Citrus Sinensis ID: 048289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920
Protein Sequence
MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQGARGRRN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccHHHHHcccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccEEcccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEccccccccccccEEEccccccccccHHccccccccEEEcccccccccccHHHHHHccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEccccccEEEccccccccccccEEEccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccccEEcccHHHHHcccccEEEcccccccccccHHHHccccccEEEcccccccEEccccccccccccccEEEcccccccccccHHHHHHHHHHHcccccccccccEEEccccEEEEEEEEEcccEEEEccccccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEEEHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccccHHcccccccccccccccccccccccEEEEccccccEEEEEEEcccccccEEccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcHHHcccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEEcccccccccccHHccccccEEEEEccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHcccccEEEccccccEEccccccccccccHEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccEEEEccccccccccccccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHcccccEEEEEccccccccccccHHcccccEEEEEcccccccccccHHHHHccccEEEEcccccccccccHHHHcccccEEEEEEccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccHHHHHHccEEEEEEcccccccccccHHHHHHHHHHEEEccccccccccccHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccHEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MLLQFKQLFsfetrqpsgcgrlqsdsysKMISwkeekdccswdgvtcdmmtghvtgldlscsrlhgsipsdsslfslphlqilnlafndfnysyispgftrfpnlahlnlsvssfsgqipaEISHLSKLVSldlsgnsqlgldTPVLKALVQNLNELQELVLNSVDmsyevpsfltnlssltsldlgncglqgsipenifrlpNLQNLILSYNKnltsvfpkvnwssplrfmdlygcnfmgsipaslgnlsqltyldlsynnfsghipstlsnlqqlrhldlsnnkftgqipcifanltqlsfldfsnnqlngpisssvSRLHSLVTIYLSynslngtipsglftspllesidlrnnqltgsiSNSISELVNLIDLSlssnnlsgnVELYMFAELKNLlgldlshnslslstllpvnssfpylsmlslsscnisefpdflRTQHRLQildlsdnqirggipnwiwnVGKDTLNHLNLshnfltgiellpwknlryldlrsnslkgsipflppslnfisvsnnklsgeiplsfcnmSSIFYVNlsnnslngmippclansslwFLDMRmnnfhgsipqtfskgsrltilnlndnqlegsvplslvncsflevldvgnnringtFPAWLGALSELQVLILRsnrfhgpitysvtrfpfpklrildlsnneftgvlptRYFQNFQAMmhgnnnsaeggnmYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIdlsgnkfqgriPEVVGKlnslkglnfshnkltglipyslenltqlesldlssnkvageipwqlTSLNFLQVLNLSqnqlvgpipqgkqfhtfssdsyngnmglcgfplsekcsndevtepiqdreeddtwslFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQGARGRRN
Flexible Loop (DISEMBL)
MLLQFKQLFsfetrqpsgcgrlQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVerkqsrntVIRMLIQGARGRRN
Low Complexity Region (SEG)
MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKAlvqnlnelqelvlnSVDMSYEVPsfltnlssltsldlGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVnlidlslssnnlsgnVELYMFAELKNllgldlshnslslstllPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTslnflqvlnlsqnqlvGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQGARGRRN
Disordered region (IsUnstruct)
**************************YSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLS******************DTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLI********
Disordered Region (DISOPRED)
MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMM***********MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFP**************************DWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQGARG***
Disordered Region (DISEMBL)
MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQGARGRRN
Disordered Region (DISPRO)
MLLQFKQLFSFETRQPSGCGRLQ*DSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKC******************SLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQG******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQGARGRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	920	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.831	0.903	0.350	1e-127
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.817	0.600	0.330	1e-82
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.8	0.589	0.324	8e-81
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.845	0.652	0.311	2e-76
Q9FL28	1173	LRR receptor-like serine/	no	no	0.757	0.594	0.309	6e-75
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.615	0.520	0.349	2e-67
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.710	0.593	0.311	1e-65
Q9LP24	1120	Probable leucine-rich rep	no	no	0.677	0.556	0.317	6e-64
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.769	0.623	0.310	3e-63
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.667	0.537	0.321	3e-63

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/881 (35%), Positives = 456/881 (51%), Gaps = 116/881 (13%)

Query: 33  WKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNY 92
           W +  DCC W+GVTC+  +G V  LD+  + L+  + ++SSLF L +L+           
Sbjct: 65  WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLR----------- 113

Query: 93  SYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQ 152
                         HL+L+  +  G+IP+ + +LS L  ++L  N  +G     + A + 
Sbjct: 114 --------------HLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVG----EIPASIG 155

Query: 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSY 212
           NLN+L+ L+L +  ++ E+PS L NLS L +L+L +  L G IP++I  L  L+NL L+ 
Sbjct: 156 NLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLAS 215

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
           N                        N +G IP+SLGNLS L +L L++N   G +P+++ 
Sbjct: 216 N------------------------NLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIG 251

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332
           NL +LR +   NN  +G IP  FANLT+LS    S+N         +S  H+L    +SY
Sbjct: 252 NLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSY 311

Query: 333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSIS-NSISELVNLIDLSLSSNNLSGNVELYM 391
           NS +G  P  L   P LESI L+ NQ TG I   + S    L DL L  N L G +   +
Sbjct: 312 NSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESI 371

Query: 392 FAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDL 451
            + L NL  LD+SHN+ +   + P                 IS+  + L        LDL
Sbjct: 372 -SRLLNLEELDISHNNFT-GAIPPT----------------ISKLVNLLH-------LDL 406

Query: 452 SDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKN--LRYLDLRSNSLKGSIPF 509
           S N + G +P  +W      LN + LSHN  +  E    +   +  LDL SNS +G IP+
Sbjct: 407 SKNNLEGEVPACLWR-----LNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPY 461

Query: 510 LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMR 567
           +                      C +SS+ +++LSNN  +G IP C+ N   S+  L++ 
Sbjct: 462 M---------------------ICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLG 500

Query: 568 MNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL 627
            NNF G++P  FSK + L  L+++ NQLEG  P SL+NC  LE+++V +N+I   FP+WL
Sbjct: 501 DNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL 560

Query: 628 GALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHG 687
            +L  L VL LRSN+F+GP+ +      F  LRI+D+S+N F+G LP  YF N++ M   
Sbjct: 561 ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTL 620

Query: 688 NNNSAEGGNMYINYGNEYYSAILTV-KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGK 746
                +    +  Y + YY  +  V KGV+M  E++   F  ID SGNK  G IPE +G 
Sbjct: 621 TEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGY 680

Query: 747 LNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN 806
           L  L+ LN S N  T +IP  L NLT+LE+LD+S NK++G+IP  L +L+FL  +N S N
Sbjct: 681 LKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHN 740

Query: 807 QLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWS---LFD 863
            L GP+P+G QF      S+  N GL G  L + C +     P     ED + +   +F+
Sbjct: 741 LLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFN 798

Query: 864 WKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSR 904
           W  A + YG G + GL +G+  + +   +W      RKQ +
Sbjct: 799 WVAAAIAYGPGVLCGLVIGH-FYTSHNHEWFTEKFGRKQHK 838

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  308 bits (790), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 279/844 (33%), Positives = 407/844 (48%), Gaps = 92/844 (10%)

Query: 40  CSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGF 99
           C+W GVTC      + GL+LS   L GSI                           SP  
Sbjct: 61  CNWTGVTCGGR--EIIGLNLSGLGLTGSI---------------------------SPSI 91

Query: 100 TRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE 159
            RF NL H++LS +   G IP  +S+LS  +      ++ L  D P   + + +L  L+ 
Sbjct: 92  GRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIP---SQLGSLVNLKS 148

Query: 160 LVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNK----- 214
           L L   +++  +P    NL +L  L L +C L G IP    RL  LQ LIL  N+     
Sbjct: 149 LKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPI 208

Query: 215 -----NLTSV------FPKVNWSSP--------LRFMDLYGCNFMGSIPASLGNLSQLTY 255
                N TS+      F ++N S P        L+ ++L   +F G IP+ LG+L  + Y
Sbjct: 209 PAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQY 268

Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
           L+L  N   G IP  L+ L  L+ LDLS+N  TG I   F  + QL FL  + N+L+G +
Sbjct: 269 LNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSL 328

Query: 316 SSSV-SRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI 374
             ++ S   SL  ++LS   L+G IP+ +     L+ +DL NN LTG I +S+ +LV L 
Sbjct: 329 PKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELT 388

Query: 375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSF-PYLSMLSLSSCNI 433
           +L L++N+L G +     + L NL    L HN+L     +P    F   L ++ L     
Sbjct: 389 NLYLNNNSLEGTLS-SSISNLTNLQEFTLYHNNLEGK--VPKEIGFLGKLEIMYLYENRF 445

Query: 434 S-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG---IELLP 489
           S E P  +    RLQ +D   N++ G IP+ I  + KD L  L+L  N L G     L  
Sbjct: 446 SGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL-KD-LTRLHLRENELVGNIPASLGN 503

Query: 490 WKNLRYLDLRSNSLKGSIP----FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSN 545
              +  +DL  N L GSIP    FL  +L    + NN L G +P S  N+ ++  +N S+
Sbjct: 504 CHQMTVIDLADNQLSGSIPSSFGFL-TALELFMIYNNSLQGNLPDSLINLKNLTRINFSS 562

Query: 546 NSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVN 605
           N  NG I P   +SS    D+  N F G IP    K + L  L L  NQ  G +P +   
Sbjct: 563 NKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGK 622

Query: 606 CSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLS 665
            S L +LD+  N ++G  P  LG   +L  + L +N   G I   + + P   L  L LS
Sbjct: 623 ISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPL--LGELKLS 680

Query: 666 NNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKV--- 722
           +N+F G LPT  F     +    + ++  G++    GN     +  +  +N+E  ++   
Sbjct: 681 SNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGN-----LQALNALNLEENQLSGP 735

Query: 723 -------LNIFTTIDLSGNKFQGRIPEVVGKLNSLK-GLNFSHNKLTGLIPYSLENLTQL 774
                  L+    + LS N   G IP  +G+L  L+  L+ S+N  TG IP ++  L +L
Sbjct: 736 LPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKL 795

Query: 775 ESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCG 834
           ESLDLS N++ GE+P Q+  +  L  LNLS N L G +   KQF  + +D++ GN GLCG
Sbjct: 796 ESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK--KQFSRWQADAFVGNAGLCG 853

Query: 835 FPLS 838
            PLS
Sbjct: 854 SPLS 857

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  302 bits (774), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 281/867 (32%), Positives = 407/867 (46%), Gaps = 131/867 (15%)

Query: 40  CSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGF 99
           CSW GVTCD                      ++ LF +  L +  L         ISP F
Sbjct: 58  CSWTGVTCD----------------------NTGLFRVIALNLTGLGLT----GSISPWF 91

Query: 100 TRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE 159
            RF NL HL+LS ++  G IP  +S+L+ L SL L  N   G     L +LV     ++ 
Sbjct: 92  GRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVN----IRS 147

Query: 160 LVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYN------ 213
           L +   ++  ++P  L NL +L  L L +C L G IP  + RL  +Q+LIL  N      
Sbjct: 148 LRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPI 207

Query: 214 ----------KNLTSVFPKVNWSSP--------LRFMDLYGCNFMGSIPASLGNLSQLTY 255
                        T+    +N + P        L  ++L   +  G IP+ LG +SQL Y
Sbjct: 208 PAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQY 267

Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
           L L  N   G IP +L++L  L+ LDLS N  TG+IP  F N++QL  L  +NN L+G +
Sbjct: 268 LSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSL 327

Query: 316 SSSV-SRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI 374
             S+ S   +L  + LS   L+G IP  L     L+ +DL NN L GSI  ++ ELV L 
Sbjct: 328 PKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELT 387

Query: 375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS 434
           DL L +N L G +   + + L NL  L L HN+L    L    S+   L +L L     S
Sbjct: 388 DLYLHNNTLEGTLSPSI-SNLTNLQWLVLYHNNLE-GKLPKEISALRKLEVLFLYENRFS 445

Query: 435 -EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG---IELLPW 490
            E P  +     L+++D+  N   G IP  I  + +  LN L+L  N L G     L   
Sbjct: 446 GEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKE--LNLLHLRQNELVGGLPASLGNC 503

Query: 491 KNLRYLDLRSNSLKGSIP----FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNN 546
             L  LDL  N L GSIP    FL   L  + + NN L G +P S  ++ ++  +NLS+N
Sbjct: 504 HQLNILDLADNQLSGSIPSSFGFLK-GLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHN 562

Query: 547 SLNGMIPPCLANSSLWFLDMRMNNFH------------------------GSIPQTFSKG 582
            LNG I P   +SS    D+  N F                         G IP T  K 
Sbjct: 563 RLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKI 622

Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
             L++L+++ N L G++PL LV C  L  +D+ NN ++G  P WLG LS+L  L L SN+
Sbjct: 623 RELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQ 682

Query: 643 FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAM--MHGNNNSAEG------ 694
           F   +   +  F   KL +L L  N   G +P +   N  A+  ++ + N   G      
Sbjct: 683 FVESLPTEL--FNCTKLLVLSLDGNSLNGSIP-QEIGNLGALNVLNLDKNQFSGSLPQAM 739

Query: 695 GNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLN 754
           G +   Y        LT + + +E+ ++ ++ + +DLS N F G IP  +G L+ L+ L+
Sbjct: 740 GKLSKLYELRLSRNSLTGE-IPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLD 798

Query: 755 FSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ 814
            SHN+LTG +P S+ ++  L  L++S N + G++                          
Sbjct: 799 LSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK------------------------- 833

Query: 815 GKQFHTFSSDSYNGNMGLCGFPLSEKC 841
            KQF  + +DS+ GN GLCG PLS +C
Sbjct: 834 -KQFSRWPADSFLGNTGLCGSPLS-RC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  287 bits (735), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 282/905 (31%), Positives = 411/905 (45%), Gaps = 127/905 (14%)

Query: 40  CSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGF 99
           C W GVTC  + G V  L L    L G IP +                            
Sbjct: 55  CDWVGVTC--LLGRVNSLSLPSLSLRGQIPKE---------------------------I 85

Query: 100 TRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE 159
           +   NL  L L+ + FSG+IP EI +L  L +LDLSGNS  GL    L  L+  L +L  
Sbjct: 86  SSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGL----LPRLLSELPQLLY 141

Query: 160 LVLNSVDMSYEVP-SFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTS 218
           L L+    S  +P SF  +L +L+SLD+ N  L G IP  I +L NL NL +  N     
Sbjct: 142 LDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQ 201

Query: 219 VFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLR 278
           +  ++   S L+      C F G +P  +  L  L  LDLSYN     IP +   L  L 
Sbjct: 202 IPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLS 261

Query: 279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
            L+L + +  G IP    N   L  L  S N L+GP+   +S +  L+T     N L+G+
Sbjct: 262 ILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEI-PLLTFSAERNQLSGS 320

Query: 339 IPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNL 398
           +PS +    +L+S+ L NN+ +G I + I +   L  LSL+SN LSG++   +     +L
Sbjct: 321 LPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGS-GSL 379

Query: 399 LGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRG 458
             +DLS N LS                       I E  D   +   L  L L++NQI G
Sbjct: 380 EAIDLSGNLLS---------------------GTIEEVFDGCSS---LGELLLTNNQING 415

Query: 459 GIPNWIWNVGKDTLNHLNLSHNFLTG-IELLPWKNLRYLDLRS--NSLKGSIPFL---PP 512
            IP  +W   K  L  L+L  N  TG I    WK+   ++  +  N L+G +P       
Sbjct: 416 SIPEDLW---KLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAA 472

Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNF 571
           SL  + +S+N+L+GEIP     ++S+  +NL+ N   G IP  L + +SL  LD+  NN 
Sbjct: 473 SLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNL 532

Query: 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVP---------LSLVNCSFLE---VLDVGNNRI 619
            G IP   +  ++L  L L+ N L GS+P         + + + SFL+   + D+  NR+
Sbjct: 533 QGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRL 592

Query: 620 NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ 679
           +G  P  LG    L  + L +N   G I  S++R     L ILDLS N  TG +P     
Sbjct: 593 SGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLT--NLTILDLSGNALTGSIPKEM-- 648

Query: 680 NFQAMMHGNNNSAEGGNMYINYGN----EYYSAILTVKGVNMEMEKV----------LNI 725
                  GN+   +G N+  N  N    E +  + ++  +N+   K+          L  
Sbjct: 649 -------GNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKE 701

Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
            T +DLS N   G +   +  +  L GL    NK TG IP  L NLTQLE LD+S N ++
Sbjct: 702 LTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLS 761

Query: 786 GEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDE 845
           GEIP ++  L  L+ LNL++N L G +P        S    +GN  LCG  +   C    
Sbjct: 762 GEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCK--- 818

Query: 846 VTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRN 905
               I+  +    W +           +G ++G ++   VF     +W   M +R + R+
Sbjct: 819 ----IEGTKLRSAWGI-----------AGLMLGFTIIVFVFVFSLRRW--AMTKRVKQRD 861

Query: 906 TVIRM 910
              RM
Sbjct: 862 DPERM 866

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  283 bits (723), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 254/822 (30%), Positives = 364/822 (44%), Gaps = 125/822 (15%)

Query: 40  CSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGF 99
           C+W G+TCD  TGHV  + L   +L G                            +SP  
Sbjct: 61  CNWTGITCDS-TGHVVSVSLLEKQLEG---------------------------VLSPAI 92

Query: 100 TRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE 159
                L  L+L+ +SF+G+IPAEI  L+                            EL +
Sbjct: 93  ANLTYLQVLDLTSNSFTGKIPAEIGKLT----------------------------ELNQ 124

Query: 160 LVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSV 219
           L+L     S  +PS +  L ++  LDL N  L G +PE I +  +L  +   YN NLT  
Sbjct: 125 LILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYN-NLTGK 183

Query: 220 FPKVNWS-SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLR 278
            P+       L+     G +  GSIP S+G L+ LT LDLS N  +G IP    NL  L+
Sbjct: 184 IPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQ 243

Query: 279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
            L L+ N   G IP    N + L  L+  +NQL G I + +  L  L  + +  N L  +
Sbjct: 244 SLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSS 303

Query: 339 IPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNL 398
           IPS LF    L  + L  N L G IS  I  L +L  L+L SNN +G         L+NL
Sbjct: 304 IPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFP-QSITNLRNL 362

Query: 399 LGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRG 458
             L +  N++S                         E P  L     L+ L   DN + G
Sbjct: 363 TVLTVGFNNIS------------------------GELPADLGLLTNLRNLSAHDNLLTG 398

Query: 459 GIPNWIWNVGKDTLNHLNLSHNFLTGIEL---LPWKNLRYLDLRSNSLKGSIP---FLPP 512
            IP+ I N     L  L+LSHN +TG E+       NL ++ +  N   G IP   F   
Sbjct: 399 PIPSSISNC--TGLKLLDLSHNQMTG-EIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCS 455

Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNF 571
           +L  +SV++N L+G +      +  +  + +S NSL G IP  + N   L  L +  N F
Sbjct: 456 NLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGF 515

Query: 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALS 631
            G IP+  S  + L  L +  N LEG +P  + +   L VLD+ NN+ +G  PA    L 
Sbjct: 516 TGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLE 575

Query: 632 ELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNS 691
            L  L L+ N+F+G I  S+       L   D+S+N  TG +P     + + M       
Sbjct: 576 SLTYLSLQGNKFNGSIPASLKSLSL--LNTFDISDNLLTGTIPGELLASLKNM------- 626

Query: 692 AEGGNMYINYGNEYYSAILTVKGVNMEMEKVL----NIFT--------------TIDLSG 733
                +Y+N+ N   +  +  +   +EM + +    N+F+              T+D S 
Sbjct: 627 ----QLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQ 682

Query: 734 NKFQGRIP-EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQL 792
           N   G IP EV   ++ +  LN S N  +G IP S  N+T L SLDLSSN + GEIP  L
Sbjct: 683 NNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESL 742

Query: 793 TSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCG 834
            +L+ L+ L L+ N L G +P+   F   ++    GN  LCG
Sbjct: 743 ANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  258 bits (658), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 211/603 (34%), Positives = 314/603 (52%), Gaps = 37/603 (6%)

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
           ++L      G + + +G L  L  LDLS N+FSG +PSTL N   L +LDLSNN F+G++
Sbjct: 81  LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEV 140

Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLES 351
           P IF +L  L+FL    N L+G I +SV  L  LV + +SYN+L+GTIP  L     LE 
Sbjct: 141 PDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEY 200

Query: 352 IDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLS 411
           + L NN+L GS+  S+  L NL +L +S+N+L G +  +  +  K L+ LDLS N     
Sbjct: 201 LALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLH-FGSSNCKKLVSLDLSFNDFQ-G 258

Query: 412 TLLPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD 470
            + P   +   L  L +  CN++   P  +    ++ ++DLSDN++ G IP  + N    
Sbjct: 259 GVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNC--S 316

Query: 471 TLNHLNLSHNFLTGIELLP----WKNLRYLDLRSNSLKGSIP---FLPPSLNFISVSNNK 523
           +L  L L+ N L G E+ P     K L+ L+L  N L G IP   +   SL  + V NN 
Sbjct: 317 SLETLKLNDNQLQG-EIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNT 375

Query: 524 LSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA-NSSLWFLDMRMNNFHGSIPQTFSKG 582
           L+GE+P+    +  +  + L NN   G IP  L  N SL  +D+  N F G IP     G
Sbjct: 376 LTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHG 435

Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
            +L +  L  NQL G +P S+  C  LE + + +N+++G  P +  +LS L  + L SN 
Sbjct: 436 QKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLS-LSYVNLGSNS 494

Query: 643 FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQA--MMHGNNNSAEG------ 694
           F G I  S+       L  +DLS N+ TG++P     N Q+  +++ ++N  EG      
Sbjct: 495 FEGSIPRSLGS--CKNLLTIDLSQNKLTGLIPPE-LGNLQSLGLLNLSHNYLEGPLPSQL 551

Query: 695 ----GNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL 750
                 +Y + G+       ++ G      +     +T+ LS N F G IP+ + +L+ L
Sbjct: 552 SGCARLLYFDVGSN------SLNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRL 605

Query: 751 KGLNFSHNKLTGLIPYSLENLTQLE-SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV 809
             L  + N   G IP S+  L  L   LDLS+N   GEIP  L +L  L+ LN+S N+L 
Sbjct: 606 SDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLT 665

Query: 810 GPI 812
           GP+
Sbjct: 666 GPL 668

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  252 bits (643), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 233/748 (31%), Positives = 347/748 (46%), Gaps = 94/748 (12%)

Query: 115 FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
           ++G + +  S   +++SL+LS     G  +P +  LV     L++L L+   +S ++P  
Sbjct: 61  WTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVH----LKQLDLSYNGLSGKIPKE 116

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           + N SSL  L L N    G IP  I +L +L+NLI+ YN  ++                 
Sbjct: 117 IGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLII-YNNRIS----------------- 158

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294
                 GS+P  +GNL  L+ L    NN SG +P ++ NL++L       N  +G +P  
Sbjct: 159 ------GSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSE 212

Query: 295 FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDL 354
                 L  L  + NQL+G +   +  L  L  + L  N  +G IP  +     LE++ L
Sbjct: 213 IGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLAL 272

Query: 355 RNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
             NQL G I   + +L +L  L L  N L+G +   +   L   + +D S N+L+     
Sbjct: 273 YKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREI-GNLSYAIEIDFSENALT----- 326

Query: 415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNH 474
                               E P  L     L++L L +NQ+ G IP  +  +    L+ 
Sbjct: 327 -------------------GEIPLELGNIEGLELLYLFENQLTGTIPVELSTL--KNLSK 365

Query: 475 LNLSHNFLTGIELLPWKNLR---YLDLRSNSLKGSIPFLPPSLNFIS------VSNNKLS 525
           L+LS N LTG   L ++ LR    L L  NSL G+IP   P L + S      +S+N LS
Sbjct: 366 LDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIP---PKLGWYSDLWVLDMSDNHLS 422

Query: 526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSR 584
           G IP   C  S++  +NL  N+L+G IP  +    +L  L +  NN  G  P    K   
Sbjct: 423 GRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVN 482

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
           +T + L  N+  GS+P  + NCS L+ L + +N   G  P  +G LS+L  L + SN+  
Sbjct: 483 VTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLT 542

Query: 645 GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNE 704
           G +   +  F    L+ LD+  N F+G LP+     +Q  +   +N+   G + +  GN 
Sbjct: 543 GEVPSEI--FNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGN- 599

Query: 705 YYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK-GLNFSHNKLTGL 763
                             L+  T + + GN F G IP  +G L  L+  LN S+NKLTG 
Sbjct: 600 ------------------LSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGE 641

Query: 764 IPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823
           IP  L NL  LE L L++N ++GEIP    +L+ L   N S N L GPIP        S 
Sbjct: 642 IPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISM 698

Query: 824 DSYNGNMGLCGFPLSEKCSNDEVTEPIQ 851
            S+ GN GLCG PL++ C   +   P Q
Sbjct: 699 SSFIGNEGLCGPPLNQ-CIQTQPFAPSQ 725

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  246 bits (628), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 227/716 (31%), Positives = 338/716 (47%), Gaps = 93/716 (12%)

Query: 180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF 239
           S+  L+L N G++G+  +                      FP ++ S+ L ++DL     
Sbjct: 78  SIEELNLTNTGIEGTFQD----------------------FPFISLSN-LAYVDLSMNLL 114

Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
            G+IP   GNLS+L Y DLS N+ +G I  +L NL+ L  L L  N  T  IP    N+ 
Sbjct: 115 SGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNME 174

Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
            ++ L  S N+L G I SS+  L +L+ +YL  N L G IP  L     +  + L  N+L
Sbjct: 175 SMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKL 234

Query: 360 TGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN-S 418
           TGSI +++  L NL+ L L  N L+G +   +   ++++  L LS N L+ S  +P +  
Sbjct: 235 TGSIPSTLGNLKNLMVLYLYENYLTGVIPPEI-GNMESMTNLALSQNKLTGS--IPSSLG 291

Query: 419 SFPYLSMLSLSSCNISE-FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNL 477
           +   L++LSL    ++   P  L     +  L+LS+N++ G IP+ + N+   T+  L L
Sbjct: 292 NLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTI--LYL 349

Query: 478 SHNFLTGI---ELLPWKNLRYLDLRSNSLKGSIP---------------------FLPPS 513
             N+LTG+   EL   +++  L L +N L GSIP                      +P  
Sbjct: 350 YENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQE 409

Query: 514 LNF------ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDM 566
           L        + +S NKL+G +P SF N + +  + L  N L+G IPP +ANSS L  L +
Sbjct: 410 LGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLIL 469

Query: 567 RMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAW 626
             NNF G  P+T  KG +L  ++L+ N LEG +P SL +C  L       N+  G     
Sbjct: 470 DTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEA 529

Query: 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686
            G   +L  +    N+FHG I+ +  + P  KL  L +SNN  TG +PT  +   Q +  
Sbjct: 530 FGIYPDLNFIDFSHNKFHGEISSNWEKSP--KLGALIMSNNNITGAIPTEIWNMTQLVEL 587

Query: 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME-----KVLNIFTTIDLSGNKFQGRIP 741
             + +   G +    GN    + L + G  +          L    ++DLS N F   IP
Sbjct: 588 DLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIP 647

Query: 742 EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVL 801
           +       L  +N S NK  G IP  L  LTQL  LDLS N++ GEIP QL+SL  L  L
Sbjct: 648 QTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKL 706

Query: 802 NLSQN------------------------QLVGPIPQGKQFHTFSSDSYNGNMGLC 833
           +LS N                        +L GP+P    F   ++D+   N+GLC
Sbjct: 707 DLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  244 bits (622), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 239/770 (31%), Positives = 368/770 (47%), Gaps = 62/770 (8%)

Query: 155 NELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNK 214
           + + E+ L  + +S  +   ++ L  L  L L +    G+IP +           L+Y  
Sbjct: 68  HRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTS-----------LAYCT 116

Query: 215 NLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNL 274
            L SVF + N             +  G +P ++ NL+ L   +++ N  SG IP  L + 
Sbjct: 117 RLLSVFLQYN-------------SLSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPS- 162

Query: 275 QQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS 334
             L+ LD+S+N F+GQIP   ANLTQL  L+ S NQL G I +S+  L SL  ++L +N 
Sbjct: 163 -SLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNL 221

Query: 335 LNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAE 394
           L GT+PS +     L  +    N++ G I  +   L  L  LSLS+NN SG V   +F  
Sbjct: 222 LQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN 281

Query: 395 LKNLLGLDLSHNSLSLSTLLPVNSS--FPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDL 451
             +L  + L  N+ S   + P  ++     L +L L    IS  FP +L     L+ LD+
Sbjct: 282 -TSLTIVQLGFNAFS-DIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDV 339

Query: 452 SDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG---IELLPWKNLRYLDLRSNSLKGSIP 508
           S N   G IP  I N+ +  L  L L++N LTG   +E+    +L  LD   NSLKG IP
Sbjct: 340 SGNLFSGEIPPDIGNLKR--LEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIP 397

Query: 509 -FLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIP-PCLANSSLWFL 564
            FL    +L  +S+  N  SG +P S  N+  +  +NL  N+LNG  P   +A +SL  L
Sbjct: 398 EFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSEL 457

Query: 565 DMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFP 624
           D+  N F G++P + S  S L+ LNL+ N   G +P S+ N   L  LD+    ++G  P
Sbjct: 458 DLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVP 517

Query: 625 AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAM 684
             L  L  +QV+ L+ N F G +    +      LR ++LS+N F+G +P  +      +
Sbjct: 518 VELSGLPNVQVIALQGNNFSGVVPEGFSS--LVSLRYVNLSSNSFSGEIPQTFGFLRLLV 575

Query: 685 MHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKV------LNIFTTIDLSGNKFQG 738
               +++   G++    GN     +L ++  N  M  +      L     +DL  N   G
Sbjct: 576 SLSLSDNHISGSIPPEIGNCSALEVLELRS-NRLMGHIPADLSRLPRLKVLDLGQNNLSG 634

Query: 739 RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNF- 797
            IP  + + +SL  L+  HN L+G+IP S   L+ L  +DLS N + GEIP  L  ++  
Sbjct: 635 EIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSN 694

Query: 798 LQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDD 857
           L   N+S N L G IP        ++  ++GN  LCG PL+ +C +       + R+   
Sbjct: 695 LVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESSTAEGKKKKRKM-- 752

Query: 858 TWSLFDWKMAVMGYGSGFVIGLSMGYSVFA-TGWPKWIARMV---ERKQS 903
                   M VM     F++ L   + V+    W K + +     E+K+S
Sbjct: 753 ------ILMIVMAAIGAFLLSLFCCFYVYTLLKWRKKLKQQSTTGEKKRS 796

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  244 bits (622), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 225/699 (32%), Positives = 326/699 (46%), Gaps = 85/699 (12%)

Query: 181 LTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF 239
           +T ++L   GL G +  N F  L +L  L LS N  + +    +     L  ++L     
Sbjct: 80  VTEINLSGSGLSGIVSFNAFTSLDSLSVLKLSENFFVLNSTSLLLLPLTLTHLELSSSGL 139

Query: 240 MGSIPASL-GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
           +G++P +     S L  + LSYNNF+G +P+ L                       F + 
Sbjct: 140 IGTLPENFFSKYSNLISITLSYNNFTGKLPNDL-----------------------FLSS 176

Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQ 358
            +L  LD S N + GPIS     L S V+  ++Y                   +D   N 
Sbjct: 177 KKLQTLDLSYNNITGPISGLTIPLSSCVS--MTY-------------------LDFSGNS 215

Query: 359 LTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNS 418
           ++G IS+S+    NL  L+LS NN  G +    F ELK L  LDLSHN L+      +  
Sbjct: 216 ISGYISDSLINCTNLKSLNLSYNNFDGQIP-KSFGELKLLQSLDLSHNRLTGWIPPEIGD 274

Query: 419 SFPYLSMLSLSSCNISE-FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNL 477
           +   L  L LS  N +   P+ L +   LQ LDLS+N I G  PN I      +L  L L
Sbjct: 275 TCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILR-SFGSLQILLL 333

Query: 478 SHNFLTG---IELLPWKNLRYLDLRSNSLKGSIP--FLP--PSLNFISVSNNKLSGEIPL 530
           S+N ++G     +   K+LR  D  SN   G IP    P   SL  + + +N ++GEIP 
Sbjct: 334 SNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPP 393

Query: 531 SFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
           +    S +  ++LS N LNG IPP + N   L       NN  G IP    K   L  L 
Sbjct: 394 AISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLI 453

Query: 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY 649
           LN+NQL G +P    NCS +E +   +NR+ G  P   G LS L VL L +N F G I  
Sbjct: 454 LNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPP 513

Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQ-------------NFQAMMHGNNNSAEGGN 696
            + +     L  LDL+ N  TG +P R  +             N  A +    NS +G  
Sbjct: 514 ELGKCT--TLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVG 571

Query: 697 MYINYGNEYYSAILTVKGVN------MEMEKVLNIFTT------IDLSGNKFQGRIPEVV 744
             + +       +L +  +       M    +L++FT       +DLS N+ +G+IP+ +
Sbjct: 572 GLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEI 631

Query: 745 GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLS 804
           G++ +L+ L  SHN+L+G IP+++  L  L   D S N++ G+IP   ++L+FL  ++LS
Sbjct: 632 GEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLS 691

Query: 805 QNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSN 843
            N+L GPIPQ  Q  T  +  Y  N GLCG PL E C N
Sbjct: 692 NNELTGPIPQRGQLSTLPATQYANNPGLCGVPLPE-CKN 729

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	920
225462116	1001	PREDICTED: receptor-like protein 12-like	0.965	0.887	0.497	0.0
224116970	921	predicted protein [Populus trichocarpa]	0.946	0.945	0.530	0.0
359485824	973	PREDICTED: receptor-like protein 12-like	0.982	0.929	0.488	0.0
225459979	979	PREDICTED: receptor-like protein 12-like	0.957	0.899	0.492	0.0
225455498	980	PREDICTED: receptor-like protein 12-like	0.958	0.9	0.491	0.0
359493539	1001	PREDICTED: receptor-like protein 12-like	0.958	0.881	0.483	0.0
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.959	0.896	0.478	0.0
359493544	978	PREDICTED: receptor-like protein 12-like	0.960	0.903	0.492	0.0
147793123	951	hypothetical protein VITISV_032542 [Viti	0.926	0.895	0.497	0.0
357493403	1015	Receptor-like protein kinase [Medicago t	0.973	0.882	0.457	0.0

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/994 (49%), Positives = 622/994 (62%), Gaps = 106/994 (10%)

Query: 2   LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSC 61
           LL+ KQLFS +    S        S++K  +WKE  +CCSWDGVTC+ +TG + GLDLSC
Sbjct: 36  LLRLKQLFSIDV-SASSSDDCNLASFAKTDTWKEGTNCCSWDGVTCNRVTGLIIGLDLSC 94

Query: 62  SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA 121
           S L+G+I S+SSLF LPHL+ LNLAFNDFN S IS  F +F  + HLNLS S FSG I  
Sbjct: 95  SGLYGTIDSNSSLFLLPHLRRLNLAFNDFNKSSISAKFGQFRRMTHLNLSFSGFSGVIAP 154

Query: 122 EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
           EISHLS LVSLDLS  S LGL+T    AL +NL +LQ+L L  +++S  +P  L NLSSL
Sbjct: 155 EISHLSNLVSLDLSIYSGLGLETSSFIALARNLTKLQKLHLRGINVSSILPISLLNLSSL 214

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCN--- 238
            S+DL +C L G  P++  +LPNL+ L L  N +L+  FPK N S+ +  +DL   N   
Sbjct: 215 RSMDLSSCQLYGRFPDDDLQLPNLKVLKLKGNHDLSGNFPKFNESNSMLLLDLSSTNFSG 274

Query: 239 ---------------------FMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
                                F G +P+S+G+L  L  LDLS+ NFSG IPS L NL Q+
Sbjct: 275 ELPSSIGILKSLESLDLSSTKFSGELPSSIGSLKSLESLDLSHCNFSGSIPSVLGNLTQI 334

Query: 278 RHLDLSNNKFTGQIPCIF------------------------ANLTQLSFLDFSNNQLNG 313
            HLDLS N+F G+I  +F                         NLT+LSFLD SNN L G
Sbjct: 335 THLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSFRGQFIASLDNLTELSFLDLSNNNLEG 394

Query: 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT----------------------SPLLES 351
            I S V  L SL  I+LS N LNGTIPS LF+                      SP LES
Sbjct: 395 IIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLPSLIRLDLSHNKLNGHIDEFQSPSLES 454

Query: 352 IDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLS 411
           IDL +N+L G + +SI ELVNL  L LSSNNL G VE  MF  L+NL+ LDLS+N L+LS
Sbjct: 455 IDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGGIVETDMFMNLENLVYLDLSYNILTLS 514

Query: 412 TLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDT 471
                N + P+L  L LSSCNISEFP FL +Q  L+ LDLS+N+I G +P W WN+G +T
Sbjct: 515 NYSHSNCALPFLETLLLSSCNISEFPRFLCSQEVLEFLDLSNNKIYGQLPKWAWNMGTET 574

Query: 472 LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLS 531
           L++ NLS N LT  E  PWKN+ +LDL SN L+G +P L   +++ISV            
Sbjct: 575 LSYFNLSQNLLTRFERFPWKNMLFLDLHSNLLQGPLPSLICEMSYISV------------ 622

Query: 532 FCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
                    ++ SNN+L+G+IP CL N   SL  LD+RMN  HG+IP+TFSKG+ +  L 
Sbjct: 623 ---------LDFSNNNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLG 673

Query: 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY 649
            N NQLEG +P SL+NC  L+VLD+GNNRIN TFP WL  L ELQVLILRSNRFHG I+ 
Sbjct: 674 FNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISG 733

Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY--- 706
           S  +FPFPKLRI+DLS N+F+G LP  Y +NF+AMM+   +      M + Y  EYY   
Sbjct: 734 SNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTED-----KMKLKYMGEYYYRD 788

Query: 707 SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPY 766
           S + T+KG + E   +L+ FTTIDLS N+FQG I + +G L+SL+ LN SHN LTG IP 
Sbjct: 789 SIMGTIKGFDFEF-VILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPS 847

Query: 767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSY 826
           SL NL  LESLDLSSNK++G IP +LTSL FL+VLNLS+N L G IP+G QF TF+++SY
Sbjct: 848 SLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSY 907

Query: 827 NGNMGLCGFPLSEKCSNDEVTEPIQDRE-EDDTWSLFDWKMAVMGYGSGFVIGLSMGYSV 885
           +GN+GLCG PLS+KC  DE  +P ++ E E DT   FDWK+ +MGYG G V+GL MG  V
Sbjct: 908 SGNIGLCGLPLSKKCVVDEAPQPPKEEEVESDTG--FDWKVILMGYGCGLVVGLFMGCLV 965

Query: 886 FATGWPKWIARMVERKQSRNTVIRMLIQGARGRR 919
           F T  PKW   M+E  + +            G R
Sbjct: 966 FLTRKPKWFVTMIEGDRHKKVRRSTRSTRRHGAR 999

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/915 (53%), Positives = 606/915 (66%), Gaps = 44/915 (4%)

Query: 30  MISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFND 89
           M SWK   DCCSWDGV C  +TGHV  LDLSCS L G++ S+SSLF L HL+ LNLAFN 
Sbjct: 1   MASWKSGTDCCSWDGVACHGVTGHVIALDLSCSGLRGNLSSNSSLFHLSHLRRLNLAFNY 60

Query: 90  FNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKA 149
           FN S I P F  F +L HLNLS + FSGQ+P EISHLSKL+SLDLS N  L L+ P +K 
Sbjct: 61  FNRSSIPPEFGMFSSLTHLNLSSTWFSGQVPTEISHLSKLISLDLSLNEPLILEAPAMKM 120

Query: 150 LVQNLNELQELVLNSVDMS-YEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNL 208
           +VQNL  ++E+ L+ ++MS  ++ S +   SSLTSL L  CGLQG  PENIF LPNLQ L
Sbjct: 121 IVQNLTLVREIFLDYINMSSVDLGSLMNLSSSLTSLSLNLCGLQGQFPENIFHLPNLQLL 180

Query: 209 ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP 268
            L  N +L    P  NWSS L  + L   +F G +P  +GNL  +  LDL    F G +P
Sbjct: 181 SLLLNSDLYGRLPVSNWSSSLELLKLGSTSFSGGLPEIIGNLDSIKVLDLGNCAFYGSVP 240

Query: 269 STLSNLQQLRHLDLSNNKFTGQIPCIFANL------------------------TQLSFL 304
           ++L NLQQL  LDLSNN +TGQIP +F NL                        T+L  L
Sbjct: 241 ASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKLNSLSLQVGNFSGMLPSSVFNLTELLRL 300

Query: 305 DFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGS-- 362
           D S NQL G +   +  L ++  + LSYN L+GTIPS LF  P L   +L NN LTG   
Sbjct: 301 DLSQNQLEGTLPDHICGLDNVTYLDLSYNLLSGTIPSCLFGLPSLVWFNLNNNHLTGELG 360

Query: 363 ---------ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTL 413
                    I  SISELVNL +  +SSNNLSG V+L +F+ +KNL GLDLSHNSLS+ T 
Sbjct: 361 EHCNKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNMKNLWGLDLSHNSLSVVTN 420

Query: 414 LPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLN 473
              NS++P    L+LSSCNI EFPDFL+ Q++L  L LS N+I G IP W+   G  +L 
Sbjct: 421 NNRNSTWPQFYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNRIHGEIPKWLSAKGMQSLQ 480

Query: 474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFC 533
           +L+LSHNFLT +  LP  +L+YLDL SN L+   P LP S+  + ++NNKL+GEIP   C
Sbjct: 481 YLDLSHNFLTIVNELP-PSLQYLDLTSNLLQQPFPILPQSMYILLIANNKLTGEIPPWIC 539

Query: 534 NMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLN 591
           N+++   +NLSNNSL+G IP CL N  + L  L++R N+FHG+IP +F++G+++  L+LN
Sbjct: 540 NITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLDLN 599

Query: 592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651
            N+LEGS+PLSL NC  LEVLD+GNN IN +FP WL  L +LQVL+LRSNR HG I    
Sbjct: 600 GNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKLQVLVLRSNRLHGSIGNPT 659

Query: 652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY--SAI 709
              PF  LRI+DLS+NEF G+LPT+Y  NFQAM   +    +    YI  G  YY  S +
Sbjct: 660 AISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKVDG-EVKATPKYI--GEIYYQDSIV 716

Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLE 769
           LT+KG  + ME++L IFTTIDLS N+F+G+IP+ VG L+SL  LN S N +TG IP SL 
Sbjct: 717 LTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGLLSSLIVLNISRNSVTGQIPSSLG 776

Query: 770 NLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGN 829
           NLT LESLDLSSN + G IP QLT L FL VLNLS NQLVGPIP G QF TF +DSY GN
Sbjct: 777 NLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGSQFDTFQNDSYVGN 836

Query: 830 MGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATG 889
           + LCGFPLS KCS D   +P   +E++D  SLF+WK A++GYG G VIGLS+GY VF TG
Sbjct: 837 LRLCGFPLSVKCSGDVAPQPPPFQEKEDPASLFNWKFAMIGYGCGLVIGLSVGYIVFTTG 896

Query: 890 WPKWIARMVERKQSR 904
            P+W  R VE +Q +
Sbjct: 897 KPQWFVRKVEVEQKK 911

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/942 (48%), Positives = 595/942 (63%), Gaps = 38/942 (4%)

Query: 2   LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWK-------EEKDCCSWDGVTCDMMTGHV 54
           LLQFKQ F  +    SG       +Y K+  WK       E  DCCSWDGV CD  TGHV
Sbjct: 44  LLQFKQSFLID-EHASG----NPSAYPKVAMWKSHGEGEREGSDCCSWDGVECDRETGHV 98

Query: 55  TGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS 114
            GL L+ S L+GSI S S+LFSL HLQ L+L+ NDFNYS I  G  +   L  L+LS S 
Sbjct: 99  IGLHLASSCLYGSINSSSTLFSLVHLQRLDLSDNDFNYSEIPFGVGQLSRLRSLDLSFSG 158

Query: 115 FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
           FSGQIP+E+  LSKLV LDLS N +L L  P L+ LVQNL  L++L L+ V++S  +P  
Sbjct: 159 FSGQIPSELLALSKLVFLDLSANPKLQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPYE 218

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           L +LSSLTSL LG CGL G  P  IF+LP+LQ L +  N +L S  P+   +SPL+ +DL
Sbjct: 219 LASLSSLTSLFLGECGLHGEFPMKIFQLPSLQYLTVRDNLDLISYLPEFQETSPLKMLDL 278

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294
            G +F G +P S+G L  LT LD+S  NF+G +PS+L +L QL +LDLSNN F+GQIP  
Sbjct: 279 AGTSFSGELPTSIGRLGSLTELDISSCNFTGSVPSSLGHLTQLYYLDLSNNHFSGQIPSS 338

Query: 295 FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDL 354
            ANLTQL +L  S N  N    S + +   L  +YL+  +L G IP  L     L  + L
Sbjct: 339 MANLTQLIYLSLSWNDFNVGTLSWLGQQTKLTYLYLNQINLIGEIPFSLVNMSQLNILSL 398

Query: 355 RNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
            +NQL+G I +S+ ELVNL  L L SN L+G VEL + ++LKNL+ L LS N LS  +  
Sbjct: 399 SDNQLSGQIPSSLFELVNLQGLYLLSNYLNGTVELQLLSKLKNLIYLQLSDNRLSFLSYT 458

Query: 415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNH 474
             N++ P    L L SCN++EFPDFL+ QH L+I+ LS+N+I G IP W+WN+ K+TL  
Sbjct: 459 RTNATLPKFKHLGLGSCNLTEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISKETLVT 518

Query: 475 LNLSHNFLTGIE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPL 530
           L LS NFLTG +    +LPW  L  L L SN L+G +P  PPS     VS NKL+GEI  
Sbjct: 519 LELSENFLTGFDQRPFVLPWSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISP 578

Query: 531 SFCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
             CNM+S+  ++LS+N+L+G IP CLAN   SL+ LD+  N+  G IP+  +    L ++
Sbjct: 579 LICNMTSLELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVI 638

Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT 648
           +L DNQ +G +P SLVNC+ LE L +GNN+IN  FP WLGAL +LQVLILRSNRFHG I 
Sbjct: 639 DLGDNQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIG 698

Query: 649 YSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA------------EGGN 696
              T F FPKLRI+DLS+NEF G LP+ YFQN+ AM   +  S             +   
Sbjct: 699 SWHTNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQISPMIDLKNNV 758

Query: 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFS 756
           M   Y    YS  +T KG+    E++L+ F  ID SGN F+G+IP  +G L  +  LN  
Sbjct: 759 MITGY---MYSMTMTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLG 815

Query: 757 HNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGK 816
            N LTG IP SL NLTQLESLDLS NK++GEIPWQLT L FL+  N+S N L G IPQGK
Sbjct: 816 GNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGK 875

Query: 817 QFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFV 876
           QF TF + S++GN+GLCG PLS +C + E   P     +  + + FDWK+ +MGYGSG +
Sbjct: 876 QFATFENASFDGNLGLCGSPLSRECGSSEALPPTSSSSKQGSTTKFDWKIVLMGYGSGLL 935

Query: 877 IGLSMGYSVFATGWP-KWIARMVERKQSRNTVIRMLIQGARG 917
           IG+S+GY +  T W  +W  + + ++Q + T  R   +G RG
Sbjct: 936 IGVSIGYCL--TSWKHEWFVKTIGKRQRKWT--RKEGRGQRG 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/977 (49%), Positives = 605/977 (61%), Gaps = 96/977 (9%)

Query: 2   LLQFKQLFS-FETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLS 60
           LL  ++ FS  +     GC      SY K  SWK+  DCCSWDGVTCD +TGHV GLDLS
Sbjct: 39  LLHLRKSFSVIDNSSFWGCDYYGVTSYPKTESWKKGSDCCSWDGVTCDRVTGHVIGLDLS 98

Query: 61  CSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIP 120
           CS L+G+I S+S+LF  PHL+ LNLAFNDFN S +S  F RF +L HLNLS S FSG I 
Sbjct: 99  CSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSSLTHLNLSESLFSGLIS 158

Query: 121 AEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSS 180
            EISHL+ LVSLDLSGN           +L+ NL +LQ+L L  + +S   P+ L N SS
Sbjct: 159 PEISHLANLVSLDLSGNGA-EFAPHGFNSLLLNLTKLQKLHLGGISISSVFPNSLLNQSS 217

Query: 181 LTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPK--------------VNWS 226
           L SLDL +CGL GS  ++   LP L+ L L  N  L   FP+               N+S
Sbjct: 218 LISLDLSDCGLHGSFHDHDIHLPKLEVLNLWGNNALNGNFPRFSENNSLLELVLASTNFS 277

Query: 227 SPL----------RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ 276
             L          + +DL  C F+GSIP SL NL Q+T L+L  N+FSG IP+  +NL+ 
Sbjct: 278 GELPASIGNLKSLKTLDLSICQFLGSIPTSLENLKQITSLNLIGNHFSGKIPNIFNNLRN 337

Query: 277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLH--SLVTIYLSYNS 334
           L  L LSNN F+G  P    NLT L  LDFSNNQL G I S V+     SL  + L YN 
Sbjct: 338 LISLGLSNNNFSGHFPPSIGNLTNLYELDFSNNQLEGVIHSHVNEFSFSSLSYVNLGYNL 397

Query: 335 LNGTIPSGLFTSPLLESIDLRNNQLTGSIS----------------------NSISELVN 372
            NGTIPS L+T   L  +DL +N+LTG I                       +SI +LVN
Sbjct: 398 FNGTIPSWLYTLSSLVVLDLSHNKLTGHIDEFQFDSLENIYLNMNELHGPIPSSIFKLVN 457

Query: 373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN 432
           L  L LSSNNLS  +E   F  L+NL+ LDLS+N L L+T    NS  P           
Sbjct: 458 LRYLYLSSNNLSEVLETNKFGNLRNLIELDLSNNMLLLTTSGNSNSILP----------- 506

Query: 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKN 492
                        ++ LDLS+N+I G    W WN+G DTL +LNLS+N ++G ++LPWKN
Sbjct: 507 ------------NIESLDLSNNKISGV---WSWNMGNDTLWYLNLSYNSISGFKMLPWKN 551

Query: 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI 552
           +  LDL SN L+G +P  P S  F SVS+NKLSGEI    C  SS+  ++LS+N+L+G +
Sbjct: 552 IGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEILDLSDNNLSGRL 611

Query: 553 PPCLANSSLWF--LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLE 610
           P CL N S +   L++R N FHG+IPQTF KG+ +  L+ NDNQL+G VP SL+ C  LE
Sbjct: 612 PHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFNDNQLDGLVPRSLIICRKLE 671

Query: 611 VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
           VLD+GNN+IN TFP WLG LS+LQVL+LRSN FHG I +S  + PF  LRI+DL++N+F 
Sbjct: 672 VLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGHIRHSKIKSPFMSLRIIDLAHNDFE 731

Query: 671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINY-GNEYY--SAILTVKGVNMEMEKVLNIFT 727
           G LP  Y ++ +A+M+ N      GNM   Y GN YY  S ++T+KG+ +E  K+LN FT
Sbjct: 732 GDLPELYLRSLKAIMNVNE-----GNMTRKYMGNNYYQDSIMVTIKGLEIEFVKILNTFT 786

