048288 252 LKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFDDWKR 331 (732)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~ 331 (732)
+.+... ......+..++++++..|+.||++|.+.- |.
T Consensus 118 l~~~l~----~~~~~l~~~~~~~~~~~~~~a~~~~~~e~--------------------------------------~~- 154 (355)
T 3beh_A 118 LGRVLA----NEARNLIGVTTLFGVVLFAVALAAYVIER--------------------------------------DI- 154 (355)
T ss_dssp HHHHHH----HTHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------------------------TT-
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------------------CC-
Confidence 544321 11222334455566788999999998751 00
Q ss_pred cccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHH
Q 048288 332 ANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGL 411 (732)
Q Consensus 332 ~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~ 411 (732)
+++.+..|..|+||+++||||+||||++|.+..|++++++++++|+
T Consensus 155 ----------------------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~ 200 (355)
T 3beh_A 155 ----------------------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGI 200 (355)
T ss_dssp ----------------------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHH
T ss_pred ----------------------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHH
Confidence 0122446889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHH
Q 048288 412 VLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIK 491 (732)
Q Consensus 412 ~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~ 491 (732)
+++++++|.+.+.++....+ +++.
T Consensus 201 ~~~~~~~~~i~~~~~~~~~~----------------------------~~~~---------------------------- 224 (355)
T 3beh_A 201 GIFGLWAGILATGFYQEVRR----------------------------GDFV---------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------------HHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------Hhhc----------------------------
Confidence 99999999998876532110 0000
Q ss_pred HHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCC
Q 048288 492 RHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGD 571 (732)
Q Consensus 492 ~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd 571 (732)
...+.++++|+|+++++++++.++..++.+.|+|||.|++|||+++++|||.+|.++++..+ + ..+++|+
T Consensus 225 --~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~ 294 (355)
T 3beh_A 225 --RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGA 294 (355)
T ss_dssp --HHHC--------------------------------------------------------------------------
T ss_pred --ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCC
Confidence 02456888999999999999999999999999999999999999999999999999997654 1 3789999
Q ss_pred eeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHH
Q 048288 572 FCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTF 632 (732)
Q Consensus 572 ~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~ 632 (732)
+|||.++ +.+.| ++.+++|.++|+++.+++++|.++++++|++....++...
T Consensus 295 ~fGe~~~---l~~~~------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 295 FFGEMAL---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp -------------------------------------------------------------
T ss_pred EEeehHH---hCCCC------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999987 66666 7899999999999999999999999999987665554433
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 732 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 1e-24 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 1e-14 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 1e-11 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 5e-09 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 3e-08 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 3e-08 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 4e-08 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 5e-06 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 7e-06 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 1e-05 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 2e-05 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 3e-05 | |
| d1p7ba2 | 116 | f.14.1.1 (A:36-151) Inward rectifier potassium cha | 5e-04 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 97.7 bits (242), Expect = 1e-24
Identities = 104/127 (81%), Positives = 112/127 (88%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
VRRVPLF NMDERLLDAICERLKP L TE + +VREGDPV+EML IIRGRLESVTTDGG
Sbjct: 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66
Query: 558 RTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVA 617
R+GFYNR LLKEGDFCG+ELLTWALDPKS +NLP STRTV+AL EVEAFAL A+ELKFVA
Sbjct: 67 RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVA 126
Query: 618 GQFRRLH 624
QFRR
Sbjct: 127 SQFRRSG 133
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.79 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.77 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.76 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.74 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.7 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.7 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.69 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.69 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.65 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.64 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.63 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.62 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.59 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.55 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.53 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.4 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.17 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.0 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.85 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.56 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 97.15 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 95.37 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 92.72 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 83.67 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.8e-29 Score=248.95 Aligned_cols=186 Identities=26% Similarity=0.434 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHHHHHHHHHHhcCcccCCcc
Q 048288 430 VRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMD 509 (732)
Q Consensus 430 ~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls 509 (732)
+..++|+++++.+++||+.+++|++|+.||++|++|.|.. ++.+++++++.||+.|+.++..+++.++++++|+|.+++
T Consensus 2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~ 80 (193)
T d1q3ea_ 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence 5678999999999999999999999999999999999974 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCC
Q 048288 510 ERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTN 589 (732)
Q Consensus 510 ~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~ 589 (732)
+.++..|+..++...|.||++|+++||+++.+|||.+|.|+++.. +++ ...+++|++|||.++ +.+.+
T Consensus 81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~-~~~-----~~~l~~G~~fGe~~~---~~~~~--- 148 (193)
T d1q3ea_ 81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNK-----EMKLSDGSYFGEICL---LTRGR--- 148 (193)
T ss_dssp HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC--CCC-----EEEECTTCEECHHHH---HHCSB---
T ss_pred HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecC-Ccc-----eeeeccceeeeeeec---cCCCc---
Confidence 999999999999999999999999999999999999999998754 333 457899999999988 55555
Q ss_pred CCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 048288 590 LPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHT 631 (732)
Q Consensus 590 ~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~ 631 (732)
++++++|.++|+++.|++++|.++++++|++..+..+.+
T Consensus 149 ---~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~ 187 (193)
T d1q3ea_ 149 ---RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA 187 (193)
T ss_dssp ---CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH
T ss_pred ---ccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 789999999999999999999999999997665554443
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|