Query: 728 TIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE 787
           TIDLS NKFQG IP+ +G LNSL+GLN SHN L G IP  L NL  LESLDLSSNK+ G 
Sbjct: 787 TIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLGGHIPSPLGNLKSLESLDLSSNKLIGR 846

Query: 788 IPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVT 847
           IP +LTSL FL+VLNLSQN L G IP+G QF TF +DSYN N GLCGFPLS+KC+ DE  
Sbjct: 847 IPQELTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENSGLCGFPLSKKCTADETL 906

Query: 848 EPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVER------K 901
           EP ++   +     FDWK+ +MGYG G VIGLS+G  VF TG P+W+ RMVE        
Sbjct: 907 EPSKEANTEFDGG-FDWKITLMGYGCGLVIGLSLGCLVFLTGKPEWLTRMVEENIHKTIT 965

Query: 902 QSRNTVIRMLIQGARGR 918
           +S+ +  R   +GAR +
Sbjct: 966 RSKRSTRR---KGARRK 979

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/972 (49%), Positives = 598/972 (61%), Gaps = 90/972 (9%)

Query: 2   LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSC 61
           LL  KQ FS        C  +   SY K  SWK+  DCCSWDGVTCD +TGHV  LDLSC
Sbjct: 40  LLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSC 99

Query: 62  SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA 121
           S L G+I S+++LF LPH+Q LNLAFN+F+ S IS GF RF +L HLNLS S FSG I  
Sbjct: 100 SWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNLSDSGFSGLISP 159

Query: 122 EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
           EISHLS LVSLDLS NS          +LVQNL +LQ+L L  + +S   P+ L N SSL
Sbjct: 160 EISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISISSVFPNSLLNRSSL 219

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWS--------------- 226
            SL L +CGL G  P++   LP L+ L L  N +L+  FP+ N +               
Sbjct: 220 ISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSLTELYLSSKNFSG 279

Query: 227 ---------SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
                      L+ +DL  C F GSIPASL NL+Q+T L+L+ N+FSG IP+  +NL+ L
Sbjct: 280 ELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSGKIPNIFNNLRNL 339

Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSR--LHSLVTIYLSYNSL 335
             + LSNN F+GQ P    NLT L +LDFS NQL G I S V+     SL  +YL YN  
Sbjct: 340 ISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFSSLSYVYLGYNLF 399

Query: 336 NGTIPSGLFT----------------------SPLLESIDLRNNQLTGSISNSISELVNL 373
           NG IPS L+T                         LE IDL  N+L G I +SI +LVNL
Sbjct: 400 NGIIPSWLYTLLSLVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELHGPIPSSIFKLVNL 459

Query: 374 IDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI 433
             L LSSNNLSG +E   F +L+NL+ L LS+N LSL+T    N   P            
Sbjct: 460 RSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCILP------------ 507

Query: 434 SEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNL 493
                      +++ +DLS+N+I G    W WN+GKDTL +LNLS+N ++G E+LPWKN+
Sbjct: 508 -----------KIESIDLSNNKISGV---WSWNMGKDTLWYLNLSYNSISGFEMLPWKNV 553

Query: 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIP 553
             LDL SN L+G++P  P S  F SV +NKLSG I    C +SSI  ++LS+N+L+GM+P
Sbjct: 554 GILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVLDLSSNNLSGMLP 613

Query: 554 PCLANSS--LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611
            CL N S  L  L++R N FHG+IPQ+F KG+ +  L+ NDN+LEG VP SL+ C  LEV
Sbjct: 614 HCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVPRSLIICRKLEV 673

Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
           L++GNN+IN TFP WLG L ELQVL+LRSN FHG I  S  + PF  LRI+DL++N+F G
Sbjct: 674 LNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRIIDLAHNDFEG 733

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINY-GNEYY--SAILTVKGVNMEMEKVLNIFTT 728
            LP  Y ++ +  M     + +  NM   Y G  YY  S ++T+KG+ +E  K+LN F T
Sbjct: 734 DLPEMYLRSLKVTM-----NVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEFVKILNAFAT 788

Query: 729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI 788
           IDLS NKFQG IP+ +G LNSL+GLN SHN LTG IP S  NL  LESLDLSSNK+ G I
Sbjct: 789 IDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSSNKLIGSI 848

Query: 789 PWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTE 848
           P QLTSL FL+VLNLSQN L G IP+G QF TF +DSYNGN  LCGFPLS+KC  DE  E
Sbjct: 849 PQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKCIADETPE 908

Query: 849 PIQDREEDDTWS-LFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVE---RKQSR 904
           P   +EED  +   FDWK  ++GYG G V GLS+G  +F  G PKW   ++E    K+ R
Sbjct: 909 P--SKEEDAEFENKFDWKFMLVGYGCGLVYGLSLGGIIFLIGKPKWFVSIIEENIHKKIR 966

Query: 905 NTVIRMLIQGAR 916
                   QGAR
Sbjct: 967 RCKRSTCRQGAR 978

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/994 (48%), Positives = 600/994 (60%), Gaps = 112/994 (11%)

Query: 2   LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSC 61
           LL  KQ FS +      C      SY K  SWK+  DCCSWDGVTCD +TGH+ GLDLSC
Sbjct: 39  LLHLKQSFSIDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWVTGHIIGLDLSC 98

Query: 62  SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA 121
           SRL G+I S+++LF L HLQ LNLAFN+FN S IS GF RF +L H NLS S FSG I  
Sbjct: 99  SRLFGTIHSNTTLFLLLHLQRLNLAFNNFNGSSISAGFGRFSSLTHFNLSYSGFSGLIAP 158

Query: 122 EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
           EISHLS LVSLDLS N           +LVQNL +LQ+L L  + +S   P+ L N SSL
Sbjct: 159 EISHLSTLVSLDLSENYGAEFAPHGFNSLVQNLTKLQKLHLRGISISSVFPNSLLNRSSL 218

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWS--------------- 226
            S+DL  CGL G  P++   LP L+ L L  N +L+  FP+ + +               
Sbjct: 219 ISIDLSGCGLHGRFPDHDIHLPKLEVLDLWRNDDLSGNFPRFSENNSLMELDLSFTNLSG 278

Query: 227 ---------SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
                      L+ +DL GC F G I  S+GNL  L  LDLS   FSG IP+++ NL+ L
Sbjct: 279 ELPASIGNLKSLQTLDLSGCEFSGFIHTSIGNLKSLQTLDLSGCEFSGFIPTSIGNLKSL 338

Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL------- 330
           + LDLS+ +F+G IP    NL  L  LD SN +  G I +S+  L SL ++YL       
Sbjct: 339 QTLDLSDCEFSGSIPTSIGNLKSLQTLDLSNCEFLGSIPTSIGNLKSLRSLYLFSNNFSG 398

Query: 331 -----------------SYNSLNGTIPSGLFTSP----------------------LLES 351
                            S N  NGTIPS L+T P                       LE 
Sbjct: 399 QLPPSIGNLTNLQNLRFSNNLFNGTIPSQLYTLPSLVNLDLSHKKLTGHIGEFQFDSLEY 458

Query: 352 IDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLS 411
           IDL  N+L G I +SI +L NL  L L SNNLSG +E   F +L+NL  L LS+N LSL 
Sbjct: 459 IDLSMNELHGPIPSSIFKLANLEFLYLYSNNLSGVLETSNFGKLRNLTLLVLSNNMLSLI 518

Query: 412 TLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDT 471
           T    NS  PY                       ++ LDLS+N+I G    W WN+GKDT
Sbjct: 519 TSGNSNSILPY-----------------------IERLDLSNNKISG---IWSWNMGKDT 552

Query: 472 LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLS 531
           L +LNLS+N ++G E+LPWKN+  LDL SN L+G +P  P S  F SVS+NKLSGEI   
Sbjct: 553 LLYLNLSYNIISGFEMLPWKNMHILDLHSNLLQGPLPIPPNSTFFFSVSHNKLSGEISPL 612

Query: 532 FCNMSSIFYVNLSNNSLNGMIPPCLANSS--LWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
            C +SS+  ++LS+N+L+GM+P CL N S  L  L++R N FHG+IPQTF KG+ +  L+
Sbjct: 613 ICKVSSMGVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLD 672

Query: 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY 649
            NDNQLEG VP SL+    LEVLD+GNN+IN TFP WL  L ELQVL+LRSN FHG I +
Sbjct: 673 FNDNQLEGLVPRSLIIYRKLEVLDLGNNKINDTFPHWLRTLPELQVLVLRSNSFHGHIGF 732

Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY--- 706
           S  + PF  LRI+DL++N+F G LP  Y ++ +A+M+      + GNM   Y  EYY   
Sbjct: 733 SKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMN-----IDEGNMARKYMGEYYYQD 787

Query: 707 SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPY 766
           S  +T KG+++E+ K+LN FTT+DLS NKFQG IP+ +G LNSL+GLN SHN LTGLIP 
Sbjct: 788 SITVTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLTGLIPS 847

Query: 767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSY 826
           S  NL  LESLDLSSN++ G IP QLTSL FL+VLNLSQN L G IP+G QF TF +DSY
Sbjct: 848 SFGNLKSLESLDLSSNELIGSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSY 907

Query: 827 NGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWS-LFDWKMAVMGYGSGFVIGLSMGYSV 885
           N N GLCGFPLS+KC  DE  EP   +E D  +   FDWK+ +MGYG G VIGLS+G  V
Sbjct: 908 NENSGLCGFPLSKKCIADETPEP--SKEADAKFDGGFDWKITLMGYGCGLVIGLSLGCLV 965

Query: 886 FATGWPKWIARMVE---RKQSRNTVIRMLIQGAR 916
           F TG PKW   ++E    K+ R + +    QGAR
Sbjct: 966 FLTGKPKWFVWIIEDNIHKKIRRSKMSTCKQGAR 999

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/974 (47%), Positives = 585/974 (60%), Gaps = 91/974 (9%)

Query: 2   LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSC 61
           LL FKQ FS +      C       Y K  SWK+  DCCSWDGVTCD +TGHV  LDLSC
Sbjct: 42  LLHFKQSFSIDNSSSWYCDYYDVTFYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSC 101

Query: 62  SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA 121
           S L G+I S+++LF LPHLQ LNLAFN+F  S IS GF RF +L HLNL  S FSG I  
Sbjct: 102 SWLFGTIHSNTTLFHLPHLQRLNLAFNNFRGSSISAGFGRFSSLTHLNLCDSEFSGPISP 161

Query: 122 EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
           EISHLS LVSLDLS N           +LVQNL +LQ+L L  + +S   P FL N +SL
Sbjct: 162 EISHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGGISISSIFPKFLLNWASL 221

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMG 241
            SLDL +  L G  P++   LP L+ L L +N  L+  FP+ + ++ L  + L   NF G
Sbjct: 222 VSLDLLDGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQFSENNSLTELYLSSKNFSG 281

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            +PAS+GNL  L  L L    FSG IPS++ NL+ L  L +   +F+G IP    NLTQ+
Sbjct: 282 ELPASIGNLKSLKILVLHNCGFSGSIPSSIGNLKSLMVLAMPGCEFSGSIPASLGNLTQI 341

Query: 302 SFLDFSNNQLNGPISS---------------------------SVSRLHSLVTIYLS--Y 332
             L    N  +G IS                            S+  L +L  +Y S  +
Sbjct: 342 IALHLDRNHFSGKISKVINFFNNFRNLISLGLASNNFSGQLPPSIGNLTNLQDLYFSDNF 401

Query: 333 NSLNGTIPSGLFTSP----------------------LLESIDLRNNQLTGSISNSISEL 370
           N  NGTIPS L+T P                       LE IDL  N+L GSI  SI +L
Sbjct: 402 NMFNGTIPSWLYTMPSLVQLDLSHNKLTGHIGEFQFDSLEYIDLSMNELHGSIPGSIFKL 461

Query: 371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS 430
           +NL  L LSSNN SG +E   F +L+NL  LDLS+N LSL+T     S  PY        
Sbjct: 462 INLRYLFLSSNNFSGVLETSNFGKLRNLTSLDLSNNMLSLTTSDDSKSMLPY-------- 513

Query: 431 CNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW 490
                          ++ LDLS+N I G    W WN+GK+TL +LNLS+N ++G E+LPW
Sbjct: 514 ---------------IESLDLSNNNISG---IWSWNMGKNTLQYLNLSYNLISGFEMLPW 555

Query: 491 KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           KNL  LDL SN L+G +P  P S  F SVS+NKLSGEI   FC  SS+  ++LSNN+L+G
Sbjct: 556 KNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSMRILDLSNNNLSG 615

Query: 551 MIPPCLANSSLWF--LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF 608
           M+P CL N S +   L++  N FHG IPQTF KG+ +  L+ N NQLEG +P SL+ C  
Sbjct: 616 MLPLCLGNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLEGLLPRSLIICRK 675

Query: 609 LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNE 668
           LEVLD+GNN+IN TFP WLG L ELQVL+LRSN FHG I  S  + PF  LRI+DL+ N+
Sbjct: 676 LEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLAYND 735

Query: 669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY-GNEYY--SAILTVKGVNMEMEKVLNI 725
           F G LP  Y ++ +A M+      + GNM   Y G+ YY  S ++T+KG+ +E  K+LN 
Sbjct: 736 FEGDLPEMYLRSLKATMN-----VDEGNMTRKYMGDSYYQDSVMVTIKGLEIEFVKILNT 790

Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
           FTTIDLS NKFQG IP+ +G LNSL+GLN SHN L G IP S +NL  LESLDLSSNK+ 
Sbjct: 791 FTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNSLAGHIPSSFKNLKLLESLDLSSNKLI 850

Query: 786 GEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDE 845
           G IP +LTSL FL+VLNLS+N L G IP+G QF TF +DSY+ N GLCGFPLS+KC  DE
Sbjct: 851 GSIPQELTSLTFLEVLNLSENHLTGFIPRGNQFDTFGNDSYSENSGLCGFPLSKKCITDE 910

Query: 846 VTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVER---KQ 902
            +E  ++ +E+     FDWK+ +MGYG G VIGLS+G  +F TG PK     +E    K+
Sbjct: 911 ASESSKEADEEFDGG-FDWKITLMGYGCGLVIGLSLGCLIFLTGKPKRFVWFIEENIHKK 969

Query: 903 SRNTVIRMLIQGAR 916
            R +      QGAR
Sbjct: 970 IRRSTRSTCRQGAR 983

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/971 (49%), Positives = 589/971 (60%), Gaps = 87/971 (8%)

Query: 2   LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSC 61
           LL  KQ FS +      C      SY K  SWK+  DCCSWDGVTCD +TGH+ GLDLSC
Sbjct: 40  LLHLKQSFSIDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWVTGHIIGLDLSC 99

Query: 62  SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA 121
           S L G I S+S+LF  PHL+ LNLA NDF+ S +S GF RF +L HLNLS S FSG I +
Sbjct: 100 SWLFGIIHSNSTLFLFPHLRRLNLASNDFSGSSVSVGFGRFSSLTHLNLSDSGFSGLISS 159

Query: 122 EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
           EISHLS LVSLDLS NS          +LVQNL +LQ+L L  + +S   P  L N SSL
Sbjct: 160 EISHLSNLVSLDLSWNSDAEFAPHGFNSLVQNLTKLQKLHLRGISISSVFPDSLLNRSSL 219

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY------ 235
            SLDL +CGL G  P++    P L+ L L  N +L+  FP+ + ++ L  M+LY      
Sbjct: 220 ISLDLSSCGLHGRFPDHDIHFPKLEVLDLQGNNDLSGNFPRFSENNSL--MELYLSSKNF 277

Query: 236 --------------------GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ 275
                                C F GSIPASL NL+Q+T L+L  N FSG IP+  SNL+
Sbjct: 278 SGELPASIGNLKSLQTLYISNCEFSGSIPASLENLTQITSLNLDENLFSGKIPNVFSNLR 337

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335
            L  L L  N F+GQ+P    NLT L  L+  +NQL G I S V+   SL  + L YN  
Sbjct: 338 NLISLHLHGNNFSGQLPSSIGNLTNLQGLNLYDNQLEGVIPSFVNGFLSLSYVDLGYNLF 397

Query: 336 NGTIPS----------------------GLFTSPLLESIDLRNNQLTGSISNSISELVNL 373
           NG IPS                      G F S  LE I L+ N+L G I +SI +LVNL
Sbjct: 398 NGIIPSWLYALPSLVVLYLDHNKLTGHIGEFQSDSLELICLKMNKLHGPIPSSIFKLVNL 457

Query: 374 IDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI 433
             L LSSNNLSG +E   F +L+NL  LDLS+N LS  T    NS  P            
Sbjct: 458 RYLHLSSNNLSGVLETSNFGKLRNLTSLDLSNNMLSSITSSNSNSILP------------ 505

Query: 434 SEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNL 493
                       +Q LD S+N I G    W WN+GK+TL +LNLS+N ++G E+LPW+NL
Sbjct: 506 -----------SIQRLDFSNNNISGV---WSWNMGKNTLQYLNLSYNSISGFEMLPWENL 551

Query: 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIP 553
             LDL SN L+G +P LP S  F SVS+NKLSGEI    C  SS+   +LSNN+L+G++P
Sbjct: 552 YTLDLHSNLLQGPLPTLPNSTFFFSVSHNKLSGEISSLICKASSMRIFDLSNNNLSGVLP 611

Query: 554 PCLANSS--LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611
            CL N S  L+ L++R N FHG IPQTF KG+ +  L+ NDNQLEG VP SL+ C  LEV
Sbjct: 612 HCLGNFSKDLFVLNLRRNQFHGIIPQTFLKGNAIRNLDFNDNQLEGPVPRSLIICRKLEV 671

Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
           LD+GNN+IN TFP WLG L ELQVL+LRSN FHG I  S  + PF  LRI+DL++N+F G
Sbjct: 672 LDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGRSKIKSPFMSLRIIDLAHNDFEG 731

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINY-GNEYY--SAILTVKGVNMEMEKVLNIFTT 728
            LP  Y ++ +A+M+      + GNM   Y G EYY  S ++T+K + +E  K+LN FTT
Sbjct: 732 DLPEMYLRSLKAIMN-----IDEGNMTRKYMGEEYYQDSIVVTIKRLEIEFVKILNTFTT 786

Query: 729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI 788
           IDLS NKFQG IP+ +G LNSL+GLN SHN L G IP S  NL  LESLDLSSNK+ G I
Sbjct: 787 IDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGRI 846

Query: 789 PWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTE 848
           P +LTSL FL+VLNLSQN L G IPQG QF TF +DSYN N GLCGFPLS+KC  DE  E
Sbjct: 847 PQELTSLTFLEVLNLSQNHLTGFIPQGNQFDTFGNDSYNENSGLCGFPLSKKCIIDETPE 906

Query: 849 PIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVI 908
             ++ + +     FDWK+ +MGYG G +IGLS+G  +F TG PKW+  MVE    +    
Sbjct: 907 SSKETDAEFDGG-FDWKITLMGYGCGLIIGLSLGCLIFLTGKPKWLTTMVEENIHKKITR 965

Query: 909 RMLIQGARGRR 919
                  RG R
Sbjct: 966 SKKGTCRRGAR 976

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147793123|emb|CAN75335.1| hypothetical protein VITISV_032542 [Vitis vinifera]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/939 (49%), Positives = 584/939 (62%), Gaps = 87/939 (9%)

Query: 2   LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSC 61
           LL  KQ FS        C  +   SY K  SWK+  DCCSWDGVTCD +TGHV  LDLSC
Sbjct: 41  LLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSC 100

Query: 62  SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA 121
           S L G+I S+++LF LPH+Q LNLAFN+F+ S IS GF RF +L HLNLS S FSG I  
Sbjct: 101 SWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNLSDSGFSGLISP 160

Query: 122 EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
           EISHLS LVSLDLS NS          +LVQNL +LQ+L L  + +S   P+ L N SSL
Sbjct: 161 EISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISISSVFPNSLLNRSSL 220

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWS--------------- 226
            SL L +CGL G  P++   LP L+ L L  N +L+  FP+ N +               
Sbjct: 221 ISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSLTELYLLSKNFSG 280

Query: 227 ---------SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
                      L+ +DL  C F GSIPASL NL+Q+T L+L+ N+FSG IP+  +NL+ L
Sbjct: 281 ELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSGKIPNIFNNLRNL 340

Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSR--LHSLVTIYLSYNSL 335
             + LSNN F+GQ P    NLT L +LDFS NQL G I S V+     SL  +YL YN  
Sbjct: 341 ISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFSSLSYVYLGYNLF 400

Query: 336 NGTIPSGLFT----------------------SPLLESIDLRNNQLTGSISNSISELVNL 373
           NG IPS L+T                         LE IDL  N+L G I +SI +LVNL
Sbjct: 401 NGIIPSWLYTLLSLVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELHGPIPSSIFKLVNL 460

Query: 374 IDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI 433
             L LSSNNLSG +E   F +L+NL+ L LS+N LSL+T    N   P            
Sbjct: 461 RSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCILP------------ 508

Query: 434 SEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNL 493
                      +++ +DLS+N+I G    W WN+GKDTL +LNLS+N ++G E+LPWKN+
Sbjct: 509 -----------KIESIDLSNNKISGV---WSWNMGKDTLWYLNLSYNSISGFEMLPWKNV 554

Query: 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIP 553
             LDL SN L+G++P  P S  F SV +NKLSG I    C +SSI  ++LS+N+L+GM+P
Sbjct: 555 GILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVLDLSSNNLSGMLP 614

Query: 554 PCLANSS--LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611
            CL N S  L  L++R N FHG+IPQ+F KG+ +  L+ NDN+LEG VP SL+ C  LEV
Sbjct: 615 HCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVPRSLIICRKLEV 674

Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
           L++GNN+IN TFP WLG L ELQVL+LRSN FHG I  S  + PF  LRI+DL++N+F G
Sbjct: 675 LNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRIIDLAHNDFEG 734

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINY-GNEYY--SAILTVKGVNMEMEKVLNIFTT 728
            LP  Y ++ +  M     + +  NM   Y G  YY  S ++T+KG+ +E  K+LN F T
Sbjct: 735 DLPEMYLRSLKVTM-----NVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEFVKILNAFAT 789

Query: 729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI 788
           IDLS NKFQG IP+ +G LNSL+GLN SHN LTG IP S  NL  LESLDLSSNK+ G I
Sbjct: 790 IDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSSNKLIGSI 849

Query: 789 PWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTE 848
           P QLTSL FL+VLNLSQN L G IP+G QF TF +DSYNGN  LCGFPLS+KC  DE  E
Sbjct: 850 PQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKCIADETPE 909

Query: 849 PIQDREEDDTWS-LFDWKMAVMGYGSGFVIGLSMGYSVF 886
           P   +EED  +   FDWK  ++GYG G V GLS+G  +F
Sbjct: 910 P--SKEEDAEFENKFDWKFMLVGYGCGLVYGLSLGGIIF 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493403|ref|XP_003616990.1| Receptor-like protein kinase [Medicago truncatula] gi|355518325|gb|AES99948.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1002 (45%), Positives = 586/1002 (58%), Gaps = 106/1002 (10%)

Query: 2    LLQFKQLFSFETRQPSGCG---RLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLD 58
            LL FK  FSF T   S      R  + S+ K+ SWK   DCC WDGVTCD M+ HV GLD
Sbjct: 34   LLHFKNSFSFNTSSKSDIHFWPRCSTFSF-KIESWKNNTDCCGWDGVTCDSMSDHVIGLD 92

Query: 59   LSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ 118
            LSCS L+G +  +S++F L HLQ LNLAFN+F+ S +        NL HLNLS  S  G 
Sbjct: 93   LSCSNLNGELHPNSTIFQLRHLQQLNLAFNNFSGSLLHVSIDDLVNLTHLNLSHCSLGGN 152

Query: 119  IPAEISHLSKLVSLDLSG----NSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
            IP+ ISHLSKLVSLDLS     +  L L+    K L+ N   L+EL L  V+MS    S 
Sbjct: 153  IPSTISHLSKLVSLDLSSYYDWHMGLKLNPLTWKKLIHNATNLRELSLGCVNMSSIRASS 212

Query: 175  LTNLSSLTSLDLG----NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLR 230
            L+ L +L+S  +       GLQG++  +I  LPNLQ L LS NK L+S  PK NWS+PLR
Sbjct: 213  LSMLKNLSSSLVSLGLGETGLQGNLSSDILSLPNLQTLDLSSNKYLSSQLPKSNWSTPLR 272

Query: 231  FMDLYG------------------------CNFMGSIPASLGNLSQLT------------ 254
            ++DL                          CNF G IP SLGNL+QLT            
Sbjct: 273  YLDLSRTPFSGEIPYSIGQLKSLTQLDLEMCNFDGLIPPSLGNLTQLTSLFFQSNNLKGE 332

Query: 255  ------------YLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLS 302
                        Y DL YNNFSG IP+   NL +L +L  S N  +G +P    NLT+LS
Sbjct: 333  IPSSLSKLTHLTYFDLQYNNFSGSIPNVFENLIKLEYLGFSGNNLSGLVPSSLFNLTELS 392

Query: 303  FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGS 362
             LD +NN+L GPI + +++   L  + L+ N LNG IP   ++   L  +DL +NQLTGS
Sbjct: 393  HLDLTNNKLVGPIPTEITKHSKLYLLALANNMLNGAIPPWCYSLTSLVELDLNDNQLTGS 452

Query: 363  IS----------------------NSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLG 400
            I                       NSI +L NL DL LSS NLSG V+ + F+  K L  
Sbjct: 453  IGEFSTYSLIYLFLSNNNIKGDFPNSIYKLQNLFDLGLSSTNLSGVVDFHQFSNCKKLFF 512

Query: 401  LDLSHNSL-SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGG 459
            LDLSHNSL S++    V+S  P L +L LSS NIS FP FL     L  LDLS N+I+G 
Sbjct: 513  LDLSHNSLLSINIESRVDSILPNLGILYLSSSNISSFPKFLAQNQNLVELDLSKNKIQGK 572

Query: 460  IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISV 519
            +P W          H  L H          W++++++DL  N L+G +P     + +  +
Sbjct: 573  VPKWF---------HEKLLHT---------WRDIQHVDLSFNKLQGDLPIPRYGIYYFLL 614

Query: 520  SNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQT 578
            SNN  +G I  S CN SS+  +NL++N+L GMIP CL    SL  LDM+MNN +G IP+T
Sbjct: 615  SNNNFTGNIDFSLCNASSLNVLNLAHNNLTGMIPQCLGTFPSLSVLDMQMNNLYGHIPRT 674

Query: 579  FSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL 638
            FSKG+    + LN N+LEG +P SL +C+ LEVLD+G+N +  TFP WL  L ELQVL L
Sbjct: 675  FSKGNAFETIKLNGNRLEGPLPQSLAHCTKLEVLDLGDNNVEDTFPNWLETLQELQVLSL 734

Query: 639  RSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY 698
            RSN+ HG IT S T+ PFPKLRI D+SNN F G LPT   +NFQ MM+ N+N+   G  Y
Sbjct: 735  RSNKLHGAITCSSTKHPFPKLRIFDVSNNNFIGPLPTSCIKNFQGMMNVNDNNT--GLQY 792

Query: 699  INYGNEYY-SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH 757
            +   N Y  S ++ VKG++ME+ K+L  FTTIDLS N F+G IP+V G+L SLKGLN S+
Sbjct: 793  MGKSNYYNDSVVVVVKGLSMELTKILTTFTTIDLSNNMFEGEIPQVFGELISLKGLNLSN 852

Query: 758  NKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQ 817
            NK+TG IPYSL +L  LE LDLS N++ GEIP  LT+LNFL  LNLSQN L G IP G+Q
Sbjct: 853  NKITGTIPYSLSSLRNLEWLDLSRNQLKGEIPLALTNLNFLSFLNLSQNHLEGIIPTGQQ 912

Query: 818  FHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVI 877
            F TF +DS+ GN  LCGFPLS+ C  DE   P      D+  S F WK  V+GY  G V+
Sbjct: 913  FGTFGNDSFEGNTMLCGFPLSKSCKTDEDWSPYS-TSNDEEESGFGWKAVVIGYACGSVV 971

Query: 878  GLSMGYSVFATGWPKWIARMVERKQSRNTVIRMLIQGARGRR 919
            G+ +G++VF  G P+W++R++E   S     +    GA  RR
Sbjct: 972  GMLLGFNVFVNGKPRWLSRLIESIFSVRLQRKNNRAGANRRR 1013

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	920
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.761	0.787	0.381	2.5e-134
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.743	0.923	0.370	6.8e-132
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.786	0.791	0.368	1.1e-131
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.765	0.799	0.364	4.3e-128
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.901	0.813	0.373	8.7e-127
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.721	0.751	0.382	1e-126
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.955	0.918	0.357	1.1e-126
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.931	0.958	0.359	1e-123
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.725	0.825	0.407	9.2e-123
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.770	0.713	0.385	2.9e-119

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 1142 (407.1 bits), Expect = 2.5e-134, Sum P(2) = 2.5e-134
 Identities = 281/736 (38%), Positives = 415/736 (56%)

Query:   191 LQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSS--PLRFMDLYGCNFMGS-IPASL 247
             L GS+   +  L  L+ L +SYN     + P  +      L +++L   NF  S +P   
Sbjct:   159 LTGSL-SFVRNLRKLRVLDVSYNHFSGILNPNSSLFELHHLIYLNLRYNNFTSSSLPYEF 217

Query:   248 GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFS 307
             GNL++L  LD+S N+F G +P T+SNL QL  L L  N FTG +P +  NLT+LS L   
Sbjct:   218 GNLNKLEVLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLPLV-QNLTKLSILHLF 276

Query:   308 NNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI--PSGLFTSPLLESIDLRNNQLTGSISN 365
              N  +G I SS+  +  L +IYL+ N+L+G+I  P+   +S  LE + L  N L G I  
Sbjct:   277 GNHFSGTIPSSLFTMPFLSSIYLNKNNLSGSIEVPNSS-SSSRLEHLYLGKNHL-GKILE 334

Query:   366 SISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXXXXXXXXXXPVNSSFPY-LS 424
              I++LV               ++L +F+ LK+                  ++S  P  L 
Sbjct:   335 PIAKLVNLKELDLSFLNTSHPIDLSLFSSLKSLLLLDLSGDWISKASLT-LDSYIPSTLE 393

Query:   425 MLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG 484
             +L L  C+ISEFP+  +T H L+ + LS+N+I G  P W+W++ +  L+ + ++ N LTG
Sbjct:   394 VLRLEHCDISEFPNVFKTLHNLEYIALSNNRISGKFPEWLWSLPR--LSSVFITDNLLTG 451

Query:   485 IE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
              E    +L   +++ L L +NSL+G++P LP S+N+ S  +N+  G+IPLS CN SS+  
Sbjct:   452 FEGSSEVLVNSSVQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNRSSLDV 511

Query:   541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
             ++LS N+ +G IPPCL+N  L +L +R NN  GSIP  +   + L   ++  N+L G +P
Sbjct:   512 LDLSYNNFSGQIPPCLSN--LLYLKLRKNNLEGSIPDKYYVDTPLRSFDVGYNRLTGKLP 569

Query:   601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFP--FPK 658
              SL+NCS L+ L V +N I  TFP +L AL +LQVL+L SN F+GP++    + P  FP+
Sbjct:   570 RSLINCSALQFLSVDHNGIKDTFPFYLKALPKLQVLLLSSNEFYGPLS-PPNQGPLGFPE 628

Query:   659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY--INYGN---EYYSAI-LTV 712
             LRIL+++ N+ TG LP  +F N++A  H  N       +Y  + +GN    YY  I L  
Sbjct:   629 LRILEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYMVYSKVIFGNYHLTYYETIDLRY 688

Query:   713 KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT 772
             KG++ME E VL    TIDLSGN+ +G IPE +G L +L  LN S+N  TG IP SL NL 
Sbjct:   689 KGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLSLANLK 748

Query:   773 QLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSDSYNGNMGL 832
             ++ESLDLSSN+++G IP  L                 G IPQG Q       S+ GN GL
Sbjct:   749 KIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGL 808

Query:   833 CGFPLSEKC--SN-DEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATG 889
             CGFPL E C  +N     +P ++ E ++     +WK   +GYG G ++GL++   + A+ 
Sbjct:   809 CGFPLQESCFGTNAPPAQKPKEEEEAEEDEQELNWKAVAIGYGVGVLLGLAIA-QLIASY 867

Query:   890 WPKWIARMVERKQSRN 905
              P+W+  +V+   SRN
Sbjct:   868 KPEWLVCLVK---SRN 880

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 6.8e-132, Sum P(2) = 6.8e-132
 Identities = 269/726 (37%), Positives = 388/726 (53%)

Query:   191 LQGSIPEN--IFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASL 247
             L G +  N  +FRL +LQ L+L  N +L+ + P  +     L+ + L  CN  G IP+SL
Sbjct:    36 LNGPLRSNSSLFRLQHLQKLVLGSN-HLSGILPDSIGNLKRLKVLVLVNCNLFGKIPSSL 94

Query:   248 GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFS 307
             GNLS LT+LDLSYN+F+   P ++ NL          N+ T  +      L+ ++++D  
Sbjct:    95 GNLSYLTHLDLSYNDFTSEGPDSMGNL----------NRLTDML----LKLSSVTWIDLG 140

Query:   308 NNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG--SISN 365
             +NQL G + S++S L  L    +S NS +GTIPS LF  P L  + L  N  +G   I N
Sbjct:   141 DNQLKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSGPFEIGN 200

Query:   366 SISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXXXXXXXXXXPVNSSFPYLSM 425
               S                  V+L +F+ L +                  + S   YL +
Sbjct:   201 ISSPSNLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSGINLKISSTVSLPSPIEYLGL 260

Query:   426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
             LS   CNISEFP FLR Q  L+ LD+S NQI G +P W+W++ +  L ++N+SHN   G 
Sbjct:   261 LS---CNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLPE--LRYVNISHNSFNGF 315

Query:   486 E-----LLPWKNLRYLDLRSNSLKGSIPFLPP-SLNFISVSNNKLSGEIPLSFCNMSSIF 539
             E     +   + L  LD+ SN  +   P LP  S+N++  SNN+ SGEIP + C + ++ 
Sbjct:   316 EGPADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLR 375

Query:   540 YVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599
              + LSNN+ +G IP C  N  L+ L +R NN  G  P+  +    L   ++  N   G +
Sbjct:   376 ILVLSNNNFSGSIPRCFENLHLYVLHLRNNNLSGIFPEE-AISHHLQSFDVGHNLFSGEL 434

Query:   600 PLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKL 659
             P SL+NCS +E L+V +NRIN TFP+WL  L  LQ+L+LRSN F+GPI        F +L
Sbjct:   435 PKSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRL 494

Query:   660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM-YINYG--NEYY--SAILTVKG 714
             RI D+S N FTGVLP+ YF  +  M   +    +G  + Y   G   ++Y  S  L  KG
Sbjct:   495 RIFDISENRFTGVLPSDYFVGWSVM--SSVVDIDGRIIQYTVTGIDRDFYHKSVALINKG 552

Query:   715 VNMEME-KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQ 773
             + ME+      I+ TID+SGN+ +G IPE +G L  +  L+ S+N  TG IP SL NL+ 
Sbjct:   553 LKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSN 612

Query:   774 LESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSDSYNGNMGLC 833
             L+SLDLS N+++G IP +L                 GPIP+  Q  T  S S+  N GLC
Sbjct:   613 LQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLC 672

Query:   834 GFPLSEKCSNDE-VTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPK 892
             G PL +KC  +E  T+  QD ++++   +F W  A +GY  G V GL++G+ +  +    
Sbjct:   673 GAPLLKKCGGEEEATKQEQDEDKEEEDQVFSWIAAAIGYVPGVVCGLTIGH-ILVSHKRD 731

Query:   893 WIARMV 898
             W  R+V
Sbjct:   732 WFMRIV 737

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 1133 (403.9 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
 Identities = 279/758 (36%), Positives = 412/758 (54%)

Query:   170 EVPXXXXXXXXXXXXXXGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSS- 227
             +VP               N  L GS+  +  R L  L+ L +SYN     + P  +    
Sbjct:   169 QVPFSFSNLSMLSALVLSNNDLTGSL--SFARNLRKLRVLDVSYNHFSGILNPNSSLFEL 226

Query:   228 -PLRFMDLYGCNFMGS-IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285
               + +++L   NF  S +P   GNL++L  LD+S N+F G +P T+SNL QL  L L  N
Sbjct:   227 HHIIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPPTISNLTQLTELYLPLN 286

Query:   286 KFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI--PSGL 343
              FTG +P +  NLT+LS L    N  +G I SS+  +  L  + L  N+LNG+I  P+  
Sbjct:   287 HFTGSLPLV-QNLTKLSILHLFGNHFSGTIPSSLFTMPFLSYLSLKGNNLNGSIEVPNSS 345

Query:   344 FTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXX 403
              +S  LES+ L  N   G I   IS+L+               ++L +F+ LK+      
Sbjct:   346 -SSSRLESLHLGENHFEGKILEPISKLINLKELDLSFLNTSYPIDLSLFSSLKSLLLLDL 404

Query:   404 XXXXXXXXXXXPVNSSFPY-LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPN 462
                         ++S  P  L +L L  C+IS+FP+  +T H L+ + LS+N+I G  P 
Sbjct:   405 SGDWISKASLT-LDSYIPSTLEVLRLEHCDISDFPNVFKTLHNLEYIALSNNRISGKFPE 463

Query:   463 WIWNVGKDTLNHLNLSHNFLTGIE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFIS 518
             W+W++ +  L+ + ++ N LTG E    +L   +++ L L +NSL+G++P LP S+N+ S
Sbjct:   464 WLWSLPR--LSSVFITDNLLTGFEGSSEVLVNSSVQILSLDTNSLEGALPHLPLSINYFS 521

Query:   519 VSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQT 578
               +N+  G+IPLS CN SS+  ++LS N+  G IPPCL+N  L +L +R NN  GSIP  
Sbjct:   522 AIDNRFGGDIPLSICNRSSLDVLDLSYNNFTGPIPPCLSN--LLYLKLRKNNLEGSIPDK 579

Query:   579 FSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL 638
             + + + L  L++  N+L G +P SL+NCS L+ L V +N I  TFP  L AL +LQVL+L
Sbjct:   580 YYEDTPLRSLDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFSLKALPKLQVLLL 639

Query:   639 RSNRFHGPITY-SVTRFPFPKLRILDLSNNEFTG-VLPTRYFQNFQAMMHGNNNS----- 691
              SN+F+GP++  +     FP+LRIL+++ N+ TG  L + +F N++A  H  N       
Sbjct:   640 SSNKFYGPLSPPNEGPLGFPELRILEIAGNKLTGSFLSSDFFVNWKASSHTMNEDLGLYM 699

Query:   692 AEGGNMYINYGNEYYSAI-LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL 750
               G  ++ NY   YY  I L  KG++ME   VL    TID SGN+ +G IPE +G L +L
Sbjct:   700 VYGKVIFGNYHLTYYETIDLRYKGLSMEQRNVLTSSATIDFSGNRLEGEIPESIGLLKAL 759

Query:   751 KGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXG 810
               LN S+N  TG IP S  NL ++ESLDLSSN+++G IP  L                 G
Sbjct:   760 IALNLSNNAFTGHIPLSFANLKKMESLDLSSNQLSGTIPNGLRTLSFLAYVNVSHNQLIG 819

Query:   811 PIPQGKQFHTFSSDSYNGNMGLCGFPLSEKC---SNDEVTEPIQDREEDDTWSLFDWKMA 867
              IPQG Q       S+ GN GLCGFPL E C   +      P +  EE++   + +WK  
Sbjct:   820 EIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNTPPAQHPKEQEEEEEDEQVLNWKAV 879

Query:   868 VMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRN 905
              +GYG G ++GL++   + +   PKW+A +V +  SRN
Sbjct:   880 AIGYGIGVLLGLAIA-QLISLYKPKWLASLVIK--SRN 914

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1100 (392.3 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
 Identities = 267/733 (36%), Positives = 405/733 (55%)

Query:   191 LQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSS--PLRFMDLYGCNFMGS-IPASL 247
             L GS+   +  L  L+ L +SYN     + P  +      L ++ L   +F  S +P   
Sbjct:   159 LTGSL-SFVRNLRKLRVLDVSYNHFSGILNPNSSLFELHHLTYLSLGSNSFTSSTLPYEF 217

Query:   248 GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFS 307
             GNL++L  LD+S N+F G +P T+SNL QL  L L  N FTG +P +  NLT+LS L   
Sbjct:   218 GNLNKLELLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLPLV-QNLTKLSILALF 276

Query:   308 NNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI--PSGLFTSPLLESIDLRNNQLTGSISN 365
              N  +G I SS+  +  L  + L  N+LNG+I  P+   +S  LES+ L  N   G I  
Sbjct:   277 GNHFSGTIPSSLFTMPFLSYLSLKGNNLNGSIEVPNSS-SSSRLESLYLGKNHFEGKILK 335

Query:   366 SISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXXXXXXXXXXPVNSSFPYLSM 425
              IS+L+               ++L +F+  K+                   +     L  
Sbjct:   336 PISKLINLKELDLSFLSTSYPIDLSLFSSFKSLLVLDLTGDWISQAGLSSDSYISLTLEA 395

Query:   426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
             L +  CNIS+FP+ L++   L+ +D+S+N++ G IP W+W++ +  L+ + +  N LTG 
Sbjct:   396 LYMKQCNISDFPNILKSLPNLECIDVSNNRVSGKIPEWLWSLPR--LSSVFIGDNLLTGF 453

Query:   486 E----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYV 541
             E    +L   +++ L L SNSL+G++P LP S+ + S   N+  G+IPLS CN SS+  +
Sbjct:   454 EGSSEILVNSSVQILVLDSNSLEGALPHLPLSIIYFSARYNRFKGDIPLSICNRSSLDVL 513

Query:   542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
             +L  N+  G IPPCL+N  L FL++R NN  GSIP T+   + L  L++  N+L G +P 
Sbjct:   514 DLRYNNFTGPIPPCLSN--LLFLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPR 571

Query:   602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY-SVTRFPFPKLR 660
             SL+NCS L+ L V +N I  TFP +L  L +LQVL+L SN+F+GP++  +     FP+LR
Sbjct:   572 SLLNCSALQFLSVDHNGIEDTFPFYLKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELR 631

Query:   661 ILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY--INYGNEYYSAILTV----KG 714
             IL+++ N+ TG LP  +F N++A     N       +Y  + YG  Y S + T+    KG
Sbjct:   632 ILEIAGNKLTGSLPQDFFVNWKASSLTMNEDQGLYMVYSKVVYGIYYLSYLATIDLQYKG 691

Query:   715 VNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQL 774
             ++ME + VL    TIDLSGN+ +G IPE +G L +L  LN S+N  TG IP SL NL ++
Sbjct:   692 LSMEQKWVLTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLVKI 751

Query:   775 ESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSDSYNGNMGLCG 834
             ESLDLSSN+++G IP  L                 G IPQG Q       S+ GN GLCG
Sbjct:   752 ESLDLSSNQLSGTIPNGLGTLSFLAYVNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCG 811

Query:   835 FPLSEKC--SNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPK 892
              PL ++C  +N       ++ E+++   + +W+   +GYG G ++GL++   + A+  P+
Sbjct:   812 LPLQQRCFGTNAPPAHQFKEEEDEEQEQVLNWEGVAIGYGVGVLLGLAIA-QLIASYKPE 870

Query:   893 WIARMVERKQSRN 905
             W+A +++   SRN
Sbjct:   871 WLACLIK---SRN 880

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 332/889 (37%), Positives = 473/889 (53%)

Query:    48 DMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAH 107
             D +TG +  LDLS S L G IP +  L  L  L  L+L+ +DF       G   F    +
Sbjct:   164 DKLTG-LERLDLSQSSLSGQIPIN--LLQLTKLVSLDLSSSDFF------GDESFH---Y 211

Query:   108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKAXXXXXXXXXXXXXXSVDM 167
             L++   SF   +P    +L  L  LD+S   ++  + P                    ++
Sbjct:   212 LSID-KSF---LPLLARNLRNLRELDMS-YVKISSEIP---EEFSNIRSLRSLNLNGCNL 263

Query:   168 SYEVPXXXXXXXXXXXXXXGNC-GLQGSIPENIFRLPN-LQNLILSYNKNLTSVFPKVNW 225
               E P              GN   L+G++P  +F   N L  L + Y     ++   ++ 
Sbjct:   264 FGEFPSSILLIPNLQSIDLGNNPNLRGNLP--VFHENNSLLKLTILYTSFSGAIPDSISS 321

Query:   226 SSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285
                L  + L    F G IP SLGNLS L++L LS NN  G IPS++ NL QL +  +  N
Sbjct:   322 LKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGN 381

Query:   286 KFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT 345
             K +G +P   +NLT+L+ +  S+NQ  G +  S+S+L  L   +   N   G I S L  
Sbjct:   382 KLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILSPLLK 441

Query:   346 SPLLESIDLRNNQLTGSIS-NSISEL--VXXXXXXXXXXXXXXXVELYMFAELKNXXXXX 402
              P L  I L  NQL   +   +I  L  +               ++L +F+ LK      
Sbjct:   442 IPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQLGTLY 501

Query:   403 XXXXXXXXXXXXPVNSSFPY-LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIP 461
                          + S FP  L  LSL SCNI++FP+F+R    LQILDLS+N+I+G +P
Sbjct:   502 ISRIPISTTN---ITSDFPSNLEYLSLRSCNITDFPEFIRKGRNLQILDLSNNKIKGQVP 558

Query:   462 NWIWNVGKDTLNHLNLSHNFLTG----IELLPWKNLRYLDLRSNSLKGSIPFLPP-SLNF 516
             +W+W +   TLN ++LS+N L+G    ++  P   L  +DL SN+ +G + FLP  SL +
Sbjct:   559 DWLWRM--PTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPL-FLPSKSLRY 615

Query:   517 ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGS 574
              S SNN  +G+IP S C +SS+  ++LSNN+LNG +P CL    SSL  LD+R N+  GS
Sbjct:   616 FSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGS 675

Query:   575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ 634
             +P+ F   ++L  L+++ N++EG +P SL  CS LEVL+VG+NRIN  FP  L +L +LQ
Sbjct:   676 LPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQ 735

Query:   635 VLILRSNRFHGPITYSVTR--FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA 692
             VL+L SN+FHG + ++V    F FP+L+I+D+S+N+F G+LP+ YF N+ AM    +N+ 
Sbjct:   736 VLVLHSNKFHGTL-HNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNI 794

Query:   693 EGGNMYIN----YGNE--YY-SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVG 745
             E    YI     YG+   YY S +L  KGV+MEME+VL I+T IDLSGN+  G+IP+ +G
Sbjct:   795 EPE--YIQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIG 852

Query:   746 KLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXX 805
              L  L+ LN S N  TG IP SL NL  LESLD+S N ++GEIP +L             
Sbjct:   853 LLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSH 912

Query:   806 XXXXGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKC-----SNDEVTEPIQDREEDDTWS 860
                 G IPQG QF      SY GN GL G  L   C     S    TEP++ +EE++  S
Sbjct:   913 NQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEES 972

Query:   861 LFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRNTVIR 909
              F W  A +G+  G V GL+MGY V +    +W  +   R + +NT  R
Sbjct:   973 -FSWIAAGLGFAPGVVFGLAMGYIVVSYKH-QWFMKTFGRSKQQNTRTR 1019

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
 Identities = 267/698 (38%), Positives = 392/698 (56%)

Query:   229 LRFMDLYGCNFMGS-IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF 287
             L ++DL   NF  S +P   GNL++L  LD+S N+F G +P T+SNL QL  L L  N F
Sbjct:   199 LAYLDLGSNNFTSSSLPYEFGNLNKLELLDVSSNSFFGQVPPTISNLTQLTELYLPLNDF 258

Query:   288 TGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI--PSGLFT 345
             TG +P +  NLT+LS L  S+N  +G I SS+  +  L  + L  N+L+G+I  P+   +
Sbjct:   259 TGSLPLV-QNLTKLSILHLSDNHFSGTIPSSLFTMPFLSYLDLGGNNLSGSIEVPNSSLS 317

Query:   346 SPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXX 405
             S L E+++L  N   G I   IS+L+               + L +F+ LK         
Sbjct:   318 SRL-ENLNLGENHFEGKIIEPISKLINLKELHLSFLNTSYPINLKLFSSLKYLLLLDLSG 376

Query:   406 XXXXXXXXXPVNSSFPY-LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWI 464
                       ++S  P  L  L L  CNIS FP+ L+T   L+ + LS N+I G IP W+
Sbjct:   377 GWISQASLS-LDSYIPSTLEALLLKHCNISVFPNILKTLPNLEFIALSTNKISGKIPEWL 435

Query:   465 WNVGKDTLNHLNLSHNFLTGIE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVS 520
             W++ +  L+ + +  N  TG E    +L   ++R L+L SN+L+G++P LP S+N+ S  
Sbjct:   436 WSLPR--LSSVFIEENLFTGFEGSSEILVNSSVRILNLLSNNLEGALPHLPLSVNYFSAR 493

Query:   521 NNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFS 580
             NN+  G+IPLS C+  S+ +++LS N+  G IPPC +N  +  L++R NN  GSIP T+ 
Sbjct:   494 NNRYGGDIPLSICSRRSLVFLDLSYNNFTGPIPPCPSNFLI--LNLRKNNLEGSIPDTYY 551

Query:   581 KGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640
               + L  L++  N+L G +P SL+NCS L+ L V +N I  TFP  L AL +LQVLIL S
Sbjct:   552 ADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIKDTFPFSLKALPKLQVLILHS 611

Query:   641 NRFHGPITY-SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYI 699
             N F+GP++  +     FP+LRIL+++ N+FTG LP  +F+N++A     N   +G  M  
Sbjct:   612 NNFYGPLSPPNQGSLGFPELRILEIAGNKFTGSLPPDFFENWKASSLTMNED-QGLYMVY 670

Query:   700 N---YGNEYYSAI----LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKG 752
             N   YG  Y++++    L  KG++ME  +VL+   TID SGN+ +G IPE +G L +L  
Sbjct:   671 NKVVYGTYYFTSLEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIA 730

Query:   753 LNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPI 812
             LN S+N  TG IP SL NL ++ESLDLSSN+++G IP  +                 G I
Sbjct:   731 LNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEI 790

Query:   813 PQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQ-----DREEDDTWSLFDWKMA 867
             PQG Q       S+ GN GLCG PL E C       P Q     + EE++   + +WK  
Sbjct:   791 PQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAP-PAQHPKEEEEEEEEEEQVLNWKGV 849

Query:   868 VMGYGSGFVIGLSMGYSVFATGWPKWIARMVERKQSRN 905
              +GYG G ++GL++   + A+  P+W+  +    QSRN
Sbjct:   850 GIGYGVGVLLGLAIA-QLIASYKPEWLVFLF---QSRN 883

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 332/929 (35%), Positives = 469/929 (50%)

Query:     2 LLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSC 61
             LL FK  F      P  C     +S  K  SW    DCC+W+GVTC+  +G V  LDLSC
Sbjct:    45 LLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNAKSGEVIELDLSC 104

Query:    62 SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA 121
             S LHG   S+SS+ +L  L  L+L+FNDF    I+       +L +L+LS + FSGQI  
Sbjct:   105 SSLHGRFHSNSSIRNLHFLTTLDLSFNDFK-GQITSSIENLSHLTYLDLSSNHFSGQILN 163

Query:   122 EISHLSKLVSLDLSGNSQLGLDTPVLKAXXXXXXXXXXXXXXSVDMSY-----EVPXXXX 176
              I +LS+L  L+L  N   G   P                   +D+SY     + P    
Sbjct:   164 SIGNLSRLTYLNLFDNQFSG-QAP--------SSICNLSHLTFLDLSYNRFFGQFPSSIG 214

Query:   177 XXXXXXXXXXGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPK-VNWSSPLRFMDLY 235
                        +    G IP +I  L NL  L LS N N +   P  +   S L F+ L+
Sbjct:   215 GLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLS-NNNFSGQIPSFIGNLSQLTFLGLF 273

Query:   236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF 295
               NF+G IP+S GNL+QLT L +  N  SG+ P+ L NL  L  L LSNNKFTG +P   
Sbjct:   274 SNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNI 333

Query:   296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LESIDL 354
              +L+ L   D S+N   G   S +  + SL  I L+ N L GT+  G  +SP  L  +D+
Sbjct:   334 TSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDI 393

Query:   355 RNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXXXXXXXXXX 414
              NN   G I +SIS+LV               V+  +F+ LK+                 
Sbjct:   394 GNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDL 453

Query:   415 PVNSS-FPYLSMLSLSSCNISEFPDFLRTQ---HRLQILDLSDNQIRGGIPNWIWNVGKD 470
                 S F  L +L LS  ++S       +      +Q L LS   I    P ++    + 
Sbjct:   454 NYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGITE-FPEFVRT--QH 510

Query:   471 TLNHLNLSHNFLTG-IELLPWKN--LRYLDLRSNSLKG-SIPFLP-PSLNFISVSNNKLS 525
              L  L++S+N + G +    W+   L Y++L +N+L G   P  P PSL ++  SNN   
Sbjct:   511 ELGFLDISNNKIKGQVPDWLWRLPILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFI 570

Query:   526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGSIPQTFSKGS 583
             G+IP   C + S+  ++LS+N+ NG IP C+ +  S+L  L++R N+  G +P+   +  
Sbjct:   571 GKIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFE-- 628

Query:   584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
              L  L++  NQL G +P SL   S LEVL+V +NRIN TFP WL +L +LQVL+LRSN F
Sbjct:   629 ILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAF 688

Query:   644 HGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGN 703
             HGPI +  T   FP+LRI+D+S+N F G LPT YF  + AM     N  +    Y+  G 
Sbjct:   689 HGPI-HEAT---FPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGL 744

Query:   704 EYY-SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
              Y  S +L  KGV ME+ ++L I+T +D SGN+F+G IP+ +G L  L  L+ S+N  +G
Sbjct:   745 YYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSG 804

Query:   763 LIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFS 822
              +P S+ NLT LESLD+S NK+ GEIP +L                 G +P G+QF T +
Sbjct:   805 HMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQN 864

Query:   823 SDSYNGNMGLCGFPLSEKC-------SNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGF 875
               ++  N+GL G  L E C       S+ +   P  + E++D   L  W  A +G+G G 
Sbjct:   865 CSAFEDNLGLFGSSLEEVCRDIHTPASHQQFETPETEEEDED---LISWIAAAIGFGPGI 921

Query:   876 VIGLSMGYSVFATGWPKWIARMVERKQSR 904
               GL  GY +  +  P+W     +R   R
Sbjct:   922 AFGLMFGY-ILVSYKPEWFMNPFDRNNRR 949

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
 Identities = 325/905 (35%), Positives = 458/905 (50%)

Query:    25 DSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILN 84
             +S+ K  SW    DCC+W+GVTC+  +G V  L+LSCS LHG   S+SS+ +L  L  L+
Sbjct:     5 ESHRKTESWGNNSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLD 64

Query:    85 LAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDT 144
              + NDF    I+       +L  L+LS + FSGQI   I +LS+L SLDLS N   G   
Sbjct:    65 RSHNDFE-GQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQ-- 121

Query:   145 PVLKAXXXXXXXXXXXXXXSVDMSYEVPXXXXXXXXXXXXXXGNCGLQGSIPENIFRLPN 204
               + +                    ++P                    G  P +I  L N
Sbjct:   122 --IPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSN 179

Query:   205 LQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFS 264
             L NL LSYNK    +   +   S L  + L   NF G IP+S GNL+QLT LD+S+N   
Sbjct:   180 LTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLG 239

Query:   265 GHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHS 324
             G+ P+ L NL  L  + LSNNKFTG +P    +L+ L     S+N   G   S +  + S
Sbjct:   240 GNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPS 299

Query:   325 LVTIYLSYNSLNGTIPSGLFTSPL-LESIDLRNNQLTGSISNSISELVXXXXXXXXXXXX 383
             L  + LS N L GT+  G  +SP  L+ +++ +N   G I +SIS+L+            
Sbjct:   300 LTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLNT 359

Query:   384 XXX-VELYMFAELKNXXXXXXXXXXXXXXXXXPVNSSFPYLSMLSLS-----SCNISEFP 437
                 V+  +F+ LK+                  +   F  L  L LS     + N S   
Sbjct:   360 QCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVS 419

Query:   438 DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW----KNL 493
                 +Q  +Q L LS   I    P  +    +  L  L++S+N + G ++  W     NL
Sbjct:   420 SDPPSQS-IQSLYLSGCGITD-FPEILRT--QHELGFLDVSNNKIKG-QVPGWLWTLPNL 474

Query:   494 RYLDLRSNSLKG-SIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM 551
              YL+L +N+  G   P  P PS+ ++  SNN  +G+IP   C + S++ ++LS+N+ +G 
Sbjct:   475 FYLNLSNNTFIGFQRPTKPEPSMAYLLGSNNNFTGKIPSFICELRSLYTLDLSDNNFSGS 534

Query:   552 IPPCLAN--SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFL 609
             IP C+ N  S+L  L++R NN  G  P+   +  R   L++  NQL G +P SL   S L
Sbjct:   535 IPRCMENLKSNLSELNLRQNNLSGGFPEHIFESLRS--LDVGHNQLVGKLPRSLRFFSNL 592

Query:   610 EVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEF 669
             EVL+V +NRIN  FP WL +L +LQVL+LRSN FHGPI  ++    FPKLRI+D+S+N F
Sbjct:   593 EVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPINQAL----FPKLRIIDISHNHF 648

Query:   670 TGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY-GNEYY--SAILTVKGVNMEMEKVLNIF 726
              G LPT YF  + + M       +G N  +NY G+ YY  S +L  KGV  E+ ++L I+
Sbjct:   649 NGSLPTEYFVEW-SRMSSLGTYEDGSN--VNYLGSGYYQDSMVLMNKGVESELVRILTIY 705

Query:   727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             T +D SGNKF+G IP+ +G L  L  LN S+N  TG IP S+ NLT LESLD+S NK+ G
Sbjct:   706 TAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYG 765

Query:   787 EIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKC----- 841
             EIP ++                 G +P G+QF T    S+ GN+GL G  L E C     
Sbjct:   766 EIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHT 825

Query:   842 --SNDEVTEPIQDREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSVFATGWPKWIARMVE 899
               S+ +   P Q  EED+   L  W  A +G+G G   GL  GY +  +  P+W      
Sbjct:   826 PASHQQFETP-QTEEEDE--DLISWIAAAIGFGPGIAFGLMFGY-ILVSYKPEWFMNPFG 881

Query:   900 RKQSR 904
             R   R
Sbjct:   882 RNNRR 886

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 284/697 (40%), Positives = 392/697 (56%)

Query:   229 LRFMDLYGCNFMG-SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF 287
             LR+++L   NF   S+P+  GNL++L  L LS N F G +PS+ SNL QL  LDLS+N+ 
Sbjct:    99 LRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNEL 158

Query:   288 TGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS-GLFTS 346
             TG  P +  NLT+LS L  S N  +G I SS+  L  L ++ L  N L G+I +    TS
Sbjct:   159 TGSFPFV-QNLTKLSILVLSYNHFSGTIPSSLLTLPFLSSLDLRENYLTGSIEAPNSSTS 217

Query:   347 PLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXX 406
               LE + L NN   G I   IS+L+               ++L +F+  K+         
Sbjct:   218 SRLEFMYLGNNHFEGQILEPISKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGN 277

Query:   407 XXXXXXXXPVNSSFPY-LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIW 465
                       +S  P  L  L L SC + EFP  L+   +L+ +DLS+N+I+G +P W W
Sbjct:   278 SLLATSITS-DSKIPLNLENLVLLSCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFW 336

Query:   466 NVGKDTLNHLNLSHNFLTGIE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSN 521
             N+ +  L  +NL +N  T +E    +L   ++R LDL  N  +G  P  P S+N +S  N
Sbjct:   337 NLPR--LRRVNLFNNLFTDLEGSEEVLVNSSVRLLDLAYNHFRGPFPKPPLSINLLSAWN 394

Query:   522 NKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGSIPQTF 579
             N  +G IPL  CN SS+  ++LS N+L G IP CL++   SL  +++R NN  GS+P  F
Sbjct:   395 NSFTGNIPLETCNRSSLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIF 454

Query:   580 SKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR 639
             S G+ L  L++  NQL G +P SL+NCS L  + V +N+I  TFP WL AL +LQ L LR
Sbjct:   455 SDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLR 514

Query:   640 SNRFHGPITYSVTRFP--FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM 697
             SN+FHGPI+    R P  FPKLRIL++S+N FTG LP  YF N++A     N   E G +
Sbjct:   515 SNKFHGPIS-PPDRGPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMN---EDGRI 570

Query:   698 YI-NYGNEYY----SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKG 752
             Y+ +Y N YY    +  L  KG+ ME  KVL  + TID SGNK +G+IPE +G L +L  
Sbjct:   571 YMGDYNNPYYIYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIA 630

Query:   753 LNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPI 812
             LN S+N  TG IP SL N+T+LESLDLS N+++G IP  L                 G I
Sbjct:   631 LNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEI 690

Query:   813 PQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEPIQDREEDDTWSLFDWKMAVMGYG 872
             PQG Q    S  S+ GN GLCG PL   C      +P   +EED+   + +WK  V+GY 
Sbjct:   691 PQGTQITGQSKSSFEGNAGLCGLPLQGSCFAPPTPQP---KEEDEDEEVLNWKAVVIGYW 747

Query:   873 SGFVIGLSMGYSVFATGWPKWIARMV--ERKQSRNTV 907
              G ++GL M + V A+  PKW+ ++V  E+++  N V
Sbjct:   748 PGLLLGLIMAH-VIASFKPKWLVKIVGPEKRKEDNPV 783

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 287/744 (38%), Positives = 402/744 (54%)

Query:   188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPK-VNWSSPLRFMDLYGCNFMGSIPAS 246
             N  L+GS+P N  R  +L  L + YN + +   P  ++    L  + L    F G IP+S
Sbjct:   264 NLNLEGSLP-NFLRNNSLLKLSI-YNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSS 321

Query:   247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
             L +LS L+ L LS NNF G IPS++SNL+QL   D+S+N   G  P    NL QL ++D 
Sbjct:   322 LRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDI 381

Query:   307 SNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL--TGSIS 364
              +N   G +  ++S+L +L       NS  G+IPS LF    L ++ L  NQL  T +I 
Sbjct:   382 CSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIK 441

Query:   365 NSISELVXXXXXXXXXXXXXXX-VELYMFAELKNXXXXXXXXXXXXXXXXXPVNSSFPYL 423
             N IS L                 V+L +F  LK                    +    +L
Sbjct:   442 N-ISLLHNLQRLLLDNNNFKASQVDLDVFLSLKRLVSLALSGIPLSTTNITSDSEFSSHL 500

Query:   424 SMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLT 483
               L LS CNI EFP+F+R Q  L  +DLS+N I+G +PNW+W + +  L+ ++LS+N L 
Sbjct:   501 EYLELSGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLWRLPE--LSTVDLSNNSLI 558

Query:   484 G----IELLPWKNLRYLDLRSNSLKGSIPFLPP-SLNFISVSNNKLSGEIPLSFCNMSSI 538
             G    ++ L    +  LDL SN+ +G + F+PP  + +   S N  +G IP S C +++ 
Sbjct:   559 GFNGSLKALSGSKIVMLDLSSNAFQGPL-FMPPRGIQYFLGSYNNFTGYIPPSICGLANP 617

Query:   539 FYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596
               ++LSNN+L+G+IP CL    SSL  L++R N+  GS+P  F     L+ L+++ N LE
Sbjct:   618 LILDLSNNNLHGLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLE 677

Query:   597 GSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTR--F 654
             G +P SL  CS LE+L+V +N IN TFP WL +L +LQVL+LRSN F G + ++V    F
Sbjct:   678 GKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTL-HNVDGVWF 736

Query:   655 PFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKG 714
              FP LRI D+S+N+F G LP+ YF N+ A+          G+   +YG  Y S +L  KG
Sbjct:   737 GFPLLRITDVSHNDFVGTLPSDYFMNWTAISKSETELQYIGDPE-DYGY-YTSLVLMNKG 794

Query:   715 VNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQL 774
             V+MEM+++L  +T ID +GNK QG+IPE VG L  L  LN S N  TG IP SL NLT L
Sbjct:   795 VSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNL 854

Query:   775 ESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSDSYNGNMGLCG 834
             ESLD+S NK+ GEIP +L                 G IPQG QFH  +  SY GN G+ G
Sbjct:   855 ESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYG 914

Query:   835 FPLSEKCSNDEVTEPIQ---------DREEDDTWSLFDWKMAVMGYGSGFVIGLSMGYSV 885
               L + C +     P Q           EED+   L  W  A +G+  G V GL+MGY +
Sbjct:   915 SSLKDVCGDIHAPRPPQAVLPHSSSSSSEEDE---LISWIAACLGFAPGMVFGLTMGY-I 970

Query:   886 FATGWPKWIARMVERKQSRNTVIR 909
               +   +W      R++ R+T  R
Sbjct:   971 MTSHKHEWFMDTFGRRKGRSTRTR 994

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	920
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-74
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-67
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-36
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  263 bits (673), Expect = 2e-74
 Identities = 215/665 (32%), Positives = 299/665 (44%), Gaps = 127/665 (19%)

Query: 176 TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPK--VNWSSPLRFMD 233
            N S + S+DL    + G I   IFRLP +Q + LS N  L+   P      SS LR+++
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSLRYLN 124

Query: 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC 293
           L   NF GSIP   G++  L  LDLS N  SG IP+ + +   L+ LDL  N   G+IP 
Sbjct: 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 294 IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESID 353
              NLT L FL  ++NQL G I   + ++ SL  IYL YN+L+G IP  +     L  +D
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 354 LRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTL 413
           L  N LTG I +S+  L NL  L L  N LSG +   +F+ L+ L+ LDLS NSLS    
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLS---- 297

Query: 414 LPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLN 473
                                E P+ +     L+IL L  N   G IP            
Sbjct: 298 --------------------GEIPELVIQLQNLEILHLFSNNFTGKIP------------ 325

Query: 474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISV---SNNKLSGEIPL 530
                      +  LP   L+ L L SN   G IP      N ++V   S N L+GEIP 
Sbjct: 326 ---------VALTSLP--RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 531 SFCNMSSIFYVNLSNNSLNGMIPPCL-ANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
             C+  ++F + L +NSL G IP  L A  SL  + ++ N+F G +P  F+K        
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-------- 426

Query: 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY 649
                      L LV       LD+ NN + G   +    +  LQ+L L  N+F G +  
Sbjct: 427 -----------LPLVY-----FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S   F   +L  LDLS N+F+G +P +   +   +M                        
Sbjct: 471 S---FGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQ----------------------- 503

Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLE 769
                              + LS NK  G IP+ +     L  L+ SHN+L+G IP S  
Sbjct: 504 -------------------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 770 NLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGN 829
            +  L  LDLS N+++GEIP  L ++  L  +N+S N L G +P    F   ++ +  GN
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Query: 830 MGLCG 834
           + LCG
Sbjct: 605 IDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  242 bits (620), Expect = 2e-67
 Identities = 190/606 (31%), Positives = 288/606 (47%), Gaps = 66/606 (10%)

Query: 25  DSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILN 84
           D    + +W    D C W G+TC+  +  V  +DLS   + G I   S++F LP++Q +N
Sbjct: 43  DPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKI--SSAIFRLPYIQTIN 99

Query: 85  LAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDT 144
           L+ N  +       FT   +L +LNLS ++F+G IP     +  L +LDLS N       
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM------ 151

Query: 145 PVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPN 204
                                 +S E+P+ + + SSL  LDLG   L G IP ++  L +
Sbjct: 152 ----------------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 205 LQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFS 264
           L+ L L+ N+                         +G IP  LG +  L ++ L YNN S
Sbjct: 190 LEFLTLASNQ------------------------LVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 265 GHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHS 324
           G IP  +  L  L HLDL  N  TG IP    NL  L +L    N+L+GPI  S+  L  
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 325 LVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLS 384
           L+++ LS NSL+G IP  +     LE + L +N  TG I  +++ L  L  L L SN  S
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 385 GNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH 444
           G +   +  +  NL  LDLS N+L+      + SS     ++  S+    E P  L    
Sbjct: 346 GEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404

Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG-IELLPWK--NLRYLDLRSN 501
            L+ + L DN   G +P+    +    +  L++S+N L G I    W   +L+ L L  N
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKL--PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 502 SLKGSIP--FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN- 558
              G +P  F    L  + +S N+ SG +P    ++S +  + LS N L+G IP  L++ 
Sbjct: 463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 559 SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR 618
             L  LD+  N   G IP +FS+   L+ L+L+ NQL G +P +L N   L  +++ +N 
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582

Query: 619 INGTFP 624
           ++G+ P
Sbjct: 583 LHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  226 bits (577), Expect = 1e-61
 Identities = 198/622 (31%), Positives = 296/622 (47%), Gaps = 106/622 (17%)

Query: 208 LILSYNKNLTSVFPKV-NWSSPLRFMDLYG--CNFMGSIPASLGNLSQLTYLDLSYNNFS 264
           L+LS+  ++      + NW+S        G  CN          N S++  +DLS  N S
Sbjct: 33  LLLSFKSSINDPLKYLSNWNSSADVCLWQGITCN----------NSSRVVSIDLSGKNIS 82

Query: 265 GHIPSTLSNLQQLRHLDLSNNKFTGQIP-CIFANLTQLSFLDFSNNQLNGPISSSVSRLH 323
           G I S +  L  ++ ++LSNN+ +G IP  IF   + L +L+ SNN   G I      + 
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIP 140

Query: 324 SLVTIYLSYNSLNGTIPS--GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSN 381
           +L T+ LS N L+G IP+  G F+S  L+ +DL  N L G I NS++ L +L  L+L+SN
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSS--LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 382 NLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLR 441
            L G +   +  ++K+L  + L +N+LS                                
Sbjct: 199 QLVGQIPREL-GQMKSLKWIYLGYNNLS-------------------------------- 225

Query: 442 TQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG---IELLPWKNLRYLDL 498
                           G IP  I   G  +LNHL+L +N LTG     L   KNL+YL L
Sbjct: 226 ----------------GEIPYEIG--GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 499 RSNSLKGSIPFLPPSL----NFISV--SNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI 552
             N L G IP   PS+      IS+  S+N LSGEIP     + ++  ++L +N+  G I
Sbjct: 268 YQNKLSGPIP---PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 553 PPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611
           P  L +   L  L +  N F G IP+   K + LT+L+L+ N L G +P  L +   L  
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384

Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
           L + +N + G  P  LGA   L+ + L+ N F G +    T+ P   +  LD+SNN   G
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL--VYFLDISNNNLQG 442

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL 731
            + +R +      M     +   G +  ++G++              +E        +DL
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK-------------RLEN-------LDL 482

Query: 732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ 791
           S N+F G +P  +G L+ L  L  S NKL+G IP  L +  +L SLDLS N+++G+IP  
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Query: 792 LTSLNFLQVLNLSQNQLVGPIP 813
            + +  L  L+LSQNQL G IP
Sbjct: 543 FSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (376), Expect = 1e-36
 Identities = 111/306 (36%), Positives = 158/306 (51%), Gaps = 26/306 (8%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           LDLS + L G IP    +  L +L+IL+L  N+F    I    T  P L  L L  + FS
Sbjct: 289 LDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFT-GKIPVALTSLPRLQVLQLWSNKFS 345

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLG---------------------LDTPVLKALVQNLN 155
           G+IP  +   + L  LDLS N+  G                     L+  + K+L     
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL-GACR 404

Query: 156 ELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN 215
            L+ + L     S E+PS  T L  +  LD+ N  LQG I    + +P+LQ L L+ NK 
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ 275
              + P    S  L  +DL    F G++P  LG+LS+L  L LS N  SG IP  LS+ +
Sbjct: 465 FGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335
           +L  LDLS+N+ +GQIP  F+ +  LS LD S NQL+G I  ++  + SLV + +S+N L
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 336 NGTIPS 341
           +G++PS
Sbjct: 584 HGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.9 bits (192), Expect = 9e-15
 Identities = 46/116 (39%), Positives = 62/116 (53%), Gaps = 4/116 (3%)

Query: 729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI 788
           + L     +G IP  + KL  L+ +N S N + G IP SL ++T LE LDLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 789 PWQLTSLNFLQVLNLSQNQLVGPIPQ---GKQFHTFSSDSYNGNMGLCGFPLSEKC 841
           P  L  L  L++LNL+ N L G +P    G+  H  +S ++  N GLCG P    C
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR-ASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.2 bits (190), Expect = 2e-14
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 24/109 (22%)

Query: 184 LDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSI 243
           L L N GL+G IP +I +L +LQ++ LS N                        +  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN------------------------SIRGNI 458

Query: 244 PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
           P SLG+++ L  LDLSYN+F+G IP +L  L  LR L+L+ N  +G++P
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 8e-13
 Identities = 35/93 (37%), Positives = 50/93 (53%)

Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
           L L      G IP+ +S L+ L+ ++LS N   G IP    ++T L  LD S N  NG I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 316 SSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
             S+ +L SL  + L+ NSL+G +P+ L    L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 558 NSSLWFLD-MRMNN--FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDV 614
               WF+D + ++N    G IP   SK   L  +NL+ N + G++P SL + + LEVLD+
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 615 GNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651
             N  NG+ P  LG L+ L++L L  N   G +  ++
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 1e-11
 Identities = 35/84 (41%), Positives = 48/84 (57%)

Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSI 363
           L   N  L G I + +S+L  L +I LS NS+ G IP  L +   LE +DL  N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 364 SNSISELVNLIDLSLSSNNLSGNV 387
             S+ +L +L  L+L+ N+LSG V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 116/370 (31%), Positives = 162/370 (43%), Gaps = 43/370 (11%)

Query: 89  DFNYSYISPGFTRFPNLAHLNLSVSSFSGQI-PAEISHLSKLVSLDLSGNSQLGLDTPVL 147
                           +  L L++SS +  + P+ +S L  L  L  SG S L       
Sbjct: 31  QSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDG----- 85

Query: 148 KALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQN 207
              + NL  L  L LN   +     S L  L++LTSLDL N         NI  +P L  
Sbjct: 86  SENLLNLLPLPSLDLNLNRL-RSNISELLELTNLTSLDLDN--------NNITDIPPLIG 136

Query: 208 LILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI 267
           L+ S  K L     K+                  S+P+ L NL  L  LDLS+N+ S  +
Sbjct: 137 LLKSNLKELDLSDNKI-----------------ESLPSPLRNLPNLKNLDLSFNDLS-DL 178

Query: 268 PSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVT 327
           P  LSNL  L +LDLS NK +  +P     L+ L  LD SNN +   + SS+S L +L  
Sbjct: 179 PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236

Query: 328 IYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNV 387
           + LS N L   +P  +     LE++DL NNQ+  S  +S+  L NL +L LS N+LS   
Sbjct: 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSN-- 291

Query: 388 ELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQ 447
            L + A L  LL L L+      +  L +NS    L   ++ S   +  P+ L     L 
Sbjct: 292 ALPLIALLLLLLELLLNLLLTLKALELKLNS---ILLNNNILSNGETSSPEALSILESLN 348

Query: 448 ILDLSDNQIR 457
            L   DN + 
Sbjct: 349 NLWTLDNALD 358

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 60/251 (23%), Positives = 89/251 (35%), Gaps = 45/251 (17%)

Query: 145 PVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIP---ENIFR 201
           P LK L  +LNE   +          +   LT    L  LDL +  L        E++ R
Sbjct: 51  PSLKELCLSLNETGRIPRGLQS----LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR 106

Query: 202 LPNLQNLILSYN-----------KNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNL 250
             +LQ L L+ N           K L  + P       L  + L      G+   +L   
Sbjct: 107 SSSLQELKLNNNGLGDRGLRLLAKGLKDLPP------ALEKLVLGRNRLEGASCEALAKA 160

Query: 251 ----SQLTYLDLSYNNFSG----HIPSTLSNLQQLRHLDLSNNKFT----GQIPCIFANL 298
                 L  L+L+ N         +   L     L  LDL+NN  T      +    A+L
Sbjct: 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220

Query: 299 TQLSFLDFSNNQL-NGPI----SSSVSRLHSLVTIYLSYNSLN----GTIPSGLFTSPLL 349
             L  L+  +N L +       S+ +S   SL+T+ LS N +       +   L     L
Sbjct: 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL 280

Query: 350 ESIDLRNNQLT 360
             +DLR N+  
Sbjct: 281 LELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 6e-10
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 26/111 (23%)

Query: 496 LDLRSNSLKGSIPFLPPSLNF---ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI 552
           L L +  L+G IP     L     I++S N + G IP S  +++S+  ++LS NS N   
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN--- 479

Query: 553 PPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL 603
                               GSIP++  + + L ILNLN N L G VP +L
Sbjct: 480 --------------------GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 42  WDGVTC--DMMTGH--VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISP 97
           W G  C  D   G   + GL L    L G IP+D S   L HLQ +NL+  +     I P
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLS-GNSIRGNIPP 460

Query: 98  GFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLG 141
                 +L  L+LS +SF+G IP  +  L+ L  L+L+GNS  G
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 728 TIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE 787
           +I+LSGN  +G IP  +G + SL+ L+ S+N   G IP SL  LT L  L+L+ N ++G 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 788 IPWQL-------TSLNF 797
           +P  L        S NF
Sbjct: 506 VPAALGGRLLHRASFNF 522

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 57/251 (22%), Positives = 97/251 (38%), Gaps = 45/251 (17%)

Query: 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC 293
               N  G IP  L +L                    L+    L+ LDLS+N        
Sbjct: 57  CLSLNETGRIPRGLQSL-----------------LQGLTKGCGLQELDLSDNALGPDGCG 99

Query: 294 IFANLTQLSFL---DFSNNQLN---GPISSSV--SRLHSLVTIYLSYNSLNGT----IPS 341
           +  +L + S L     +NN L      + +        +L  + L  N L G     +  
Sbjct: 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159

Query: 342 GLFTSPLLESIDLRNNQLTG----SISNSISELVNLIDLSLSSNNLS--GNVELYM-FAE 394
            L  +  L+ ++L NN +      +++  +    NL  L L++N L+  G   L    A 
Sbjct: 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219

Query: 395 LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSM----LSLSSCNISE-----FPDFLRTQHR 445
           LK+L  L+L  N+L+ +    + S+    ++    LSLS  +I++       + L  +  
Sbjct: 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279

Query: 446 LQILDLSDNQI 456
           L  LDL  N+ 
Sbjct: 280 LLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
           G IP  +  L  L  ++LS N+  G+IP +L ++  L  LDLS N F G IP     LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 301 LSFLDFSNNQLNGPISSSV 319
           L  L+ + N L+G + +++
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 5e-08
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 541 VNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599
           + L N  L G IP  ++    L  +++  N+  G+IP +    + L +L+L+ N   GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 600 PLSLVNCSFLEVLDVGNNRINGTFPAWLGAL 630
           P SL   + L +L++  N ++G  PA LG  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.7 bits (134), Expect = 6e-08
 Identities = 79/317 (24%), Positives = 117/317 (36%), Gaps = 36/317 (11%)

Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
            L  L+ LT LDL  NN +   P        L+ LDLS+NK    +P    NL  L  LD
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169

Query: 306 FSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISN 365
            S N L+                          +P  L     L ++DL  N+++  +  
Sbjct: 170 LSFNDLS-------------------------DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203

Query: 366 SISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSM 425
            I  L  L +L LS+N++     L   + LKNL GL+LS+N L        N     L  
Sbjct: 204 EIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNL--SNLET 259

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
           L LS+  IS     L +   L+ LDLS N +   +P     +    L    L       +
Sbjct: 260 LDLSNNQISSI-SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318

Query: 486 ELLPWKNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL 543
           +L     L   ++ SN    S   L    SLN +   +N L       +   +     +L
Sbjct: 319 KLN--SILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSL 376

Query: 544 SNNSLNGMIPPCLANSS 560
            +     +       + 
Sbjct: 377 LDLVKKHVNQLLEKVNY 393

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 252 QLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311
            L  LDLS N  +         L  L+ LDLS N  T   P  F+ L  L  LD S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGP 811
           GL   +  L G IP  +  L  L+S++LS N + G IP  L S+  L+VL+LS N   G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 812 IPQ 814
           IP+
Sbjct: 482 IPE 484

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 52/141 (36%)

Query: 108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDM 167
           L L      G IP +IS L  L S++LSGNS  G                          
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-------------------------- 456

Query: 168 SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSS 227
              +P  L +++SL  LDL      GSIPE++ +L +L+  IL+ N N  S         
Sbjct: 457 --NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR--ILNLNGNSLS--------- 503

Query: 228 PLRFMDLYGCNFMGSIPASLG 248
                        G +PA+LG
Sbjct: 504 -------------GRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK 783
            ++DLS N+           L +LK L+ S N LT + P +   L  L SLDLS N 
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 80/287 (27%), Positives = 120/287 (41%), Gaps = 40/287 (13%)

Query: 97  PGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQL-GLDTPVLKALVQNLN 155
           P  +   NL  L LS  S   ++P+ I +L+KL  LD+S    L  L T +      NL 
Sbjct: 651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI------NLK 704

Query: 156 ELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN 215
            L  L L+        P   TN+S    LDL    ++   P N+ RL NL  LIL     
Sbjct: 705 SLYRLNLSGCSRLKSFPDISTNIS---WLDLDETAIE-EFPSNL-RLENLDELIL-CEMK 758

Query: 216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ 275
              ++ +V   +PL          M  +  S      LT L LS       +PS++ NL 
Sbjct: 759 SEKLWERVQPLTPL----------MTMLSPS------LTRLFLSDIPSLVELPSSIQNLH 802

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN-NQLNG--PISSSVSRLHSLVTIYLSY 332
           +L HL++ N      +P    NL  L  LD S  ++L     IS+++S L       LS 
Sbjct: 803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDL------NLSR 855

Query: 333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLS 379
             +   +P  +     L  +D+        +S +IS+L +L  +  S
Sbjct: 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 15/212 (7%)

Query: 71  DSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLV 130
            S L +LP+L+ L+L+FN  + S +    +   NL +L+LS +  S  +P EI  LS L 
Sbjct: 156 PSPLRNLPNLKNLDLSFN--DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212

Query: 131 SLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCG 190
            LDLS NS + L + +      +  EL    L       ++P  + NLS+L +LDL N  
Sbjct: 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE------DLPESIGNLSNLETLDLSNN- 265

Query: 191 LQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNL 250
            Q S   ++  L NL+ L LS N    +    +     L    L            L   
Sbjct: 266 -QISSISSLGSLTNLRELDLSGNSLSNA--LPLIALLLLLLELLLNLLLT-LKALELKLN 321

Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDL 282
           S L   ++  N      P  LS L+ L +L  
Sbjct: 322 SILLNNNILSNGE-TSSPEALSILESLNNLWT 352

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 229 LRFMDLYGCNFMGSIP-ASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF 287
           L+ +DL   N +  IP  +   L  L  LDLS NN +   P   S L  LR LDLS N  
Sbjct: 2   LKSLDL-SNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335
            L+ LDLSNN+ T      F  L  L  LD S N L      + S L SL ++ LS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 77/266 (28%), Positives = 121/266 (45%), Gaps = 17/266 (6%)

Query: 348 LLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS 407
            L S+DL  N+L  +IS  + EL NL  L L +NN++    L    +  NL  LDLS N 
Sbjct: 94  PLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLK-SNLKELDLSDNK 151

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNV 467
           +   +L     + P L  L LS  ++S+ P  L     L  LDLS N+I   +P  I   
Sbjct: 152 IE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL- 207

Query: 468 GKDTLNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKGSIPFL--PPSLNFISVSNNK 523
               L  L+LS+N +  +   L   KNL  L+L +N L+     +    +L  + +SNN+
Sbjct: 208 -LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266

Query: 524 LSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSK-G 582
           +S     S  +++++  ++LS NSL+  +P     + L  L   + N   ++     K  
Sbjct: 267 IS--SISSLGSLTNLRELDLSGNSLSNALP---LIALLLLLLELLLNLLLTLKALELKLN 321

Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSF 608
           S L   N+  N    S     +  S 
Sbjct: 322 SILLNNNILSNGETSSPEALSILESL 347

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 25/114 (21%)

Query: 348 LLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS 407
            ++ + L N  L G I N IS+L +L  ++LS N++ GN+       + +L  LDLS+NS
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNS 477

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIP 461
                    N S P  S+  L+S               L+IL+L+ N + G +P
Sbjct: 478 F--------NGSIPE-SLGQLTS---------------LRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
           H+  ++LS + + G+IP   SL S+  L++L+L++N FN S I     +  +L  LNL+ 
Sbjct: 443 HLQSINLSGNSIRGNIPP--SLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNG 499

Query: 113 SSFSGQIPAEI 123
           +S SG++PA +
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSL 768
             +DLS N F G IPE +G+L SL+ LN + N L+G +P +L
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 67/333 (20%), Positives = 98/333 (29%), Gaps = 96/333 (28%)

Query: 250 LSQLTYLDLSYNNFSGH----IPSTLSNLQQLRHLDLSNNKFTGQIP-------CIFANL 298
           L  L  L L  N         + S L     L+ L LS N  TG+IP             
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKG 80

Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQ 358
             L  LD S+N L       +  L                       S  L+ + L NN 
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLR---------------------SSSLQELKLNNNG 119

Query: 359 LTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNS 418
           L           + L+   L                   L  L L  N L         S
Sbjct: 120 LGDRG-------LRLLAKGLKDLPP-------------ALEKLVLGRNRLE------GAS 153

Query: 419 SFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRG-GIPNWIWNVGKDT--LNHL 475
                  L  +                L+ L+L++N I   GI   +    K    L  L
Sbjct: 154 CEALAKALRANR--------------DLKELNLANNGIGDAGIRA-LAEGLKANCNLEVL 198

Query: 476 NLSHNFLTGIE-------LLPWKNLRYLDLRSNS--------LKGSIPFLPPSLNFISVS 520
           +L++N LT          L   K+L  L+L  N+        L  ++     SL  +S+S
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 521 NNKLSGEIPLSFC----NMSSIFYVNLSNNSLN 549
            N ++ +             S+  ++L  N   
Sbjct: 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 449 LDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG---IELLPWKNLRYLDLRSNSLKG 505
           L L +  +RG IPN I  +    L  +NLS N + G     L    +L  LDL  NS  G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 506 SIPF---LPPSLNFISVSNNKLSGEIP 529
           SIP       SL  ++++ N LSG +P
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ-LTSLNFLQVLNLSQNQ 807
           +LK L+ S+N+LT +   + + L  L+ LDLS N +   I  +  + L  L+ L+LS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSGNN 59

Query: 808 L 808
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 8e-04
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 600 PLSLVNCSF--------LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651
           P S  +C F        ++ L + N  + G  P  +  L  LQ + L  N   G I  S+
Sbjct: 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL 462

Query: 652 TRFPFPKLRILDLSNNEFTGVLP 674
                  L +LDLS N F G +P
Sbjct: 463 GSIT--SLEVLDLSYNSFNGSIP 483

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 8e-04
 Identities = 70/286 (24%), Positives = 103/286 (36%), Gaps = 57/286 (19%)

Query: 423 LSMLSLSSCNISE-----FPDFLRTQHRLQILDLSDNQIRGGIPNW---IWNVGKDT-LN 473
           L +L L    + E         LR Q  L+ L LS N+           +  + K   L 
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84

Query: 474 HLNLSHNFLTG------IELLPWKNLRYLDLRSNSLKGSI--------PFLPPSLNFISV 519
            L+LS N L          LL   +L+ L L +N L              LPP+L  + +
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144

Query: 520 SNNKLSGE--IPLS--FCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSI 575
             N+L G     L+        +  +NL+NN +       LA        ++ N      
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA------EGLKAN------ 192

Query: 576 PQTFSKGSRLTILNLNDNQL--EGSVPLS--LVNCSFLEVLDVGNNRINGT-----FPAW 626
                    L +L+LN+N L  EG+  L+  L +   LEVL++G+N +          A 
Sbjct: 193 -------CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245

Query: 627 LGALSELQVLILRSNRF--HGPITYSVTRFPFPKLRILDLSNNEFT 670
           L     L  L L  N     G    +        L  LDL  N+F 
Sbjct: 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
           L+S+DL NN+LT     +   L NL  L LS NNL+  +    F+ L +L  LDLS N+L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 324 SLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN 382
           +L ++ LS N L   IP G F   P L+ +DL  N LT     + S L +L  L LS NN
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 383 L 383
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	920
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
PLN03150	623	hypothetical protein; Provisional	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
PLN03150	623	hypothetical protein; Provisional	99.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG4341	483	consensus F-box protein containing LRR [General fu	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.94
KOG4341	483	consensus F-box protein containing LRR [General fu	97.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.92
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.35
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.33
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.99
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.8
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.14
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.98
KOG4308	478	consensus LRR-containing protein [Function unknown	92.05
KOG4308	478	consensus LRR-containing protein [Function unknown	91.58
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.58
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.35
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.45
smart00370	26	LRR Leucine-rich repeats, outliers.	85.45
smart00370	26	LRR Leucine-rich repeats, outliers.	84.03
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.03
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	83.63

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-69  Score=676.52  Aligned_cols=578  Identities=36%  Similarity=0.611  Sum_probs=397.8

Q ss_pred             CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCC
Q 048289            1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHL   80 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L   80 (920)
                      ||++||+.+.++.+              .+++|+..++||.|+||+|+. .++|+.|+|+++.+.|.++.  .+..+++|
T Consensus        33 ~l~~~~~~~~~~~~--------------~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L   95 (968)
T PLN00113         33 LLLSFKSSINDPLK--------------YLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYI   95 (968)
T ss_pred             HHHHHHHhCCCCcc--------------cCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCC
Confidence            68899999876543              689998888999999999985 47999999999999988776  78888888


Q ss_pred             CEEECCCCCCCCCCCCCcC-CCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCE
Q 048289           81 QILNLAFNDFNYSYISPGF-TRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE  159 (920)
Q Consensus        81 ~~L~Ls~~~~~~~~i~~~~-~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~  159 (920)
                      ++|+|++|.+.+. +|..+ ..+++|++|+|++|.+++.+|.  +.+++|++|++++|.                     
T Consensus        96 ~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~---------------------  151 (968)
T PLN00113         96 QTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM---------------------  151 (968)
T ss_pred             CEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc---------------------
Confidence            8888888888765 66554 4788888888888888776664  345566666666553                     


Q ss_pred             EEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcC
Q 048289          160 LVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF  239 (920)
Q Consensus       160 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~  239 (920)
                             +++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|                        .+
T Consensus       152 -------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n------------------------~l  200 (968)
T PLN00113        152 -------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN------------------------QL  200 (968)
T ss_pred             -------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC------------------------CC
Confidence                   33345555556666666666666655555555555555555555544                        23


Q ss_pred             cccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccc
Q 048289          240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV  319 (920)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  319 (920)
                      .+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+
T Consensus       201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  280 (968)
T PLN00113        201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI  280 (968)
T ss_pred             cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence            33444445555555555555555555555555555555555555555555555555555555555555555544444444


Q ss_pred             cCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCc
Q 048289          320 SRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLL  399 (920)
Q Consensus       320 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  399 (920)
                      ..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.                 
T Consensus       281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-----------------  343 (968)
T PLN00113        281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-----------------  343 (968)
T ss_pred             hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC-----------------
Confidence            444444444444444444444444444444444444444443333333333333333333332                 


Q ss_pred             eEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCC
Q 048289          400 GLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH  479 (920)
Q Consensus       400 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~  479 (920)
                                                                              +.+.+|..+.  .+          
T Consensus       344 --------------------------------------------------------l~~~~p~~l~--~~----------  355 (968)
T PLN00113        344 --------------------------------------------------------FSGEIPKNLG--KH----------  355 (968)
T ss_pred             --------------------------------------------------------CcCcCChHHh--CC----------
Confidence                                                                    2222222221  11          


Q ss_pred             CcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCccccccc
Q 048289          480 NFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS  559 (920)
Q Consensus       480 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~  559 (920)
                                                      ++|+.|++++|++++.+|..++.+++|+.|++++|++           
T Consensus       356 --------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l-----------  392 (968)
T PLN00113        356 --------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL-----------  392 (968)
T ss_pred             --------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe-----------
Confidence                                            1233333444444444455555555555555555554           


Q ss_pred             ccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEcc
Q 048289          560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR  639 (920)
Q Consensus       560 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  639 (920)
                                  .+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++|++|+++
T Consensus       393 ------------~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        393 ------------EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             ------------cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence                        44555566667777777777777777777777777888888888888887777777778888888888


Q ss_pred             CceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhh
Q 048289          640 SNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEM  719 (920)
Q Consensus       640 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  719 (920)
                      +|++.+.+|...   ..++|+.||+++|++++.+|..+ .+                                       
T Consensus       461 ~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~~---------------------------------------  497 (968)
T PLN00113        461 RNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-GS---------------------------------------  497 (968)
T ss_pred             CceeeeecCccc---ccccceEEECcCCccCCccChhh-hh---------------------------------------
Confidence            888877777643   35789999999999998888542 22                                       


Q ss_pred             hhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCC
Q 048289          720 EKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQ  799 (920)
Q Consensus       720 ~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~  799 (920)
                         ++.|+.|+|++|.+++.+|+.++++++|++|+|++|.++|.+|..++.+++|++|||++|+++|.+|..+.++++|+
T Consensus       498 ---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  574 (968)
T PLN00113        498 ---LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV  574 (968)
T ss_pred             ---hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence               35678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCcccCCCCCCCCCCCCCcccccCCcCCCCCC
Q 048289          800 VLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFP  836 (920)
Q Consensus       800 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~  836 (920)
                      ++++++|+++|.+|..++|.+|...+|.||+++||.+
T Consensus       575 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             EEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.1e-55  Score=546.21  Aligned_cols=495  Identities=34%  Similarity=0.557  Sum_probs=343.5

Q ss_pred             CCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccC-CCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEcc
Q 048289          157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY  235 (920)
Q Consensus       157 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  235 (920)
                      ++.|+++++.+++.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++| .+.+.+|. +.+++|++|+++
T Consensus        71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~-~~l~~L~~L~Ls  148 (968)
T PLN00113         71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR-GSIPNLETLDLS  148 (968)
T ss_pred             EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc-cccCCCCEEECc
Confidence            44444444455555566666666666666666666666665543 5666666666666 44443332 234445555555


Q ss_pred             CCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcc
Q 048289          236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI  315 (920)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  315 (920)
                      +|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+
T Consensus       149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence            55555555555555555555555555555445555555555555555555555444555555555555555555444444


Q ss_pred             cccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhc
Q 048289          316 SSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAEL  395 (920)
Q Consensus       316 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  395 (920)
                                              |..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.         
T Consensus       229 ------------------------p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---------  275 (968)
T PLN00113        229 ------------------------PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP---------  275 (968)
T ss_pred             ------------------------ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc---------
Confidence                                    44444444455555555544444455555555555555554444321         


Q ss_pred             CCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEE
Q 048289          396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHL  475 (920)
Q Consensus       396 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L  475 (920)
                                                              +|..+..+++|+.|++++|.+.+.+|..+.  .++     
T Consensus       276 ----------------------------------------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~-----  308 (968)
T PLN00113        276 ----------------------------------------IPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQ-----  308 (968)
T ss_pred             ----------------------------------------CchhHhhccCcCEEECcCCeeccCCChhHc--CCC-----
Confidence                                                    122233333344444444444444443332  121     


Q ss_pred             ECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCccc
Q 048289          476 NLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPC  555 (920)
Q Consensus       476 ~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  555 (920)
                                                           +|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..
T Consensus       309 -------------------------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  351 (968)
T PLN00113        309 -------------------------------------NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN  351 (968)
T ss_pred             -------------------------------------CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence                                                 3334444444445555666666777777777777777777776


Q ss_pred             ccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCC
Q 048289          556 LANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ  634 (920)
Q Consensus       556 ~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  634 (920)
                      +.... |+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus       352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  431 (968)
T PLN00113        352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY  431 (968)
T ss_pred             HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence            66655 78888888888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEcc
Q 048289          635 VLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKG  714 (920)
Q Consensus       635 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (920)
                      .|++++|.+.+.++...  ..+++|+.|++++|++.+.+|..+ .                                   
T Consensus       432 ~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~-----------------------------------  473 (968)
T PLN00113        432 FLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G-----------------------------------  473 (968)
T ss_pred             EEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-----------------------------------
Confidence            99999999999887655  468999999999999998888432 0                                   


Q ss_pred             chhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccC
Q 048289          715 VNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS  794 (920)
Q Consensus       715 ~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~  794 (920)
                              ...|+.||+++|++++.+|..++++++|+.|+|++|.+++.+|+.++++++|++|+|++|.++|.+|..++.
T Consensus       474 --------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  545 (968)
T PLN00113        474 --------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE  545 (968)
T ss_pred             --------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence                    246799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeccCCcccCCCCCCC
Q 048289          795 LNFLQVLNLSQNQLVGPIPQGK  816 (920)
Q Consensus       795 l~~L~~L~ls~N~l~g~iP~~~  816 (920)
                      +++|+.||+++|+++|.+|...
T Consensus       546 l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        546 MPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             cccCCEEECCCCcccccCChhH
Confidence            9999999999999999999753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-36  Score=314.03  Aligned_cols=362  Identities=27%  Similarity=0.362  Sum_probs=210.7

Q ss_pred             CCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccC
Q 048289          253 LTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY  332 (920)
Q Consensus       253 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  332 (920)
                      -+.|++++|.+....+..|.++++|+++++.+|.++ .+|..-....+|+.|+|.+|.|+.+-...+..++.|+.|||+.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            345777777777766777777777777777777776 5666555555677777777777776667777777777777777


Q ss_pred             ccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCc
Q 048289          333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLST  412 (920)
Q Consensus       333 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  412 (920)
                      |.++..-...+..-.++++|+|++|.|+......|..+.+|..|.|+.|+++ .++...|.++++|+.|+|..|++...+
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence            7776333344555577888888888888777777888888888888888887 777788888888888888888776443


Q ss_pred             cCCCCCCCCcCceEeeeccCCcCCc-hhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCc
Q 048289          413 LLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWK  491 (920)
Q Consensus       413 ~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  491 (920)
                      .. .+.++++|+.|.+..|++..+. ..|..+.++++|+|+.|++...-..|++  ++.+|+.|++++|.|..+....|.
T Consensus       238 ~l-tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  238 GL-TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             hh-hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc--ccchhhhhccchhhhheeecchhh
Confidence            22 2335556666666666665554 2445555666666666665544444444  444444444444444444332221


Q ss_pred             ccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc
Q 048289          492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN  570 (920)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~  570 (920)
                                        ..++|++|+|++|+|+...+.+|..+..|++|.|++|++...--..|...+ |++|||++|.
T Consensus       315 ------------------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  315 ------------------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             ------------------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence                              122444444444444444444454455555555555544433333333333 4444444444


Q ss_pred             ccccCC---ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEc
Q 048289          571 FHGSIP---QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL  638 (920)
Q Consensus       571 l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  638 (920)
                      ++..+.   ..|.++++|+.|++.+|++..+.-.+|.++..|+.|||.+|.|...-|+.|..+ .|+.|.+
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            443332   234444444444444444443333444444444444444444444444444444 4444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5e-39  Score=323.60  Aligned_cols=483  Identities=29%  Similarity=0.401  Sum_probs=248.4

Q ss_pred             EEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEE
Q 048289           54 VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLD  133 (920)
Q Consensus        54 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~  133 (920)
                      ...+++++|.+... .+  .+.++..|.+|++.+|++..  +|++++.+..++.|+.+.|.+. .+|+.++.+..|+.|+
T Consensus        47 l~~lils~N~l~~l-~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEVL-RE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhhc-cH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            33455555544321 11  34444444444444444433  4444444444444444444444 4444444444444444


Q ss_pred             cCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 048289          134 LSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYN  213 (920)
Q Consensus       134 Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  213 (920)
                      .++|..                            . ++++.++.+..|+.++..+|+++ ..|++++.+.+|..+++.+|
T Consensus       121 ~s~n~~----------------------------~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n  170 (565)
T KOG0472|consen  121 CSSNEL----------------------------K-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN  170 (565)
T ss_pred             ccccce----------------------------e-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc
Confidence            444422                            1 33444555555666666666555 45555555555555555555


Q ss_pred             CCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchh
Q 048289          214 KNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC  293 (920)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  293 (920)
                                              .+....|..+. ++.|++||.-.|.++ .+|..++.+.+|.-|++..|++. ..| 
T Consensus       171 ------------------------~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-  222 (565)
T KOG0472|consen  171 ------------------------KLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-  222 (565)
T ss_pred             ------------------------chhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-
Confidence                                    44433333333 566666666666555 45666666666666666666665 344 


Q ss_pred             hhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCC
Q 048289          294 IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNL  373 (920)
Q Consensus       294 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  373 (920)
                      .|..|..|++++++.|++.........+++++..||+..|+++ ..|+++.-+.+|++||+++|.++ ..|..++++ +|
T Consensus       223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HL  299 (565)
T ss_pred             CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-ee
Confidence            4666666666666666665332233335666666666666665 56666666666666777766666 344456666 66


Q ss_pred             CEEEccCCcCCCcchhhhhh-----hcCCCce----EEcCCCccccCccCC-CCCCCCcCceEeeeccCCcCCchhhhcc
Q 048289          374 IDLSLSSNNLSGNVELYMFA-----ELKNLLG----LDLSHNSLSLSTLLP-VNSSFPYLSMLSLSSCNISEFPDFLRTQ  443 (920)
Q Consensus       374 ~~L~L~~n~l~~~~~~~~~~-----~l~~L~~----L~Ls~n~l~~~~~~~-~~~~~~~L~~L~l~~~~l~~lp~~l~~~  443 (920)
                      +.|.+.+|.+. ++....+.     -++.|+.    =.++..+-....... ....+                 ......
T Consensus       300 ~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~-----------------~~~~~~  361 (565)
T KOG0472|consen  300 KFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF-----------------PDIYAI  361 (565)
T ss_pred             eehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc-----------------cchhhh
Confidence            66767666653 22111111     1111111    001111000000000 00000                 111223


Q ss_pred             cccceeccCCCccCCCCCchhhccCC-CCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCc
Q 048289          444 HRLQILDLSDNQIRGGIPNWIWNVGK-DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNN  522 (920)
Q Consensus       444 ~~L~~L~Ls~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n  522 (920)
                      .+.+.|++++-+++ .+|+..|...- .-...++++.|++..++..- ..++                 .-++.+.+++|
T Consensus       362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L-~~lk-----------------elvT~l~lsnn  422 (565)
T KOG0472|consen  362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL-VELK-----------------ELVTDLVLSNN  422 (565)
T ss_pred             hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh-HHHH-----------------HHHHHHHhhcC
Confidence            33444444444444 33433332111 11333444444443332110 0000                 01122333444


Q ss_pred             eecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCc
Q 048289          523 KLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL  601 (920)
Q Consensus       523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  601 (920)
                      .+. .+|..++.+++|..|++++|-+. .+|..++... |+.|+++.|+|. ..|.+...+..++.+-.++|++....|+
T Consensus       423 ~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~  499 (565)
T KOG0472|consen  423 KIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS  499 (565)
T ss_pred             ccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence            333 56666777777777777777665 4555555544 777777777765 5566666666666666777777766666


Q ss_pred             cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceee
Q 048289          602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH  644 (920)
Q Consensus       602 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  644 (920)
                      .+.++.+|.+||+.+|.+. .+|..++++++|++|++.+|+|.
T Consensus       500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            6777777778888777777 66777777777777777777665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-38  Score=319.06  Aligned_cols=493  Identities=25%  Similarity=0.336  Sum_probs=255.1

Q ss_pred             CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCc
Q 048289          180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS  259 (920)
Q Consensus       180 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  259 (920)
                      .|+.+.+++|.+. .+.+.+.++..|.+|++++| ......++++.+..++.++.+.|++. .+|..++.+.+|..++++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            3444444444443 23333444444444444444 23333333333333333333333333 344555555555555555


Q ss_pred             CCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccC
Q 048289          260 YNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI  339 (920)
Q Consensus       260 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  339 (920)
                      .|.+. .+|+.++.+-.|+.++..+|+++ ..|+.+..+.+|..+++.+|++....|..+. ++.|+++|...|.+. .+
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence            55554 34445555555555555555555 3444455555555555555555533333332 555555555555554 55


Q ss_pred             CccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCC
Q 048289          340 PSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS  419 (920)
Q Consensus       340 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  419 (920)
                      |+.++.+.+|+-|++..|++. ..| .|..|..|+++.++.|.+. .++.+...+                         
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~-------------------------  250 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKH-------------------------  250 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcc-------------------------
Confidence            555555555555555555555 233 4555555555555555554 333333333                         


Q ss_pred             CCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecc
Q 048289          420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLR  499 (920)
Q Consensus       420 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~  499 (920)
                      ++++..|++++|+++++|+.+.-+.+|++||+|+|.+++ .|..++  .+ .|+.|.+.+|.+..+.....         
T Consensus       251 L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLg--nl-hL~~L~leGNPlrTiRr~ii---------  317 (565)
T KOG0472|consen  251 LNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLG--NL-HLKFLALEGNPLRTIRREII---------  317 (565)
T ss_pred             cccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccc--cc-eeeehhhcCCchHHHHHHHH---------
Confidence            334444444455555667777777777777777777763 344333  22 44444444444333211000         


Q ss_pred             cCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccc
Q 048289          500 SNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF  579 (920)
Q Consensus       500 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~  579 (920)
                                           .+.    -...+   +.|+. .+..-.++..     ...+-..-+    ...+..|. .
T Consensus       318 ---------------------~~g----T~~vL---KyLrs-~~~~dglS~s-----e~~~e~~~t----~~~~~~~~-~  358 (565)
T KOG0472|consen  318 ---------------------SKG----TQEVL---KYLRS-KIKDDGLSQS-----EGGTETAMT----LPSESFPD-I  358 (565)
T ss_pred             ---------------------ccc----HHHHH---HHHHH-hhccCCCCCC-----cccccccCC----CCCCcccc-h
Confidence                                 000    00000   11111 0000000000     000000000    00000111 1


Q ss_pred             cCCCcccEEEccCCccccccCccccCCC---CCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCC
Q 048289          580 SKGSRLTILNLNDNQLEGSVPLSLVNCS---FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF  656 (920)
Q Consensus       580 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  656 (920)
                      ...-+.+.|++++-+++ .+|+......   -....+++.|++. .+|..+..+..+.+.-+..|+..+.+|..+  +.+
T Consensus       359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l--~~l  434 (565)
T KOG0472|consen  359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL--SQL  434 (565)
T ss_pred             hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH--Hhh
Confidence            12234455555555555 2332221111   1455555555555 445544444444333233333333333333  345


Q ss_pred             CCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcC
Q 048289          657 PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKF  736 (920)
Q Consensus       657 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l  736 (920)
                      ++|..|+|++|.+. .+|.++++                                           +..|+.||+|+|+|
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~e~~~-------------------------------------------lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPEEMGS-------------------------------------------LVRLQTLNLSFNRF  470 (565)
T ss_pred             hcceeeecccchhh-hcchhhhh-------------------------------------------hhhhheeccccccc
Confidence            66777777776664 56655421                                           34478999999988


Q ss_pred             CCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc
Q 048289          737 QGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV  809 (920)
Q Consensus       737 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  809 (920)
                      . .+|+.+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++.+|++.
T Consensus       471 r-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  471 R-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             c-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            7 78999999999998888889999888888999999999999999998 77889999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=305.04  Aligned_cols=374  Identities=22%  Similarity=0.233  Sum_probs=285.5

Q ss_pred             CEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCC
Q 048289          230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNN  309 (920)
Q Consensus       230 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  309 (920)
                      +.|++++|.+....+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            45666666666666666777777777777777776 56665555566777777777777666677777777777777777


Q ss_pred             CCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchh
Q 048289          310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL  389 (920)
Q Consensus       310 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  389 (920)
                      .|+.+....|..-.++++|+|++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++. .+..
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~  238 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEG  238 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehh
Confidence            777666566666677777777777777655666667777777777777777666677777777777777777775 4555


Q ss_pred             hhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc-hhhhcccccceeccCCCccCCCCCchhhccC
Q 048289          390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVG  468 (920)
Q Consensus       390 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  468 (920)
                      ..|.++++|+.|.+..|.+.... ...+..+.++++|++..|+++.+. .|+..+++|+.|++|.|.|...-++...  .
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--f  315 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--F  315 (873)
T ss_pred             hhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh--h
Confidence            66777777887777777765321 223446778888888888888765 6899999999999999999866555544  5


Q ss_pred             CCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcC
Q 048289          469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL  548 (920)
Q Consensus       469 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  548 (920)
                      +++|++|+|++|+|+.+....+.-|.                  .|++|+|++|.+...-..+|..+++|++|||++|.+
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~------------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLS------------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHH------------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            78888899888888888776655443                  678888899999888888999999999999999999


Q ss_pred             CCcCcc---cccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC------c
Q 048289          549 NGMIPP---CLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN------R  618 (920)
Q Consensus       549 ~~~~p~---~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N------~  618 (920)
                      +..+-+   .+.... |+.|++.+|++..+...+|.+++.|+.|+|.+|.|..+.|.+|..+ .|++|.+..-      +
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            876654   344455 9999999999998888999999999999999999999999999998 8999987654      4


Q ss_pred             ccccCchhhc
Q 048289          619 INGTFPAWLG  628 (920)
Q Consensus       619 l~~~~p~~l~  628 (920)
                      +. .++.|+.
T Consensus       457 l~-Wl~qWl~  465 (873)
T KOG4194|consen  457 LK-WLAQWLY  465 (873)
T ss_pred             HH-HHHHHHH
Confidence            43 4555654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-35  Score=326.21  Aligned_cols=480  Identities=29%  Similarity=0.388  Sum_probs=317.9

Q ss_pred             EEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcC
Q 048289          184 LDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF  263 (920)
Q Consensus       184 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l  263 (920)
                      +|.+.+.+. .+|..+..-..++.|+++.|-.+....+.+...-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            445555555 55555555445666666666322222333334444666666666554 4566666677777777777777


Q ss_pred             CccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccc
Q 048289          264 SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGL  343 (920)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  343 (920)
                      . ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|++. .+|..+..+..++.+..++|......+   
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg---  154 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG---  154 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc---
Confidence            6 45666677777777777777666 56666777777777777777765 456666666667777777662211111   


Q ss_pred             cCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcC
Q 048289          344 FTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYL  423 (920)
Q Consensus       344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  423 (920)
                       .. .++.+++..|.+.+.++..+..+..  .|++.+|.+. ..   .+..+.+|+                        
T Consensus       155 -~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~------------------------  202 (1081)
T KOG0618|consen  155 -QT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLE------------------------  202 (1081)
T ss_pred             -cc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchh------------------------
Confidence             11 1566666666666665555555444  4666666553 11   122222222                        


Q ss_pred             ceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcC
Q 048289          424 SMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL  503 (920)
Q Consensus       424 ~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l  503 (920)
                                              .+....|++....      ...++                     ++.|+.++|.+
T Consensus       203 ------------------------~l~c~rn~ls~l~------~~g~~---------------------l~~L~a~~n~l  231 (1081)
T KOG0618|consen  203 ------------------------VLHCERNQLSELE------ISGPS---------------------LTALYADHNPL  231 (1081)
T ss_pred             ------------------------hhhhhhcccceEE------ecCcc---------------------hheeeeccCcc
Confidence                                    2222222221000      01233                     44444444444


Q ss_pred             CCCCCC-CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccC
Q 048289          504 KGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSK  581 (920)
Q Consensus       504 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~  581 (920)
                      +...+. .+.++++++++.|+++ .+|.+++.+.+|+.++..+|+++ .+|..+.... |+.|.+..|.+. .+|.....
T Consensus       232 ~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~  308 (1081)
T KOG0618|consen  232 TTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEG  308 (1081)
T ss_pred             eeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc
Confidence            422222 2567888888888888 45688999999999999999996 5565555544 999999999998 45666777


Q ss_pred             CCcccEEEccCCccccccCc-cccCCC-CCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCC
Q 048289          582 GSRLTILNLNDNQLEGSVPL-SLVNCS-FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKL  659 (920)
Q Consensus       582 l~~L~~L~L~~N~l~~~~p~-~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  659 (920)
                      .++|++|+|..|++. ..|. .+.... +|+.|..+.|++.......=...+.|+.|++.+|.++...-..+  ..+++|
T Consensus       309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hL  385 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHL  385 (1081)
T ss_pred             cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccce
Confidence            899999999999998 4554 334333 37888888888874332222256778999999999987654433  457899


Q ss_pred             cEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCC
Q 048289          660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGR  739 (920)
Q Consensus       660 ~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~  739 (920)
                      +.|+|++|++. .+|...+.+|                                          ..|++|+||+|+++ .
T Consensus       386 KVLhLsyNrL~-~fpas~~~kl------------------------------------------e~LeeL~LSGNkL~-~  421 (1081)
T KOG0618|consen  386 KVLHLSYNRLN-SFPASKLRKL------------------------------------------EELEELNLSGNKLT-T  421 (1081)
T ss_pred             eeeeecccccc-cCCHHHHhch------------------------------------------HHhHHHhcccchhh-h
Confidence            99999999996 6787766554                                          34688999999998 7


Q ss_pred             chhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccc-cCcccccCCCCCCeeeccCCc
Q 048289          740 IPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG-EIPWQLTSLNFLQVLNLSQNQ  807 (920)
Q Consensus       740 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~ls~N~  807 (920)
                      +|..+.++..|++|...+|++.- .| ++.++++|+.+|+|.|+|+. .+|..... +.|++||+++|.
T Consensus       422 Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  422 LPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            88999999999999999999984 46 88999999999999999984 44555444 889999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-34  Score=317.71  Aligned_cols=450  Identities=30%  Similarity=0.381  Sum_probs=288.3

Q ss_pred             CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCc
Q 048289          180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS  259 (920)
Q Consensus       180 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  259 (920)
                      +|+.||+++|.+. .+|..+..+.+|+.|+++.| .+........++.+|+++.|.+|.+. ..|.++..+++|++|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            3555555555544 45555555555555555555 22211112222223333333332222 344555555555555555


Q ss_pred             CCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccC
Q 048289          260 YNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI  339 (920)
Q Consensus       260 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  339 (920)
                      .|.+. .+|..+..++.++.+..++|.....    ++...                         .+.+++..|.+.+.+
T Consensus       123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-------------------------ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-------------------------IKKLDLRLNVLGGSF  172 (1081)
T ss_pred             hhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-------------------------chhhhhhhhhcccch
Confidence            55554 3444444455555555554411111    11111                         444444445444444


Q ss_pred             CccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCC
Q 048289          340 PSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS  419 (920)
Q Consensus       340 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  419 (920)
                      +..+..+..  .|+|++|.+. .  ..+..+.+|+.+....|.+....     -.-++++.|+.++|.++.   ......
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~---~~~~p~  239 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTT---LDVHPV  239 (1081)
T ss_pred             hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCccee---eccccc
Confidence            444444433  4555555554 1  23445555666666555554111     123566677777776651   222334


Q ss_pred             CCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC--CCCcccceEe
Q 048289          420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL--LPWKNLRYLD  497 (920)
Q Consensus       420 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~  497 (920)
                      ..+|++++++.+++..+|+|+..+.+|+.++..+|+++ .+|..+.  ...+|+.+.+.+|.++.+..  ..++.|++|+
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence            55788999999999999999999999999999999985 6666665  66788899999999888876  4578899999


Q ss_pred             cccCcCCCCCCCC----CCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCccc
Q 048289          498 LRSNSLKGSIPFL----PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFH  572 (920)
Q Consensus       498 L~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~  572 (920)
                      |..|++...++..    ..++..|+.+.|++.......=...+.|+.|.+.+|.++...-+.+.+.. |+.|+|++|++.
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            9999887655432    23477778888877744422233467889999999999877655566655 999999999998


Q ss_pred             ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289          573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT  652 (920)
Q Consensus       573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  652 (920)
                      ......+.++..|+.|+|++|+++ .+|..+.+|..|++|...+|++. ..| .+..++.|+++|++.|+++...-... 
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-  472 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-  472 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh-
Confidence            766678889999999999999998 78899999999999999999998 677 78899999999999999875433322 


Q ss_pred             cCCCCCCcEEEccCCcCcCCCchHHHhhhhcc
Q 048289          653 RFPFPKLRILDLSNNEFTGVLPTRYFQNFQAM  684 (920)
Q Consensus       653 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l  684 (920)
                       .+.|+|++||+++|.-. ......+..++.+
T Consensus       473 -~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l  502 (1081)
T KOG0618|consen  473 -LPSPNLKYLDLSGNTRL-VFDHKTLKVLKSL  502 (1081)
T ss_pred             -CCCcccceeeccCCccc-ccchhhhHHhhhh
Confidence             23379999999999742 2333444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=6.7e-31  Score=277.82  Aligned_cols=365  Identities=25%  Similarity=0.342  Sum_probs=207.0

Q ss_pred             CCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCC
Q 048289           77 LPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNE  156 (920)
Q Consensus        77 l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~  156 (920)
                      ++..|-.|+++|.|++...|.....++.++.|.|....+. .+|+.++.|.+|++|.+++|++.+     +...+..++.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~   79 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPR   79 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchh
Confidence            4455556666666665556767777777777777777776 677777777777777777776532     3334555666


Q ss_pred             CCEEEcCCCCCC-CCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcC-CCCcCCCCCCCEEEc
Q 048289          157 LQELVLNSVDMS-YEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSV-FPKVNWSSPLRFMDL  234 (920)
Q Consensus       157 L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L  234 (920)
                      |+.+.+..|++. .-+|..+-++..|+.||||+|++. ..|..+..-+++-+|+|++|+ +... -+-+.+++.|-.|||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc
Confidence            666666666553 235666677777777777777776 677777766777777777763 3222 124555555566666


Q ss_pred             cCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCc-ccchhhhhcCCCCCEEECcCCCCCC
Q 048289          235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT-GQIPCIFANLTQLSFLDFSNNQLNG  313 (920)
Q Consensus       235 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~  313 (920)
                      ++|++. .+|..+..+.+|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. 
T Consensus       158 S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  158 SNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             ccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence            665554 33444555555666666665554322233334455555555554433 234555555555555555555554 


Q ss_pred             cccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhh
Q 048289          314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFA  393 (920)
Q Consensus       314 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  393 (920)
                      ..|+.+-.+++|+.|+|++|+++ .+........+|++|+++.|+++ ..|+++..+++|+.|.+.+|+++-+..+..++
T Consensus       236 ~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            44555555555555555555554 33333333445555555555555 45555555555555555555554333344445


Q ss_pred             hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCc
Q 048289          394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQ  455 (920)
Q Consensus       394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~  455 (920)
                      .+.+|+.+..++|.++..  ......|+.|+.|.++.|.+..+|+.+.-++.|+.||+..|.
T Consensus       314 KL~~Levf~aanN~LElV--PEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  314 KLIQLEVFHAANNKLELV--PEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhhHHHHhhccccccC--chhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence            555555555555554322  222334555555555555555555555555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=3.4e-30  Score=272.56  Aligned_cols=362  Identities=27%  Similarity=0.403  Sum_probs=259.1

Q ss_pred             CCCCCEEEccCCcCc-ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEE
Q 048289          226 SSPLRFMDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFL  304 (920)
Q Consensus       226 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  304 (920)
                      ++-.+-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            444566677777777 467778888888888888888777 57888888888888888888877 445567778888888


Q ss_pred             ECcCCCCCC-cccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcC
Q 048289          305 DFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL  383 (920)
Q Consensus       305 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  383 (920)
                      .+..|++.. -+|..+-.+..|+.|||++|++. ..|..+....++-.|+|++|+|..+....|.++..|-.|||++|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            888887753 35667777888888888888887 7788888888888888888888865555667888888888888887


Q ss_pred             CCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCC--cCCchhhhcccccceeccCCCccCCCCC
Q 048289          384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI--SEFPDFLRTQHRLQILDLSDNQIRGGIP  461 (920)
Q Consensus       384 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~~~  461 (920)
                      . ..++ ....+..|++|+|++|++..... .....+.+|+.|.+++.+-  ..+|..+..+.+|..+|+|.|.+. .+|
T Consensus       163 e-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  163 E-MLPP-QIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             h-hcCH-HHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            5 3332 34667788888888887653321 1223455677777777754  378888888888888888888886 677


Q ss_pred             chhhccCCCCCcEEECCCCcCcCccC--CCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcC
Q 048289          462 NWIWNVGKDTLNHLNLSHNFLTGIEL--LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF  539 (920)
Q Consensus       462 ~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  539 (920)
                      +.++  .+++|+.|+||+|.|+.+..  ..+.+|+                     +|++|.|+++ .+|.+++.++.|+
T Consensus       239 ecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lE---------------------tLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  239 ECLY--KLRNLRRLNLSGNKITELNMTEGEWENLE---------------------TLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             HHHh--hhhhhheeccCcCceeeeeccHHHHhhhh---------------------hhccccchhc-cchHHHhhhHHHH
Confidence            7777  67777788887777776543  2344444                     4444555554 6778888888888


Q ss_pred             eEeCCCCcCC-CcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289          540 YVNLSNNSLN-GMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN  617 (920)
Q Consensus       540 ~L~Ls~n~l~-~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (920)
                      .|.+.+|+++ .-+|+.++... |+.+..++|.+. .+|..++.|..|+.|.|+.|++- .+|+++.-++.|++||+..|
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence            8888888776 22566666555 666666666664 56666667777777777777665 56666666667777777666


Q ss_pred             ccc
Q 048289          618 RIN  620 (920)
Q Consensus       618 ~l~  620 (920)
                      .--
T Consensus       373 pnL  375 (1255)
T KOG0444|consen  373 PNL  375 (1255)
T ss_pred             cCc
Confidence            543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=4e-25  Score=223.56  Aligned_cols=131  Identities=22%  Similarity=0.270  Sum_probs=77.2

Q ss_pred             CCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccC-ccccccCCccccCCCCCCEEEc
Q 048289          276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY-NSLNGTIPSGLFTSPLLESIDL  354 (920)
Q Consensus       276 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L  354 (920)
                      .-..++|..|+|+...+.+|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+ |+|+..-...|..+.+++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345566666666666666666666666666666666666666666666666555555 5665333334445566666666


Q ss_pred             cCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCc
Q 048289          355 RNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS  407 (920)
Q Consensus       355 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  407 (920)
                      ..|++.....+.|..++++..|.+.+|.+. .+....|..+..++.+.+..|.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence            666666555566666666666666666554 3334444455555555554443

>PLN03210 Resistant to P

Probab=99.88  E-value=2.7e-21  Score=242.33  Aligned_cols=367  Identities=23%  Similarity=0.294  Sum_probs=189.0

Q ss_pred             CCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCC-----CCCCCcCCCCC-CCCEEeCCCCCCcccCCcccc
Q 048289           51 TGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNY-----SYISPGFTRFP-NLAHLNLSVSSFSGQIPAEIS  124 (920)
Q Consensus        51 ~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-----~~i~~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~  124 (920)
                      +.+|+.+.+.-..+...-....+|.++++|+.|.+..+....     ..+|..+..++ +|+.|++.++.+. .+|..+ 
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence            356777766544433211112267888899998886553211     12566666664 5888888888776 677666 


Q ss_pred             CCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 048289          125 HLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPN  204 (920)
Q Consensus       125 ~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  204 (920)
                      ...+|++|++++|++..+     +..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..+..+++
T Consensus       609 ~~~~L~~L~L~~s~l~~L-----~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~  682 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKL-----WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK  682 (1153)
T ss_pred             CccCCcEEECcCcccccc-----ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC
Confidence            467888888888765432     23345566677777766654444443 556666666666666544556666666666


Q ss_pred             CCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccC
Q 048289          205 LQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSN  284 (920)
Q Consensus       205 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  284 (920)
                      |+.|++++|..+ ..+|...++++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|++|.+.+
T Consensus       683 L~~L~L~~c~~L-~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        683 LEDLDMSRCENL-EILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE  756 (1153)
T ss_pred             CCEEeCCCCCCc-CccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence            666666665322 22332224455555555555433333321   234444444444443 233222 233444443333


Q ss_pred             CcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCch
Q 048289          285 NKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSIS  364 (920)
Q Consensus       285 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  364 (920)
                      +.... +..                .+....+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|
T Consensus       757 ~~~~~-l~~----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        757 MKSEK-LWE----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             cchhh-ccc----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            22110 000                0000001111122344444444444333444444444444444444443222333


Q ss_pred             hhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhccc
Q 048289          365 NSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH  444 (920)
Q Consensus       365 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~  444 (920)
                      ..+                          .+++|+.|++++|..-.    ......++|+.|++++|.++.+|.++..++
T Consensus       820 ~~~--------------------------~L~sL~~L~Ls~c~~L~----~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~  869 (1153)
T PLN03210        820 TGI--------------------------NLESLESLDLSGCSRLR----TFPDISTNISDLNLSRTGIEEVPWWIEKFS  869 (1153)
T ss_pred             CCC--------------------------CccccCEEECCCCCccc----cccccccccCEeECCCCCCccChHHHhcCC
Confidence            222                          33444444444442110    001123567788888888888888888888


Q ss_pred             ccceeccCCCccCCCCCchhhccCCCCCcEEECCCC
Q 048289          445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN  480 (920)
Q Consensus       445 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n  480 (920)
                      +|+.|++++|.-...+|..+.  .++.|+.+++++|
T Consensus       870 ~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C  903 (1153)
T PLN03210        870 NLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDC  903 (1153)
T ss_pred             CCCEEECCCCCCcCccCcccc--cccCCCeeecCCC
Confidence            888888888654444554433  4445555555444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=1e-20  Score=237.20  Aligned_cols=346  Identities=23%  Similarity=0.256  Sum_probs=215.0

Q ss_pred             ccccCCCCCCEEeCcCCc------CCccCcccccCCC-CCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccc
Q 048289          245 ASLGNLSQLTYLDLSYNN------FSGHIPSTLSNLQ-QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISS  317 (920)
Q Consensus       245 ~~l~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  317 (920)
                      .+|..+++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..| ...+|+.|++.+|++. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            456666777777665432      2223455555543 4777777777665 455555 4567777777777765 3455


Q ss_pred             cccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCC
Q 048289          318 SVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN  397 (920)
Q Consensus       318 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  397 (920)
                      .+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....++...  ++++
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~s  705 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKS  705 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCC
Confidence            566677777777776654445553 6667777777777776656677777777777777777765433333221  4555


Q ss_pred             CceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEEC
Q 048289          398 LLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNL  477 (920)
Q Consensus       398 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~L  477 (920)
                      |+.|++++|.....  .+  ...++|+.|++++|.+..+|..+ .+++|+.|++.++...                    
T Consensus       706 L~~L~Lsgc~~L~~--~p--~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~--------------------  760 (1153)
T PLN03210        706 LYRLNLSGCSRLKS--FP--DISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE--------------------  760 (1153)
T ss_pred             CCEEeCCCCCCccc--cc--cccCCcCeeecCCCccccccccc-cccccccccccccchh--------------------
Confidence            66666655532100  00  11234555555555555554432 2344444444332211                    


Q ss_pred             CCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCccccc
Q 048289          478 SHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA  557 (920)
Q Consensus       478 s~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  557 (920)
                            .+..    .+       ..+.......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|....
T Consensus       761 ------~l~~----~~-------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~  823 (1153)
T PLN03210        761 ------KLWE----RV-------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN  823 (1153)
T ss_pred             ------hccc----cc-------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCC
Confidence                  0000    00       000001112246788888888877778888899999999999998876667777664


Q ss_pred             ccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEE
Q 048289          558 NSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLI  637 (920)
Q Consensus       558 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  637 (920)
                      ..+|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.++
T Consensus       824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            334888888887765555543   357888889988887 6788888888899999888654446777778888888888


Q ss_pred             ccCce
Q 048289          638 LRSNR  642 (920)
Q Consensus       638 L~~N~  642 (920)
                      +++|.
T Consensus       900 l~~C~  904 (1153)
T PLN03210        900 FSDCG  904 (1153)
T ss_pred             cCCCc
Confidence            88874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.7e-21  Score=223.81  Aligned_cols=261  Identities=28%  Similarity=0.359  Sum_probs=145.6

Q ss_pred             cceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceec
Q 048289          446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLS  525 (920)
Q Consensus       446 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~  525 (920)
                      -..|+++++.++ .+|..+.    ++|+.|++.+|+++.++                      ..+++|++|++++|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP----------------------~lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLP----------------------ALPPELRTLEVSGNQLT  255 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCC----------------------CCCCCCcEEEecCCccC
Confidence            455666666665 4555443    24555555555555543                      23344555555555544


Q ss_pred             ccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccC
Q 048289          526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVN  605 (920)
Q Consensus       526 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  605 (920)
                      . +|..   .++|+.|++++|.+++ +|...  ..|+.|++++|+++. +|..   .++|+.|++++|++++ +|...  
T Consensus       256 s-LP~l---p~sL~~L~Ls~N~L~~-Lp~lp--~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp--  321 (788)
T PRK15387        256 S-LPVL---PPGLLELSIFSNPLTH-LPALP--SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP--  321 (788)
T ss_pred             c-ccCc---ccccceeeccCCchhh-hhhch--hhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCCc--
Confidence            2 2221   2345555555555542 22211  125555555555553 2221   2456666666666653 33211  


Q ss_pred             CCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccc
Q 048289          606 CSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMM  685 (920)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~  685 (920)
                       .+|+.|++++|++++ +|..   ..+|++|+|++|++++ +|..     .++|+.|++++|++++ +|..         
T Consensus       322 -~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l---------  380 (788)
T PRK15387        322 -SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL---------  380 (788)
T ss_pred             -ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc---------
Confidence             245556666666653 3321   1356666666666654 2221     2456667777776663 4421         


Q ss_pred             cCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcC
Q 048289          686 HGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP  765 (920)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  765 (920)
                                                           +..|+.|++++|.|++ +|..   .++|+.|++++|+|++ +|
T Consensus       381 -------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP  418 (788)
T PRK15387        381 -------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LP  418 (788)
T ss_pred             -------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CC
Confidence                                                 1235677777777774 4543   2567778888888775 56


Q ss_pred             cccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCC
Q 048289          766 YSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ  814 (920)
Q Consensus       766 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  814 (920)
                      ...   .+|+.|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|.
T Consensus       419 ~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        419 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            432   45677888888877 5777777888888888888888877665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=6.4e-21  Score=220.80  Aligned_cols=192  Identities=30%  Similarity=0.393  Sum_probs=93.2

Q ss_pred             ceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcC
Q 048289          424 SMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL  503 (920)
Q Consensus       424 ~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l  503 (920)
                      ..|+++++.++.+|+.+.  ++|+.|++++|+++. +|.     ..++|++|++++|+++.++. ..++|+.|++++|.+
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~LtsLP~-lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPL  274 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCcccC-cccccceeeccCCch
Confidence            345555555555565443  256666666666653 332     23556666666666665532 234555666666655


Q ss_pred             CCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCC
Q 048289          504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGS  583 (920)
Q Consensus       504 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  583 (920)
                      .. +|..+.+|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..  ...|+.|++++|.+++ +|..   ..
T Consensus       275 ~~-Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l---p~  342 (788)
T PRK15387        275 TH-LPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL---PS  342 (788)
T ss_pred             hh-hhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-cccc---cc
Confidence            43 22234555666666665553 232   12456666666666653 2221  1125555555555543 2221   12


Q ss_pred             cccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceee
Q 048289          584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH  644 (920)
Q Consensus       584 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  644 (920)
                      +|+.|+|++|++++ +|..   ..+|+.|++++|+++. +|..   .++|+.|++++|+++
T Consensus       343 ~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        343 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT  395 (788)
T ss_pred             ccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence            45555555555552 3321   1344555555555552 3322   123444444444444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-21  Score=198.96  Aligned_cols=298  Identities=21%  Similarity=0.207  Sum_probs=225.2

Q ss_pred             eEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-ccee-ecCCCccc
Q 048289          495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFL-DMRMNNFH  572 (920)
Q Consensus       495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L-~L~~n~l~  572 (920)
                      .++.++-.++.++...|+...+++|..|+|+...+.+|..+++|+.|||++|.|+.+-|+.|.+.. +..| +.++|+|+
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            456666677777777899999999999999999999999999999999999999999999999887 5444 55559999


Q ss_pred             ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289          573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT  652 (920)
Q Consensus       573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  652 (920)
                      ......|.++.+|+.|.+.-|++.-+..++|..+++|..|.+..|.+....-..|..+.+++.+++..|.+...      
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd------  203 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD------  203 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc------
Confidence            88889999999999999999999988899999999999999999999855555899999999999999986532      


Q ss_pred             cCCCCCCcEEE----ccCCcCcCCCchHHHhh-hhccccCCCCCCCCCcceecc---Ccceee-EEEEEccchhhhhhhc
Q 048289          653 RFPFPKLRILD----LSNNEFTGVLPTRYFQN-FQAMMHGNNNSAEGGNMYINY---GNEYYS-AILTVKGVNMEMEKVL  723 (920)
Q Consensus       653 ~~~l~~L~~L~----Ls~N~l~~~~p~~~~~~-l~~l~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~  723 (920)
                       ++++.+....    +.--.+...+|...-.. ..+..         ...|..+   ....+. ............++.+
T Consensus       204 -CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~---------a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  204 -CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED---------ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             -cccchhhhHHhhchhhcccceecchHHHHHHHhcccc---------hhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence             2333322111    11111122233221100 00000         0000000   000000 0000001122235568


Q ss_pred             ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL  803 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  803 (920)
                      +.|+.|+|++|++++.-+..|..+.++++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|+.+.+|.+|++
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            89999999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             cCCcc
Q 048289          804 SQNQL  808 (920)
Q Consensus       804 s~N~l  808 (920)
                      -.|++
T Consensus       354 ~~Np~  358 (498)
T KOG4237|consen  354 LSNPF  358 (498)
T ss_pred             ccCcc
Confidence            98876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.7e-19  Score=210.65  Aligned_cols=206  Identities=27%  Similarity=0.447  Sum_probs=104.5

Q ss_pred             cCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccC
Q 048289          422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSN  501 (920)
Q Consensus       422 ~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n  501 (920)
                      +...|++++++++.+|..+.  +.++.|++++|+++ .+|..+.    .+|++|++++|.++.++..             
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~-------------  238 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPAT-------------  238 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChh-------------
Confidence            45566777766666665442  35666666666665 3343321    3455555555555444332             


Q ss_pred             cCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccC
Q 048289          502 SLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSK  581 (920)
Q Consensus       502 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~  581 (920)
                              .+++|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+. ..|+.|++++|++++ +|..+. 
T Consensus       239 --------l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-  303 (754)
T PRK15370        239 --------LPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-  303 (754)
T ss_pred             --------hhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-
Confidence                    2334455555555544 3343332  34555555555555 2343332 125555555555553 232221 


Q ss_pred             CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289          582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI  661 (920)
Q Consensus       582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  661 (920)
                       ++|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++. +|..+    .++|+.
T Consensus       304 -~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l----p~~L~~  371 (754)
T PRK15370        304 -SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL----PPTITT  371 (754)
T ss_pred             -hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh----cCCcCE
Confidence             345666666666653 343322  456666666666653 444332  456666666666552 33322    245666


Q ss_pred             EEccCCcCcCCCch
Q 048289          662 LDLSNNEFTGVLPT  675 (920)
Q Consensus       662 L~Ls~N~l~~~~p~  675 (920)
                      |++++|+++ .+|.
T Consensus       372 LdLs~N~Lt-~LP~  384 (754)
T PRK15370        372 LDVSRNALT-NLPE  384 (754)
T ss_pred             EECCCCcCC-CCCH
Confidence            777777666 3443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.3e-19  Score=211.84  Aligned_cols=78  Identities=23%  Similarity=0.343  Sum_probs=40.3

Q ss_pred             cccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccc----cCCCCCCe
Q 048289          725 IFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQL----TSLNFLQV  800 (920)
Q Consensus       725 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l----~~l~~L~~  800 (920)
                      .|+.|++++|+|+ .+|..+.  +.|+.|+|++|+|+. +|..+.  .+|+.|++++|+|+ .+|..+    ..++.+..
T Consensus       347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~  419 (754)
T PRK15370        347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR  419 (754)
T ss_pred             cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence            3455666666655 3444442  456666666666653 344333  24566666666655 333322    23355566


Q ss_pred             eeccCCccc
Q 048289          801 LNLSQNQLV  809 (920)
Q Consensus       801 L~ls~N~l~  809 (920)
                      +++.+|+++
T Consensus       420 L~L~~Npls  428 (754)
T PRK15370        420 IIVEYNPFS  428 (754)
T ss_pred             EEeeCCCcc
Confidence            666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=6.4e-18  Score=184.55  Aligned_cols=91  Identities=18%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             EEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCccc----CCccccCCCCCCEEEcCCCCCCC--CCCchHHHHHhcCC
Q 048289           82 ILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLSGNSQLG--LDTPVLKALVQNLN  155 (920)
Q Consensus        82 ~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~--~~~~~l~~~~~~l~  155 (920)
                      .|+|..+.+++......+..++.|++|+++++.+++.    ++..+...+.|++|+++++.+..  .....+...+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3566666666444444455666677777777766432    34444555666666666664431  11122233344444


Q ss_pred             CCCEEEcCCCCCCCCcc
Q 048289          156 ELQELVLNSVDMSYEVP  172 (920)
Q Consensus       156 ~L~~L~L~~~~~~~~~~  172 (920)
                      +|++|++++|.+....+
T Consensus        82 ~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          82 GLQELDLSDNALGPDGC   98 (319)
T ss_pred             ceeEEEccCCCCChhHH
Confidence            55555555554443333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=8.5e-18  Score=183.57  Aligned_cols=133  Identities=28%  Similarity=0.301  Sum_probs=66.5

Q ss_pred             EECCCCCCcc-cCCCCCCccCCCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCCCCcc------cCCccccCC
Q 048289           57 LDLSCSRLHG-SIPSDSSLFSLPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVSSFSG------QIPAEISHL  126 (920)
Q Consensus        57 L~L~~~~l~~-~~~~~~~l~~l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~------~~p~~l~~l  126 (920)
                      |+|.++.+.+ ....  .+..++.|++|+++++.++..   .++..+...+.|++|+++++.+.+      .++..+.++
T Consensus         3 l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4555555542 2222  344556677777777666432   134445566667777776666541      223445556


Q ss_pred             CCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCC----cchhccCC-CCCCEEEccCCcCC
Q 048289          127 SKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYE----VPSFLTNL-SSLTSLDLGNCGLQ  192 (920)
Q Consensus       127 ~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l-~~L~~L~Ls~n~l~  192 (920)
                      ++|++|++++|.+.......+...... ++|++|++++|.+++.    +...+..+ ++|+.|++++|.++
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            677777777665543222222222222 3466666666655421    12223333 44455555554444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=7.3e-17  Score=145.21  Aligned_cols=180  Identities=32%  Similarity=0.563  Sum_probs=113.0

Q ss_pred             CcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEE
Q 048289          583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRIL  662 (920)
Q Consensus       583 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  662 (920)
                      ..++.|.|++|+++ .+|..++.+.+|++|++++|+|. .+|..++.++.|+.|+++-|++. ..|..+  ..+|.|+.|
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~levl  107 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALEVL  107 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--CCCchhhhh
Confidence            33444444444444 33334444444444444444444 34444444444444444444443 122222  345555555


Q ss_pred             EccCCcCcC-CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch
Q 048289          663 DLSNNEFTG-VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP  741 (920)
Q Consensus       663 ~Ls~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip  741 (920)
                      |+++|++.. .+|..+|.                                           +..|+.|+|+.|.+. .+|
T Consensus       108 dltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe-~lp  143 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE-ILP  143 (264)
T ss_pred             hccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-cCC
Confidence            555555543 34433321                                           355678899999998 789


Q ss_pred             hhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCC---CCCeeeccCCcccCCCC
Q 048289          742 EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLN---FLQVLNLSQNQLVGPIP  813 (920)
Q Consensus       742 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~---~L~~L~ls~N~l~g~iP  813 (920)
                      +.+|++++|+.|.+..|.+- ..|.+++.|+.|++|.+.+|+++ .+|..++++.   +=+++.+.+|+..-+|-
T Consensus       144 ~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  144 PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            99999999999999999987 56999999999999999999999 5566666653   33456677777665554

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=8.7e-15  Score=171.27  Aligned_cols=118  Identities=37%  Similarity=0.600  Sum_probs=105.7

Q ss_pred             cccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeecc
Q 048289          725 IFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLS  804 (920)
Q Consensus       725 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls  804 (920)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCC--CCCCCcccccCCcCCCCCCCCCCCC
Q 048289          805 QNQLVGPIPQGKQ--FHTFSSDSYNGNMGLCGFPLSEKCS  842 (920)
Q Consensus       805 ~N~l~g~iP~~~~--~~~~~~~~~~~n~~lcg~~~~~~c~  842 (920)
                      +|+++|.+|....  +.......+.+|+++||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  1223345678999999987655674

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=7.4e-17  Score=145.17  Aligned_cols=151  Identities=26%  Similarity=0.404  Sum_probs=95.4

Q ss_pred             CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCE
Q 048289           52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS  131 (920)
Q Consensus        52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  131 (920)
                      .+++.|.||+|.+. .+|+  .++.+.+|++|++++|+++.  +|..+++++.|+.|++.-|++. .+|..|+.++.|++
T Consensus        33 s~ITrLtLSHNKl~-~vpp--nia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhcccCcee-ecCC--cHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            57788888888876 4555  68888888888888888876  7888888888888888888877 78888888888888


Q ss_pred             EEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 048289          132 LDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILS  211 (920)
Q Consensus       132 L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  211 (920)
                      ||+++|.+..   ..++..+..++.|+.|+++.|++. .+|..++++++|+.|.+..|.+- .+|..++.+++|++|++.
T Consensus       107 ldltynnl~e---~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  107 LDLTYNNLNE---NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhcccccccc---ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            8888875432   333333334444444444444443 33444444444444444444443 344444444444444444


Q ss_pred             CC
Q 048289          212 YN  213 (920)
Q Consensus       212 ~n  213 (920)
                      +|
T Consensus       182 gn  183 (264)
T KOG0617|consen  182 GN  183 (264)
T ss_pred             cc
Confidence            44

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=3.4e-12  Score=149.60  Aligned_cols=104  Identities=36%  Similarity=0.674  Sum_probs=78.7

Q ss_pred             CCCCCCCCCc----cccceEecC--CC--CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCC
Q 048289           31 ISWKEEKDCC----SWDGVTCDM--MT--GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRF  102 (920)
Q Consensus        31 ~~w~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l  102 (920)
                      .+|. ++.||    .|.||.|..  ..  .+|+.|+|+++.+.|.+|.  .+..+++|++|+|++|.+.+. +|..++.+
T Consensus       390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l  465 (623)
T PLN03150        390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSI  465 (623)
T ss_pred             CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCC
Confidence            4785 34443    799999952  22  2589999999999888887  778888888888888877765 77777778


Q ss_pred             CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCC
Q 048289          103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNS  138 (920)
Q Consensus       103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~  138 (920)
                      ++|++|+|++|.+++.+|..++++++|++|+|++|.
T Consensus       466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            888888888887777777777777777777777764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=2.1e-12  Score=130.51  Aligned_cols=239  Identities=24%  Similarity=0.303  Sum_probs=130.4

Q ss_pred             CCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCC---CCcccCCc-------cccCCCCCCEEEcCCCCCCCCC
Q 048289           77 LPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVS---SFSGQIPA-------EISHLSKLVSLDLSGNSQLGLD  143 (920)
Q Consensus        77 l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n---~~~~~~p~-------~l~~l~~L~~L~Ls~n~~~~~~  143 (920)
                      +..++.++||+|.|...   .+...+.+.+.|+..++|+-   +....+|.       ++-.+++|++||||.|.+-.-.
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            34444444444444321   12233455556666666642   22223443       3456678899999988776666


Q ss_pred             CchHHHHHhcCCCCCEEEcCCCCCCCCcchh-------------ccCCCCCCEEEccCCcCCCC----CCcccCCCCCCC
Q 048289          144 TPVLKALVQNLNELQELVLNSVDMSYEVPSF-------------LTNLSSLTSLDLGNCGLQGS----IPENIFRLPNLQ  206 (920)
Q Consensus       144 ~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-------------l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~  206 (920)
                      ...+...+.++..|++|+|.+|.+...--..             ...-+.|+++...+|++...    +...+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            6777888888999999999999876432222             22335666666666665432    112334455555


Q ss_pred             EEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCcc----CcccccCCCCCCEEEc
Q 048289          207 NLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGH----IPSTLSNLQQLRHLDL  282 (920)
Q Consensus       207 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L  282 (920)
                      .+.+..|......+.                    .+..++..+++|+.|||.+|.++..    +...+..+++|+.|++
T Consensus       189 evr~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             eEEEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            555555522211110                    1223455566666666666655421    2234455566666666


Q ss_pred             cCCcCcccchhhh-----hcCCCCCEEECcCCCCCCc----ccccccCCCcCceeeccCccc
Q 048289          283 SNNKFTGQIPCIF-----ANLTQLSFLDFSNNQLNGP----ISSSVSRLHSLVTIYLSYNSL  335 (920)
Q Consensus       283 ~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  335 (920)
                      ++|.+...-...|     ...++|+.+.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6666653222221     1346666677766666532    122334466677777777776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=1.1e-11  Score=132.49  Aligned_cols=191  Identities=29%  Similarity=0.480  Sum_probs=115.9

Q ss_pred             cCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC
Q 048289          538 IFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN  616 (920)
Q Consensus       538 L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  616 (920)
                      -...|++.|++. .+|..++.+. |+.+.+.+|.+. .+|.++.++..|+.|+|+.|+++ ..|..+..|+ |+.|.+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            334555666554 4444444443 555555555554 44555555555666666666655 4555555444 55555555


Q ss_pred             CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289          617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN  696 (920)
Q Consensus       617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  696 (920)
                      |+++ .+|+.++.                          .+.|..||.+.|++. .+|.+. ++                
T Consensus       153 Nkl~-~lp~~ig~--------------------------~~tl~~ld~s~nei~-slpsql-~~----------------  187 (722)
T KOG0532|consen  153 NKLT-SLPEEIGL--------------------------LPTLAHLDVSKNEIQ-SLPSQL-GY----------------  187 (722)
T ss_pred             Cccc-cCCccccc--------------------------chhHHHhhhhhhhhh-hchHHh-hh----------------
Confidence            5555 44444443                          344555555555554 234332 22                


Q ss_pred             ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcc
Q 048289          697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES  776 (920)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~  776 (920)
                                                +..|+.|.+..|++. .+|+++..| .|..||+|+|+++ .||-.|.+|+.|++
T Consensus       188 --------------------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  188 --------------------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQV  238 (722)
T ss_pred             --------------------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhhee
Confidence                                      234566677777777 567777754 5788999999998 67999999999999


Q ss_pred             ccCCCCcccccCcccc---cCCCCCCeeeccCCc
Q 048289          777 LDLSSNKVAGEIPWQL---TSLNFLQVLNLSQNQ  807 (920)
Q Consensus       777 L~Ls~N~l~g~ip~~l---~~l~~L~~L~ls~N~  807 (920)
                      |-|.+|.|... |..+   +...-.++|+..-++
T Consensus       239 l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  239 LQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence            99999999843 4332   455667777777775

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3.5e-10  Score=127.12  Aligned_cols=199  Identities=33%  Similarity=0.475  Sum_probs=135.8

Q ss_pred             eeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCC-CCcEEECCCCcccccCchhhcCCCCCCEEEccCc
Q 048289          563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCS-FLEVLDVGNNRINGTFPAWLGALSELQVLILRSN  641 (920)
Q Consensus       563 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  641 (920)
                      .+++..|.+...+ ......+.++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3455555543222 12223356777777777777 4454555553 7777777777777 45556677777777777777


Q ss_pred             eeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhh
Q 048289          642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEK  721 (920)
Q Consensus       642 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (920)
                      ++....+..   ...+.|+.|++++|++.. +|...                                           .
T Consensus       174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~~-l~~~~-------------------------------------------~  206 (394)
T COG4886         174 DLSDLPKLL---SNLSNLNNLDLSGNKISD-LPPEI-------------------------------------------E  206 (394)
T ss_pred             hhhhhhhhh---hhhhhhhheeccCCcccc-Cchhh-------------------------------------------h
Confidence            776543321   145678888888888873 34221                                           0


Q ss_pred             hcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCee
Q 048289          722 VLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVL  801 (920)
Q Consensus       722 ~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  801 (920)
                      .+..|+++++++|.+. .++..++++..+..|.+++|++... +..++.+++++.|++++|.++...+  ++.+..++.|
T Consensus       207 ~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L  282 (394)
T COG4886         207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL  282 (394)
T ss_pred             hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEE
Confidence            1234678888888644 5666788888888888888888753 6778888889999999999885544  8888999999


Q ss_pred             eccCCcccCCCCCC
Q 048289          802 NLSQNQLVGPIPQG  815 (920)
Q Consensus       802 ~ls~N~l~g~iP~~  815 (920)
                      ++++|.++...|..
T Consensus       283 ~~s~n~~~~~~~~~  296 (394)
T COG4886         283 DLSGNSLSNALPLI  296 (394)
T ss_pred             eccCccccccchhh
Confidence            99999988777754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=6.2e-11  Score=123.26  Aligned_cols=86  Identities=31%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             CCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCC-----CCCCCcCceEeeeccCCcCCc--hhhhcc
Q 048289          371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV-----NSSFPYLSMLSLSSCNISEFP--DFLRTQ  443 (920)
Q Consensus       371 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~~~L~~L~l~~~~l~~lp--~~l~~~  443 (920)
                      ..|+.|+|++|++...........++.|+.|+++.+.++.....+.     ...+++|++|++..|++.+.+  ..+..+
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l  325 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL  325 (505)
T ss_pred             hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence            3445555555544433333344445555555555554444333332     223455555555555554433  223334


Q ss_pred             cccceeccCCCcc
Q 048289          444 HRLQILDLSDNQI  456 (920)
Q Consensus       444 ~~L~~L~Ls~n~l  456 (920)
                      ++|+.|.+..|.+
T Consensus       326 ~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  326 ENLKHLRITLNYL  338 (505)
T ss_pred             chhhhhhcccccc
Confidence            4444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=6e-11  Score=127.08  Aligned_cols=194  Identities=28%  Similarity=0.375  Sum_probs=132.7

Q ss_pred             CceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCc
Q 048289          423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS  502 (920)
Q Consensus       423 L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~  502 (920)
                      -...+++.|++.++|..+..+..|+.+.+..|.+. .+|..+.  .+                                 
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~--~L---------------------------------  120 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAIC--NL---------------------------------  120 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhh--hh---------------------------------
Confidence            34456666666666666666666666666666554 3333332  11                                 


Q ss_pred             CCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccC
Q 048289          503 LKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSK  581 (920)
Q Consensus       503 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~  581 (920)
                               ..|++++++.|+++ ..|..++.++ |+.|.+++|+++ .+|..+.... |..||.+.|.+. .+|..+..
T Consensus       121 ---------~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~  187 (722)
T KOG0532|consen  121 ---------EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY  187 (722)
T ss_pred             ---------hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh
Confidence                     24455555666655 5666677664 888889999887 5666666544 888899989887 56677788


Q ss_pred             CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289          582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI  661 (920)
Q Consensus       582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  661 (920)
                      +.+|+.|.+..|++. .+|..+.. -.|..||+++|+++ .+|..|.++..|++|-|.+|.+..+...-......-=.++
T Consensus       188 l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy  264 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY  264 (722)
T ss_pred             HHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence            888999999999887 56777774 45888999999998 7888899999999999999988754222111122223467


Q ss_pred             EEccCCc
Q 048289          662 LDLSNNE  668 (920)
Q Consensus       662 L~Ls~N~  668 (920)
                      |+...++
T Consensus       265 L~~qA~q  271 (722)
T KOG0532|consen  265 LSTQACQ  271 (722)
T ss_pred             ecchhcc
Confidence            7777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=7.7e-10  Score=124.37  Aligned_cols=197  Identities=35%  Similarity=0.481  Sum_probs=122.9

Q ss_pred             EEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCC-CCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEE
Q 048289           82 ILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLS-KLVSLDLSGNSQLGLDTPVLKALVQNLNELQEL  160 (920)
Q Consensus        82 ~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L  160 (920)
                      .++++.+.+...  ...+..++.++.|++.++.++ .+|.....+. +|+.|++++|.+..+     +..+..+++|+.|
T Consensus        97 ~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-----~~~~~~l~~L~~L  168 (394)
T COG4886          97 SLDLNLNRLRSN--ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-----PSPLRNLPNLKNL  168 (394)
T ss_pred             eeeccccccccC--chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-----hhhhhcccccccc
Confidence            577777766332  233556678899999998888 6676677774 899999998876543     2456777888888


Q ss_pred             EcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCc
Q 048289          161 VLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFM  240 (920)
Q Consensus       161 ~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~  240 (920)
                      ++++|+++.. +......+.|+.|++++|++. .+|........|++|.+++| .....+..+..+.++..+.+.+|++.
T Consensus       169 ~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         169 DLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             ccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC-cceecchhhhhcccccccccCCceee
Confidence            8888877633 433446778888888888877 56665555666777777777 23333334455555555555555443


Q ss_pred             ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccch
Q 048289          241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP  292 (920)
Q Consensus       241 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  292 (920)
                      .. +..++.++++++|++++|.++.. +. ++.+.+++.|+++++.+....+
T Consensus       246 ~~-~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         246 DL-PESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ec-cchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence            21 34455555555555555555532 22 5555555555555555554333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.2e-10  Score=121.07  Aligned_cols=211  Identities=23%  Similarity=0.245  Sum_probs=107.5

Q ss_pred             CCCCCCEEeCCCCCCcccCC--ccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhc-cC
Q 048289          101 RFPNLAHLNLSVSSFSGQIP--AEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFL-TN  177 (920)
Q Consensus       101 ~l~~L~~L~Ls~n~~~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l-~~  177 (920)
                      ++..|+...|.++.+. ..+  .....|++++.||||+|-+...  ..+......+++|+.|+++.|.+........ ..
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhH--HHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            4455555555555443 222  2334455555555555532211  2233444455555555555554432221111 13


Q ss_pred             CCCCCEEEccCCcCCCC-CCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccc-cccccCCCCCCE
Q 048289          178 LSSLTSLDLGNCGLQGS-IPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSI-PASLGNLSQLTY  255 (920)
Q Consensus       178 l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~  255 (920)
                      +++|+.|.++.|.++-. +...+..+|+|+.|+|.+|............+..|++|+|++|.+.... ....+.++.|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            45666666666655421 1122334566666666666311111113344556666666666654321 133566677777


Q ss_pred             EeCcCCcCCcc-Cccc-----ccCCCCCCEEEccCCcCccc-chhhhhcCCCCCEEECcCCCCCCc
Q 048289          256 LDLSYNNFSGH-IPST-----LSNLQQLRHLDLSNNKFTGQ-IPCIFANLTQLSFLDFSNNQLNGP  314 (920)
Q Consensus       256 L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~  314 (920)
                      |+++.+.+... .|+.     ...+++|++|++..|++..- .-..+..+++|+.|.+..|.+...
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            77777766543 2222     24567888888888887421 112345567777888777777643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=1.6e-10  Score=117.19  Aligned_cols=40  Identities=20%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             hccCCCCCCEEEccCCcCCCCCCcc----cCCCCCCCEEEccCC
Q 048289          174 FLTNLSSLTSLDLGNCGLQGSIPEN----IFRLPNLQNLILSYN  213 (920)
Q Consensus       174 ~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n  213 (920)
                      ++..+++|++||||+|-+....+..    +..+..|++|.|.+|
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC  130 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence            3445556666666666554333322    234555666666555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=1.2e-09  Score=130.60  Aligned_cols=127  Identities=30%  Similarity=0.325  Sum_probs=77.9

Q ss_pred             CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCC--CCCCCCC-CcCCCCCCCCEEeCCCCCCcccCCccccCCCC
Q 048289           52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFND--FNYSYIS-PGFTRFPNLAHLNLSVSSFSGQIPAEISHLSK  128 (920)
Q Consensus        52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~--~~~~~i~-~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~  128 (920)
                      ..+|++.+-++.+. .++.   -...+.|++|-+..|.  +..  ++ ..|..++.|++|||++|.--+.+|..|+.|-+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~---~~~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAG---SSENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             hheeEEEEeccchh-hccC---CCCCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            35566666665543 2221   2234467777777775  322  33 33677888888888887666688888888888


Q ss_pred             CCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCC
Q 048289          129 LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNC  189 (920)
Q Consensus       129 L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n  189 (920)
                      ||+|+++++.+     ..+|..+.+++.|.+|++..+.....+|.....+++|++|.+...
T Consensus       597 LryL~L~~t~I-----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  597 LRYLDLSDTGI-----SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhcccccCCCc-----cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            88888888755     345555666666666666655544344444444555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.87  E-value=7.6e-10  Score=109.28  Aligned_cols=133  Identities=33%  Similarity=0.357  Sum_probs=72.4

Q ss_pred             cCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCce
Q 048289          248 GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVT  327 (920)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  327 (920)
                      ...+.|+++|+++|.|+ .+.++..-.+.++.|+++.|.+...  ..++.+++|+.|++++|.++. +..+-..+.+.+.
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence            33455666666666665 3445555566666666666666522  225566666666666666552 2333344556666


Q ss_pred             eeccCccccccCCccccCCCCCCEEEccCCCCCCCc-hhhhhcCCCCCEEEccCCcCCCc
Q 048289          328 IYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSI-SNSISELVNLIDLSLSSNNLSGN  386 (920)
Q Consensus       328 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~  386 (920)
                      |.+++|.+.  .-.++..+-+|..||+++|+|.... -..++++|.|+.+.+.+|.+.+.
T Consensus       357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            666666553  1234445555666666666554211 12455555666666666655543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=4.1e-09  Score=100.85  Aligned_cols=110  Identities=30%  Similarity=0.366  Sum_probs=29.7

Q ss_pred             hcCCCCCEEECcCCCCCCccccccc-CCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 048289          296 ANLTQLSFLDFSNNQLNGPISSSVS-RLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI  374 (920)
Q Consensus       296 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  374 (920)
                      .+..++++|+|.+|.|+.+  +.++ .+.+|+.|++++|.++. + +.+..++.|++|++++|.++...+.....+++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            3445677777777777643  2343 45667777777777652 2 2355566666666666666643222123456666


Q ss_pred             EEEccCCcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289          375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS  409 (920)
Q Consensus       375 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  409 (920)
                      .|++++|++........+..+++|+.|++.+|+++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666654444444455555555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=6.9e-10  Score=109.57  Aligned_cols=137  Identities=25%  Similarity=0.269  Sum_probs=80.8

Q ss_pred             ccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCC
Q 048289          271 LSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE  350 (920)
Q Consensus       271 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  350 (920)
                      +..+..|+++||++|.|+ .+.++..-.++++.|++++|.+...  ..++.+++|+.||+++|.++ .+..+-..+-+++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            344556777777777776 5556666677777777777777643  23666677777777777665 3333334455566


Q ss_pred             EEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeec
Q 048289          351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS  430 (920)
Q Consensus       351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~  430 (920)
                      +|.|+.|.+...  ..+..+-+|..||+++|++.                         ..........+|.|+++.+.+
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-------------------------~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-------------------------ELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchh-------------------------hHHHhcccccccHHHHHhhcC
Confidence            666666655421  23444445555555555554                         333344445566666666666


Q ss_pred             cCCcCCch
Q 048289          431 CNISEFPD  438 (920)
Q Consensus       431 ~~l~~lp~  438 (920)
                      |.+..+++
T Consensus       409 NPl~~~vd  416 (490)
T KOG1259|consen  409 NPLAGSVD  416 (490)
T ss_pred             CCccccch
Confidence            66665554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.4e-09  Score=130.14  Aligned_cols=250  Identities=19%  Similarity=0.214  Sum_probs=146.5

Q ss_pred             CcEEEEECCCCCC-cccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCC
Q 048289           52 GHVTGLDLSCSRL-HGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLV  130 (920)
Q Consensus        52 ~~v~~L~L~~~~l-~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~  130 (920)
                      ..+++|-+..+.. ...++. ..|..++.|++|||++|.-... +|+.++.+-+||||+|+++.+. .+|..+++|..|.
T Consensus       545 ~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            3578888887752 223332 1477899999999999754333 9999999999999999999998 8999999999999


Q ss_pred             EEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCC--CCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCC--
Q 048289          131 SLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVD--MSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQ--  206 (920)
Q Consensus       131 ~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--  206 (920)
                      +||+..+....    .++.....+.+|++|.+....  .+......+.++.+|+.+.......  .+-..+..+++|.  
T Consensus       622 ~Lnl~~~~~l~----~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~  695 (889)
T KOG4658|consen  622 YLNLEVTGRLE----SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSL  695 (889)
T ss_pred             eeccccccccc----cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHH
Confidence            99999885432    225556679999999997764  2333345566677777777654433  1112233333333  


Q ss_pred             --EEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccC------CCCCCEEeCcCCcCCccCcccccCCCCCC
Q 048289          207 --NLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN------LSQLTYLDLSYNNFSGHIPSTLSNLQQLR  278 (920)
Q Consensus       207 --~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  278 (920)
                        .+.+.++ .....+..+..+.+|+.|.+.++.+..........      ++++..+.+.++... ..+.+..-.++|+
T Consensus       696 ~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~  773 (889)
T KOG4658|consen  696 LQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLT  773 (889)
T ss_pred             hHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCccc
Confidence              2222222 33333445666667777777766654322211111      112222222222111 1222223345666


Q ss_pred             EEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289          279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN  312 (920)
Q Consensus       279 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (920)
                      .|.+..+.....+......+..+..+.+..+.+.
T Consensus       774 ~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  774 SLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             EEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            6666665554444444444444444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.79  E-value=5.2e-09  Score=100.14  Aligned_cols=111  Identities=32%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             CcCCCCCCCEEEccCCcCccccccccc-CCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCC
Q 048289          222 KVNWSSPLRFMDLYGCNFMGSIPASLG-NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ  300 (920)
Q Consensus       222 ~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  300 (920)
                      .+.+..++++|+|++|.++..  +.++ .+.+|+.|++++|.++..  +.+..+++|++|++++|.++...+.....+++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            334444556666666665532  2343 456667777777776643  24566667777777777766432222235667


Q ss_pred             CCEEECcCCCCCCcc-cccccCCCcCceeeccCcccc
Q 048289          301 LSFLDFSNNQLNGPI-SSSVSRLHSLVTIYLSYNSLN  336 (920)
Q Consensus       301 L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  336 (920)
                      |++|++++|++.... -..+..+++|+.|++.+|.+.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777777777665421 123344455555555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=3.6e-09  Score=83.04  Aligned_cols=60  Identities=43%  Similarity=0.603  Sum_probs=39.1

Q ss_pred             CCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcc
Q 048289          749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL  808 (920)
Q Consensus       749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l  808 (920)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655556666666666666666666666666666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=6.8e-09  Score=81.47  Aligned_cols=61  Identities=36%  Similarity=0.549  Sum_probs=57.0

Q ss_pred             ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcc
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV  784 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l  784 (920)
                      +.|++|++++|+++...+..|..+++|++|++++|+++...|.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3579999999999977778999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=4.9e-09  Score=117.90  Aligned_cols=85  Identities=31%  Similarity=0.357  Sum_probs=57.5

Q ss_pred             ccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccccc---Cccc-ccCCCCCCee
Q 048289          726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE---IPWQ-LTSLNFLQVL  801 (920)
Q Consensus       726 l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~---ip~~-l~~l~~L~~L  801 (920)
                      ++.+++++|.+. .++..+..+..+..|++++|++...  ..+.....+..+..+.|.+...   .... ......+...
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            577788888877 3445667778888888888887765  3455666777778888876522   1111 4556777777


Q ss_pred             eccCCcccCCCC
Q 048289          802 NLSQNQLVGPIP  813 (920)
Q Consensus       802 ~ls~N~l~g~iP  813 (920)
                      .+.+|......|
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888887766554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=5.3e-09  Score=117.61  Aligned_cols=248  Identities=26%  Similarity=0.255  Sum_probs=146.5

Q ss_pred             hhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCC
Q 048289          393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTL  472 (920)
Q Consensus       393 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L  472 (920)
                      ..+..++.+.+..|.+..  .......+.+|+.+++.+|.+..+...+..+++|++|++++|.|+...+-.    .+..|
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L  142 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLL  142 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccch
Confidence            455666666677776653  122244566777777777777766665666666777777777666443322    33445


Q ss_pred             cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCc-ccccCCCCcCeEeCCCCcCCCc
Q 048289          473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGM  551 (920)
Q Consensus       473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~  551 (920)
                      +.|++++|.|+.+....                    .+..|+.+++++|.+...-+ . ...+.+++.+++++|.+...
T Consensus       143 ~~L~l~~N~i~~~~~~~--------------------~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  143 KELNLSGNLISDISGLE--------------------SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             hhheeccCcchhccCCc--------------------cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            56666666655554322                    13455555555555554333 2 45666777777777776522


Q ss_pred             Ccccccccc-cceeecCCCcccccCCccccCCC--cccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhc
Q 048289          552 IPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGS--RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLG  628 (920)
Q Consensus       552 ~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  628 (920)
                        ..+.... +..+++..|.++...+.  ..+.  +|+.+++++|++. ..+..+..+..+..|++.+|++...-  .+.
T Consensus       202 --~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~  274 (414)
T KOG0531|consen  202 --EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLE  274 (414)
T ss_pred             --cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--ccc
Confidence              2222222 44557777777644322  1222  3788888888887 33356777788888888888887442  244


Q ss_pred             CCCCCCEEEccCceeecccCC--CcccCCCCCCcEEEccCCcCcCCCc
Q 048289          629 ALSELQVLILRSNRFHGPITY--SVTRFPFPKLRILDLSNNEFTGVLP  674 (920)
Q Consensus       629 ~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p  674 (920)
                      ..+.+..+....|.+......  .......+.++.+.+..|+.....+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            556666777777766532211  1112346778888888888776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=3.2e-10  Score=111.96  Aligned_cols=135  Identities=26%  Similarity=0.261  Sum_probs=101.4

Q ss_pred             CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCC
Q 048289           78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNEL  157 (920)
Q Consensus        78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L  157 (920)
                      +.|++||||...++...+...++.|.+|+.|.|.++++.+.+...+.+-.+|+.||++.+..  +...++.-.+.+|+.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG--FTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc--cchhHHHHHHHhhhhH
Confidence            35999999998887654555578899999999999999988888899999999999999854  3456777889999999


Q ss_pred             CEEEcCCCCCCCCcchh-ccC-CCCCCEEEccCCcCC--C-CCCcccCCCCCCCEEEccCCC
Q 048289          158 QELVLNSVDMSYEVPSF-LTN-LSSLTSLDLGNCGLQ--G-SIPENIFRLPNLQNLILSYNK  214 (920)
Q Consensus       158 ~~L~L~~~~~~~~~~~~-l~~-l~~L~~L~Ls~n~l~--~-~~~~~l~~l~~L~~L~L~~n~  214 (920)
                      .+|++++|......... +.. -++|+.|+++++.-.  . .+..-..++++|.+|||++|.
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            99999999876544322 233 267888888887421  1 111223567778888887773

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=5.9e-09  Score=103.23  Aligned_cols=85  Identities=22%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             CCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCC--CcccCCCCC
Q 048289          127 SKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSI--PENIFRLPN  204 (920)
Q Consensus       127 ~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~  204 (920)
                      ++||+||||...++   ...+...+..|.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+.--...  .--+.+|+.
T Consensus       185 sRlq~lDLS~s~it---~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVIT---VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhhee---HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            35888888887554   3677778888888999999888888888888888888888888877532121  122456778


Q ss_pred             CCEEEccCCC
Q 048289          205 LQNLILSYNK  214 (920)
Q Consensus       205 L~~L~L~~n~  214 (920)
                      |..|++++|.
T Consensus       262 L~~LNlsWc~  271 (419)
T KOG2120|consen  262 LDELNLSWCF  271 (419)
T ss_pred             HhhcCchHhh
Confidence            8888888873

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.19  E-value=5.1e-07  Score=64.56  Aligned_cols=35  Identities=43%  Similarity=0.899  Sum_probs=25.2

Q ss_pred             CcccccccCccCCCCCCCCCcccCCCCcccCCCCCC--CCCccccceEec
Q 048289            1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEE--KDCCSWDGVTCD   48 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~--~~~c~w~gv~c~   48 (920)
                      ||++||+++..++.             +.+.+|+..  .+||.|.||+|+
T Consensus         7 aLl~~k~~l~~~~~-------------~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    7 ALLAFKKSLNNDPS-------------GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHCTT-SC--------------CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHhcccccC-------------cccccCCCcCCCCCeeeccEEeC
Confidence            68999999985332             389999876  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=2.2e-07  Score=81.62  Aligned_cols=87  Identities=26%  Similarity=0.358  Sum_probs=56.0

Q ss_pred             ccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccC
Q 048289          726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQ  805 (920)
Q Consensus       726 l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~  805 (920)
                      ++.++|++|.|....+..-...+..+.|+|++|.|+. +|.++..++.|+.|+++.|.+. ..|+.+..|.+|.+||..+
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence            4566777777764333323334466777777777763 4666777777777777777776 3455555677777777777


Q ss_pred             CcccCCCCCC
Q 048289          806 NQLVGPIPQG  815 (920)
Q Consensus       806 N~l~g~iP~~  815 (920)
                      |.+. +||..
T Consensus       133 na~~-eid~d  141 (177)
T KOG4579|consen  133 NARA-EIDVD  141 (177)
T ss_pred             Cccc-cCcHH
Confidence            7665 56654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.11  E-value=1.6e-07  Score=97.87  Aligned_cols=277  Identities=18%  Similarity=0.156  Sum_probs=114.9

Q ss_pred             CCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCC-CCCCcchhcc-CCCCCCEEEccCCc-CCCCCCcc-cCCCC
Q 048289          128 KLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVD-MSYEVPSFLT-NLSSLTSLDLGNCG-LQGSIPEN-IFRLP  203 (920)
Q Consensus       128 ~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~-~~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~-l~~l~  203 (920)
                      .|+.|.+++++  .+.+..+.....+++++++|.+.+|. ++......++ .+++|++|++..|. ++...-.. ...++
T Consensus       139 ~lk~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            45555555552  23344455555555566655555553 2222222232 35566666665532 22221121 12466


Q ss_pred             CCCEEEccCCCCCCcCC--CCcCCCCCCCEEEccCCcCccc--ccccccCCCCCCEEeCcCCc-CCccCc-ccccCCCCC
Q 048289          204 NLQNLILSYNKNLTSVF--PKVNWSSPLRFMDLYGCNFMGS--IPASLGNLSQLTYLDLSYNN-FSGHIP-STLSNLQQL  277 (920)
Q Consensus       204 ~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L  277 (920)
                      +|++|+++++..+.+.-  +-...+..++.+.+.+|.-.+.  +-..-+.+..+..+++..+. +++..- ..-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            67777777665444311  1233344455554444422110  00011233334444444432 221110 011234556


Q ss_pred             CEEEccCCcCccc-chhhh-hcCCCCCEEECcCCCC-CCcccccc-cCCCcCceeeccCcccc--ccCCccccCCCCCCE
Q 048289          278 RHLDLSNNKFTGQ-IPCIF-ANLTQLSFLDFSNNQL-NGPISSSV-SRLHSLVTIYLSYNSLN--GTIPSGLFTSPLLES  351 (920)
Q Consensus       278 ~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~  351 (920)
                      +.|+.+++...+. .-..+ .+..+|+.+.++.++- +...-..+ .+++.|+.+++..+...  +.+...-.+++.|+.
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            6666665543221 11122 2455666666666542 11111111 23455555555554332  111122223455555


Q ss_pred             EEccCCCCC-CCchhhh----hcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCC
Q 048289          352 IDLRNNQLT-GSISNSI----SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN  406 (920)
Q Consensus       352 L~L~~n~l~-~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  406 (920)
                      +.++++... +.....+    .....|..+.+++++.+.+.....+..+++|+.+++-++
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            555555322 1100111    123345555555555444444444444444444444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.10  E-value=6.4e-07  Score=87.90  Aligned_cols=91  Identities=20%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             CCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCCC---CcccCC-------ccccCCCCCCEEEcCCCCCCCCC
Q 048289           77 LPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVSS---FSGQIP-------AEISHLSKLVSLDLSGNSQLGLD  143 (920)
Q Consensus        77 l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n~---~~~~~p-------~~l~~l~~L~~L~Ls~n~~~~~~  143 (920)
                      +..+..+|||+|.|...   .+...+.+-++|+..+++.-.   ..+.++       +.+-+|++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            44455555555554332   122334555666666665421   112222       23456677777777777655444


Q ss_pred             CchHHHHHhcCCCCCEEEcCCCCC
Q 048289          144 TPVLKALVQNLNELQELVLNSVDM  167 (920)
Q Consensus       144 ~~~l~~~~~~l~~L~~L~L~~~~~  167 (920)
                      ...+...+++-+.|.+|.+++|.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCC
Confidence            455555666666666666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=2.4e-07  Score=102.55  Aligned_cols=179  Identities=30%  Similarity=0.360  Sum_probs=119.9

Q ss_pred             CcCCCCCCCEEEccCCcCcccccccccCC-CCCCEEeCcCCcCC----------ccCcccccCCCCCCEEEccCCcCccc
Q 048289          222 KVNWSSPLRFMDLYGCNFMGSIPASLGNL-SQLTYLDLSYNNFS----------GHIPSTLSNLQQLRHLDLSNNKFTGQ  290 (920)
Q Consensus       222 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~L~~n~l~~~  290 (920)
                      .+..+.+|++|.+.+|.+...  ..+..+ .+|++|--.+ .+.          |.+..++ ....|.+.+.+.|.+. .
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-h
Confidence            667778899999999887641  111111 2333332221 111          1111111 1235777778888877 5


Q ss_pred             chhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcC
Q 048289          291 IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISEL  370 (920)
Q Consensus       291 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  370 (920)
                      ...++.-++.|+.|+|++|+++..  +.+..+++|++|||++|.+. .+|..-..-.+|..|.+++|.++..  ..+.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhh
Confidence            566777788888899999888754  36778888899999988886 4443222223488888888887743  346778


Q ss_pred             CCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCcccc
Q 048289          371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL  410 (920)
Q Consensus       371 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  410 (920)
                      .+|..||+++|-+.+.-....+..+..|+.|+|.+|++..
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            8888888888888877777777888888888888887753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.94  E-value=3.8e-07  Score=101.05  Aligned_cols=200  Identities=29%  Similarity=0.290  Sum_probs=126.4

Q ss_pred             CCCCEEEccCCcCcccc-cccccCCCCCCEEeCcCCcCCccCcccccCC-CCCCEEEccCCcCcccchhhhh--------
Q 048289          227 SPLRFMDLYGCNFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPSTLSNL-QQLRHLDLSNNKFTGQIPCIFA--------  296 (920)
Q Consensus       227 ~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~--------  296 (920)
                      ++++++.+-...-.+.. |-.+..+..|++|.+.++.+..  ...+..+ ..|++|.-. |.+. .+...|.        
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~-Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLD-ALRHVFASCGGDISN  159 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHH-HHHHHHHHhcccccc
Confidence            34444444333222222 4556677788888888887763  1222222 234444322 1111 0111111        


Q ss_pred             --cCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 048289          297 --NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI  374 (920)
Q Consensus       297 --~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  374 (920)
                        ...+|...++++|.+. .+..++.-++.|+.|+|++|+++..  ..+..++.|++|||+.|.+....--....+. |+
T Consensus       160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ  235 (1096)
T ss_pred             chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-he
Confidence              1135777788888876 4566777788899999999988733  3677888999999999988744333334444 88


Q ss_pred             EEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc
Q 048289          375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP  437 (920)
Q Consensus       375 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp  437 (920)
                      .|.+++|.++   ....+.++++|+.||+++|-+....-....+.+..|+.|.+.+|.+-.-|
T Consensus       236 ~L~lrnN~l~---tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  236 LLNLRNNALT---TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             eeeecccHHH---hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999998876   34456788888889999888876666666666777788888888765433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.92  E-value=2.2e-07  Score=96.88  Aligned_cols=278  Identities=23%  Similarity=0.175  Sum_probs=126.7

Q ss_pred             CCCEEECCCCCCCC-CCCCCcCCCCCCCCEEeCCCCC-CcccCCccc-cCCCCCCEEEcCCCCCCCCCCchHHHHHhcCC
Q 048289           79 HLQILNLAFNDFNY-SYISPGFTRFPNLAHLNLSVSS-FSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLN  155 (920)
Q Consensus        79 ~L~~L~Ls~~~~~~-~~i~~~~~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~  155 (920)
                      .|+.|.++++.-.+ ..+.....+++++++|++.++. +++..-.++ ..+++|++|++..|.  .+.+..+......|+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--SITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc--hhHHHHHHHHHHhhh
Confidence            45555555553211 1122233455666666555553 222111122 235566666666542  122234444555566


Q ss_pred             CCCEEEcCCCC-CCCCcch-hccCCCCCCEEEccCCcCCCC--CCcccCCCCCCCEEEccCCCCCCcCCC--CcCCCCCC
Q 048289          156 ELQELVLNSVD-MSYEVPS-FLTNLSSLTSLDLGNCGLQGS--IPENIFRLPNLQNLILSYNKNLTSVFP--KVNWSSPL  229 (920)
Q Consensus       156 ~L~~L~L~~~~-~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L  229 (920)
                      +|++|++++|. +++.... .+.++..++.+.+.+|.-.+.  +-..-+.+..+.++++..|..++..--  .-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            66666666653 2221111 223344455554444421100  000012233344444444433322211  12234555


Q ss_pred             CEEEccCCcCccc-ccccc-cCCCCCCEEeCcCCc-CCccCcccc-cCCCCCCEEEccCCcCc--ccchhhhhcCCCCCE
Q 048289          230 RFMDLYGCNFMGS-IPASL-GNLSQLTYLDLSYNN-FSGHIPSTL-SNLQQLRHLDLSNNKFT--GQIPCIFANLTQLSF  303 (920)
Q Consensus       230 ~~L~L~~n~~~~~-~~~~l-~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~  303 (920)
                      ++++.+++...+. .-.++ .++.+|+.|.++.++ ++..--..+ .+++.|+.+++..+...  +.+...-.+++.|+.
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            6666655543221 11122 355666666666654 222111112 24566666666666543  112222235667777


Q ss_pred             EECcCCCCCCcc-----cccccCCCcCceeeccCcccc-ccCCccccCCCCCCEEEccCCC
Q 048289          304 LDFSNNQLNGPI-----SSSVSRLHSLVTIYLSYNSLN-GTIPSGLFTSPLLESIDLRNNQ  358 (920)
Q Consensus       304 L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~  358 (920)
                      +.++.+......     ...-..+..|..+.++++... ...-..+..+++|+.+++-+++
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            777766443211     112234566777777777543 2233445567788888887775

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.92  E-value=2.6e-06  Score=83.70  Aligned_cols=38  Identities=18%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             CCCCCCCEEeCCCCCCcccCCcc----ccCCCCCCEEEcCCC
Q 048289          100 TRFPNLAHLNLSVSSFSGQIPAE----ISHLSKLVSLDLSGN  137 (920)
Q Consensus       100 ~~l~~L~~L~Ls~n~~~~~~p~~----l~~l~~L~~L~Ls~n  137 (920)
                      ..+..+..++||+|.|.......    |.+-.+|+..+++.-
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~   68 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA   68 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence            34566677777777665433222    333456666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=5.9e-06  Score=82.38  Aligned_cols=65  Identities=25%  Similarity=0.294  Sum_probs=38.3

Q ss_pred             hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc--hhhhcccccceeccCCCccCC
Q 048289          394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP--DFLRTQHRLQILDLSDNQIRG  458 (920)
Q Consensus       394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp--~~l~~~~~L~~L~Ls~n~l~~  458 (920)
                      -++++..+-+..|++...........+|.+.-|++..+++....  +.+..++.|..|.++++.+.+
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            34666666666666655554555555666666666666665443  445556666666666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=4.6e-06  Score=83.12  Aligned_cols=108  Identities=24%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             CCCCEEEccCCcCccc--chhhhhcCCCCCEEECcCCCCCCc--ccccccCCCcCceeeccCccccccCCccccCCCCCC
Q 048289          275 QQLRHLDLSNNKFTGQ--IPCIFANLTQLSFLDFSNNQLNGP--ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE  350 (920)
Q Consensus       275 ~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  350 (920)
                      .-++.|.+.++.+...  ....-..++.++.+++.+|.++..  +...+.++|.|+.|+++.|++...|...-....+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            3444555556655421  111122456777788888877642  334456677777777777776643322213445666


Q ss_pred             EEEccCCCCCCC-chhhhhcCCCCCEEEccCCc
Q 048289          351 SIDLRNNQLTGS-ISNSISELVNLIDLSLSSNN  382 (920)
Q Consensus       351 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~  382 (920)
                      .|-|.+..+.-. ....+..+|.++.|.++.|.
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            666666655422 22234455556666665553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=2.1e-06  Score=75.69  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             CCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccC
Q 048289          749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVG  810 (920)
Q Consensus       749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  810 (920)
                      .|+..+|++|.+....+.--...+.++.|+|++|.|+ .+|..++.++.|+.+|++.|++..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc
Confidence            3344455555554332222222334555555555555 344445555555555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=6.1e-05  Score=81.24  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             ccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCC
Q 048289          579 FSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK  658 (920)
Q Consensus       579 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  658 (920)
                      +..+.+++.|++++|.++ .+| .+  -++|++|.+++|.--..+|..+  .++|+.|++++|.....+|        ++
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cc
Confidence            344678999999999887 456 22  2469999998865444666655  3578899998884322222        45


Q ss_pred             CcEEEccCCcC
Q 048289          659 LRILDLSNNEF  669 (920)
Q Consensus       659 L~~L~Ls~N~l  669 (920)
                      |+.|+++++..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            77788776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=4.4e-05  Score=54.61  Aligned_cols=36  Identities=31%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             cccEEEcCCCcCCCCchhhhhccCCCceEeccCcccc
Q 048289          725 IFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLT  761 (920)
Q Consensus       725 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  761 (920)
                      +|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3556666666666 34555666666666666666655

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=2.8e-05  Score=55.64  Aligned_cols=36  Identities=42%  Similarity=0.719  Sum_probs=23.2

Q ss_pred             CCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289          749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA  785 (920)
Q Consensus       749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  785 (920)
                      +|++|++++|+|+. +|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            56777777777763 4555677777777777777666

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00019  Score=77.58  Aligned_cols=54  Identities=15%  Similarity=0.226  Sum_probs=25.8

Q ss_pred             hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeecc-CCcCCchhhhcccccceeccCCC
Q 048289          394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC-NISEFPDFLRTQHRLQILDLSDN  454 (920)
Q Consensus       394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~-~l~~lp~~l~~~~~L~~L~Ls~n  454 (920)
                      .+.+++.|++++|.++...     .-.++|++|.+++| .++.+|+.+.  ++|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            3566666666666543321     11234555655554 3344444331  34455555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00017  Score=68.45  Aligned_cols=104  Identities=25%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             CEEECcCCCCCCccccccc-CCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccC
Q 048289          302 SFLDFSNNQLNGPISSSVS-RLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSS  380 (920)
Q Consensus       302 ~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  380 (920)
                      +.+++.+.++..+..  ++ .......+|+++|.+.  -...+..++.|.+|.+.+|+|+.+.|.--.-+++|+.|.+.+
T Consensus        22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccchhh--ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            445555555442211  11 1234566777777664  123455666777777777777765555445556677777777


Q ss_pred             CcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289          381 NNLSGNVELYMFAELKNLLGLDLSHNSLS  409 (920)
Q Consensus       381 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  409 (920)
                      |.+....+...+..|++|++|.+-+|+++
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchh
Confidence            76665445555555566666666555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.35  E-value=0.00032  Score=66.68  Aligned_cols=83  Identities=23%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             CCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCch-hhhhcCCCCCEEEc
Q 048289          300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSIS-NSISELVNLIDLSL  378 (920)
Q Consensus       300 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L  378 (920)
                      +...+++++|.+...  ..|..++.|..|.+.+|.++..-|.-...+++|+.|.|.+|.+..... ..+..|++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            455666666666422  345566666666666666664444444445666666666666543211 23455666666666


Q ss_pred             cCCcCC
Q 048289          379 SSNNLS  384 (920)
Q Consensus       379 ~~n~l~  384 (920)
                      -+|..+
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.33  E-value=9.8e-05  Score=86.81  Aligned_cols=150  Identities=21%  Similarity=0.253  Sum_probs=79.9

Q ss_pred             CCCCEEEcCCCCCCCCCCchHHH-HHhcCCCCCEEEcCCCCCCCC-cchhccCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 048289          127 SKLVSLDLSGNSQLGLDTPVLKA-LVQNLNELQELVLNSVDMSYE-VPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPN  204 (920)
Q Consensus       127 ~~L~~L~Ls~n~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  204 (920)
                      .+|++||+++.....   ..++. ....+|.|+.|.+.+-.+... .-....++++|..||+|+++++..  ..++++++
T Consensus       122 ~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            456666666643321   22332 233356666666666544222 223344566666666666666532  45666666


Q ss_pred             CCEEEccCCCCCCc--CCCCcCCCCCCCEEEccCCcCcccc------cccccCCCCCCEEeCcCCcCCccCcccc-cCCC
Q 048289          205 LQNLILSYNKNLTS--VFPKVNWSSPLRFMDLYGCNFMGSI------PASLGNLSQLTYLDLSYNNFSGHIPSTL-SNLQ  275 (920)
Q Consensus       205 L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~------~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~  275 (920)
                      |++|.+.+- .+..  .+..+.++++|++||+|........      -+.-..+|+|+.||.+++.+.+.+-+.+ ..-+
T Consensus       197 Lq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~  275 (699)
T KOG3665|consen  197 LQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP  275 (699)
T ss_pred             HHHHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence            666666544 2222  1225566677777777665433211      1223457899999999888775433332 2344


Q ss_pred             CCCEEEc
Q 048289          276 QLRHLDL  282 (920)
Q Consensus       276 ~L~~L~L  282 (920)
                      +|+.+..
T Consensus       276 ~L~~i~~  282 (699)
T KOG3665|consen  276 NLQQIAA  282 (699)
T ss_pred             cHhhhhh
Confidence            4544433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.33  E-value=0.00017  Score=84.91  Aligned_cols=137  Identities=23%  Similarity=0.284  Sum_probs=81.8

Q ss_pred             CCCCCEEEcCCCCC-CCCcchhccC-CCCCCEEEccCCcCCCC-CCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCC
Q 048289          154 LNELQELVLNSVDM-SYEVPSFLTN-LSSLTSLDLGNCGLQGS-IPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLR  230 (920)
Q Consensus       154 l~~L~~L~L~~~~~-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  230 (920)
                      -.+|++|++++... +..-|..++. +|+|+.|.+.+-.+... +.....++++|..||+++. +++.. ..++.+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence            35677888777543 2233444443 68888888877655422 2223356778888888776 33322 4567777777


Q ss_pred             EEEccCCcCcc-cccccccCCCCCCEEeCcCCcCCccC--c----ccccCCCCCCEEEccCCcCcccch
Q 048289          231 FMDLYGCNFMG-SIPASLGNLSQLTYLDLSYNNFSGHI--P----STLSNLQQLRHLDLSNNKFTGQIP  292 (920)
Q Consensus       231 ~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~p  292 (920)
                      +|.+.+-.+.. ..-..+.++++|+.||+|........  .    +.-..+|+|+.||.++..+...+-
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            77777766653 22234667788888888775443211  1    111246788888888777664433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0028  Score=58.33  Aligned_cols=82  Identities=22%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             ccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCc
Q 048289          247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLV  326 (920)
Q Consensus       247 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  326 (920)
                      |.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            44444555555443 233333344444445555555443 3323333444444455555533 22222233444444444


Q ss_pred             eeecc
Q 048289          327 TIYLS  331 (920)
Q Consensus       327 ~L~L~  331 (920)
                      .+++.
T Consensus        85 ~i~~~   89 (129)
T PF13306_consen   85 NIDIP   89 (129)
T ss_dssp             EEEET
T ss_pred             ccccC
Confidence            44443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.74  E-value=0.0036  Score=57.62  Aligned_cols=123  Identities=25%  Similarity=0.324  Sum_probs=63.6

Q ss_pred             ccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCC
Q 048289          269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL  348 (920)
Q Consensus       269 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  348 (920)
                      ..|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +......+|..+++++.+.+.. .+.......+..++.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4577788888888875 455555667888888888888775 6656667788887888888865 333233344555788


Q ss_pred             CCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCC
Q 048289          349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNL  398 (920)
Q Consensus       349 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  398 (920)
                      |+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            888888665 544455566666 777777765 222 3455666666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.04  E-value=0.0045  Score=61.77  Aligned_cols=56  Identities=25%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             CCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc----hhhhcccccceecc
Q 048289          396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP----DFLRTQHRLQILDL  451 (920)
Q Consensus       396 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp----~~l~~~~~L~~L~L  451 (920)
                      ++|+++++++|++.....+.....+++|..|++.+|..+.+.    ..+.-+++|++||-
T Consensus        91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            444444444444443333333344455555666665554432    23444555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.00046  Score=68.62  Aligned_cols=85  Identities=24%  Similarity=0.202  Sum_probs=60.5

Q ss_pred             CCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceE
Q 048289          322 LHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGL  401 (920)
Q Consensus       322 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  401 (920)
                      +.+.+.|++.+|.+.+.  .....++.|+.|.|+-|.|+..  ..+..|++|++|+|..|.|........+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34455566666665422  2234567788888888877754  3477888888888888888876777788888888888


Q ss_pred             EcCCCcccc
Q 048289          402 DLSHNSLSL  410 (920)
Q Consensus       402 ~Ls~n~l~~  410 (920)
                      .|..|...+
T Consensus        94 WL~ENPCc~  102 (388)
T KOG2123|consen   94 WLDENPCCG  102 (388)
T ss_pred             hhccCCccc
Confidence            888887644

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.80  E-value=0.0023  Score=74.14  Aligned_cols=110  Identities=28%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             CCCCCEEEccCCCCCCc--CCCCcCCCCCCCEEEccCC-cCccccc----ccccCCCCCCEEeCcCCc-CCccCccccc-
Q 048289          202 LPNLQNLILSYNKNLTS--VFPKVNWSSPLRFMDLYGC-NFMGSIP----ASLGNLSQLTYLDLSYNN-FSGHIPSTLS-  272 (920)
Q Consensus       202 l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n-~~~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~p~~l~-  272 (920)
                      ++.|+.|.+..+..+..  ..+....++.|+.|+++++ ......+    .....+.+|+.|+++.+. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666666543332  1234445556666666542 1111111    122334555555555554 3322222222 


Q ss_pred             CCCCCCEEEccCCc-Cccc-chhhhhcCCCCCEEECcCCCC
Q 048289          273 NLQQLRHLDLSNNK-FTGQ-IPCIFANLTQLSFLDFSNNQL  311 (920)
Q Consensus       273 ~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l  311 (920)
                      .+++|++|.+.+|. ++.. +......++.|++|+++.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            24555555544444 2211 112223344555555554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.79  E-value=0.0017  Score=75.39  Aligned_cols=110  Identities=25%  Similarity=0.263  Sum_probs=47.0

Q ss_pred             CCCCCEEEccCCcCCCC--CCcccCCCCCCCEEEccCCCCCCcCC-----CCcCCCCCCCEEEccCCc-Cccccccccc-
Q 048289          178 LSSLTSLDLGNCGLQGS--IPENIFRLPNLQNLILSYNKNLTSVF-----PKVNWSSPLRFMDLYGCN-FMGSIPASLG-  248 (920)
Q Consensus       178 l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~-----~~~~~l~~L~~L~L~~n~-~~~~~~~~l~-  248 (920)
                      ++.|+.|.+..+.-...  .-.....+++|+.|+++++.......     .....+++|+.++++.+. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555532212  12233445566666655420111110     122334555566665555 3322222222 


Q ss_pred             CCCCCCEEeCcCCc-CCccC-cccccCCCCCCEEEccCCcC
Q 048289          249 NLSQLTYLDLSYNN-FSGHI-PSTLSNLQQLRHLDLSNNKF  287 (920)
Q Consensus       249 ~l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l  287 (920)
                      .+++|++|.+.++. +++.- -.....++.|++|++++|..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            25556666555444 33221 11123455566666665544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.56  E-value=0.0094  Score=59.56  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             CCCCCcEEECCCC--cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289          605 NCSFLEVLDVGNN--RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG  671 (920)
Q Consensus       605 ~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  671 (920)
                      .+++|+.|.++.|  ++.+-++.....+++|++|++++|++... ..--....+.+|..||+.+|.-+.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCccc
Confidence            3344444444444  33333333333444555555555544320 000001234456666666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.56  E-value=0.0037  Score=37.12  Aligned_cols=12  Identities=58%  Similarity=0.778  Sum_probs=5.0

Q ss_pred             CccccCCCCccc
Q 048289          774 LESLDLSSNKVA  785 (920)
Q Consensus       774 L~~L~Ls~N~l~  785 (920)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.14  E-value=0.008  Score=35.66  Aligned_cols=19  Identities=47%  Similarity=0.585  Sum_probs=9.1

Q ss_pred             CceEeccCccccCCcCcccc
Q 048289          750 LKGLNFSHNKLTGLIPYSLE  769 (920)
Q Consensus       750 L~~L~Ls~N~l~~~ip~~~~  769 (920)
                      |+.|||++|+|+ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=0.0036  Score=62.54  Aligned_cols=67  Identities=25%  Similarity=0.243  Sum_probs=37.2

Q ss_pred             hhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc--hhhhcccccceeccCCCccCCCCCc
Q 048289          393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP--DFLRTQHRLQILDLSDNQIRGGIPN  462 (920)
Q Consensus       393 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~~~~  462 (920)
                      ..++.|+.|.|+-|+|+.   ......|.+|++|++..|.|..+.  ..+.++++|+.|.|..|...+.-+.
T Consensus        38 ~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             HhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence            344444444444444422   222334555555555555555554  4567777888888887777665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.05  E-value=0.0024  Score=72.09  Aligned_cols=60  Identities=30%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             CCEEEccCCcCccc----chhhhhcC-CCCCEEECcCCCCCCccc----ccccCCCcCceeeccCcccc
Q 048289          277 LRHLDLSNNKFTGQ----IPCIFANL-TQLSFLDFSNNQLNGPIS----SSVSRLHSLVTIYLSYNSLN  336 (920)
Q Consensus       277 L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~  336 (920)
                      +..|++..|.+.+.    ....+..+ ..+++++++.|.++....    ..+..++.++++.++.|.+.
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            44455555554422    12223333 455666666666654322    23344556666666666654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.58  E-value=0.002  Score=72.70  Aligned_cols=66  Identities=35%  Similarity=0.424  Sum_probs=37.9

Q ss_pred             cCCCC-CCEEeCcCCcCCcc----CcccccCC-CCCCEEEccCCcCccc----chhhhhcCCCCCEEECcCCCCCC
Q 048289          248 GNLSQ-LTYLDLSYNNFSGH----IPSTLSNL-QQLRHLDLSNNKFTGQ----IPCIFANLTQLSFLDFSNNQLNG  313 (920)
Q Consensus       248 ~~l~~-L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~  313 (920)
                      ...+. +..+++..|.+.+.    ....+..+ ..+++++++.|.++..    +...+..++.++.+.+++|.+..
T Consensus       229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            33444 55566666665533    11223333 5567777777777643    33445566777777787777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.15  E-value=0.028  Score=54.88  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL  803 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  803 (920)
                      ...+.||++.|++. ..-..|.-++.|..||++.|.+. ..|..++.+..+..+++..|.++ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            45688999999987 34456777888999999999987 56889999999999999888887 67889999999999999


Q ss_pred             cCCccc
Q 048289          804 SQNQLV  809 (920)
Q Consensus       804 s~N~l~  809 (920)
                      -+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            988764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.58  E-value=0.27  Score=26.98  Aligned_cols=15  Identities=27%  Similarity=0.410  Sum_probs=5.9

Q ss_pred             cCceEeeeccCCcCC
Q 048289          422 YLSMLSLSSCNISEF  436 (920)
Q Consensus       422 ~L~~L~l~~~~l~~l  436 (920)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            345555555554444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.35  E-value=0.017  Score=56.25  Aligned_cols=82  Identities=20%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCE
Q 048289           52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS  131 (920)
Q Consensus        52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  131 (920)
                      .+|+.||++.+.+... ..  -+..++.|..||++.|++..  +|..++....++.+++..|..+ ..|.+++..+++++
T Consensus        42 kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            5788999988876532 22  46778888888999888765  7888888888888888888887 78888999999999


Q ss_pred             EEcCCCCC
Q 048289          132 LDLSGNSQ  139 (920)
Q Consensus       132 L~Ls~n~~  139 (920)
                      +++.+|.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            99888853

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.45  E-value=0.45  Score=29.42  Aligned_cols=13  Identities=46%  Similarity=0.751  Sum_probs=5.4

Q ss_pred             CCccccCCCCccc
Q 048289          773 QLESLDLSSNKVA  785 (920)
Q Consensus       773 ~L~~L~Ls~N~l~  785 (920)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.45  E-value=0.45  Score=29.42  Aligned_cols=13  Identities=46%  Similarity=0.751  Sum_probs=5.4

Q ss_pred             CCccccCCCCccc
Q 048289          773 QLESLDLSSNKVA  785 (920)
Q Consensus       773 ~L~~L~Ls~N~l~  785 (920)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.03  E-value=0.73  Score=28.45  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=13.2

Q ss_pred             cCCCceEeccCccccCCcCccc
Q 048289          747 LNSLKGLNFSHNKLTGLIPYSL  768 (920)
Q Consensus       747 l~~L~~L~Ls~N~l~~~ip~~~  768 (920)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3466777777777765544443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.03  E-value=0.73  Score=28.45  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=13.2

Q ss_pred             cCCCceEeccCccccCCcCccc
Q 048289          747 LNSLKGLNFSHNKLTGLIPYSL  768 (920)
Q Consensus       747 l~~L~~L~Ls~N~l~~~ip~~~  768 (920)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3466777777777765544443

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=83.63  E-value=6.8  Score=43.02  Aligned_cols=65  Identities=31%  Similarity=0.267  Sum_probs=37.9

Q ss_pred             hcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCC------CCcccceEecccCcCCCCCCC
Q 048289          441 RTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELL------PWKNLRYLDLRSNSLKGSIPF  509 (920)
Q Consensus       441 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------~~~~L~~L~L~~n~l~~~~~~  509 (920)
                      ..-+.++++|++.|.+....|..+.....+    +.++.+.++.-...      .-..+.+++++.|.....+|.
T Consensus       162 rpnpr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~  232 (553)
T KOG4242|consen  162 RPNPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR  232 (553)
T ss_pred             CCcchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence            344667888888888887777665432332    45555554433221      112466777777766666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	920
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-40
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-40
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-11
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-06
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		4e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		9e-06
3oja_A	487	Crystal Structure Of Lrim1APL1C COMPLEX Length = 48		3e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		8e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		8e-05
3o53_A	317	Crystal Structure Of Lrim1 Leucine-Rich Repeat Doma		9e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		1e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		2e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		2e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-04
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-04
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		2e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		4e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		4e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		4e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		5e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		6e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		6e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		8e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  163 bits (413), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 202/685 (29%), Positives = 291/685 (42%), Gaps = 111/685 (16%)
Query: 226 SSPLRFMDLYGCNFMGSIPA--SLGNLSQLTYLDLSYN--NFSGHIPSTLSNLQQLRHLD 281
           S+ L  +DL   +  G +    SLG+ S L +L++S N  +F G +   L  L  L  LD
Sbjct: 96  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLD 154
Query: 282 LSNNKFTGQ--IPCIFAN-LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
           LS N  +G   +  + ++   +L  L  S N+++G +   VSR  +L  + +S N+ +  
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 212
Query: 339 IPSGLFTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNX 398
           IP  L     L+ +D+  N+L+G  S +IS                   EL +     N 
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCT----------------ELKLLNISSNQ 255
Query: 399 XXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQ-HRLQILDLSDNQI 456
                           P+ S    L  LSL+    + E PDFL      L  LDLS N  
Sbjct: 256 FVGPIPPL--------PLKS----LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 457 RGGIP-----------------NWIWNVGKDTL------NHLNLSHNFLTGIELLPWKNL 493
            G +P                 N+   +  DTL        L+LS N  +G       NL
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 494 RY----LDLRSNSLKGSIPFLPP-------SLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
                 LDL SN+  G  P LP        +L  + + NN  +G+IP +  N S +  ++
Sbjct: 364 SASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 543 LSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
           LS N L+G IP  L + S L  L + +N   G IPQ       L  L L+ N L G +P 
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661
            L NC+ L  + + NNR+ G  P W+G L  L +L L +N F G I   +       L  
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIW 539
Query: 662 LDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYIN---YGNEYYSA--ILTVKGVN 716
           LDL+ N F G +P   F+  Q+     N  A    +YI       E + A  +L  +G+ 
Sbjct: 540 LDLNTNLFNGTIPAAMFK--QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 717 MEMEKVL------NIFTTI------------------DLSGNKFQGRIPEVVGKLNSLKG 752
            E    L      NI + +                  D+S N   G IP+ +G +  L  
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Query: 753 LNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPI 812
           LN  HN ++G IP  + +L  L  LDLSSNK+ G IP  ++                GPI
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 813 PQGKQFHTFSSDSYNGNMGLCGFPL 837
           P+  QF TF    +  N GLCG+PL
Sbjct: 718 PEMGQFETFPPAKFLNNPGLCGYPL 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  163 bits (413), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 197/664 (29%), Positives = 282/664 (42%), Gaps = 109/664 (16%)
Query: 245 ASLGNLSQLTYLDLSYN--NFSGHIPSTLSNLQQLRHLDLSNNKFTGQ--IPCIFAN-LT 299
            SLG+ S L +L++S N  +F G +   L  L  L  LDLS N  +G   +  + ++   
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
           +L  L  S N+++G +   VSR  +L  + +S N+ +  IP  L     L+ +D+  N+L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 360 TGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXXXXXXXXXXPVNSS 419
           +G  S +IS                   EL +     N                 P+ S 
Sbjct: 236 SGDFSRAISTCT----------------ELKLLNISSNQFVGPIPPL--------PLKS- 270
Query: 420 FPYLSMLSLSSCNIS-EFPDFLRTQ-HRLQILDLSDNQIRGGIP---------------- 461
              L  LSL+    + E PDFL      L  LDLS N   G +P                
Sbjct: 271 ---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 462 -NWIWNVGKDTL------NHLNLSHNFLTGIELLPWKNLRY----LDLRSNSLKGSIPFL 510
            N+   +  DTL        L+LS N  +G       NL      LDL SN+  G  P L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--PIL 385
Query: 511 PP-------SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLW 562
           P        +L  + + NN  +G+IP +  N S +  ++LS N L+G IP  L + S L 
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
            L + +N   G IPQ       L  L L+ N L G +P  L NC+ L  + + NNR+ G 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQ 682
            P W+G L  L +L L +N F G I   +       L  LDL+ N F G +P   F+  Q
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFK--Q 561
Query: 683 AMMHGNNNSAEGGNMYIN---YGNEYYSA--ILTVKGVNMEMEKVL------NIFTTI-- 729
           +     N  A    +YI       E + A  +L  +G+  E    L      NI + +  
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 730 ----------------DLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQ 773
                           D+S N   G IP+ +G +  L  LN  HN ++G IP  + +L  
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 774 LESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSDSYNGNMGLC 833
           L  LDLSSNK+ G IP  ++                GPIP+  QF TF    +  N GLC
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Query: 834 GFPL 837
           G+PL
Sbjct: 742 GYPL 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 168/432 (38%), Gaps = 126/432 (29%)
Query: 441 RTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLT-------GIELLPWKNL 493
           +    L  LDLS N + G +           L  LN+S N L        G++L    +L
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL---NSL 153
Query: 494 RYLDLRSNSLKGS------IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS 547
             LDL +NS+ G+      +      L  +++S NK+SG++ +S C       VNL    
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-------VNLE--- 203
Query: 548 LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCS 607
                          FLD+  NNF   IP                          L +CS
Sbjct: 204 ---------------FLDVSSNNFSTGIP-------------------------FLGDCS 223
Query: 608 FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNN 667
            L+ LD+  N+++G F   +   +EL++L + SN+F GPI       P   L+ L L+ N
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PPLPLKSLQYLSLAEN 279
Query: 668 EFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGV------------ 715
           +FTG +P          + G  ++  G ++    GN +Y A+    G             
Sbjct: 280 KFTGEIPD--------FLSGACDTLTGLDL---SGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 716 ----NMEMEKVLNI--FTTIDLSGNKFQGRIPEVVGKL---------------------- 747
                + M+ +L +     +DLS N+F G +PE +  L                      
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 748 -----NSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXX 802
                N+L+ L   +N  TG IP +L N ++L SL LS N ++G IP  L          
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 803 XXXXXXXGPIPQ 814
                  G IPQ
Sbjct: 449 LWLNMLEGEIPQ 460

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 418 SSFPYLSMLSLSSCN--ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHL 475
           ++ PYL+ L +   N  +   P  +    +L  L ++   + G IP+++  +   TL  L
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTL 130
Query: 476 NLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNM 535
           + S+N L+G                 +L  SI  LP +L  I+   N++SG IP S+ + 
Sbjct: 131 DFSYNALSG-----------------TLPPSISSLP-NLVGITFDGNRISGAIPDSYGSF 172
Query: 536 SSIFY-VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQ 594
           S +F  + +S N L G IPP  AN +L F+D+  N   G     F        ++L  N 
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 595 LE---GSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPI 647
           L    G V LS      L  LD+ NNRI GT P  L  L  L  L +  N   G I
Sbjct: 233 LAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 123/313 (39%), Gaps = 74/313 (23%)
Query: 528 IPLSFCNMSSIFYVNLSN-NSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRL 585
           IP S  N+  + ++ +   N+L G IPP +A  + L +L +   N  G+IP   S+   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL-QVLILRSNRFH 644
             L+ + N L G++P S+ +   L  +    NRI+G  P   G+ S+L   + +  NR  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNE 704
           G I  +        L  +DLS N   G           +++ G++ + +           
Sbjct: 188 GKIPPTFANL---NLAFVDLSRNMLEGD---------ASVLFGSDKNTQ----------- 224
Query: 705 YYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLI 764
                                   I L+ N     + + VG   +L GL+  +N++ G +
Sbjct: 225 -----------------------KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260
Query: 765 PYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSD 824
           P  L  L  L SL++S N + GE                        IPQG     F   
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGE------------------------IPQGGNLQRFDVS 296
Query: 825 SYNGNMGLCGFPL 837
           +Y  N  LCG PL
Sbjct: 297 AYANNKCLCGSPL 309

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 192 QGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY-GCNFMGSIPASL-GN 249
             S+P  I   P    ++  ++  +T + P V + S +   +LY G N +G++P  +  +
Sbjct: 31  HASVPAGI---PTNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDS 86
Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNN 309
           L+QLT LDL  N  +    +    L  L+ L +  NK T ++P     LT L+ L    N
Sbjct: 87  LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 310 QLNGPISSSVSRLHSLVTIYLSYN 333
           QL      +  RL SL   YL  N
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC-IFANLT 299
            S+PA +   +Q+ YL    N  +   P    +L  L+ L L +N+  G +P  +F +LT
Sbjct: 32  ASVPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
           QL+ LD   NQL    S+   RL  L  +++  N L   +P G+     L  + L  NQL
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 174/417 (41%), Gaps = 87/417 (20%)
Query: 423 LSMLSLSSCNISEF-PDFLRTQHRLQILDLSDNQIRGGIPNWI-WNVGKDTLNHLNLSHN 480
           L  L LSS  + EF P   +T  +L  L L++ Q+   +   + W +   ++ +L+L++N
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 481 FLTGIEL-----LPWKNLRYLDLRSNSLK----GSIPFLPPSLNFISVSNNKLSGEIPLS 531
            L          L W NL  LDL  N+L     GS  +LP SL ++S+  N +    P S
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP-SLRYLSLEYNNIQRLSPRS 291
Query: 532 FCNMSSIFYVNL----SNNSLNGMIPPCLANSS------LWFLDMRMNNFHGSIPQTFSK 581
           F  +S++ Y++L    +  S++    P + + S      L +L+M  NN   +   TF+ 
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG 351
Query: 582 GSRLTILNLND-----NQLEGSVPLSLVNCSFLEVLDVGNNRI----NGTFPAWLGALSE 632
              L  L+L+        L     +SL +   L  L++  N I    NGTF +WLG    
Sbjct: 352 LVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL-TLNLTKNHISKIANGTF-SWLG---- 405
Query: 633 LQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA 692
                                    +LRILDL  NE    L  + ++  + +        
Sbjct: 406 -------------------------QLRILDLGLNEIEQKLSGQEWRGLRNIFE----IY 436
Query: 693 EGGNMYINYGNEYYSAILTVKGVNMEMEKVLNI------------FTTIDLSGNKFQGRI 740
              N Y+      ++ + +++ + +    + N+             T +DLS N      
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANIN 496
Query: 741 PEVVGKLNSLKGLNFSHNKLTGLIPYS--------LENLTQLESLDLSSNKVAGEIP 789
            +++  L +L+ L+F HN L  L   +        L+ L+ L  L+L SN +  EIP
Sbjct: 497 EDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIP 552

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
           +DL          A+   L++LT+L+L YN           +L +L  L L+NN+     
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LE 350
             +F +LTQL  L    NQL    S    RL  L  + L+ N L  +IP+G F     L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158
Query: 351 SIDLRNNQL 359
           ++ L  NQL
Sbjct: 159 TLSLSTNQL 167

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
           +DL          A+   L++LT+L+L YN           +L +L  L L+NN+     
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LE 350
             +F +LTQL  L    NQL    S    RL  L  + L+ N L  +IP+G F     L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158
Query: 351 SIDLRNNQL 359
           ++ L  NQL
Sbjct: 159 TLSLSTNQL 167

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 209 ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP 268
           I++ N ++ SV   + +   +R++ L G N +  I A L  L+ LTYL L+ N       
Sbjct: 46  IIANNSDIKSV-QGIQYLPNVRYLAL-GGNKLHDISA-LKELTNLTYLILTGNQLQSLPN 102
Query: 269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTI 328
                L  L+ L L  N+       +F  LT L++L+ ++NQL         +L +L  +
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 329 YLSYNSLNGTIPSGLFTS-PLLESIDLRNNQL 359
            LSYN L  ++P G+F     L+ + L  NQL
Sbjct: 163 DLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX Length = 487

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSL 503
           R+Q LDL  N+I   +         DTL HLNL +NF+  ++  + +  L+ LDL SN L
Sbjct: 145 RVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203
Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
                F+ P                   F + + + +++L NN L  +      + +L  
Sbjct: 204 ----AFMGP------------------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 564 LDMRMNNFH-GSIPQTFSKGSRL------TILNLN-DNQLEGSVP 600
            D+R N FH G++   FSK  R+      T+  L   N+ E +VP
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NNQL    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NNQL    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSL 503
           R+Q LDL  N+I   +         DTL HLNL +NF+  ++  + +  L+ LDL SN L
Sbjct: 145 RVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203
Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
                F+ P                   F + + + +++L NN L  +      + +L  
Sbjct: 204 ----AFMGP------------------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 564 LDMRMNNFH-GSIPQTFSKGSRL------TILNLN-DNQLEGSVP 600
            D+R N FH G++   FSK  R+      T+  L   N+ E +VP
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 236 GCNFMGSIPASLGN-LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294
           G N + S+P  + N L+ LTYL+LS N            L QL+ L L+ N+       +
Sbjct: 60  GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV 119
Query: 295 FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
           F  LTQL  L    NQL         RL SL  I+L  N  + T P
Sbjct: 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNN 357
             +L  L  +NNQL    +  ++ L +L T+ L  NSL  TIP G F S LL    L  N
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNN 357
             +L  L  +NNQL    +  ++ L +L T+ L  NSL  TIP G F S LL    L  N
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 47  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 95  LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 148 SNLTNLEHLDLSSNKI 163

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 46  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 147 SNLTNLEHLDLSSNKI 162

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 46  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 147 SNLTNLEHLDLSSNKI 162

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 194 SIPENIFR-LPNLQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASL-G 248
           ++P  IF+ L NL+ L ++ NK       VF ++   + LR       N + S+P  +  
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR----NQLKSLPPRVFD 130
Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
           +L++LTYL L YN            L  L+ L L NN+        F  LT+L  L   N
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
           NQL      +   L  L  + L  N  + T
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 45  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 146 SNLTNLEHLDLSSNKI 161

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHI-PSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
           + S+P  +   +Q+ YL   Y+N    + P     L QL  LDL NN+ T     +F  L
Sbjct: 21  LASVPTGIPTTTQVLYL---YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
           TQL+ L  ++NQL      +   L SL  I+L
Sbjct: 78  TQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNN-FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
           + S+P  +   +Q+ YL   Y+N  +   P     L QL  LDL NN+ T     +F  L
Sbjct: 29  LASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 85
Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
           TQL+ L  ++NQL      +   L SL  I+L
Sbjct: 86  TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
           L  ++ SNN+ T + P +       ++  NN  A+   +  N  N     +   +  +++
Sbjct: 65  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
             K L     ++LS N     I  + G L SL+ LNFS N++T L P  L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLD 179
Query: 779 LSSNKVA 785
           +SSNKV+
Sbjct: 180 ISSNKVS 186

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNN-FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
           + S+P  +   +Q+ YL   Y+N  +   P     L QL  LDL NN+ T     +F  L
Sbjct: 21  LASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
           TQL+ L  ++NQL      +   L SL  I+L
Sbjct: 78  TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 47  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 95  LGAFSGLSSLQKLVALETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 148 SNLTNLEHLDLSSNKI 163

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 69  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 169
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 170 SNLTNLEHLDLSSNKI 185

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 45  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 146 SNLTNLEHLDLSSNKI 161

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
           S + F FP+L++LDLS  E             Q +  G   S    +  I  GN   S  
Sbjct: 45  SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
           L        ++K++ + T +    N      P  +G L +LK LN +HN +    +P   
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 769 ENLTQLESLDLSSNKV 784
            NLT LE LDLSSNK+
Sbjct: 146 SNLTNLEHLDLSSNKI 161

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NN L    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 147 TPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 548 LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG--SVPLSLVN 605
           ++ + PP  + SS  FL+   N F  S+ Q  S   RL  L L  N L+    V L   N
Sbjct: 344 IHMVCPP--SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401
Query: 606 CSFLEVLDVGNNRINGTFPAWLGALSE-LQVLILRSNRFHGPITYSVTRFPFPKLRILDL 664
            S LE LDV  N +N        A +E + VL L SN   G    SV R   PK+++LDL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG----SVFRCLPPKVKVLDL 457
Query: 665 SNNEFTGV 672
            NN    +
Sbjct: 458 HNNRIMSI 465

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NN L    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NN L    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NN L    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 88  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 147
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NN L    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 148 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 198

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 201 RLPNLQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASL-GNLSQLTYL 256
            L NL  LIL+ N+  +    VF K+     L  ++    N + S+P  +   L+ LTYL
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYL 138
Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPIS 316
            L +N            L  L  LDL NN+       +F  LTQL  L  ++NQL     
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 317 SSVSRLHSLVTIYL 330
               RL SL  I+L
Sbjct: 199 GVFDRLTSLTHIWL 212

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
           N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+     P +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             +L  L  +NN L    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
           L  ++ SNN+ T + P +       ++  NN  A+   +  N  N     +   +  +++
Sbjct: 65  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
             K L     ++LS N     I  + G L SL+ L+FS N++T L P  L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 779 LSSNKVA 785
           +SSNKV+
Sbjct: 180 ISSNKVS 186

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
           L  ++ SNN+ T + P +       ++  NN  A+   +  N  N     +   +  +++
Sbjct: 65  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
             K L     ++LS N     I  + G L SL+ L+FS N++T L P  L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 779 LSSNKVA 785
           +SSNKV+
Sbjct: 180 ISSNKVS 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	920
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-114
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-80
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-90
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-83
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-81
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-76
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-60
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-43
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-33
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-32
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-24
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-20
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  594 bits (1534), Expect = 0.0
 Identities = 230/827 (27%), Positives = 333/827 (40%), Gaps = 118/827 (14%)

Query: 32  SWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDS-SLFSLPHLQILNLAFNDF 90
            W   K+ C++DGVTC      VT +DLS   L+    + S SL SL  L+ L L+ +  
Sbjct: 32  DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 89

Query: 91  NYSYISPGFTRFPNLAHLNLSVSSFSGQIPA--EISHLSKLVSLDLSGNSQLGLDTPVLK 148
           N S    GF    +L  L+LS +S SG +     +   S L  L++S N+          
Sbjct: 90  NGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV--- 144

Query: 149 ALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNL 208
                                   S    L+SL  LDL    + G+             L
Sbjct: 145 ------------------------SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 209 ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP 268
                                + + + G    G +   +     L +LD+S NNFS  IP
Sbjct: 181 ---------------------KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217

Query: 269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTI 328
             L +   L+HLD+S NK +G      +  T+L  L+ S+NQ  GPI      L SL  +
Sbjct: 218 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274

Query: 329 YLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNV 387
            L+ N   G IP  L  +   L  +DL  N   G++         L  L+LSSNN SG +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 388 ELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQ 447
            +    +++ L  LDLS N  S           P     SL++ + S           L 
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFS--------GELP----ESLTNLSAS-----------LL 371

Query: 448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI---ELLPWKNLRYLDLRSNSLK 504
            LDLS N   G I   +    K+TL  L L +N  TG     L     L  L L  N L 
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

Query: 505 GSIP---FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SS 560
           G+IP        L  + +  N L GEIP     + ++  + L  N L G IP  L+N ++
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
           L ++ +  N   G IP+   +   L IL L++N   G++P  L +C  L  LD+  N  N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 621 GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ- 679
           GT PA +   S      + +N   G     +      K      +  EF G+   +  + 
Sbjct: 552 GTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 680 -NFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG 738
                    +                         G              +D+S N   G
Sbjct: 608 STRNPCNITSRV---------------------YGGHTSPTFDNNGSMMFLDMSYNMLSG 646

Query: 739 RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFL 798
            IP+ +G +  L  LN  HN ++G IP  + +L  L  LDLSSNK+ G IP  +++L  L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

Query: 799 QVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDE 845
             ++LS N L GPIP+  QF TF    +  N GLCG+PL     ++ 
Sbjct: 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  365 bits (939), Expect = e-114
 Identities = 142/693 (20%), Positives = 249/693 (35%), Gaps = 75/693 (10%)

Query: 180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF 239
           S    D  +  L   +P+++    N+  L L++N                          
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHN------------------------QL 37

Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
                A+    SQLT LD+ +N  S   P     L  L+ L+L +N+ +      FA  T
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
            L+ L   +N +    ++   +  +L+T+ LS+N L+ T          L+ + L NN++
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 360 TGSISNSISELVN--LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS--LSTLLP 415
               S  +    N  L  L LSSN +        F  +  L GL L++  L   L+  L 
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 416 VNSSFPYLSMLSLSSCNISEFPD---FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTL 472
           +  +   +  LSLS+  +S   +          L +LDLS N +     +    + +  L
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ--L 274

Query: 473 NHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIPFLP------------PSLNFI 517
            +  L +N +  +    L    N+RYL+L+ +  K SI                  L  +
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 518 SVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP-----CLANSSLWFLDMRMNNFH 572
           ++ +N + G     F  + ++ Y++LSN+  +           LA+S L  L++  N   
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLS-LVNCSFLEVLDVGNNRINGTFPAWLGALS 631
                 FS    L +L+L  N++   +          +  + +  N+           + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 632 ELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNS 691
            LQ L+LR        +      P   L ILDLSNN     +     +  + +       
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEI----- 508

Query: 692 AEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK 751
                + + + N          G  +   K L+    ++L  N F     EV   L  LK
Sbjct: 509 -----LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQL-TSLNFLQVLNLSQNQLVG 810
            ++   N L  L      N   L+SL+L  N +          +   L  L++  N    
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 811 PIPQGKQFHTFSSDSYNGNMGL-----CGFPLS 838
                  F  + ++++     L     C  P  
Sbjct: 624 TCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  317 bits (814), Expect = 2e-96
 Identities = 147/659 (22%), Positives = 248/659 (37%), Gaps = 80/659 (12%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLS 111
           ++T L+L+ ++L     +  +      L  L++ FN    S + P    + P L  LNL 
Sbjct: 26  NITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQ 81

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
            +  S       +  + L  L L  NS   +                             
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIK---------------------------- 113

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNK--NLTSVFPKVNWSSPL 229
            +      +L +LDL + GL  +      +L NLQ L+LS NK   L S    +  +S L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS---NLQQLRHLDLSNNK 286
           + ++L         P     + +L  L L+       +   L        +R+L LSN++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 287 FTGQIPCIFANL--TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
            +      F  L  T L+ LD S N LN   + S + L  L   +L YN++       L 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 345 TSPLLESIDLRNNQLTGSIS---------NSISELVNLIDLSLSSNNLSGNVELYMFAEL 395
               +  ++L+ +    SIS          S   L  L  L++  N++ G ++  MF  L
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGL 352

Query: 396 KNLLGLDLSHNSLSLSTLLP---VNSSFPYLSMLSLSSCNISEF-PDFLRTQHRLQILDL 451
            NL  L LS++  SL TL     V+ +   L +L+L+   IS+   D       L++LDL
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 452 SDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIP 508
             N+I   +    W  G + +  + LS+N    +         +L+ L LR  +LK    
Sbjct: 413 GLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 509 FLP-----PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
                    +L  + +SNN ++         +  +  ++L +N+L  +            
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK---------- 521

Query: 564 LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTF 623
                +   G         S L ILNL  N  +        +   L+++D+G N +N   
Sbjct: 522 -----HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 624 PAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPT-RYFQNF 681
            +       L+ L L+ N         V    F  L  LD+  N F     +  +F N+
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  255 bits (654), Expect = 7e-74
 Identities = 111/552 (20%), Positives = 196/552 (35%), Gaps = 50/552 (9%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISP-GFTRFPNLAHLNLSVSSF 115
           LDLS + L  +     +   L +LQ L L+ N                +L  L LS +  
Sbjct: 126 LDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 116 SGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFL 175
               P     + +L  L L+   QLG        L      ++ L L++  +S    +  
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 176 TNL--SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKV---------- 223
             L  ++LT LDL    L     ++   LP L+   L YN N+  +F             
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYL 301

Query: 224 NWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLS 283
           N         +   +       S   L  L +L++  N+  G   +  + L  L++L LS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 284 NNKFTGQIPC--IFANL--TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339
           N+  + +      F +L  + L  L+ + N+++   S + S L  L  + L  N +   +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 340 PSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYM-FAELKN 397
               +     +  I L  N+      NS + + +L  L L    L         F  L+N
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 398 LLGLDLSHNSLSLSTLLPVN-SSFPYLSMLSLSSCNISEF---------PDFLRTQHRLQ 447
           L  LDLS+N  +++ +          L +L L   N++             FL+    L 
Sbjct: 482 LTILDLSNN--NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLK 504
           IL+L  N           ++ +  L  ++L  N L  +         +L+ L+L+ N + 
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFE--LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 505 GSIP----FLPPSLNFISVSNNKLSGEIP-----LSFCNMSSIFYVNLSNNSLNGMIPPC 555
                       +L  + +  N            +++ N +      LS++ L    PP 
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT-PPH 656

Query: 556 LANSSLWFLDMR 567
                +   D  
Sbjct: 657 YHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (556), Expect = 2e-60
 Identities = 93/497 (18%), Positives = 164/497 (32%), Gaps = 80/497 (16%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
            +  L LS S+L  +  +        +L +L+L++N+ N    +  F   P L +  L  
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEY 281

Query: 113 SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
           ++        +  L  +  L+L  +                     +  ++   +     
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRS-------------------FTKQSISLASLPKIDD 322

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232
                L  L  L++ +  + G        L NL+ L LS +                   
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF--------------TSLR 368

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
            L    F+          S L  L+L+ N  S       S L  L  LDL  N+   ++ 
Sbjct: 369 TLTNETFVSL------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 293 -CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNG--TIPSGLFTSPLL 349
              +  L  +  +  S N+      +S + + SL  + L   +L    + PS       L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLS-------GNVELYMFAELKNLLGLD 402
             +DL NN +     + +  L  L  L L  NNL+           +Y    L +L  L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 403 LSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPN 462
           L  N                               +  +    L+I+DL  N +     +
Sbjct: 543 LESNGFD------------------------EIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 463 WIWNVGKDTLNHLNLSHNFLTGIE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFIS 518
              N     L  LNL  N +T +E       ++NL  LD+R N    +   +   +N+I+
Sbjct: 579 VFNNQVS--LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

Query: 519 VSNNKLSGEIPLSFCNM 535
            ++  +        CN 
Sbjct: 637 ETHTNIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  188 bits (479), Expect = 2e-50
 Identities = 87/465 (18%), Positives = 165/465 (35%), Gaps = 64/465 (13%)

Query: 371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN-SSFPYLSMLSLS 429
           V+      S   L+  V   +   +     L+L+HN   L  L   N + +  L+ L + 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLPTNITV---LNLTHN--QLRRLPAANFTRYSQLTSLDVG 57

Query: 430 SCNISEF-PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-- 486
              IS+  P+  +    L++L+L  N++               L  L+L  N +  I+  
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN--LTELHLMSNSIQKIKNN 115

Query: 487 -LLPWKNLRYLDLRSNSLKGSIPFLP---PSLNFISVSNNKLSGEIP--LSFCNMSSIFY 540
             +  KNL  LDL  N L  +         +L  + +SNNK+       L     SS+  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 541 VNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKG---SRLTILNLNDNQLE 596
           + LS+N +    P C      L+ L +       S+ +        + +  L+L+++QL 
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 597 GSVPLSLVNCSF--LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRF 654
            +   + +   +  L +LD+  N +N         L +L+   L  N      ++S+   
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-- 293

Query: 655 PFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKG 714
               +R L+L  +     +                                         
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW-------------------------- 327

Query: 715 VNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKL--TGLIPYSLENL- 771
                   L     +++  N   G    +   L +LK L+ S++      L   +  +L 
Sbjct: 328 --------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 772 -TQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
            + L  L+L+ NK++       + L  L+VL+L  N++   +   
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  151 bits (384), Expect = 3e-38
 Identities = 61/331 (18%), Positives = 109/331 (32%), Gaps = 54/331 (16%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           L+L+ +++        +   L HL++L+L  N+         +    N+  + LS + + 
Sbjct: 386 LNLTKNKISKIESD--AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLT 176
                  + +  L  L L   +                       L +VD S   PS   
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVA-----------------------LKNVDSS---PSPFQ 477

Query: 177 NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYG 236
            L +LT LDL N  +     + +  L  L+ L L +N NL  ++                
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKH-------------- 522

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
               G     L  LS L  L+L  N F         +L +L+ +DL  N        +F 
Sbjct: 523 -ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 297 NLTQLSFLDFSNNQLNGPISSSVSR-LHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLR 355
           N   L  L+   N +             +L  + + +N  + T  S    +  +  I+  
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWINET 638

Query: 356 NNQLTGSISNSISEL------VNLIDLSLSS 380
           +  +    S+ +           +     SS
Sbjct: 639 HTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 669

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  301 bits (774), Expect = 3e-91
 Identities = 106/648 (16%), Positives = 201/648 (31%), Gaps = 99/648 (15%)

Query: 21  RLQSDSYSKMISWKEEKDCCSW---DGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSL 77
             Q        +W   K+   W    GV+ +   G VTGL L      G +P   ++  L
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQL 104

Query: 78  PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGN 137
             L++L L  +    +    G                        + +  +    DL  +
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 138 SQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPE 197
                                   +NS      +          T +   +  +   + +
Sbjct: 165 C-----------------------INSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSK 200

Query: 198 NIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLD 257
            + RL  L+   +  +      F   N        +        +      NL  LT ++
Sbjct: 201 AVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 258 LSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT--------GQIPCIFANLTQLSFLDFSNN 309
           +        +P+ L  L +++ ++++ N+           Q         ++  +    N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 310 QL-NGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSIS 368
            L   P+ +S+ ++  L  +   YN L G +P+   +   L S++L  NQ+T   +N   
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCG 374

Query: 369 ELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSL 428
               + +LS + N L     ++    +  +  +D S+N +                  S+
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-----------------SV 417

Query: 429 SSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI--- 485
              N             +  ++LS+NQI               L+ +NL  N LT I   
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP--LSSINLMGNMLTEIPKN 475

Query: 486 -------ELLPWKNLRYLDLRSNSLKGSIPFLP----PSLNFISVSNNKLSGEIPLSFCN 534
                         L  +DLR N L            P L  I +S N  S   P    N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 535 MSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQ 594
            S++    + N                   D + N      P+  +    LT L +  N 
Sbjct: 535 SSTLKGFGIRNQ-----------------RDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 595 LEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
           +   V   +     + VLD+ +N       +++    E  + +L  ++
Sbjct: 578 IR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  272 bits (698), Expect = 2e-80
 Identities = 92/651 (14%), Positives = 185/651 (28%), Gaps = 121/651 (18%)

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           L +   +T L L   G  G +P+ I +L  L+ L L  +                     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK------------------ 118

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ--QLRHLDLSNNKFTGQIP 292
              N     P  +              ++               L    ++++     I 
Sbjct: 119 --VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

Query: 293 CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESI 352
                  + + +   +N +   +S +V RL  L   Y+  +                E+ 
Sbjct: 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC-----EAWENE 230

Query: 353 DLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLST 412
           +    Q   +       L +L D+ + +      +       L  +  ++++ N     +
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGI--S 287

Query: 413 LLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGG-IPNWIWNVGKDT 471
              +   +  L+   +                 +QI+ +  N ++   +   +  + K  
Sbjct: 288 GEQLKDDWQALADAPVGEK--------------IQIIYIGYNNLKTFPVETSLQKMKK-- 331

Query: 472 LNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKG---SIPFLPPSLNFISVSNNKLSG 526
           L  L   +N L G          L  L+L  N +     +       +  +S ++NKL  
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK- 390

Query: 527 EIP--LSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
            IP      ++S +  ++ S N +  +                       +  T  KG  
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDG----------------KNFDPLDPTPFKGIN 434

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRING-------TFPAWLGALSELQVLI 637
           ++ +NL++NQ+           S L  +++  N +                    L  + 
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 638 LRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM 697
           LR N+    ++        P L  +DLS N F+   PT+                     
Sbjct: 495 LRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL------------------- 533

Query: 698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH 757
                             N    K   I    D  GN+     PE +    SL  L    
Sbjct: 534 ------------------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 758 NKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           N +  +     +    +  LD+  N         +       +  L  ++ 
Sbjct: 576 NDIRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  264 bits (678), Expect = 1e-77
 Identities = 74/566 (13%), Positives = 178/566 (31%), Gaps = 82/566 (14%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
                     +            L    +  +      I            +    ++ +
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSD-PQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLT 176
             +   +  L+KL    +  +  +  +              +                  
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEA----WENENSEYAQQYKT-----EDLKWD 246

Query: 177 NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP-------- 228
           NL  LT +++ NC     +P  +  LP +Q + ++ N+ ++    K +W +         
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 229 LRFMDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF 287
           ++ + +   N     +  SL  + +L  L+  YN   G +P+   +  +L  L+L+ N+ 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365

Query: 288 TGQIPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS 346
           T           Q+  L F++N+L   P       +  +  I  SYN +           
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--- 422

Query: 347 PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
                           +  +  + +N+  ++LS+N +S   +  +F+    L  ++L  N
Sbjct: 423 --------------DPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGN 467

Query: 407 SLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
            L+                  +   ++ +  +  +  + L  +DL  N++   + +    
Sbjct: 468 MLT-----------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRA 509

Query: 467 VGKDTLNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKL 524
                L  ++LS+N  +    + L    L+   +R+                     N+ 
Sbjct: 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ---------------RDAQGNRT 554

Query: 525 SGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
             E P       S+  + + +N +   +   +   ++  LD++ N               
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT-PNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLE 610
             +  L  ++ +      +  C  L+
Sbjct: 613 AGMYMLFYDKTQ-----DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  249 bits (637), Expect = 5e-72
 Identities = 81/595 (13%), Positives = 166/595 (27%), Gaps = 106/595 (17%)

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ----IP 292
             +      SL +  ++T L L     SG +P  +  L +L  L L ++          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 293 CIFANLTQLSFLDFSNNQLNGPISSSVSRLH--SLVTIYLSYNSLNGTIPSGLFTSPLLE 350
              +                        R     L+   ++ +    +I      +    
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
            I   +N +T  +S ++  L  L    + ++            E       + +    + 
Sbjct: 187 QIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENIC----EAWENENSEYAQQYKTE 241

Query: 411 STLLPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK 469
                   +   L+ + + +C    + P FL+    +Q+++++ N+   G          
Sbjct: 242 DLKW---DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ-------- 290

Query: 470 DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP 529
                L      L    +   + ++ + +  N+LK                    +  + 
Sbjct: 291 -----LKDDWQALADAPVG--EKIQIIYIGYNNLK--------------------TFPVE 323

Query: 530 LSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
            S   M  +  +    N L G   P   +   L  L++  N              ++  L
Sbjct: 324 TSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382

Query: 589 NLNDNQLEG-SVPLSLVNCSFLEVLDVGNNRING-------TFPAWLGALSELQVLILRS 640
           +   N+L+         + S +  +D   N I                    +  + L +
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYIN 700
           N+         +      L  ++L  N  T  +P    ++                    
Sbjct: 443 NQISKFPKELFSTGS--PLSSINLMGNMLTE-IPKNSLKDENENFKNTYL---------- 489

Query: 701 YGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEV-VGKLNSLKGLNFSHNK 759
                                     T+IDL  NK      +     L  L G++ S+N 
Sbjct: 490 -------------------------LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 760 LTGLIPYSLENLTQLESL------DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
            +   P    N + L+        D   N+   E P  +T    L  L +  N +
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  215 bits (549), Expect = 7e-60
 Identities = 78/526 (14%), Positives = 164/526 (31%), Gaps = 65/526 (12%)

Query: 307 SNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNS 366
           + N  N       ++  +        +         L ++  +  + L     +G + ++
Sbjct: 41  ALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA 100

Query: 367 ISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSML 426
           I +L  L  L+L S+    N  L+    +   +  +               +   Y    
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ----KTFVDYDPRE 156

Query: 427 SLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI- 485
             S                L    ++ +  +  I        K     +    N +T + 
Sbjct: 157 DFSD---------------LIKDCINSDPQQKSIKKSSRITLK--DTQIGQLSNNITFVS 199

Query: 486 -ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLS 544
             ++    LR   + ++           +    +    +      L + N+  +  V + 
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 545 NNSLNGMIPPCLAN-SSLWFLDMRMNNFH--------GSIPQTFSKGSRLTILNLNDNQL 595
           N      +P  L     +  +++  N                    G ++ I+ +  N L
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 596 -EGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRF 654
               V  SL     L +L+   N++ G  PA  G+  +L  L L  N+            
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGF- 375

Query: 655 PFPKLRILDLSNNEFTGVLPTRYFQNFQAM----MHGNNNSAEGGNMYINYGNEYYSAIL 710
              ++  L  ++N+   +      ++   M       N   +  G  +            
Sbjct: 376 -TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT------ 428

Query: 711 TVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL------- 763
             KG+N+         ++I+LS N+      E+    + L  +N   N LT +       
Sbjct: 429 PFKGINV---------SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 764 IPYSLENLTQLESLDLSSNKVAGEIP-WQLTSLNFLQVLNLSQNQL 808
              + +N   L S+DL  NK+      ++ T+L +L  ++LS N  
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (260), Expect = 5e-23
 Identities = 45/263 (17%), Positives = 92/263 (34%), Gaps = 27/263 (10%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDF------NYSYISPGFTRFPNLAHLNL 110
           L  + ++L   IP+     S+  +  ++ ++N+       N+  + P   +  N++ +NL
Sbjct: 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 111 SVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY- 169
           S +  S       S  S L S++L GN    +    LK   +N      L   S+D+ + 
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT--SIDLRFN 498

Query: 170 ---EVPS--FLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNK-----NLTSV 219
              ++      T L  L  +DL         P        L+   +   +          
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 220 FPKV--NWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
           +P+      S L  + + G N +  +   +     ++ LD+  N       S +    + 
Sbjct: 558 WPEGITLCPS-LTQLQI-GSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 278 RHLDLSNNKFTGQIPCIFANLTQ 300
               L  +K      C   ++ +
Sbjct: 614 GMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 5e-21
 Identities = 36/292 (12%), Positives = 90/292 (30%), Gaps = 32/292 (10%)

Query: 542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
           N  N S  G      AN   W  +  ++ +      + +   R+T L+L      G VP 
Sbjct: 43  NGKNWSQQGFGTQPGAN---WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD 99

Query: 602 SLVNCSFLEVLDVGNNRING----TFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP 657
           ++   + LEVL +G++          P  + A    +        +         R  F 
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 658 KLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNM 717
            L    ++++     +                  +    +      +  + I     V+ 
Sbjct: 160 DLIKDCINSDPQQKSIK----------------KSSRITLKDTQIGQLSNNI---TFVSK 200

Query: 718 EMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777
            + ++  +     +  + F         +  +       + +         +NL  L  +
Sbjct: 201 AVMRLTKL-RQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDV 254

Query: 778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGN 829
           ++ +     ++P  L +L  +Q++N++ N+ +        +   +       
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 6e-08
 Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 7/117 (5%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG----LIPYSLENLTQLESLDLSSN 782
           T + L G    GR+P+ +G+L  L+ L    +          P  +      E       
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 783 KVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSE 839
                        +F    +L ++ +     Q     +      +  +G     ++ 
Sbjct: 144 HYQKTFVDYDPREDFS---DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  298 bits (766), Expect = 2e-90
 Identities = 121/549 (22%), Positives = 202/549 (36%), Gaps = 35/549 (6%)

Query: 157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNL 216
            + L L+   + +       +   L  LDL  C +Q         L +L  LIL+ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 217 TSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF-SGHIPSTLSNLQ 275
           +      +  S L+ +     N        +G+L  L  L++++N   S  +P   SNL 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSF----LDFSNNQLNGPISSSVSRLHSLVTIYLS 331
            L HLDLS+NK           L Q+      LD S N +N     +   +  L  + L 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208

Query: 332 YNSLNGTIPSGLFTS-PLLESIDLRNNQLTGS------ISNSISELVNLI--DLSLSSNN 382
            N  +  +          LE   L   +            +++  L NL   +  L+  +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRT 442
              +  + +F  L N+    L   ++        N        L L +C   +FP     
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG---WQHLELVNCKFGQFPTL--K 323

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-----KNLRYLD 497
              L+ L  + N+      N    V   +L  L+LS N L+             +L+YLD
Sbjct: 324 LKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 498 LRSNSLKGSIPFL--PPSLNFISVSNNKLSGEIPLS-FCNMSSIFYVNLSNNSLNGMIPP 554
           L  N +            L  +   ++ L      S F ++ ++ Y+++S+         
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 555 CLAN-SSLWFLDMRMNNFHGSI-PQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVL 612
                SSL  L M  N+F  +  P  F++   LT L+L+  QLE   P +  + S L+VL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 613 DVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV 672
           ++ +N            L+ LQVL    N         +  FP   L  L+L+ N+F   
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFACT 558

Query: 673 LPTRYFQNF 681
              + F  +
Sbjct: 559 CEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  280 bits (718), Expect = 1e-83
 Identities = 127/652 (19%), Positives = 207/652 (31%), Gaps = 121/652 (18%)

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP-LRFMDLYGCNFM 240
            +           IP+N+    + +NL LS+N  L  +     +S P L+ +DL  C   
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
                +  +LS L+ L L+ N          S L  L+ L                +L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 301 LSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLF----TSPLLESIDLR 355
           L  L+ ++N +    +    S L +L  + LS N +     + L        L  S+DL 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 356 NNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP 415
            N +      +  E+  L  L+L +N  S NV       L  L    L          L 
Sbjct: 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 416 V--NSSFPYLSMLSLSSCNIS-------EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
               S+   L  L++    ++       +  D       +    L    I   + ++ +N
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN 303

Query: 467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLS 525
            G     HL L +        L  K+L+ L   SN    +   +  PSL F+ +S N LS
Sbjct: 304 FG---WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 526 --GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGS 583
             G    S    +S+ Y++LS N +                          +   F    
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT------------------------MSSNFLGLE 396

Query: 584 RLTILNLNDNQLEGSVPLS-LVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
           +L  L+   + L+     S  ++   L  LD+ +      F      L            
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL------------ 444

Query: 643 FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
                           L +L ++ N F        F   + +                  
Sbjct: 445 --------------SSLEVLKMAGNSFQENFLPDIFTELRNL------------------ 472

Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
                                   T +DLS  + +   P     L+SL+ LN SHN    
Sbjct: 473 ------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 763 LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQLVGPIP 813
           L  +  + L  L+ LD S N +      +L    + L  LNL+QN       
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  273 bits (700), Expect = 4e-81
 Identities = 109/624 (17%), Positives = 207/624 (33%), Gaps = 76/624 (12%)

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
             N   +    N     + +DL           S  +  +L  LDLS             
Sbjct: 16  ELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332
           +L  L  L L+ N         F+ L+ L  L      L    +  +  L +L  + +++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 333 NSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNL----IDLSLSSNNLSGNV 387
           N +        F++   LE +DL +N++       +  L  +    + L LS N ++  +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-I 192

Query: 388 ELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEF-------PDFL 440
           +   F E+  L  L L +N  SL+ +         L +  L                  L
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 441 RTQHRLQILDLSDNQI---RGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-KNLRYL 496
                L I +     +      I +    +    ++  +L    +  ++   +    ++L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 497 DLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN--GMIPP 554
           +L +            SL  ++ ++NK       S  ++ S+ +++LS N L+  G    
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 555 CLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLS-LVNCSFLEVL 612
                +SL +LD+  N     +   F    +L  L+   + L+     S  ++   L  L
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 613 DVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV 672
           D+ +      F      LS L+VL +  N F       +       L  LDLS  +   +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQL 485

Query: 673 LPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLS 732
            P   F +  ++                                            +++S
Sbjct: 486 SP-TAFNSLSSL------------------------------------------QVLNMS 502

Query: 733 GNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL-TQLESLDLSSNKVAGEIP-- 789
            N F          LNSL+ L++S N +       L++  + L  L+L+ N  A      
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

Query: 790 WQLTSLNFLQVLNLSQNQLVGPIP 813
             L  +   + L +   ++    P
Sbjct: 563 SFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  229 bits (587), Expect = 3e-65
 Identities = 109/528 (20%), Positives = 186/528 (35%), Gaps = 51/528 (9%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           L    + L         +  L  L+ LN+A N      +   F+   NL HL+LS +   
Sbjct: 105 LVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 117 GQIPAEISHLSKL----VSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
                ++  L ++    +SLDLS N    +     K +      L +L L +   S  V 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNVM 217

Query: 173 S-FLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRF 231
              +  L+ L    L     +       F    L+ L     +              L +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-----------LAY 266

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
           +D     ++  I      L+ ++   L             S     +HL+L N KF    
Sbjct: 267 LDY----YLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFP 320

Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN--GTIPSGLFTSPLL 349
                +L +   L F++N+     S     L SL  + LS N L+  G      F +  L
Sbjct: 321 TLKLKSLKR---LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409
           + +DL  N +   +S++   L  L  L    +NL    E  +F  L+NL+ LD+SH    
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 410 LSTLLPVNSSFPYLSMLSLSSCNISEF--PDFLRTQHRLQILDLSDNQIRGGIPNWIWNV 467
                 + +    L +L ++  +  E   PD       L  LDLS  Q+    P    ++
Sbjct: 435 -VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 468 GKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIP----FLPPSLNFISVS 520
               L  LN+SHN    ++        +L+ LD   N +  S        P SL F++++
Sbjct: 494 SS--LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 521 NNKLSGEIPLS--FCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDM 566
            N  +           +     + +    +    P       +  L++
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  185 bits (471), Expect = 9e-50
 Identities = 98/506 (19%), Positives = 160/506 (31%), Gaps = 93/506 (18%)

Query: 326 VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSG 385
           +T      +    IP  L  S   +++DL  N L    S S      L  L LS   +  
Sbjct: 10  ITYQCMELNFY-KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 386 NVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHR 445
            +E   +  L +L  L L+ N +                         S           
Sbjct: 67  -IEDGAYQSLSHLSTLILTGNPIQ------------------------SLALGAFSGLSS 101

Query: 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW----KNLRYLDLRSN 501
           LQ L   +  +       I ++    L  LN++HN +   +L  +     NL +LDL SN
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKT--LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 502 SLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSL 561
            ++         L+ + + N  L                 +LS N +N + P       L
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSL-----------------DLSLNPMNFIQPGAFKEIRL 202

Query: 562 WFLDMRMNNFHGSIPQTFSKG-SRLTILNLNDNQLEGSVPL---------SLVNCSFLEV 611
             L +R N    ++ +T  +G + L +  L   +      L          L N +  E 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
                +            L+ +    L S        +S         + L+L N +F  
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVNCKFGQ 318

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL 731
             PT   ++ + +   +N                       KG N   E  L     +DL
Sbjct: 319 -FPTLKLKSLKRLTFTSN-----------------------KGGNAFSEVDLPSLEFLDL 354

Query: 732 SGNK--FQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
           S N   F+G   +      SLK L+ S N +   +  +   L QLE LD   + +     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 790 WQ-LTSLNFLQVLNLSQNQLVGPIPQ 814
           +    SL  L  L++S          
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (392), Expect = 2e-39
 Identities = 69/333 (20%), Positives = 123/333 (36%), Gaps = 21/333 (6%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
           +V+   L    +   +   S  F   HL+++N  F           F      +   L+ 
Sbjct: 283 NVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFG---------QFPTLKLKSLKRLTF 332

Query: 113 SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
           +S  G        L  L  LDLS N                   L+ L L+   +     
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKV-NWSSPLR 230
           +FL  L  L  LD  +  L+     ++F  L NL  L +S+  +    F  + N  S L 
Sbjct: 391 NFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLE 448

Query: 231 FMDLYGCNFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
            + + G +F  +  P     L  LT+LDLS        P+  ++L  L+ L++S+N F  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRL-HSLVTIYLSYNSLNGTIPSGLFTSPL 348
                +  L  L  LD+S N +       +     SL  + L+ N    T     F   +
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568

Query: 349 LES--IDLRNNQLTGSISNSISELVNLIDLSLS 379
            +   + +   ++  +  +    +  ++ L+++
Sbjct: 569 KDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.7 bits (249), Expect = 1e-21
 Identities = 49/267 (18%), Positives = 80/267 (29%), Gaps = 54/267 (20%)

Query: 554 PCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLD 613
           PC+             NF+  IP           L+L+ N L      S  +   L+VLD
Sbjct: 2   PCVEVVPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVL 673
           +    I         +LS L  LIL  N        + +      L+ L         + 
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLE 116

Query: 674 PTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSG 733
                 + + +                                            ++++ 
Sbjct: 117 NF-PIGHLKTL------------------------------------------KELNVAH 133

Query: 734 NKFQG-RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLE----SLDLSSNKVAGEI 788
           N  Q  ++PE    L +L+ L+ S NK+  +    L  L Q+     SLDLS N +    
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 789 PWQLTSLNFLQVLNLSQNQLVGPIPQG 815
           P     +  L  L L  N     + + 
Sbjct: 194 PGAFKEIR-LHKLTLRNNFDSLNVMKT 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  274 bits (703), Expect = 2e-81
 Identities = 117/610 (19%), Positives = 208/610 (34%), Gaps = 36/610 (5%)

Query: 51  TGHVTGLDLSCSRLH-GSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHL 108
                    +C  L    IP           + L  +FN      I    F+R  NL  L
Sbjct: 9   IEKEVNKTYNCENLGLNEIPGTLP----NSTECLEFSFNVL--PTIQNTTFSRLINLTFL 62

Query: 109 NLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMS 168
           +L+                +L +L L+ N  + +    L         L+ L      +S
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL----SGPKALKHLFFIQTGIS 118

Query: 169 YEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP 228
                 L N  +L SL LG+  +        F    L+ L    N  +  +  +   S  
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQ 177

Query: 229 -LRFMDLY-GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSN--LQQLRHLDLSN 284
               + L    N +  I     + +    L+         I   L N  +Q L      +
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 285 NKFTGQIPCIFANLTQLS--FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG 342
                  P +F  L ++S   ++   +      S++      L  + L+   L+  +PSG
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLD 402
           L     L+ + L  N+       S S   +L  LS+  N     +       L+NL  LD
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 403 LSHNSLSLSTLLPVN-SSFPYLSMLSLSSCNISEF-PDFLRTQHRLQILDLSDNQIRGGI 460
           LSH+ +  S    +   +  +L  L+LS         +  +   +L++LDL+  +++   
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 461 PNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIPFLP------ 511
               +      L  LNLSH+ L             L++L+L+ N                
Sbjct: 417 AQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNF 571
             L  + +S   LS     +F ++  + +V+LS+N L       L++    +L++  N+ 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535

Query: 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALS 631
              +P      S+   +NL  N L+ +         FLE       ++  T         
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNI----YFLEWYKENMQKLEDTEDTLCENPP 591

Query: 632 ELQVLILRSN 641
            L+ + L   
Sbjct: 592 LLRGVRLSDV 601

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  260 bits (667), Expect = 2e-76
 Identities = 113/648 (17%), Positives = 224/648 (34%), Gaps = 100/648 (15%)

Query: 183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGS 242
           + +  N GL   IP  +    + + L  S+N  L ++                       
Sbjct: 16  TYNCENLGLN-EIPGTLP--NSTECLEFSFN-VLPTI----------------------- 48

Query: 243 IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLS 302
              +   L  LT+LDL+          T  +  +L  L L+ N          +    L 
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 303 FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGS 362
            L F    ++      +    +L ++YL  N ++       F +  L+ +D +NN +   
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 363 ISNSISELVNL--IDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP-VNSS 419
               +S L     + L+L+ N+++G +E   F        L+       L       NS+
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 420 FPYLSMLSLSSCNISEFPDFL---RTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLN 476
              L + +    +  +    +     +  ++ ++L  +       N         L  L+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG--LQELD 284

Query: 477 LSHNFLTGIE--LLPWKNLRYLDLRSNSLKGSIPFLP---PSLNFISVSNNKLSGEI-PL 530
           L+   L+ +   L+    L+ L L +N  +          PSL  +S+  N    E+   
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 531 SFCNMSSIFYVNLSNNSLNGMIPPCLA---NSSLWFLDMRMNNFHGSIPQTFSKGSRLTI 587
              N+ ++  ++LS++ +       L     S L  L++  N       + F +  +L +
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 588 LNLNDNQLEGSVPLS-LVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP 646
           L+L   +L+     S   N   L+VL++ ++ ++ +       L  LQ L L+ N F   
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 647 ITYSVTRF-PFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY 705
                       +L IL LS  + +  +    F + + M                     
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMM--------------------- 502

Query: 706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP 765
                                  +DLS N+      E +  L  +  LN + N ++ ++P
Sbjct: 503 ---------------------NHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP 540

Query: 766 YSLENLTQLESLDLSSNKVAGEIPWQ--LTSLNFLQVLNLSQNQLVGP 811
             L  L+Q  +++L  N      P     +++ FL+    +  +L   
Sbjct: 541 SLLPILSQQRTINLRQN------PLDCTCSNIYFLEWYKENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  256 bits (656), Expect = 7e-75
 Identities = 102/586 (17%), Positives = 191/586 (32%), Gaps = 83/586 (14%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            IP +L   +    L+ S+N       +T S L  L  LDL+  +        F +  +L
Sbjct: 26  EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG 361
             L  + N L     +++S   +L  ++     ++      L     LES+ L +N ++ 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 362 SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFP 421
                      L  L   +N +   +     + L+    L L+ N   ++ + P      
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 422 YLSMLSLSSCNISEFPD---FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLS 478
               L+                 T   L +    D       P     + + ++  +NL 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 479 HNFLTGIE---LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNM 535
            ++   I       +  L+ LDL +  L                       E+P     +
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLS----------------------ELPSGLVGL 300

Query: 536 SSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSI-PQTFSKGSRLTILNLNDN 593
           S++  + LS N    +     +N  SL  L ++ N     +          L  L+L+ +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 594 QLEGS--VPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651
            +E S    L L N S L+ L++  N              +L++L L   R       S 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILT 711
            +     L++L+LS++        + F    A+                           
Sbjct: 421 FQ-NLHLLKVLNLSHSLLDI-SSEQLFDGLPAL--------------------------- 451

Query: 712 VKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVG---KLNSLKGLNFSHNKLTGLIPYSL 768
                            ++L GN F     +       L  L+ L  S   L+ +  ++ 
Sbjct: 452 ---------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 769 ENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ 814
            +L  +  +DLS N++       L+ L  +  LNL+ N +   +P 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  251 bits (644), Expect = 3e-73
 Identities = 103/574 (17%), Positives = 187/574 (32%), Gaps = 41/574 (7%)

Query: 131 SLDLSGNSQLGLDTPVLKALVQNL-NELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNC 189
           + +             L  +   L N  + L  +   +     +  + L +LT LDL  C
Sbjct: 16  TYNCENLG--------LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 190 GLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKV-NWSSPLRFMDLYGCNFMGSIPASLG 248
            +     +       L  L+L+ N  L  +     +    L+ +              L 
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLS--FLDF 306
           N   L  L L  N+ S          ++L+ LD  NN          ++L Q +   L+ 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 307 SNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL--LESIDLRNNQLTGSIS 364
           + N + G I           ++          I  GL  S +  L      +        
Sbjct: 187 NGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 365 NSISEL--VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPY 422
                L  +++  ++L  +     +    F     L  LDL+     LS L         
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTAT--HLSELPSGLVGLST 302

Query: 423 LSMLSLSSCNISEFPD-FLRTQHRLQILDLSDNQIRGGI-PNWIWNVGKDTLNHLNLSHN 480
           L  L LS+                L  L +  N  R  +    + N+    L  L+LSH+
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN--LRELDLSHD 360

Query: 481 FLTGIELLPW-----KNLRYLDLRSNSLKGSIPFLP---PSLNFISVSNNKLSGEIPLS- 531
            +   +          +L+ L+L  N             P L  + ++  +L  +   S 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 532 FCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQ---TFSKGSRLTI 587
           F N+  +  +NLS++ L+           +L  L+++ N+F     Q   +     RL I
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 588 LNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPI 647
           L L+   L      +  +   +  +D+ +NR+  +    L  L  +  L L SN     +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 648 TYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681
              +      + R ++L  N         YF  +
Sbjct: 540 PSLLP--ILSQQRTINLRQNPLDCTCSNIYFLEW 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (581), Expect = 2e-64
 Identities = 102/564 (18%), Positives = 177/564 (31%), Gaps = 93/564 (16%)

Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
            +      +  IP TL N      L+ S N         F+ L  L+FLD +  Q+    
Sbjct: 17  YNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 316 SSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLID 375
             +    H L T+ L+ N L     + L     L+ +      ++      +     L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 376 LSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLSLSSCNIS 434
           L L SN++S +++L      + L  LD  +N++  LS     +        L+L+  +I+
Sbjct: 134 LYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 435 EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLR 494
                       Q L+    Q    I   + N    +L            I    ++ L 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP 554
            + + S                I++  +        +F   S +  ++L+   L+     
Sbjct: 253 EMSVES----------------INLQKHYFFNISSNTFHCFSGLQELDLTATHLS----- 291

Query: 555 CLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDV 614
                               +P      S L  L L+ N+ E    +S  N   L  L +
Sbjct: 292 -------------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 615 -GNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVL 673
            GN +        L  L  L+ L L  +        ++       L+ L+LS NE    L
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-L 391

Query: 674 PTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSG 733
            T  F+    +                                            +DL+ 
Sbjct: 392 KTEAFKECPQL------------------------------------------ELLDLAF 409

Query: 734 NKFQGRIPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ- 791
            + + +  +     L+ LK LN SH+ L        + L  L+ L+L  N        + 
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 792 --LTSLNFLQVLNLSQNQLVGPIP 813
             L +L  L++L LS   L     
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (403), Expect = 6e-41
 Identities = 67/411 (16%), Positives = 121/411 (29%), Gaps = 61/411 (14%)

Query: 425 MLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG 484
             +  +  ++E P  L      + L+ S N +          +    L  L+L+   +  
Sbjct: 16  TYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLIN--LTFLDLTRCQIYW 71

Query: 485 IE---LLPWKNLRYLDLRSNSLKGSIPFL---PPSLNFISVSNNKLSGEIPLSFCNMSSI 538
           I          L  L L +N L          P +L  +      +S    +   N  ++
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 539 FYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTI--LNLNDNQL 595
             + L +N ++ +  P       L  LD + N  H    +  S   + T   LNLN N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 596 EGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLG--ALSELQVLILRSNRFHGPITYSVTR 653
              +     + +  + L+ G  +        L    +  L +                  
Sbjct: 192 A-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 654 FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVK 713
                +  ++L  + F  +     F  F  +                             
Sbjct: 251 LCEMSVESINLQKHYFFNISS-NTFHCFSGL----------------------------- 280

Query: 714 GVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQ 773
                          +DL+       +P  +  L++LK L  S NK   L   S  N   
Sbjct: 281 -------------QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 774 LESLDLSSNKVAGEI-PWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823
           L  L +  N    E+    L +L  L+ L+LS + +        Q    S 
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.6 bits (228), Expect = 3e-19
 Identities = 41/272 (15%), Positives = 73/272 (26%), Gaps = 51/272 (18%)

Query: 554 PCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLD 613
            C+        +      +  IP T    +    L  + N L      +      L  LD
Sbjct: 7   KCIEKEVNKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVL 673
           +   +I         +   L  L+L +N        +++      L+ L       +  +
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISS-I 120

Query: 674 PTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSG 733
                 N + +                                           ++ L  
Sbjct: 121 DFIPLHNQKTL------------------------------------------ESLYLGS 138

Query: 734 NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLE--SLDLSSNKVAGEIPWQ 791
           N               LK L+F +N +  L    + +L Q    SL+L+ N +   I   
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPG 197

Query: 792 LTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823
                  Q LN    Q +  I +G +  T  S
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 4e-13
 Identities = 34/245 (13%), Positives = 65/245 (26%), Gaps = 50/245 (20%)

Query: 587 ILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP 646
             N  +  L   +P +L   +  E L+   N +          L  L  L L   + +  
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 647 ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY 706
              +       +L  L L+ N     +        +A+                      
Sbjct: 73  HEDTFQ--SQHRLDTLVLTANPLIF-MAETALSGPKAL---------------------- 107

Query: 707 SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPY 766
                                 +              +    +L+ L    N ++ +   
Sbjct: 108 --------------------KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV--LNLSQNQLVGPIPQGKQFHTFSSD 824
                 +L+ LD  +N +       ++SL       LNL+ N + G  P       F S 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 825 SYNGN 829
           ++ G 
Sbjct: 208 NFGGT 212

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  273 bits (700), Expect = 9e-79
 Identities = 103/661 (15%), Positives = 206/661 (31%), Gaps = 107/661 (16%)

Query: 24  SDSYSKMISWKEEKDCCSWDGVTCDMMT--GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQ 81
            ++    ++W   K+   W       +   G VTGL L+     G +P   ++  L  L+
Sbjct: 293 INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELK 350

Query: 82  ILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLG 141
           +L+   +    S    G                        + +  +L   DL  +    
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD---- 406

Query: 142 LDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR 201
                    +    E++ +  +S            +L      +L N      I + I R
Sbjct: 407 --------AINRNPEMKPIKKDS----------RISLKDTQIGNLTN--RITFISKAIQR 446

Query: 202 LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYN 261
           L  LQ +  + +   T     V+W       +        +   S  NL  LT ++L   
Sbjct: 447 LTKLQIIYFANSP-FTYDNIAVDWED----ANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 262 NFSGHIPSTLSNLQQLRHLDLSNNKFTG---------QIPCIFANLTQLSFLDFSNNQLN 312
                +P  L +L +L+ L+++ N+            ++        ++       N L 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 313 G-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV 371
             P S+S+ ++  L  +   +N +         T+  L  + L  NQ+     +  +   
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 372 NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC 431
            +  L  S N L     ++    +  +  +D S+N +          S       S+   
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI---------GSEGRNISCSMDDY 670

Query: 432 NISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWK 491
                            + LS N+I+              ++ + LS+N +T I      
Sbjct: 671 KGI----------NASTVTLSYNEIQKFPTELFATGSP--ISTIILSNNLMTSIP----- 713

Query: 492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP--LSFCNMSSIFYVNLSNNSLN 549
                +       G+       L  I +  NKL+  +        +  +  +++S N  +
Sbjct: 714 -----ENSLKPKDGNYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 550 GMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF 608
              P    N S L    +R                     +   N++    P  +  C  
Sbjct: 767 S-FPTQPLNSSQLKAFGIRHQ------------------RDAEGNRILRQWPTGITTCPS 807

Query: 609 LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF-HGPITYSVTRFPFPKLRILDLSNN 667
           L  L +G+N I       L    +L +L +  N      +T   +  P+ +  +  L  +
Sbjct: 808 LIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVT---SVCPYIEAGMYVLLYD 861

Query: 668 E 668
           +
Sbjct: 862 K 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  243 bits (622), Expect = 3e-68
 Identities = 88/634 (13%), Positives = 184/634 (29%), Gaps = 104/634 (16%)

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
             +       L N  ++T L L+     G +P  +  L +L+ L    +  T        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 297 NLTQLSFLDFSNNQLNGPISS-SVSRLHSLVTIYLSYNSLN-----GTIPSGLFTSPLLE 350
                   +   +++        +     L    L  +++N       I      S    
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
            I    N++T  IS +I  L  L  +  +++  +            +    +  +     
Sbjct: 429 QIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQ-Y 480

Query: 411 STLLPVNSSFPYLSMLSLSSCN-ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK 469
                  S+   L+ + L +C  +++ PDFL     LQ L+++ N+             +
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS--------AAQ 532

Query: 470 DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP----PSLNFISVSNNKLS 525
              +   L+ +  TG        ++   +  N+L+             L  +   +NK+ 
Sbjct: 533 LKADWTRLADDEDTG------PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGS- 583
             +  +F     +  + L  N +  +     A    +  L    N     IP  F+  S 
Sbjct: 587 -HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643

Query: 584 -RLTILNLNDNQLEG-----SVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLI 637
             +  ++ + N++       S  +          + +  N I           S +  +I
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 638 LRSNRFHGPITYSVTRFPF-----PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA 692
           L +N        S+            L  +DL  N+ T +           +        
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL-------- 755

Query: 693 EGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKG 752
                                             + +D+S N F    P      + LK 
Sbjct: 756 ----------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKA 780

Query: 753 LNFSH------NKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN 806
               H      N++    P  +     L  L + SN +  ++  +L     L +L+++ N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADN 837

Query: 807 QL-VGPIPQGKQFHTFSSDS--YNGNMGLCGFPL 837
                 +     +         Y+    + G   
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  238 bits (608), Expect = 3e-66
 Identities = 102/662 (15%), Positives = 196/662 (29%), Gaps = 116/662 (17%)

Query: 163 NSVDMSYEVPS-FLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP 221
             +DM  + P   L N   +T L L   G +G +P+ I +L  L+ L    + + T    
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGR 364

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
                                      +  +   + + Y          L+    L+   
Sbjct: 365 LFGDEELT----------------PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
             N +          +L      +   N++   IS ++ RL  L  IY + +       +
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGN-LTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 342 GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGL 401
                   E  +    +   +   S S L +L D+ L +      +      +L  L  L
Sbjct: 467 -----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSL 520

Query: 402 DLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIP 461
           +++ N                    +    + +   D   T  ++QI  +  N +    P
Sbjct: 521 NIACNRGI---------------SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FP 564

Query: 462 NWIWNVGKDTLNHLNLSHNFLTGI-ELLPWKNLRYLDLRSNSLKG---SIPFLPPSLNFI 517
                     L  L+  HN +  +        L  L L  N ++            +  +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 518 SVSNNKLSGEIP--LSFCNMSSIFYVNLSNNSLNGMIP------PCLANSSLWFLDMRMN 569
             S+NKL   IP   +  ++  +  V+ S N +                 +   + +  N
Sbjct: 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 570 NFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGA 629
                  + F+ GS ++ + L++N +  S+P                             
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMT-SIP----------------ENSLKPKDGNYKN 726

Query: 630 LSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNN 689
              L  + LR N+    ++        P L  +D+S N F+   PT+             
Sbjct: 727 TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL----------- 773

Query: 690 NSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNS 749
                                     N    K   I    D  GN+   + P  +    S
Sbjct: 774 --------------------------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 750 LKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK-VAGEIPWQLTSLNF-LQVLNLSQNQ 807
           L  L    N +  +     +   QL  LD++ N  ++ ++      +   + VL   + Q
Sbjct: 808 LIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

Query: 808 LV 809
            +
Sbjct: 865 DI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (490), Expect = 5e-51
 Identities = 86/658 (13%), Positives = 184/658 (27%), Gaps = 113/658 (17%)

Query: 204 NLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF 263
            L+ + ++Y ++        N +     + +  C+    +PA    +   T     Y+  
Sbjct: 172 ELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTYQVVAYTT----YSQS 227

Query: 264 SGHIPSTLSNLQQLRHLDLSNNKFTGQ-------------IPCIFANLTQLSFLDFSNNQ 310
                   +   +     + +NK T               I    A       LD  N +
Sbjct: 228 GIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWR 287

Query: 311 LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISEL 370
                 ++     +        +         L  +  +  + L      G + ++I +L
Sbjct: 288 YYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS 430
             L  LS  +++ + +  L    E       +   + + +            L++  L  
Sbjct: 347 TELKVLSFGTHSETVSGRL-FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 431 CNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI--ELL 488
             I+  P+    +     + L D Q                   +    N +T I   + 
Sbjct: 406 DAINRNPEMKPIKK-DSRISLKDTQ-------------------IGNLTNRITFISKAIQ 445

Query: 489 PWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548
               L+ +   ++        +       +    K      LS+ N+  +  V L N   
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAV--DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 549 NGMIPPCLAN-SSLWFLDMRMNNFHG---------SIPQTFSKGSRLTILNLNDNQLEG- 597
              +P  L +   L  L++  N              +      G ++ I  +  N LE  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 598 SVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP 657
               SL     L +LD  +N++     A  G   +L  L L  N+    I      F   
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE-IPEDFCAFT-D 619

Query: 658 KLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNM 717
           ++  L  S+N+   +      ++   M                                 
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVM--------------------------------- 646

Query: 718 EMEKVLNIFTTIDLSGNKFQGRIPEVVGKLN-----SLKGLNFSHNKLTGLIPYSLENLT 772
                     ++D S NK       +   ++     +   +  S+N++           +
Sbjct: 647 ---------GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 773 QLESLDLSSNK-------VAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823
            + ++ LS+N                  +   L  ++L  N+L   +    +  T   
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (259), Expect = 8e-23
 Identities = 40/288 (13%), Positives = 89/288 (30%), Gaps = 21/288 (7%)

Query: 542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
           +  N            +S  W  +  ++ +            R+T L+L     +G VP 
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341

Query: 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661
           ++   + L+VL  G +    +   +        +   R +R        +      +L +
Sbjct: 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK-KMFLDYDQRLNL 400

Query: 662 LDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEK 721
            DL  +        +  +    +   +       N               +  ++  +++
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--------------ITFISKAIQR 446

Query: 722 VLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSS 781
           +  +   I  + + F      V       +  N  + K       S  NL  L  ++L +
Sbjct: 447 LTKL-QIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 782 NKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGN 829
                ++P  L  L  LQ LN++ N+ +        +   + D   G 
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 6e-21
 Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 23/266 (8%)

Query: 51  TGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNY----SYISPGFTRFPNLA 106
           T  V GL  S ++L   IP+  +  S+  +  ++ ++N           S    +  N +
Sbjct: 618 TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 107 HLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVD 166
            + LS +          +  S + ++ LS N    +    LK    N      L   ++D
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT--TID 734

Query: 167 MSY----EVPS--FLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNK-----N 215
           + +     +      T L  L+++D+       S P        L+   + + +      
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 216 LTSVFPKVNWSSP-LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNL 274
           +   +P    + P L  + + G N +  +   L    QL  LD++ N       +++   
Sbjct: 794 ILRQWPTGITTCPSLIQLQI-GSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPY 850

Query: 275 QQLRHLDLSNNKFTGQIPCIFANLTQ 300
            +     L  +K      C    + +
Sbjct: 851 IEAGMYVLLYDKTQDIRGCDALGIER 876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  255 bits (654), Expect = 1e-74
 Identities = 109/564 (19%), Positives = 190/564 (33%), Gaps = 57/564 (10%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
             +  +++LS +          S+ S+L  LDLS      ++          L+ L  L+
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW----HGLHHLSNLI 86

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP 221
           L    +    P   + L+SL +L      L       I +L  L+ L +++N  + S   
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSC-- 143

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLR--- 278
                                +PA   NL+ L ++DLSYN       + L  L++     
Sbjct: 144 --------------------KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 279 -HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI-SSSVSRLHSLVTIYLSYNSLN 336
             LD+S N         F  + +L  L    N  +  I  + +  L  L    L      
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 337 GTIPSGLFTSPLLES--------IDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388
                 +F   ++E           L               L N+  +SL+  ++     
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---Y 299

Query: 389 LYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQI 448
           L    +      L +    L            P+L  L+L+    S     +     L  
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFP----TLDLPFLKSLTLTMNKGSISFKKVALP-SLSY 354

Query: 449 LDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKGS 506
           LDLS N +         ++G ++L HL+LS N    +    +  + L++LD + ++LK  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 507 IPFLP----PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN--SS 560
             F        L ++ +S      +    F  ++S+  + ++ NS        +    ++
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
           L FLD+            F    RL +LN++ N L             L  LD   NRI 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 621 GTFPAWLGALSELQVLILRSNRFH 644
            +          L    L +N   
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  252 bits (645), Expect = 2e-73
 Identities = 113/632 (17%), Positives = 204/632 (32%), Gaps = 92/632 (14%)

Query: 193 GSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQ 252
           GS+   I  +PN+          L+ V   +  S   + +DL           S  N S+
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQ-KLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSE 57

Query: 253 LTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
           L +LDLS              L  L +L L+ N      P  F+ LT L  L     +L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELV 371
              S  + +L +L  + +++N ++       F++   L  +DL  N +     N +  L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 372 NL----IDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLS 427
                 + L +S N +   ++   F  +  L  L L  N  S + +     +   L +  
Sbjct: 178 ENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 428 LSSCNISEF-------PDFLRTQHRLQI--LDLSDNQIRGGIPNWIWNVGKDTLNHLNLS 478
           L      +        P  +     + I    L+              +    ++ ++L+
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN--VSAMSLA 293

Query: 479 HNFLTGIELLPWK-NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSS 537
              +  +E +P     + L +    LK       P L  ++++ NK S  I      + S
Sbjct: 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPS 351

Query: 538 IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG 597
           + Y++LS N+L+       ++                        + L  L+L+ N    
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGT---------------------NSLRHLDLSFNGAI- 389

Query: 598 SVPLSLVNCSFLEVLDVGNNRINGTFPAW-LGALSELQVLILRSNRFHGPITYSVTRFPF 656
            +  + +    L+ LD  ++ +          +L +L  L +                  
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL--GL 447

Query: 657 PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVN 716
             L  L ++ N F     +  F N   +                                
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNL-------------------------------- 475

Query: 717 MEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES 776
                     T +DLS  + +     V   L+ L+ LN SHN L  L       L  L +
Sbjct: 476 ----------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 777 LDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           LD S N++             L   NL+ N +
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  250 bits (640), Expect = 1e-72
 Identities = 97/528 (18%), Positives = 182/528 (34%), Gaps = 35/528 (6%)

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP- 228
           +VP  +   SS  ++DL    L+     +      LQ L LS  + + ++  K       
Sbjct: 25  KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHH 81

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
           L  + L G       P S   L+ L  L       +      +  L  L+ L++++N   
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 289 G-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLH----SLVTIYLSYNSLNGTIPSGL 343
             ++P  F+NLT L  +D S N +     + +  L       +++ +S N ++  I    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 344 FTSPLLESIDLRNNQLTGSI-SNSISELVNLIDLSLSSNNLSGNVELY-----MFAELKN 397
           F    L  + LR N  + +I    +  L  L    L          L      +   L +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 398 LLGLDLSHNSLSLSTLLP-VNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQI 456
           +   +      +  +           +S +SL+  +I    D  +   + Q L +   Q+
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH-FKWQSLSIIRCQL 319

Query: 457 RGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSLKGSIP-----FL 510
           +      +       L  L L+ N  +     +   +L YLDL  N+L  S         
Sbjct: 320 KQFPTLDLPF-----LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 511 PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP-CLAN-SSLWFLDMRM 568
             SL  + +S N     +  +F  +  + +++  +++L  +       +   L +LD+  
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 569 NNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLS-LVNCSFLEVLDVGNNRINGTFPAWL 627
            N        F   + L  L +  N  + +   +   N + L  LD+   ++        
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 628 GALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPT 675
             L  LQ+L +  N      +          L  LD S N        
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYN--QLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  235 bits (602), Expect = 2e-67
 Identities = 100/581 (17%), Positives = 204/581 (35%), Gaps = 52/581 (8%)

Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
           GS+   +  +  +T         S  +P  + +    +++DLS N         F+N ++
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 301 LSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360
           L +LD S  ++      +   LH L  + L+ N +    P        LE++     +L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 361 GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN---SLSLSTLLPVN 417
              S  I +L+ L  L+++ N +        F+ L NL+ +DLS+N   +++++ L  + 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 418 SSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNL 477
            +      L +S   I    D      +L  L L  N     I           L+   L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRL 236

Query: 478 SHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSS 537
                        K+ R L++   S+   +  +  +++   ++      +  + F  +++
Sbjct: 237 ILGEF--------KDERNLEIFEPSIMEGLCDV--TIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 538 IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG 597
           +  ++L+  S+   +     +     L +                  L  L L  N+   
Sbjct: 287 VSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKG-- 340

Query: 598 SVPLSLVNCSFLEVLDVGNNRINGTFPA--WLGALSELQVLILRSNRFHGPITYSVTRFP 655
           S+    V    L  LD+  N ++ +          + L+ L L  N        S     
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMG 397

Query: 656 FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGN--NNSAEGGNMYINYGNEYYSAILTVK 713
             +L+ LD  ++    V     F + + +++ +    + +     I  G           
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------- 446

Query: 714 GVNMEMEKVLNIFTTIDLSGNKFQGRIP-EVVGKLNSLKGLNFSHNKLTGLIPYSLENLT 772
                    L    T+ ++GN F+      V     +L  L+ S  +L  +     + L 
Sbjct: 447 ---------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 773 QLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813
           +L+ L++S N +          L  L  L+ S N++     
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  176 bits (449), Expect = 8e-47
 Identities = 92/417 (22%), Positives = 159/417 (38%), Gaps = 40/417 (9%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           LD+S + +   I   +  F    L  L L  N  + + +         L    L +  F 
Sbjct: 186 LDMSLNPID-FIQDQA--FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 117 GQIPAEISHLSKLVSL--------DLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMS 168
            +   EI   S +  L         L+  +    D          L  +  + L  V + 
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF----HCLANVSAMSLAGVSIK 298

Query: 169 YEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP 228
           Y     +       SL +  C L+     +   LP L++L L+ NK  +  F KV   S 
Sbjct: 299 Y--LEDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNK-GSISFKKVALPS- 351

Query: 229 LRFMDLYGCNFMGSIPASLGNL--SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNK 286
           L ++DL       S   S  +L  + L +LDLS+N     + +    L++L+HLD  ++ 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST 410

Query: 287 FTGQIPC-IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT 345
                    F +L +L +LD S              L SL T+ ++ NS      S +F 
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 346 S-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLS 404
           +   L  +DL   QL          L  L  L++S NNL   ++   + +L +L  LD S
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCS 529

Query: 405 HNSLSL--STLLPVNSSFPYLSMLSLSS------CNISEFPDFLRTQHRLQILDLSD 453
            N +      L     S   L+  +L++      C   +F  +++ + +  ++++  
Sbjct: 530 FNRIETSKGILQHFPKS---LAFFNLTNNSVACICEHQKFLQWVK-EQKQFLVNVEQ 582

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (400), Expect = 2e-40
 Identities = 90/518 (17%), Positives = 153/518 (29%), Gaps = 116/518 (22%)

Query: 313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVN 372
           G ++  +  + ++ T       L+  +P  + +S   ++IDL  N L    S S S    
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSE 57

Query: 373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN 432
           L  L LS   +   +E   +  L +L  L L+ N +          SF            
Sbjct: 58  LQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQ---------SFS----------- 96

Query: 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLP--- 489
               P        L+ L   + ++       I  +    L  LN++HNF+   +L     
Sbjct: 97  ----PGSFSGLTSLENLVAVETKLASLESFPIGQLIT--LKKLNVAHNFIHSCKLPAYFS 150

Query: 490 -WKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548
              NL ++DL  N ++         L      N  L                 ++S N +
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL-----------------DMSLNPI 193

Query: 549 NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKG-SRLTILNLNDNQLEGSVPLSLVNCS 607
           + +         L  L +R N    +I +T  +  + L +  L   + +    L +   S
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 608 FLE--------VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKL 659
            +E           +               L+ +  + L        I Y        K 
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS----IKYLEDVPKHFKW 309

Query: 660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEM 719
           + L +   +     PT      +                                     
Sbjct: 310 QSLSIIRCQLKQ-FPTLDLPFLK------------------------------------- 331

Query: 720 EKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL--TQLESL 777
                   ++ L+ NK  G I      L SL  L+ S N L+     S  +L    L  L
Sbjct: 332 --------SLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
           DLS N     +      L  LQ L+   + L       
Sbjct: 382 DLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFS 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 8e-12
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             +DLS  + +    +    L+ L  L  + N +    P S   LT LE+L     K+A 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 787 EIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823
              + +  L  L+ LN++ N +         F   ++
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTN 154

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  220 bits (564), Expect = 3e-65
 Identities = 92/365 (25%), Positives = 141/365 (38%), Gaps = 85/365 (23%)

Query: 28  SKMISWKEEKDCC--SWDGVTCDMMT--GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQIL 83
           + + SW    DCC  +W GV CD  T    V  LDLS   L    P  SSL +LP+L  L
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 84  NLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLD 143
            +                          +++  G IP  I+ L++L  L ++  +     
Sbjct: 82  YIG------------------------GINNLVGPIPPAIAKLTQLHYLYITHTN----- 112

Query: 144 TPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLP 203
                                  +S  +P FL+ + +L +LD     L G++P +I  LP
Sbjct: 113 -----------------------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 204 NLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL-TYLDLSYNN 262
           NL  +    N                           G+IP S G+ S+L T + +S N 
Sbjct: 150 NLVGITFDGN------------------------RISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 263 FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRL 322
            +G IP T +NL  L  +DLS N   G    +F +      +  + N L   +   V   
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243

Query: 323 HSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN 382
            +L  + L  N + GT+P GL     L S+++  N L G I      L      + ++N 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

Query: 383 -LSGN 386
            L G+
Sbjct: 303 CLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  217 bits (554), Expect = 6e-64
 Identities = 84/330 (25%), Positives = 127/330 (38%), Gaps = 51/330 (15%)

Query: 517 ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG--MIPPCLAN-SSLWFLDMR-MNNFH 572
               N    G +  +      +  ++LS  +L     IP  LAN   L FL +  +NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSE 632
           G IP   +K ++L  L +    + G++P  L     L  LD   N ++GT P  + +L  
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 633 LQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA 692
           L  +    NR  G I  S   F       + +S N  TG +P                  
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFS-KLFTSMTISRNRLTGKIP-----------------P 192

Query: 693 EGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKG 752
              N+ + +                           +DLS N  +G    + G   + + 
Sbjct: 193 TFANLNLAF---------------------------VDLSRNMLEGDASVLFGSDKNTQK 225

Query: 753 LNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPI 812
           ++ + N L   +   +     L  LDL +N++ G +P  LT L FL  LN+S N L G I
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 813 PQGKQFHTFSSDSYNGNMGLCGFPLSEKCS 842
           PQG     F   +Y  N  LCG PL   C+
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  207 bits (529), Expect = 2e-60
 Identities = 95/372 (25%), Positives = 148/372 (39%), Gaps = 80/372 (21%)

Query: 170 EVPSFLTNLSSLTS----LDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNW 225
           ++   L N ++L+S     D  N    G + +   +   + NL LS              
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN----------- 61

Query: 226 SSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS-YNNFSGHIPSTLSNLQQLRHLDLSN 284
                   L        IP+SL NL  L +L +   NN  G IP  ++ L QL +L +++
Sbjct: 62  --------LPK---PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 285 NKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
              +G IP   + +  L  LDFS N L+G +  S+S L +LV I    N ++G IP    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 345 T-SPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDL 403
           + S L  S+ +  N+LTG I  + + L NL  + LS N L G+  + +F   KN   + L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV-LFGSDKNTQKIHL 228

Query: 404 SHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNW 463
           + NSL+             + +                    L  LDL +N+I G +P  
Sbjct: 229 AKNSLA--------FDLGKVGLSK-----------------NLNGLDLRNNRIYGTLPQG 263

Query: 464 IWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP--PSLNFISVSN 521
           +  +                       K L  L++  N+L G IP        +  + +N
Sbjct: 264 LTQL-----------------------KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

Query: 522 NKLSGEIPLSFC 533
           NK     PL  C
Sbjct: 301 NKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  197 bits (503), Expect = 9e-57
 Identities = 79/344 (22%), Positives = 133/344 (38%), Gaps = 57/344 (16%)

Query: 242 SIPASLGNLSQL----TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ--IPCIF 295
            I   LGN + L       D     + G +  T +   ++ +LDLS         IP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 296 ANLTQLSFLDFSN-NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDL 354
           ANL  L+FL     N L GPI  ++++L  L  +Y+++ +++G IP  L     L ++D 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 355 RNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
             N L+G++  SIS L NL+ ++   N +SG +     +  K    + +S N L+     
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----- 187

Query: 415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNH 474
                 P     + ++ N             L  +DLS N + G       +        
Sbjct: 188 ---GKIP----PTFANLN-------------LAFVDLSRNMLEGDASVLFGSD------- 220

Query: 475 LNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFL--PPSLNFISVSNNKLSGEIPLSF 532
                           KN + + L  NSL   +  +    +LN + + NN++ G +P   
Sbjct: 221 ----------------KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 533 CNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIP 576
             +  +  +N+S N+L G IP               N      P
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (445), Expect = 6e-49
 Identities = 76/324 (23%), Positives = 120/324 (37%), Gaps = 57/324 (17%)

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL-YMFAELKNLLGLDLSH-NS 407
            + D  N    G + ++ ++   + +L LS  NL     +    A L  L  L +   N+
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNV 467
           L                            P  +    +L  L ++   + G IP+++  +
Sbjct: 89  LV------------------------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 468 GKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP---FLPPSLNFISVSNNKL 524
                                  K L  LD   N+L G++P      P+L  I+   N++
Sbjct: 125 -----------------------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 525 SGEIPLSFCNMSSIF-YVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGS 583
           SG IP S+ + S +F  + +S N L G IPP  AN +L F+D+  N   G     F    
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
               ++L  N L   +   +     L  LD+ NNRI GT P  L  L  L  L +  N  
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 644 HGPITYSVTRFPFPKLRILDLSNN 667
            G I          +  +   +NN
Sbjct: 281 CGEIP---QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (415), Expect = 8e-45
 Identities = 65/322 (20%), Positives = 123/322 (38%), Gaps = 61/322 (18%)

Query: 449 LDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLP-----WKNLRYLDLRS-NS 502
            D  +    G + +      +  +N+L+LS   L     +P        L +L +   N+
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYR--VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 503 LKGSIP---FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN- 558
           L G IP        L+++ +++  +SG IP     + ++  ++ S N+L+G +PP +++ 
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 559 SSLWFLDMRMNNFHGSIPQTFSKGSRL-TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617
            +L  +    N   G+IP ++   S+L T + ++ N+L G +P +  N + L  +D+  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207

Query: 618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRY 677
            + G      G+    Q + L  N     +           L  LDL NN   G LP   
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL---SKNLNGLDLRNNRIYGTLPQ-G 263

Query: 678 FQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQ 737
               + +                                           ++++S N   
Sbjct: 264 LTQLKFL------------------------------------------HSLNVSFNNLC 281

Query: 738 GRIPEVVGKLNSLKGLNFSHNK 759
           G IP+  G L       +++NK
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 95.7 bits (239), Expect = 1e-21
 Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 49/219 (22%)

Query: 602 SLVNCSFL----EVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP 657
            L N + L       D  N    G           +  L L       P     +    P
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76

Query: 658 KLRILDLSN-NEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVN 716
            L  L +   N   G +P                                          
Sbjct: 77  YLNFLYIGGINNLVGPIP-----------------PAIAK-------------------- 99

Query: 717 MEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES 776
                 L     + ++     G IP+ + ++ +L  L+FS+N L+G +P S+ +L  L  
Sbjct: 100 ------LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 777 LDLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQLVGPIPQ 814
           +    N+++G IP    S       + +S+N+L G IP 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  219 bits (561), Expect = 4e-62
 Identities = 113/524 (21%), Positives = 200/524 (38%), Gaps = 38/524 (7%)

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKV--NWSS 227
           ++P  L    S  +LDL    L+     + F  P LQ L LS    + ++      + S 
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSH 77

Query: 228 PLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF 287
            L  + L G         +   LS L  L     N +      + +L+ L+ L++++N  
Sbjct: 78  -LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 288 T-GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSL----VTIYLSYNSLNGTIPSG 342
              ++P  F+NLT L  LD S+N++     + +  LH +    +++ LS N +N  I  G
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 343 LFTSPLLESIDLRNNQLTGSI-SNSISELVNLIDLSLSSNNLSGNVELYM-----FAELK 396
            F    L  + LRNN  + ++    I  L  L    L          L          L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 397 NL--LGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDN 454
           NL      L++    L  ++ + +    +S  SL S  I    DF       Q L+L + 
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNC 314

Query: 455 QIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI-ELLPWKNLRYLDLRSNSL-----KGSIP 508
           +           +   +L  L  + N        +   +L +LDL  N L          
Sbjct: 315 KF-----GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 509 FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDM 566
           F   SL ++ +S N +   +  +F  +  + +++  +++L  M    +     +L +LD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 567 RMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV-PLSLVNCSFLEVLDVGNNRINGTFPA 625
              +   +    F+  S L +L +  N  + +  P        L  LD+   ++    P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 626 WLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEF 669
              +LS LQVL + SN+          R     L+ + L  N +
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLT--SLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  214 bits (546), Expect = 5e-60
 Identities = 117/622 (18%), Positives = 201/622 (32%), Gaps = 122/622 (19%)

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP-LRFMDLYGCNFM 240
            +           IP+N+    + +NL LS+N  L  +     +S P L+ +DL  C   
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
                +  +LS L+ L L+ N          S L  L+ L                +L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 301 LSFLDFSNNQLN-GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-----PLLESIDL 354
           L  L+ ++N +    +    S L +L  + LS N +  +I             L  S+DL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184

Query: 355 RNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
             N +   I     + + L  L+L +N  S NV       L  L    L          L
Sbjct: 185 SLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 415 PV--NSSFPYLSMLSLSSCNIS-------EFPDFLRTQHRLQILDLSDNQIRGGIPNWIW 465
                S+   L  L++    ++       +  D       +    L    I   + ++ +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSY 302

Query: 466 NVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKL 524
           N G   L  +N        ++L   K+L+ L   SN    +   +  PSL F+ +S N L
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 525 S--GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKG 582
           S  G    S    +S+ Y++LS N +                         ++   F   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI------------------------TMSSNFLGL 395

Query: 583 SRLTILNLNDNQLEGSVPLS-LVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641
            +L  L+   + L+     S  ++   L  LD+ +      F    G  + L        
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGL-------- 444

Query: 642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY 701
                            L +L ++ N F        F   + +                 
Sbjct: 445 ---------------SSLEVLKMAGNSFQENFLPDIFTELRNL----------------- 472

Query: 702 GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLT 761
                                    T +DLS  + +   P     L+SL+ LN + N+L 
Sbjct: 473 -------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 762 GLIPYSLENLTQLESLDLSSNK 783
            +     + LT L+ + L +N 
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  203 bits (518), Expect = 3e-56
 Identities = 106/567 (18%), Positives = 197/567 (34%), Gaps = 64/567 (11%)

Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPIS 316
                NF   IP  L      ++LDLS N         F +  +L  LD S  ++     
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 317 SSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLID 375
            +   L  L T+ L+ N +  ++  G F+    L+ +      L    +  I  L  L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 376 LSLSSNNLSGNVELYMFAELKNLLGLDLSHN---SLSLSTLLPVNSSFPYLSMLSLSSCN 432
           L+++ N +        F+ L NL  LDLS N   S+  + L  ++        L LS   
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIP-NWIWNVGKDTLNHLNL----SHNFLTGIEL 487
           ++        + RL  L L +N     +    I  +    ++ L L    +   L   + 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 488 LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS 547
              + L  L +    L                  +    +I   F  ++++   +L + +
Sbjct: 249 SALEGLCNLTIEEFRLA---------------YLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 548 LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCS 607
           +   +     N     L++    F         K   L  L    N+       S V+  
Sbjct: 294 IER-VKDFSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKG--GNAFSEVDLP 347

Query: 608 FLEVLDVGNNRIN--GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLS 665
            LE LD+  N ++  G         + L+ L L  N      T S       +L  LD  
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQ 404

Query: 666 NNEFTGVLPTRYFQNFQAMMH---GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKV 722
           ++    +     F + + +++    + +                      +     +   
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTH---------------------TRVAFNGIFNG 443

Query: 723 LNIFTTIDLSGNKFQGRI-PEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSS 781
           L+    + ++GN FQ    P++  +L +L  L+ S  +L  L P +  +L+ L+ L+++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 782 NKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           N++          L  LQ + L  N  
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  201 bits (513), Expect = 1e-55
 Identities = 105/495 (21%), Positives = 184/495 (37%), Gaps = 46/495 (9%)

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKV-NWSSPL 229
                +   L  LDL  C +Q +I +  ++ L +L  LIL+ N  + S+     +  S L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL 102

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF-SGHIPSTLSNLQQLRHLDLSNNKFT 288
           + +     N        +G+L  L  L++++N   S  +P   SNL  L HLDLS+NK  
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 289 GQIPCIFANLTQLSF----LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
                    L Q+      LD S N +N  I     +   L  + L  N  +  +     
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 345 TS-------PLLESIDLRNNQLTGSISNSISELVNLI--DLSLSSNNLSGNVELYMFAEL 395
                     L+         L     +++  L NL   +  L+  +   +  + +F  L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 396 KNLLGLDLSHNSLS----------LSTLLPVN--------SSFPYLSMLSLSSCNISEFP 437
            N+    L   ++              L  VN             L  L+ +S       
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 438 DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI--ELLPWKNLRY 495
             +     L+ LDLS N +         + G  +L +L+LS N +  +    L  + L +
Sbjct: 342 SEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 496 LDLRSNSLKGSIPF----LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM 551
           LD + ++LK    F       +L ++ +S+          F  +SS+  + ++ NS    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 552 IPPCLAN--SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFL 609
             P +     +L FLD+         P  F+  S L +LN+  NQL+          + L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 610 EVLDVGNNRINGTFP 624
           + + +  N  + + P
Sbjct: 521 QKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (451), Expect = 2e-47
 Identities = 110/513 (21%), Positives = 183/513 (35%), Gaps = 59/513 (11%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLSVSSF 115
           LDLS   +  +I   +   SL HL  L L  N      ++ G F+   +L  L    ++ 
Sbjct: 57  LDLSRCEIQ-TIEDGA-YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNL 112

Query: 116 SGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFL 175
           +      I HL  L  L+++ N    + +  L     NL  L+ L L+S  +     + L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNL---IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 176 TNLSSLT----SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP--- 228
             L  +     SLDL    +   I    F+   L  L L  N +  +V            
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 229 ---LRFMDLYGCNFMGSIPAS-LGNLSQLT--YLDLSYNNFSG-HIPSTLSNLQQLRHLD 281
              L   +      +     S L  L  LT     L+Y ++    I    + L  +    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 282 LSNNKFTGQIPCIF-------------------ANLTQLSFLDFSNNQLNGPISSSVSRL 322
           L +          +                     L  L  L F++N+     S     L
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DL 346

Query: 323 HSLVTIYLSYNSLNG-TIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSS 380
            SL  + LS N L+     S        L+ +DL  N +  ++S++   L  L  L    
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 381 NNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEF-- 436
           +NL    E  +F  L+NL+ LD+SH       +      +    L +L ++  +  E   
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 437 PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNL 493
           PD       L  LDLS  Q+   +    +N    +L  LN++ N L  +         +L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQ-LSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSG 526
           + + L +N    S P +     +++ ++ K  G
Sbjct: 521 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 7e-31
 Identities = 61/298 (20%), Positives = 109/298 (36%), Gaps = 20/298 (6%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFS-LPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS 111
           ++T  +   + L   +     LF+ L ++   +L                + +L  +N  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVL--NSVDMSY 169
              F          L  L  L  + N      + V      +L  L+ L L  N +    
Sbjct: 316 FGQFPTL------KLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKG 363

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP- 228
                    +SL  LDL   G+  ++  N   L  L++L   ++  L  +     + S  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 421

Query: 229 -LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPS-TLSNLQQLRHLDLSNNK 286
            L ++D+   +   +       LS L  L ++ N+F  +      + L+ L  LDLS  +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 287 FTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
                P  F +L+ L  L+ ++NQL         RL SL  I+L  N  + + P   +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 4e-11
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             +DLS  + Q         L+ L  L  + N +  L   +   L+ L+ L      +A 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 787 EIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823
              + +  L  L+ LN++ N +       + F   ++
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTN 150

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  225 bits (574), Expect = 5e-62
 Identities = 131/672 (19%), Positives = 223/672 (33%), Gaps = 122/672 (18%)

Query: 40  CSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG- 98
           CS+DG             +L+       +P       L   + L L+FN      ++   
Sbjct: 2   CSFDGRIAFYR-----FCNLT------QVPQV-----LNTTERLLLSFNYI--RTVTASS 43

Query: 99  FTRFPNLAHLNLSVSSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNEL 157
           F     L  L L        I  E   +L  L  LDL  +                +  L
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS---------------KIYFL 88

Query: 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQ-GSIPENIFR-LPNLQNLILSYNKN 215
                         P     L  L  L L  CGL    + +  FR L  L  L LS N  
Sbjct: 89  H-------------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-Q 134

Query: 216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ 275
           + S+                       +  S G L+ L  +D S N         L  LQ
Sbjct: 135 IRSL----------------------YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 276 Q--LRHLDLSNNKFTGQIPCIFANLTQ------LSFLDFSNNQLNGPISSSVSRLHSLVT 327
              L    L+ N    ++   +           L  LD S N              ++  
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW------------TVDI 220

Query: 328 IYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV--NLIDLSLSSNNLSG 385
                N+++ +    L  +  +       + +     N+ + L   ++  L LS   +  
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF- 279

Query: 386 NVELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEFPDF-LRT 442
           ++   +F  LK+L  L+L++N ++    +          L +L+LS   + E        
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINK---IADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS 502
             ++  +DL  N I          + K  L  L+L  N LT I  +P  ++  + L  N 
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEK--LQTLDLRDNALTTIHFIP--SIPDIFLSGNK 392

Query: 503 LKGSIPFLPPSLNFISVSNNKLSG-EIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA--NS 559
           L  ++P +  + N I +S N+L   +I      +  +  + L+ N  +          N 
Sbjct: 393 LV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451

Query: 560 SLWFLDMRMNNFHGSIPQTFSKG-----SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDV 614
           SL  L +  N    +             S L +L LN N L    P    + + L  L +
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 615 GNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLP 674
            +NR+       L   + L++L +  N+       +     F  L +LD+++N+F     
Sbjct: 512 NSNRLTVLSHNDL--PANLEILDISRNQLL-----APNPDVFVSLSVLDITHNKFICECE 564

Query: 675 TRYFQNFQAMMH 686
              F N+    +
Sbjct: 565 LSTFINWLNHTN 576

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  206 bits (527), Expect = 8e-56
 Identities = 122/574 (21%), Positives = 202/574 (35%), Gaps = 81/574 (14%)

Query: 179 SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP-LRFMDLYGC 237
                     C L   +P+    L   + L+LS+N  + +V          L+ ++L   
Sbjct: 4   FDGRIAFYRFCNLT-QVPQV---LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQ 58

Query: 238 NFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI--PCI 294
               +I   +  NL  L  LDL  +      P     L  L  L L     +  +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 295 FANLTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLF---TSPLLE 350
           F NL  L+ LD S NQ+    +  S  +L+SL +I  S N +   +            L 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLS 177

Query: 351 SIDLRNNQLTGSISNSISELVNLI-DLSLSSNNLSGN----------------VELYMFA 393
              L  N L   +S    + +N   ++ L   ++SGN                 + +   
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 394 ELKNLLGLDLSHNSL-SLSTLLPVNSSFPYLSMLSLSSCNISEF-PDFLRTQHRLQILDL 451
              +++G     +++           +   +  L LS   +         T   L++L+L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 452 SDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSL----K 504
           + N+I   I +  +  G D L  LNLS+N L  +          + Y+DL+ N +     
Sbjct: 298 AYNKIN-KIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 505 GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN------ 558
            +  FL   L  + + +N L+     +   + SI  + LS N L  +    L        
Sbjct: 356 QTFKFL-EKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409

Query: 559 ----------------SSLWFLDMRMNNFHG-SIPQTFSKGSRLTILNLNDNQLEGSVPL 601
                             L  L +  N F   S  QT S+   L  L L +N L+ +   
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 602 SLVNCSF-----LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF 656
            L    F     L+VL + +N +N   P     L+ L+ L L SNR    +T        
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR----LTVLSHNDLP 525

Query: 657 PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN 690
             L ILD+S N+         F +   +   +N 
Sbjct: 526 ANLEILDISRNQLL-APNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  203 bits (519), Expect = 9e-55
 Identities = 122/609 (20%), Positives = 216/609 (35%), Gaps = 73/609 (11%)

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI-PSTL 271
             NLT V   +   +    + L          +S   L QL  L+L        I     
Sbjct: 13  FCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 272 SNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI--SSSVSRLHSLVTIY 329
            NL  LR LDL ++K     P  F  L  L  L      L+  +        L +L  + 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 330 LSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISEL--VNLIDLSLSSNNLSGN 386
           LS N +        F     L+SID  +NQ+     + +  L    L   SL++N+L   
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 387 VELYMFAELKNLLGLDLSHNSLSLS--TLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH 444
           V +     +     + L    +S +  T+    +    +S     S         L   H
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS---------LILAH 240

Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLK 504
            +       + I+    N    + + ++ HL+LSH F+  +    ++ L           
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL----------- 289

Query: 505 GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWF 563
                    L  ++++ NK++     +F  + ++  +NLS N L  +          + +
Sbjct: 290 -------KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 564 LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTF 623
           +D++ N+      QTF    +L  L+L DN L      ++     +  + +  N++    
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLP 397

Query: 624 PAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQA 683
              L       ++ L  NR    +         P L+IL L+ N F+     +      +
Sbjct: 398 KINL----TANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452

Query: 684 MMH---GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRI 740
           +     G N         + +      + L V                + L+ N      
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQV----------------LYLNHNYLNSLP 496

Query: 741 PEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV 800
           P V   L +L+GL+ + N+LT L    L     LE LD+S N++    P    S   L V
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVS---LSV 551

Query: 801 LNLSQNQLV 809
           L+++ N+ +
Sbjct: 552 LDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  196 bits (500), Expect = 2e-52
 Identities = 98/573 (17%), Positives = 186/573 (32%), Gaps = 85/573 (14%)

Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
               + N +  +P  L+  +    L LS N         F  L QL  L+  +      I
Sbjct: 9   AFYRFCNLT-QVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 316 SSSV-SRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSI--SNSISELV 371
                  L +L  + L  + +   +    F     L  + L    L+ ++        L 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 372 NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLSLSS 430
            L  L LS N +        F +L +L  +D S N +  +            LS  SL++
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 431 CNISEFP--DFLRTQH-----RLQILDLSDNQIRGGIPNWIWN-VGKDTLNHLNLSHNFL 482
            ++      D+ +  +      L+ILD+S N     I     N + K     L L+H+  
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH-- 241

Query: 483 TGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
             I    +      D   N+  G       S+  + +S+  +       F  +  +  +N
Sbjct: 242 --IMGAGFGFHNIKDPDQNTFAGLAR---SSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 543 LSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
           L+ N +N +         +L  L++  N         F    ++  ++L  N +      
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661
           +      L+ LD+ +N +       +  +  +  + L  N+       ++ +       +
Sbjct: 357 TFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-----TLPKINL-TANL 405

Query: 662 LDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEK 721
           + LS N    +    +      +                                     
Sbjct: 406 IHLSENRLENLDILYFLLRVPHL------------------------------------- 428

Query: 722 VLNIFTTIDLSGNKFQGRIPEVV-GKLNSLKGLNFSHNKL-----TGLIPYSLENLTQLE 775
                  + L+ N+F     +    +  SL+ L    N L     T L     E L+ L+
Sbjct: 429 -----QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 776 SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
            L L+ N +    P   + L  L+ L+L+ N+L
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (351), Expect = 8e-34
 Identities = 83/493 (16%), Positives = 145/493 (29%), Gaps = 123/493 (24%)

Query: 320 SRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLS 379
           S        +  + +L   +P  L      E + L  N +    ++S   L  L  L L 
Sbjct: 1   SCSFDGRIAFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 380 SNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF 439
           S      ++   F  L NL  LDL  + +     L                      PD 
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKI---YFLH---------------------PDA 92

Query: 440 LRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLP----WKNLRY 495
            +    L  L L    +   +    +      L  L+LS N +  + L P      +L+ 
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 496 LDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPC 555
           +D  SN +      +                   L      ++ + +L+ NSL   +   
Sbjct: 153 IDFSSNQIF----LVCEHE---------------LEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 556 LANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG 615
                  F                 +   L IL+++ N               +++    
Sbjct: 194 WGKCMNPF-----------------RNMVLEILDVSGNGWT------------VDITGNF 224

Query: 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPT 675
           +N I+ +    L     +       +    P   +        +R LDLS+      L +
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNS 283

Query: 676 RYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK 735
           R F+  + +                                            ++L+ NK
Sbjct: 284 RVFETLKDL------------------------------------------KVLNLAYNK 301

Query: 736 FQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL 795
                 E    L++L+ LN S+N L  L   +   L ++  +DL  N +A         L
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 796 NFLQVLNLSQNQL 808
             LQ L+L  N L
Sbjct: 362 EKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLI-PYSLENLTQLESLDLSSNKVA 785
             + LS N  +         L  L+ L          I   +  NL  L  LDL S+K+ 
Sbjct: 27  ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 786 GEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS 823
              P     L  L  L L    L   + +   F    +
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  189 bits (482), Expect = 1e-51
 Identities = 83/490 (16%), Positives = 178/490 (36%), Gaps = 39/490 (7%)

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSP-L 229
              L   ++L  L L +  +  +I  + F  L +L++L LS N  L+S+          L
Sbjct: 43  HGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSL 100

Query: 230 RFMDLYGCNFMG-SIPASLGNLSQLTYLDLSYNNFSGHIP-STLSNLQQLRHLDLSNNKF 287
           ++++L G  +    + +   NL+ L  L +        I     + L  L  L++     
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 288 TGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSP 347
                    ++  +  L    ++    +      L S+  + L   +L     S L    
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 348 LLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS 407
           +   +     + +     S +EL+ L+   L  + +        F +       D + + 
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-------FDDCTLNGLGDFNPSE 273

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNISE-FPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
             + + L        +  L +    +            +++ + + ++++   +P     
Sbjct: 274 SDVVSELG-KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331

Query: 467 VGKDTLNHLNLSHNFLTGIELLP------WKNLRYLDLRSNSLKGSIPFLP------PSL 514
               +L  L+LS N +    L        W +L+ L L  N L+ S+           +L
Sbjct: 332 -HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNL 389

Query: 515 NFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS 574
             + +S N     +P S      + ++NLS+  +  ++  C+   +L  LD+  NN    
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP-QTLEVLDVSNNN---- 442

Query: 575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ 634
           +        RL  L ++ N+L+ ++P        L V+ +  N++          L+ LQ
Sbjct: 443 LDSFSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 635 VLILRSNRFH 644
            + L +N + 
Sbjct: 501 KIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  176 bits (447), Expect = 4e-47
 Identities = 103/505 (20%), Positives = 198/505 (39%), Gaps = 29/505 (5%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLS 111
            +  LDLS +++   I     L +  +LQ+L L  +    + I    F    +L HL+LS
Sbjct: 27  AMKSLDLSFNKIT-YIGH-GDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLS 82

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
            +  S    +    LS L  L+L GN      T  + +L  NL  LQ L + +V+   E+
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNP---YQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 172 P-SFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPL 229
                  L+SL  L++    L+ +      + + ++ +L L  +++   +    +  S +
Sbjct: 140 RRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
           R+++L   N      + L      + +       S     + + L +L    L  ++   
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE- 257

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
                F + T     DF+ ++ +           ++  +++    L   + +       +
Sbjct: 258 -----FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNV--ELYMFAELKNLLGLDLSHNS 407
           + I + N+++     +    L +L  L LS N +               +L  L LS N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 408 L-SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
           L S+     +  +   L+ L +S       PD  +   +++ L+LS   IR      +  
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-----VVKT 427

Query: 467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP--FLPPSLNFISVSNNKL 524
               TL  L++S+N L    L     L+ L +  N LK ++P   L P L  + +S N+L
Sbjct: 428 CIPQTLEVLDVSNNNLDSFSLFL-PRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQL 485

Query: 525 SGEIPLSFCNMSSIFYVNLSNNSLN 549
                  F  ++S+  + L  N  +
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  175 bits (445), Expect = 1e-46
 Identities = 95/564 (16%), Positives = 192/564 (34%), Gaps = 79/564 (14%)

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
           D    +F  SIP+ L   + +  LDLS+N  +      L     L+ L L +++      
Sbjct: 11  DGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 293 CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLES 351
             F +L  L  LD S+N L+   SS    L SL  + L  N       + LF +   L++
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 352 IDLRNNQLTGSIS-NSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
           + + N +    I     + L +L +L + + +L  N +      ++++  L L  +  + 
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA- 185

Query: 411 STLLPVNSSFPYLSMLSLSSCNISEFP----DFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
             L         +  L L   N++ F             ++ L    + +     N +  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLS 525
           + +  L    +        +      L   +   + +   +  +   ++  + +    L 
Sbjct: 246 LLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQT---FSK 581
            ++   +  +  +  + + N+ +  +      +  SL FLD+  N       +       
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 582 GSRLTILNLNDNQLE--GSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR 639
              L  L L+ N L         L+    L  LD+  N  +   P               
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP--------------- 403

Query: 640 SNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYI 699
            +    P           K+R L+LS+     V+ T   Q  + +   NNN         
Sbjct: 404 -DSCQWP----------EKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNN--------- 442

Query: 700 NYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNK 759
                       +   ++ + ++      + +S NK +  +P+       L  +  S N+
Sbjct: 443 ------------LDSFSLFLPRL----QELYISRNKLK-TLPDAS-LFPVLLVMKISRNQ 484

Query: 760 LTGLIPYSLENLTQLESLDLSSNK 783
           L  +     + LT L+ + L +N 
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (422), Expect = 8e-44
 Identities = 88/487 (18%), Positives = 169/487 (34%), Gaps = 34/487 (6%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           LDLS + L  S+   S    L  L+ LNL  N +    ++  F    NL  L +      
Sbjct: 79  LDLSDNHLS-SLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 117 GQIPAE-ISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFL 175
            +I     + L+ L  L++   S     +  L    +++ ++  L L+  + ++ +  F 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSL----KSIRDIHHLTLHLSESAFLLEIFA 192

Query: 176 TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY 235
             LSS+  L+L +  L       +        +     +         N    L    L 
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF 295
                        + +     D + +               +R L +        +  ++
Sbjct: 253 LSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL--NGTIPSGLF-TSPLLESI 352
           + L ++  +   N+++     S    L SL  + LS N +       S      P L+++
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 353 DLRNNQLT--GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
            L  N L         +  L NL  L +S N              + +  L+LS   +  
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM--PDSCQWPEKMRFLNLSSTGI-- 422

Query: 411 STLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD 470
             ++        L +L +S+ N+  F  FL    RLQ L +S N+++  +P+        
Sbjct: 423 -RVVK-TCIPQTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLK-TLPD---ASLFP 473

Query: 471 TLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGE 527
            L  + +S N L  +         +L+ + L +N    S P +     +++ ++ K  G 
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 533

Query: 528 IPLSFCN 534
              S   
Sbjct: 534 AKCSGSG 540

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  157 bits (398), Expect = 1e-40
 Identities = 89/566 (15%), Positives = 171/566 (30%), Gaps = 111/566 (19%)

Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
           +       D    +F+  IPS L+    ++ LDLS NK T            L  L   +
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTG-SISNS 366
           +++N     +   L SL  + LS N L+ ++ S  F     L+ ++L  N      +++ 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 367 ISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNS--SFPYLS 424
              L NL  L + +      +    FA L +L  L++   SL         S  S   + 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL---RNYQSQSLKSIRDIH 175

Query: 425 MLSLSSCNISEFPDFLRTQ-HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLT 483
            L+L     +   +        ++ L+L D  +      +      +  + +       +
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR--FQFSPLPVDEVSSPMKKLAFRGS 233

Query: 484 GIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL 543
            +    +  L  L      L   + F   +LN +   N   S         +  +  V +
Sbjct: 234 VLTDESFNELLKLLRYILELS-EVEFDDCTLNGLGDFNPSESD----VVSELGKVETVTI 288

Query: 544 SNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL 603
               +                          +   +S   ++  + + ++++        
Sbjct: 289 RRLHIPQ------------------FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 604 VNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILD 663
            +   LE LD+  N +   +                                 P L+ L 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAW-----------------------PSLQTLV 367

Query: 664 LSNNEFTGV-LPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKV 722
           LS N    +          + +                                      
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNL-------------------------------------- 389

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
               T++D+S N F   +P+       ++ LN S   +  +          LE LD+S+N
Sbjct: 390 ----TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV---KTCIPQTLEVLDVSNN 441

Query: 783 KVAGEIPWQLTSLNFLQVLNLSQNQL 808
            +       L     LQ L +S+N+L
Sbjct: 442 NLD-SFSLFLPR---LQELYISRNKL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 1e-17
 Identities = 35/276 (12%), Positives = 82/276 (29%), Gaps = 45/276 (16%)

Query: 533 CNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLND 592
            +  +    +  + S    IP  L  +++  LD+  N             + L +L L  
Sbjct: 2   LSCDASGVCDGRSRSFTS-IPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 593 NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652
           +++      +  +   LE LD+ +N ++    +W G LS L+ L L  N +   +  +  
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSL 118

Query: 653 RFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTV 712
                 L+ L + N E    +    F    ++                            
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL---------------------------- 150

Query: 713 KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT 772
                           +++     +    + +  +  +  L    ++   L+    + L+
Sbjct: 151 --------------NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 773 QLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
            +  L+L    +A      L        +     + 
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             + L  ++      +    L SL+ L+ S N L+ L       L+ L+ L+L  N    
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 787 -EIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
             +     +L  LQ L +   +    I + 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  186 bits (475), Expect = 2e-51
 Identities = 109/476 (22%), Positives = 191/476 (40%), Gaps = 36/476 (7%)

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
            T L+      LG   +  ++      L  +  L       + S+      ++ L  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL-GIKSIDGVEYLNN-LTQINF 75

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294
                    P  L NL++L  + ++ N  +   P  L+NL  L  L L NN+ T   P  
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 129

Query: 295 FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDL 354
             NLT L+ L+ S+N ++    S++S L SL  +    N +    P    T+  LE +D+
Sbjct: 130 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKPLANLTT--LERLDI 184

Query: 355 RNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
            +N+++  IS  +++L NL  L  ++N +S    +     L NL  L L+ N L     +
Sbjct: 185 SSNKVS-DISV-LAKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQL---KDI 236

Query: 415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNH 474
              +S   L+ L L++  IS     L    +L  L L  NQI   I       G   L +
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-NISPLA---GLTALTN 291

Query: 475 LNLSHNFLTGIELLPW-KNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSF 532
           L L+ N L  I  +   KNL YL L  N++    P      L  +   NNK+S     S 
Sbjct: 292 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSL 349

Query: 533 CNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLND 592
            N+++I +++  +N ++  + P    + +  L +    +  +     +  S    +    
Sbjct: 350 ANLTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

Query: 593 NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT 648
             L    P ++ +       D+  N  + T        S+   +   +  F G +T
Sbjct: 409 GAL--IAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  180 bits (460), Expect = 2e-49
 Identities = 99/448 (22%), Positives = 174/448 (38%), Gaps = 38/448 (8%)

Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
           +   L++     L   N +     + ++L Q+  L                 L  L+ ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQIN 74

Query: 306 FSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISN 365
           FSNNQL     + +  L  LV I ++ N +    P    T+  L  + L NNQ+T     
Sbjct: 75  FSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTN--LTGLTLFNNQITDID-- 128

Query: 366 SISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSM 425
            +  L NL  L LSSN +S    +   + L +L  L   +    L  L    ++   L  
Sbjct: 129 PLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTDLKPL----ANLTTLER 181

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
           L +SS  +S+    L     L+ L  ++NQI    P  +  +    L+ L+L+ N L  I
Sbjct: 182 LDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTN--LDELSLNGNQLKDI 236

Query: 486 ELL-PWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL 543
             L    NL  LDL +N +    P      L  + +  N++S   PL+   ++++  + L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 294

Query: 544 SNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL 603
           + N L   I P     +L +L +  NN     P   S  ++L  L   +N++     L+ 
Sbjct: 295 NENQLED-ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLA- 350

Query: 604 VNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILD 663
            N + +  L  G+N+I+   P  L  L+ +  L L    +               + I +
Sbjct: 351 -NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY-----KANVSIPN 402

Query: 664 LSNNEFTGVLPTRYFQNFQAMMHGNNNS 691
              N    ++      +  +    +   
Sbjct: 403 TVKNVTGALIAPATISDGGSYTEPDITW 430

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  179 bits (456), Expect = 7e-49
 Identities = 108/521 (20%), Positives = 194/521 (37%), Gaps = 90/521 (17%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
                   L  ++ +  +    + L ++ +L                     +  +    
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL---------------GIKSI---- 61

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP 221
                        +  L++LT ++  N  L    P  +  L  L +++++ N+ +  + P
Sbjct: 62  -----------DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP 107

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
                                    L NL+ LT L L  N  +   P  L NL  L  L+
Sbjct: 108 -------------------------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
           LS+N  +       + LT L  L F N   +      ++ L +L  + +S N +  +  S
Sbjct: 141 LSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV--SDIS 193

Query: 342 GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGL 401
            L     LES+   NNQ++      +  L NL +LSL+ N L         A L NL  L
Sbjct: 194 VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT---LASLTNLTDL 248

Query: 402 DLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIP 461
           DL++N +   + L   S    L+ L L +  IS           L  L+L++NQ+    P
Sbjct: 249 DLANNQI---SNLAPLSGLTKLTELKLGANQISNISPLAGLTA-LTNLELNENQLEDISP 304

Query: 462 NWIWNVGKDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSLKGSIPF-LPPSLNFISV 519
             I N+    L +L L  N ++ I  +     L+ L   +N +          ++N++S 
Sbjct: 305 --ISNLKN--LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 360

Query: 520 SNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF 579
            +N++S   PL+  N++ I  + L++ +         AN S+      +       P T 
Sbjct: 361 GHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL-IAPATI 417

Query: 580 SKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
           S G   T  ++  N        + V+ +F + + +G     
Sbjct: 418 SDGGSYTEPDITWNLPSY---TNEVSYTFSQPVTIGKGTTT 455

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  166 bits (422), Expect = 2e-44
 Identities = 102/564 (18%), Positives = 187/564 (33%), Gaps = 106/564 (18%)

Query: 253 LTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
           L    ++ +     I  T + L +     L     T  +     +L Q++ L      + 
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVN 372
                 V  L++L  I  S N L    P    T   L  I + NNQ+       ++ L N
Sbjct: 60  SI--DGVEYLNNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADITP--LANLTN 113

Query: 373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN 432
           L  L+L +N ++    +     L NL  L+LS N++   + +   S    L  LS  +  
Sbjct: 114 LTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTI---SDISALSGLTSLQQLSFGNQV 167

Query: 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-K 491
               P  L     L+ LD+S N++     + +  +    L  L  ++N ++ I  L    
Sbjct: 168 TDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTN--LESLIATNNQISDITPLGILT 221

Query: 492 NLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           NL  L L  N LK         +L  + ++NN++S   PLS   ++ +  + L  N ++ 
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN 279

Query: 551 MIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLE 610
           + P                          +  + LT L LN+NQLE   P+S  N   L 
Sbjct: 280 ISP-------------------------LAGLTALTNLELNENQLEDISPIS--NLKNLT 312

Query: 611 VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
            L +  N I+   P  + +L++LQ L   +N+     + +        +  L   +N+ +
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLA----NLTNINWLSAGHNQIS 366

Query: 671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID 730
            + P                                                    T + 
Sbjct: 367 DLTPLANLTRI---------------------------------------------TQLG 381

Query: 731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPW 790
           L+   +          ++    +      L    P ++ +       D++ N        
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNL-PSYTNE 438

Query: 791 QLTSLNFLQVLNLSQNQLVGPIPQ 814
              + +    +        G + Q
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  165 bits (419), Expect = 7e-44
 Identities = 99/434 (22%), Positives = 176/434 (40%), Gaps = 45/434 (10%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
            VT L          I S   +  L +L  +N + N    + I+P       L  + ++ 
Sbjct: 47  QVTTLQAD----RLGIKSIDGVEYLNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNN 99

Query: 113 SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
           +  +   P  +++L+ L  L L  N    +D       ++NL  L  L L+S  +S    
Sbjct: 100 NQIADITP--LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTIS--DI 149

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232
           S L+ L+SL  L  GN   Q +  + +  L  L+ L +S NK ++ +      ++ L  +
Sbjct: 150 SALSGLTSLQQLSFGN---QVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTN-LESL 204

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
                      P  LG L+ L  L L+ N        TL++L  L  LDL+NN+ +   P
Sbjct: 205 IATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

Query: 293 CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESI 352
              + LT+L+ L    NQ++    S ++ L +L  + L+ N L    P     +  L  +
Sbjct: 261 --LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNLKN--LTYL 314

Query: 353 DLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLST 412
            L  N ++      +S L  L  L   +N +S    +   A L N+  L   HN +   +
Sbjct: 315 TLYFNNISDIS--PVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQI---S 366

Query: 413 LLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGI-PNWIWNVGKDT 471
            L   ++   ++ L L+    +  P  +  +  + I +   N     I P  I + G  +
Sbjct: 367 DLTPLANLTRITQLGLNDQAWTNAP--VNYKANVSIPNTVKNVTGALIAPATISDGG--S 422

Query: 472 LNHLNLSHNFLTGI 485
               +++ N  +  
Sbjct: 423 YTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (341), Expect = 8e-34
 Identities = 83/469 (17%), Positives = 159/469 (33%), Gaps = 102/469 (21%)

Query: 347 PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
           PL  +   ++  +   I    + L   +   L   N++  V      +L  +  L     
Sbjct: 2   PLGSATITQDTPIN-QIFT-DTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRL 56

Query: 407 SLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
            +     +        L+ ++ S+  +++          L  + +++NQI    P  + N
Sbjct: 57  GI---KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK-LVDILMNNNQIADITP--LAN 110

Query: 467 VGKDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKL 524
           +    L  L L +N +T I+ L    NL  L+L SN++          SL  +S  N   
Sbjct: 111 LTN--LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT 168

Query: 525 SGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
                    N++++  +++S+N +                         S     +K + 
Sbjct: 169 D---LKPLANLTTLERLDISSNKV-------------------------SDISVLAKLTN 200

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
           L  L   +NQ+    PL     + L+ L +  N++       L +L+ L  L L +N+  
Sbjct: 201 LESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

Query: 645 GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNE 704
                S       KL  L L  N+ + + P                              
Sbjct: 257 NLAPLS----GLTKLTELKLGANQISNISPLAGLTAL----------------------- 289

Query: 705 YYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLI 764
                                 T ++L+ N+ +   P  +  L +L  L    N ++ + 
Sbjct: 290 ----------------------TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325

Query: 765 PYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813
           P  + +LT+L+ L   +NKV       L +L  +  L+   NQ+    P
Sbjct: 326 P--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 3e-24
 Identities = 67/292 (22%), Positives = 121/292 (41%), Gaps = 24/292 (8%)

Query: 72  SSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS 131
           S L  L +L+ L    N  +            NL  L+L+ +         ++ L+ L  
Sbjct: 193 SVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 247

Query: 132 LDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGL 191
           LDL+ N    L        +  L +L EL L +  +S   P  L  L++LT+L+L    L
Sbjct: 248 LDLANNQISNLAP------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299

Query: 192 QGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLS 251
           +   P  I  L NL  L L +N  ++ + P  + +  L+ +  Y      S  +SL NL+
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNN-ISDISPVSSLTK-LQRLFFYNNKV--SDVSSLANLT 353

Query: 252 QLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311
            + +L   +N  S   P  L+NL ++  L L++  +T       AN++  + +      L
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

Query: 312 NGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSI 363
             P  +++S   S     +++N  +       +T     +I       +G++
Sbjct: 412 IAP--ATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 1e-14
 Identities = 51/297 (17%), Positives = 92/297 (30%), Gaps = 65/297 (21%)

Query: 520 SNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF 579
            +  ++     +   ++      L   ++            +  L               
Sbjct: 10  QDTPINQIFTDT--ALAEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGI--KSIDGV 64

Query: 580 SKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR 639
              + LT +N ++NQL    PL   N + L  + + NN+I    P  L  L+ L  L L 
Sbjct: 65  EYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120

Query: 640 SNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYI 699
           +N+                L  L+LS+N  + +       + Q                 
Sbjct: 121 NNQITDIDPLK----NLTNLNRLELSSNTISDISALSGLTSLQ----------------- 159

Query: 700 NYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNK 759
                                        +            + +  L +L+ L+ S NK
Sbjct: 160 ----------------------------QLSFGNQV---TDLKPLANLTTLERLDISSNK 188

Query: 760 LTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGK 816
           ++ +    L  LT LESL  ++N+++   P  L  L  L  L+L+ NQL        
Sbjct: 189 VSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS 241

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 64/234 (27%)

Query: 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641
           G   +     D  +      +    +      +G   +  T       L ++  L     
Sbjct: 1   GPLGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL 56

Query: 642 RFHG--PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYI 699
                  + Y         L  ++ SNN+ T + P +                       
Sbjct: 57  GIKSIDGVEY------LNNLTQINFSNNQLTDITPLKNLTKLV----------------- 93

Query: 700 NYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNK 759
                                        I ++ N+     P  +  L +L GL   +N+
Sbjct: 94  ----------------------------DILMNNNQIADITP--LANLTNLTGLTLFNNQ 123

Query: 760 LTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813
           +T + P  L+NLT L  L+LSSN ++      L+ L  LQ L+   NQ+    P
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  180 bits (458), Expect = 3e-49
 Identities = 108/508 (21%), Positives = 189/508 (37%), Gaps = 79/508 (15%)

Query: 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSY 212
           +   LQE + +S +++ E+P    N+ S T         + + P        +    L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
             +                ++L       S+P    +   L  L  S N+ +  +P    
Sbjct: 68  CLDRQ-----------AHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQ 111

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332
           +L+ L   + +    +   P        L +L  SNNQL       +     L  I +  
Sbjct: 112 SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDN 162

Query: 333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF 392
           NSL   +P      P LE I   NNQL   +   +  L  L  +   +N+L       + 
Sbjct: 163 NSLK-KLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-----KLP 211

Query: 393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLS 452
               +L  +   +N L     LP   + P+L+ +   +  +   PD   +   L+ L++ 
Sbjct: 212 DLPLSLESIVAGNNIL---EELPELQNLPFLTTIYADNNLLKTLPDLPPS---LEALNVR 265

Query: 453 DNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPP 512
           DN +   +P    +     L  L++S N  +G+  LP  NL YL+  SN ++ S+  LPP
Sbjct: 266 DNYLT-DLPELPQS-----LTFLDVSENIFSGLSELP-PNLYYLNASSNEIR-SLCDLPP 317

Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-------------- 558
           SL  ++VSNNKL  E+P     +  +     S N L   +P    N              
Sbjct: 318 SLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLKQLHVEYNPLREF 372

Query: 559 -SSLWFL-DMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616
                 + D+RMN+    +P+       L  L++  N L    P    +   +E L + +
Sbjct: 373 PDIPESVEDLRMNSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPES---VEDLRMNS 425

Query: 617 NRINGTFPAWLGALSELQVLILRSNRFH 644
            R+   +        +L+  +   +  H
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  165 bits (419), Expect = 5e-44
 Identities = 96/506 (18%), Positives = 174/506 (34%), Gaps = 91/506 (17%)

Query: 75  FSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLS------- 127
            S   LQ      ++   + +        +      + S +    P              
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 128 ------KLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
                 +   L+L+           L +L +    L+ LV +   ++ E+P    +L SL
Sbjct: 66  RDCLDRQAHELELNNLG--------LSSLPELPPHLESLVASCNSLT-ELPELPQSLKSL 116

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMG 241
              +     L           P L+ L +S N+ L  + P++  SS L+ +D+   N + 
Sbjct: 117 LVDNNNLKALSDLP-------PLLEYLGVSNNQ-LEKL-PELQNSSFLKIIDVDN-NSLK 166

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            +P    +   L ++    N     +P  L NL  L  +   NN     +  +      L
Sbjct: 167 KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNN----SLKKLPDLPLSL 217

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG 361
             +   NN L       +  L  L TIY   N L  T+P      P LE++++R+N LT 
Sbjct: 218 ESIVAGNNILEEL--PELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT- 270

Query: 362 SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFP 421
            +      L  L       + LS            NL  L+ S N +     LP +    
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLS--------ELPPNLYYLNASSNEIRSLCDLPPS---- 318

Query: 422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
            L  L++S+  + E P       RL+ L  S N +   +P    N     L  L++ +N 
Sbjct: 319 -LEELNVSNNKLIELPALP---PRLERLIASFNHLA-EVPELPQN-----LKQLHVEYNP 368

Query: 482 LTGIELLPWK------------------NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNK 523
           L     +P                    NL+ L + +N L+   P +P S+  + +++ +
Sbjct: 369 LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMNSER 427

Query: 524 LSGEIPLSFCNMSSIFYVNLSNNSLN 549
           +      +      +      ++  +
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  162 bits (411), Expect = 6e-43
 Identities = 87/450 (19%), Positives = 161/450 (35%), Gaps = 70/450 (15%)

Query: 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNL-------------QQLRHL 280
           L   + +  +P    N+   T    +++ +  + P                   +Q   L
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
           +L+N   +     +      L  L  S N L   +      L SL+    +  +L+   P
Sbjct: 77  ELNNLGLS----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 341 SGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLG 400
                   LE + + NNQL   +   +     L  + + +N+L       +     +L  
Sbjct: 132 L-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEF 177

Query: 401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGI 460
           +   +N L     LP   + P+L+ +   + ++ + PD       L+ +   +N +    
Sbjct: 178 IAAGNNQL---EELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE--E 229

Query: 461 PNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVS 520
              + N+    L  +   +N L  +  LP  +L  L++R N L   +P LP SL F+ VS
Sbjct: 230 LPELQNLPF--LTTIYADNNLLKTLPDLP-PSLEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 521 NNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFS 580
            N  S  +     N+  +   N S+N +   +       SL  L++  N     +P    
Sbjct: 286 ENIFS-GLSELPPNLYYL---NASSNEIRS-LCDLP--PSLEELNVSNNKLI-ELPALPP 337

Query: 581 KGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640
           +   L  L  + N L   VP    N   L+ L V  N +   FP    ++ +L++    +
Sbjct: 338 R---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
                P            L+ L +  N   
Sbjct: 390 EVPELP----------QNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  155 bits (394), Expect = 9e-41
 Identities = 91/545 (16%), Positives = 189/545 (34%), Gaps = 100/545 (18%)

Query: 243 IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLS 302
           I     + + L       +N +  +P    N++       + +++    P       +++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 303 FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGS 362
                +                   + L+   L+ ++P        LES+    N LT  
Sbjct: 62  VSRLRDCLDR-----------QAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-E 105

Query: 363 ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPY 422
           +      L +L+  + +   LS             L  L +S+N L     LP   +  +
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDL--------PPLLEYLGVSNNQL---EKLPELQNSSF 154

Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
           L ++ + + ++ + PD       L+ +   +NQ+   +P  + N+    L  +   +N L
Sbjct: 155 LKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPE-LQNLPF--LTAIYADNNSL 207

Query: 483 TGIELLPWKNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
             +  LP  +L  +   +N L+  +P L   P L  I   NN L   +P    ++ ++  
Sbjct: 208 KKLPDLP-LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL-- 262

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
            N+ +N L   +P      SL FLD+   N    + +       L  LN + N++  S+ 
Sbjct: 263 -NVRDNYLTD-LPELP--QSLTFLDV-SENIFSGLSELPPN---LYYLNASSNEIR-SLC 313

Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFP--FPK 658
               +   LE L+V NN++    PA       L+ LI   N             P     
Sbjct: 314 DLPPS---LEELNVSNNKLI-ELPALPP---RLERLIASFNHL--------AEVPELPQN 358

Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
           L+ L +  N      P    ++ + +   ++ +                          E
Sbjct: 359 LKQLHVEYNPLR-EFPDI-PESVEDLRMNSHLA--------------------------E 390

Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
           + ++      + +  N  +   P++     S++ L  +  ++     ++ E   +LE   
Sbjct: 391 VPELPQNLKQLHVETNPLR-EFPDI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDV 446

Query: 779 LSSNK 783
              + 
Sbjct: 447 FEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (323), Expect = 1e-31
 Identities = 83/429 (19%), Positives = 151/429 (35%), Gaps = 69/429 (16%)

Query: 52  GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS 111
            H+  L  SC+ L   +P      SL  L + N      +           P L +L +S
Sbjct: 91  PHLESLVASCNSLT-ELPE--LPQSLKSLLVDNNNLKALS--------DLPPLLEYLGVS 139

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
            +    ++P E+ + S L  +D+  NS        LK L      L+ +     +   E 
Sbjct: 140 NNQLE-KLP-ELQNSSFLKIIDVDNNS--------LKKLPDLPPSLEFIAAG--NNQLEE 187

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRF 231
              L NL  LT++   N  L+  +P+      +L++++   N       P++     L  
Sbjct: 188 LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNI--LEELPELQNLPFLTT 241

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
           +     N + ++P    +L  L   D    +            Q L  LD+S N F+G  
Sbjct: 242 IYADN-NLLKTLPDLPPSLEALNVRDNYLTDLP-------ELPQSLTFLDVSENIFSG-- 291

Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLES 351
             +      L +L+ S+N++     S      SL  + +S N L   +P+       LE 
Sbjct: 292 --LSELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPALPPR---LER 341

Query: 352 IDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLS 411
           +    N L   +        NL  L +  N L            +++  L ++ +   + 
Sbjct: 342 LIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-----EFPDIPESVEDLRMNSHLAEVP 392

Query: 412 TLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDT 471
            L         L  L + +  + EFPD       ++ L ++  ++      +      D 
Sbjct: 393 ELPQ------NLKQLHVETNPLREFPDIP---ESVEDLRMNSERVV-DPYEFAHETT-DK 441

Query: 472 LNHLNLSHN 480
           L      H+
Sbjct: 442 LEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 2e-30
 Identities = 95/503 (18%), Positives = 163/503 (32%), Gaps = 120/503 (23%)

Query: 322 LHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSN 381
              L       ++L   +P                ++   +      E   +    L   
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 382 NLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLR 441
                         +    L+L++  L   + LP     P+L  L  S  +++E P+  +
Sbjct: 69  LD------------RQAHELELNNLGL---SSLP--ELPPHLESLVASCNSLTELPELPQ 111

Query: 442 TQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI-ELLPWKNLRYLDLRS 500
           +   L + + +   +    P          L +L +S+N L  + EL     L+ +D+ +
Sbjct: 112 SLKSLLVDNNNLKALSDLPPL---------LEYLGVSNNQLEKLPELQNSSFLKIIDVDN 162

Query: 501 NSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS 560
           NSLK  +P LPPSL FI+  NN+L  E+P    N+  +  +   NNSL   +P    +  
Sbjct: 163 NSLK-KLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDLPLS-- 216

Query: 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
                                   L  +   +N L       L N  FL  +   NN + 
Sbjct: 217 ------------------------LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK 250

Query: 621 GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQN 680
            T P    +L  L V                       L  LD+S N F+G+  +    N
Sbjct: 251 -TLPDLPPSLEALNVRDNYLTDLPELP---------QSLTFLDVSENIFSGL--SELPPN 298

Query: 681 FQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRI 740
              +   +N                    L     ++E          +++S NK    +
Sbjct: 299 LYYLNASSNEIRS----------------LCDLPPSLE---------ELNVSNNKLI-EL 332

Query: 741 PEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG--EIPWQLTSLNF- 797
           P +  +L     L  S N L  +     E    L+ L +  N +    +IP  +  L   
Sbjct: 333 PALPPRLER---LIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385

Query: 798 ------------LQVLNLSQNQL 808
                       L+ L++  N L
Sbjct: 386 SHLAEVPELPQNLKQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 1e-23
 Identities = 90/447 (20%), Positives = 163/447 (36%), Gaps = 101/447 (22%)

Query: 363 ISNSISELVNLIDLSLSSNNLSGNVELYM-FAELKNLLGLDLSHNSLSLSTLLPVNSSFP 421
           I+        L +    S+NL+   E+ +    +K+      + +        P N    
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEW-ERNAPPGNGEQR 58

Query: 422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
            +++  L  C             +   L+L++  +   +P    +     L  L  S N 
Sbjct: 59  EMAVSRLRDCLDR----------QAHELELNNLGLSS-LPELPPH-----LESLVASCNS 102

Query: 482 LTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYV 541
           LT +  LP ++L+ L + +N+LK ++  LPP L ++ VSNN+L  ++P    N S +  +
Sbjct: 103 LTELPELP-QSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKII 158

Query: 542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
           ++ NNSL   +P    +                          L  +   +NQLE  +P 
Sbjct: 159 DVDNNSLK-KLPDLPPS--------------------------LEFIAAGNNQLE-ELP- 189

Query: 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661
            L N  FL  +   NN +    P        L+ ++  +N               P L  
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILEELPELQN----LPFLTT 241

Query: 662 LDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEK 721
           +   NN    +       + +A+   +N                            ++ +
Sbjct: 242 IYADNNLLKTLPDL--PPSLEALNVRDNY-------------------------LTDLPE 274

Query: 722 VLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSS 781
           +    T +D+S N F   + E+     +L  LN S N++  L     +    LE L++S+
Sbjct: 275 LPQSLTFLDVSENIFS-GLSEL---PPNLYYLNASSNEIRSLC----DLPPSLEELNVSN 326

Query: 782 NKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           NK+  E+P        L+ L  S N L
Sbjct: 327 NKLI-ELPALPPR---LERLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 3e-14
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 36/249 (14%)

Query: 73  SLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSL 132
            L +LP L  +    N      +       P+L  LN+  +  +  +P     L+ L   
Sbjct: 232 ELQNLPFLTTIYADNNLL--KTLPDLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 133 DLSGNS---------QLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTS 183
           +   +           L   +  +++L      L+EL +++  +  E+P+    L     
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ER 341

Query: 184 LDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSI 243
           L      L   +PE      NL+ L + YN  L           P    DL   + +  +
Sbjct: 342 LIASFNHLA-EVPELP---QNLKQLHVEYNP-LREFPD-----IPESVEDLRMNSHLAEV 391

Query: 244 PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303
           P    NL     L +  N      P    +++    L +++ +             +L  
Sbjct: 392 PELPQNL---KQLHVETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLED 444

Query: 304 LDFSNNQLN 312
             F ++  +
Sbjct: 445 DVFEHHHHH 453

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  174 bits (443), Expect = 5e-47
 Identities = 61/421 (14%), Positives = 133/421 (31%), Gaps = 46/421 (10%)

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
            +   +   +   ++ +   +   +  LDLS N  S    + L+   +L  L+LS+N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
             +     +L+ L  LD +NN +       +    S+ T++ + N+++  +         
Sbjct: 72  ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQG-- 121

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
            ++I L NN++T            +  L L  N +       + A    L  L+L +N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 409 SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
                +     F  L  L LSS  ++      ++   +  + L +N++   I        
Sbjct: 182 ---YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK------ 231

Query: 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP--FLPPSLNFISVSNNKLSG 526
                             L   +NL + DLR N         F   +    +V+   +  
Sbjct: 232 -----------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 527 EIPLSFCNMSSIFYVNLSNNSLNGMIPPC------LANSSLWFLDMRMNNFHGSIPQTFS 580
               +    +     +        +  P       L       L  + +     +     
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET-ERLECERE 333

Query: 581 KGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640
             +R   ++    Q    +    +       L+     ++        A +EL   + ++
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 641 N 641
            
Sbjct: 394 V 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  170 bits (433), Expect = 1e-45
 Identities = 69/498 (13%), Positives = 152/498 (30%), Gaps = 26/498 (5%)

Query: 147 LKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQ 206
           +  + QN N  +   +    +   + S   +  ++  LDL    L      ++     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 207 NLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGH 266
            L LS N  L       + S+ LR +DL            L     +  L  + NN S  
Sbjct: 62  LLNLSSNV-LYETLDLESLST-LRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-R 113

Query: 267 IPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSL 325
           +    S  Q  +++ L+NNK T          +++ +LD   N+++    +   +   +L
Sbjct: 114 VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 326 VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSG 385
             + L YN +   +   +     L+++DL +N+L   +         +  +SL +N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 386 NVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHR 445
            +E       +NL   DL  N     TL    S    +  ++  +       +       
Sbjct: 228 LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT-V 285

Query: 446 LQILDLSDNQIR---GGIPNWIWNVGKDTLNHLNLSHNFLTGIE--LLPWKNLRYLDLRS 500
             +                + +  + +     L+   +    +E         R +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 501 NSLK---GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA 557
              +     +     +   +      L  ++       + +            +      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 558 NSSLWFLDMRMNNF-HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616
            S L  L   +  +    + Q   + + +   ++  ++       +          D+  
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

Query: 617 NRINGTFPAWLGALSELQ 634
              N T    +     L 
Sbjct: 466 ASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  153 bits (388), Expect = 8e-40
 Identities = 78/572 (13%), Positives = 166/572 (29%), Gaps = 133/572 (23%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
           +I     N ++     ++ ++    + S   +   ++ LDLS N  +       A  T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG 361
             L+ S+N L       +  L +L T+ L+ N +       L   P +E++   NN ++ 
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 362 SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFP 421
            +S S        ++ L++N ++  +          +  LDL  N +             
Sbjct: 113 RVSCSR--GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID------------ 157

Query: 422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
                         F +   +   L+ L+L  N I   +   +       L  L+LS N 
Sbjct: 158 -----------TVNFAELAASSDTLEHLNLQYNFIYD-VKGQV---VFAKLKTLDLSSNK 202

Query: 482 LTGI--ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF 539
           L  +  E      + ++ LR+N L                        I  +     ++ 
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLV----------------------LIEKALRFSQNLE 240

Query: 540 YVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599
           + +L  N  +                       G++   FSK  R+    +    ++   
Sbjct: 241 HFDLRGNGFH----------------------CGTLRDFFSKNQRV--QTVAKQTVKKLT 276

Query: 600 PLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT--RFPFP 657
             +   C+   +   G          +   L  L+          G  T  +   R    
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 658 KLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNM 717
           + R +D    ++  V+                                            
Sbjct: 337 RQREIDALKEQYRTVID------------------------------------------- 353

Query: 718 EMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777
           ++        T++        ++         L G          L  ++ E  + L+ L
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLL 412

Query: 778 DLSSNKVA-GEIPWQLTSLNFLQVLNLSQNQL 808
                +     +  Q    N ++  ++ Q++ 
Sbjct: 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (341), Expect = 1e-33
 Identities = 56/424 (13%), Positives = 141/424 (33%), Gaps = 36/424 (8%)

Query: 391 MFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEF-PDFLRTQHRLQ 447
           +           ++ +SL        +   S   +  L LS   +S+     L    +L+
Sbjct: 5   IKQNGNRYKIEKVTDSSL---KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSI 507
           +L+LS N +   +   + ++    L  L+L++N++  + + P  ++  L   +N++    
Sbjct: 62  LLNLSSNVLYETLD--LESLST--LRTLDLNNNYVQELLVGP--SIETLHAANNNISRVS 115

Query: 508 PFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS--SLWFLD 565
                    I ++NNK++    L     S + Y++L  N ++ +    LA S  +L  L+
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 566 MRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA 625
           ++ N  +  +       ++L  L+L+ N+L   +     + + +  + + NN++      
Sbjct: 176 LQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 626 WLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMM 685
            L     L+   LR N FH   T         +++ +     +                 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 686 HGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVG 745
           +G     +    + +                            +   G++ + R+     
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHA----------------LLSGQGSETE-RLECERE 333

Query: 746 KLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQ 805
                + ++    +   +I           +L+     +  ++     +   L       
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 806 NQLV 809
              +
Sbjct: 394 VGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  130 bits (329), Expect = 3e-32
 Identities = 65/499 (13%), Positives = 135/499 (27%), Gaps = 98/499 (19%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           LDLS + L     +   L     L++LNL+ N       +        L  L+L+ +   
Sbjct: 39  LDLSGNPLSQISAA--DLAPFTKLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNYVQ 93

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLT 176
                E+     + +L  + N               N++ +                  +
Sbjct: 94  -----ELLVGPSIETLHAANN---------------NISRVSC----------------S 117

Query: 177 NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYG 236
                 ++ L N  +      +      +Q L L  N+ + +V                 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV----------------- 159

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
                +      +   L +L+L YN     +        +L+ LDLS+NK    +   F 
Sbjct: 160 -----NFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN 356
           +   ++++   NN+L   I  ++    +L    L  N  +       F+        +  
Sbjct: 212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAK 269

Query: 357 NQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV 416
             +      +  E          +         +       L+ L    ++L        
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF----ADRLIALKRKEHAL-------- 317

Query: 417 NSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLN 476
                    LS               Q R + +D    Q R  + + +    K     L 
Sbjct: 318 ---------LSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTL-RKQAKITLE 366

Query: 477 LSHNFLTGIELLPWKNLRYLD------LRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPL 530
                L        +    LD      +    L+ +     P     ++        +  
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

Query: 531 SFCNMSSIFYVNLSNNSLN 549
                ++I   ++  +   
Sbjct: 427 QSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 740 IPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQ 799
           I E+    N  K    + + L   +    ++   ++ LDLS N ++      L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 800 VLNLSQNQLVGPIP 813
           +LNLS N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/257 (10%), Positives = 65/257 (25%), Gaps = 6/257 (2%)

Query: 71  DSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLV 130
           + +L    +L+  +L  N F+   +   F++   +    ++  +            +   
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPT 287

Query: 131 SLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCG 190
                      L  P    L+    +   L+      +  +     N +    +D     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 191 LQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN 249
            + ++ + +         L       L         +       L        +  +   
Sbjct: 348 YR-TVIDQVTLRKQAKITLEQKKKA-LDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 250 LSQLTYLDLSYNNFS-GHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
            S L  L      +   ++         +R  D+  +K T                D + 
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

Query: 309 NQLNGPISSSVSRLHSL 325
              N  +   V R  +L
Sbjct: 466 ASANATLQELVVREQNL 482

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  164 bits (417), Expect = 8e-45
 Identities = 67/376 (17%), Positives = 140/376 (37%), Gaps = 49/376 (13%)

Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
              +L++     L   + +     T   L+ +  L ++  K           LT L +L+
Sbjct: 17  PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLN 72

Query: 306 FSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISN 365
            + NQ+     S +S L  L  +Y+  N +  T  S L     L  + L  + ++     
Sbjct: 73  LNGNQITDI--SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDIS-- 126

Query: 366 SISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSM 425
            ++ L  +  L+L +N+   ++     + +  L  L ++ + +              ++ 
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKV---------KDVTPIAN 175

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
           L+                  L  L L+ NQI    P  + ++    L++     N +T I
Sbjct: 176 LT-----------------DLYSLSLNYNQIEDISP--LASLTS--LHYFTAYVNQITDI 214

Query: 486 ELLPW-KNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL 543
             +     L  L + +N +    P      L ++ +  N++S  I  +  +++ +  +N+
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-IN-AVKDLTKLKMLNV 272

Query: 544 SNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL 603
            +N ++  I      S L  L +  N       +     + LT L L+ N +    PL+ 
Sbjct: 273 GSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA- 330

Query: 604 VNCSFLEVLDVGNNRI 619
            + S ++  D  N  I
Sbjct: 331 -SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  161 bits (411), Expect = 7e-44
 Identities = 70/392 (17%), Positives = 144/392 (36%), Gaps = 51/392 (13%)

Query: 253 LTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
              L       +   P   ++L +     L     T  +      L  ++ L  +  ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVN 372
                 +  L +L  + L+ N +    P        L ++ +  N++T  IS ++  L N
Sbjct: 58  SI--QGIEYLTNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKIT-DIS-ALQNLTN 111

Query: 373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN 432
           L +L L+ +N+S    +   A L  +  L+L  N     + L   S+   L+ L+++   
Sbjct: 112 LRELYLNEDNISD---ISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESK 166

Query: 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-K 491
           + +          L  L L+ NQI    P  + ++    L++     N +T I  +    
Sbjct: 167 VKDVTPI-ANLTDLYSLSLNYNQIEDISP--LASLTS--LHYFTAYVNQITDITPVANMT 221

Query: 492 NLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
            L  L + +N +    P      L ++ +  N++S  I  +  +++ +  +N+ +N ++ 
Sbjct: 222 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-IN-AVKDLTKLKMLNVGSNQISD 279

Query: 551 MIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLE 610
           +                            +  S+L  L LN+NQL       +   + L 
Sbjct: 280 ISV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 611 VLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
            L +  N I    P  L +LS++      +  
Sbjct: 315 TLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  161 bits (410), Expect = 7e-44
 Identities = 74/368 (20%), Positives = 149/368 (40%), Gaps = 30/368 (8%)

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP 221
           L ++           +L+      L    +   + +    L ++  L+++    + S+  
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGE-KVASIQG 61

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
               ++ L +++L G       P  L NL +LT L +  N  +    S L NL  LR L 
Sbjct: 62  IEYLTN-LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELY 116

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
           L+ +  +   P   ANLT++  L+   N     + S +S +  L  + ++ + +    P 
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 342 GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGL 401
              T   L S+ L  NQ+       ++ L +L   +   N ++    +   A +  L  L
Sbjct: 174 ANLTD--LYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITD---ITPVANMTRLNSL 226

Query: 402 DLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIP 461
            + +N ++  + L   ++   L+ L + +  IS+    ++   +L++L++  NQI   I 
Sbjct: 227 KIGNNKITDLSPL---ANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQIS-DIS 281

Query: 462 NWIWNVGKDTLNHLNLSHNFLTGI---ELLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFI 517
             + N+ +  LN L L++N L       +    NL  L L  N +    P      ++  
Sbjct: 282 V-LNNLSQ--LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338

Query: 518 SVSNNKLS 525
             +N  + 
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  158 bits (403), Expect = 7e-43
 Identities = 87/357 (24%), Positives = 146/357 (40%), Gaps = 33/357 (9%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
                 L  + +   +        L  +  L +A           G     NL +LNL+ 
Sbjct: 23  EGIRAVLQKASVTDVVT----QEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNG 75

Query: 113 SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
           +  +   P  +S+L KL +L +  N    +        +QNL  L+EL LN  + +    
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKITDISA------LQNLTNLRELYLN--EDNISDI 125

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232
           S L NL+ + SL+LG      S    +  +  L  L ++ +K +  V P  N +  L  +
Sbjct: 126 SPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTD-LYSL 182

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
            L         P  L +L+ L Y     N  +   P  ++N+ +L  L + NNK T   P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

Query: 293 CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESI 352
              ANL+QL++L+   NQ++    ++V  L  L  + +  N ++        +   L S+
Sbjct: 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQ--LNSL 292

Query: 353 DLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409
            L NNQL       I  L NL  L LS N+++    +   A L  +   D ++  + 
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (350), Expect = 7e-36
 Identities = 74/439 (16%), Positives = 157/439 (35%), Gaps = 98/439 (22%)

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
             ++      +   I    ++L   I   L   +++  V      EL+++  L ++   +
Sbjct: 2   AATLATLPAPIN-QIFP-DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 409 SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
                +        L  L+L+   I++          L  L +  N+I   I        
Sbjct: 57  ---ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK-LTNLYIGTNKITD-ISAL---QN 108

Query: 469 KDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLS 525
              L  L L+ + ++ I  L     +  L+L +N     +  L     LN+++V+ +K+ 
Sbjct: 109 LTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRL 585
              P++  N++ ++ ++L+ N +  + P                          +  + L
Sbjct: 169 DVTPIA--NLTDLYSLSLNYNQIEDISP-------------------------LASLTSL 201

Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645
                  NQ+    P++  N + L  L +GNN+I    P  L  LS+L  L + +N+   
Sbjct: 202 HYFTAYVNQITDITPVA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 646 PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY 705
                       KL++L++ +N+ + +       N   +                     
Sbjct: 258 INAVK----DLTKLKMLNVGSNQISDISV---LNNLSQL--------------------- 289

Query: 706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP 765
                                 ++ L+ N+      EV+G L +L  L  S N +T + P
Sbjct: 290 ---------------------NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 766 YSLENLTQLESLDLSSNKV 784
             L +L++++S D ++  +
Sbjct: 329 --LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (333), Expect = 1e-33
 Identities = 68/389 (17%), Positives = 145/389 (37%), Gaps = 48/389 (12%)

Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
            + L+     I++               L    +   +         +++  L ++   +
Sbjct: 2   AATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVTQ----EELESITKLVVAGEKV 56

Query: 483 TGIE-LLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
             I+ +    NL YL+L  N +    P      L  + +  NK++     +  N++++  
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRE 114

Query: 541 VNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599
           + L+ ++++ + P  LAN + ++ L++  N+   S     S  + L  L + +++++   
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 600 PLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKL 659
           P++  N + L  L +  N+I    P  L +L+ L       N+       +       +L
Sbjct: 172 PIA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVA----NMTRL 223

Query: 660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEM 719
             L + NN+ T + P         +  G N                   I  +  V    
Sbjct: 224 NSLKIGNNKITDLSPLANLSQLTWLEIGTNQ------------------ISDINAV---- 261

Query: 720 EKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDL 779
            K L     +++  N+       V+  L+ L  L  ++N+L       +  LT L +L L
Sbjct: 262 -KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 780 SSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           S N +    P  L SL+ +   + +   +
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 43/273 (15%), Positives = 83/273 (30%), Gaps = 63/273 (23%)

Query: 542 NLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
                 +N + P   A+ +      ++  +    +     +   +T L +   ++     
Sbjct: 6   ATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG 61

Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLR 660
           +     + LE L++  N+I    P  L  L +L  L + +N+                LR
Sbjct: 62  IE--YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ----NLTNLR 113

Query: 661 ILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME 720
            L L+ +  + + P                                              
Sbjct: 114 ELYLNEDNISDISPLANLTKM--------------------------------------- 134

Query: 721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLS 780
                  +++L  N         +  +  L  L  + +K+  + P  + NLT L SL L+
Sbjct: 135 ------YSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185

Query: 781 SNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813
            N++    P  L SL  L       NQ+    P
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 40/231 (17%)

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
              L      +    P +  + +      +    +          L  +  L++   +  
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 645 G--PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
               I Y         L  L+L+ N+ T + P         +  G N             
Sbjct: 58  SIQGIEY------LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK------------ 99

Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
                 I  +  +       L     + L+ +      P  +  L  +  LN   N    
Sbjct: 100 ------ITDISALQN-----LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS 146

Query: 763 LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813
            +   L N+T L  L ++ +KV    P  + +L  L  L+L+ NQ+    P
Sbjct: 147 DLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  157 bits (398), Expect = 1e-42
 Identities = 53/343 (15%), Positives = 115/343 (33%), Gaps = 44/343 (12%)

Query: 194 SIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL 253
           +I E        +   ++ + +L                          + +   +   +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDS-SLKQA-----------------------LASLRQSAWNV 36

Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
             LDLS N  S    + L+   +L  L+LS+N    +      +L+ L  LD +NN +  
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYV-- 92

Query: 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNL 373
                +    S+ T++ + N+++  +          ++I L NN++T            +
Sbjct: 93  ---QELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRV 146

Query: 374 IDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI 433
             L L  N +       + A    L  L+L +N +     +     F  L  L LSS  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKL 203

Query: 434 SEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL----LP 489
           +      ++   +  + L +N++   I   +       L H +L  N      L      
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS--QNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 490 WKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSF 532
            + ++ +  ++            ++  +         ++P  F
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (367), Expect = 2e-38
 Identities = 56/285 (19%), Positives = 107/285 (37%), Gaps = 16/285 (5%)

Query: 147 LKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQ 206
           +  + QN N  +   +    +   + S   +  ++  LDL    L      ++     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 207 NLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGH 266
            L LS N  L       + S+ LR +DL            L     +  L  + NN S  
Sbjct: 62  LLNLSSNV-LYETLDLESLST-LRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-R 113

Query: 267 IPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSL 325
           +    S  Q  +++ L+NNK T          +++ +LD   N+++    +   +   +L
Sbjct: 114 VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 326 VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSG 385
             + L YN +   +   +     L+++DL +N+L   +         +  +SL +N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 386 NVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS 430
            +E       +NL   DL  N     TL    S    +  ++  +
Sbjct: 228 LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (338), Expect = 1e-34
 Identities = 66/382 (17%), Positives = 123/382 (32%), Gaps = 75/382 (19%)

Query: 76  SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS 135
           +    +I  +  +      ++       N+  L+LS +  S    A+++  +KL  L+LS
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSI 195
            N                L E  +               L +LS+L +LDL N  +Q   
Sbjct: 67  SN---------------VLYETLD---------------LESLSTLRTLDLNNNYVQ--- 93

Query: 196 PENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255
              +   P+++ L  + N N++ V                          S         
Sbjct: 94  --ELLVGPSIETLHAANN-NISRV--------------------------SCSRGQGKKN 124

Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGP 314
           + L+ N  +           ++++LDL  N+        + A+   L  L+   N +   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183

Query: 315 ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI 374
           +   V     L T+ LS N L   +     ++  +  I LRNN+L   I  ++    NL 
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS 434
              L  N          F++ + +  +        L+       + P L       C   
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 435 EFPDFLRTQHRLQILDLSDNQI 456
             P   R      ++ L  +  
Sbjct: 300 PAPFADR------LIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (300), Expect = 1e-29
 Identities = 51/342 (14%), Positives = 121/342 (35%), Gaps = 59/342 (17%)

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
            +   + ++ L  ++++      N+ +L LS N LS  +     A    L  L+LS N  
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN-- 68

Query: 409 SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
                                   + E  D       L+ LDL++N ++  +        
Sbjct: 69  -----------------------VLYETLDLESLST-LRTLDLNNNYVQE-LLVGP---- 99

Query: 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP---PSLNFISVSNNKLS 525
             ++  L+ ++N ++ +     +  + + L +N +             + ++ +  N++ 
Sbjct: 100 --SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 526 G-EIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
                    +  ++ ++NL  N +   +   +  + L  LD+  N     +   F   + 
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN-GTFPAWLGALSELQVLILRSNRF 643
           +T ++L +N+L   +  +L     LE  D+  N  + GT   +      +Q +  ++ + 
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 644 ----------------HGPITYSVTRFPFPKLRILDLSNNEF 669
                           +G         PF   R++ L ++  
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFA-DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (279), Expect = 7e-27
 Identities = 53/355 (14%), Positives = 107/355 (30%), Gaps = 79/355 (22%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           LDLS + L   I   + L     L++LNL+ N       +        L  L+L+ +   
Sbjct: 39  LDLSGNPLS-QIS-AADLAPFTKLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNYVQ 93

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLT 176
                E+     + +L  + N               N++ +                  +
Sbjct: 94  -----ELLVGPSIETLHAANN---------------NISRVS----------------CS 117

Query: 177 NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYG 236
                 ++ L N  +      +      +Q L L  N+ + +V                 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV----------------- 159

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
                +      +   L +L+L YN     +        +L+ LDLS+NK    +   F 
Sbjct: 160 -----NFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN 356
           +   ++++   NN+L   I  ++    +L    L  N  +       F          +N
Sbjct: 212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF---------SKN 261

Query: 357 NQLTGSISNSISELVNLIDLSLSSNNLS--GNVELYMFAELKNLLGLDLSHNSLS 409
            ++      ++ +L    +   +   L   G               + L H+   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 9e-26
 Identities = 50/304 (16%), Positives = 108/304 (35%), Gaps = 40/304 (13%)

Query: 391 MFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEFP-DFLRTQHRLQ 447
           +           ++ +SL        +   S   +  L LS   +S+     L    +L+
Sbjct: 5   IKQNGNRYKIEKVTDSSL---KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSI 507
           +L+LS N +     + + ++    L  L+L++N++  + + P  ++  L   +N++    
Sbjct: 62  LLNLSSNVLYE-TLD-LESLST--LRTLDLNNNYVQELLVGP--SIETLHAANNNISRVS 115

Query: 508 PFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMR 567
                    I ++NNK++    L     S + Y++L  N ++ +                
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------- 159

Query: 568 MNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL 627
                 +  +  +    L  LNL  N +   V    V  + L+ LD+ +N++        
Sbjct: 160 ------NFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 628 GALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHG 687
            + + +  + LR+N+                L   DL  N F       +F   Q +   
Sbjct: 211 QSAAGVTWISLRNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 688 NNNS 691
              +
Sbjct: 268 AKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 61/372 (16%), Positives = 127/372 (34%), Gaps = 88/372 (23%)

Query: 437 PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI---ELLPWKNL 493
            +  +  +R +I  ++D+ ++  + +   +     +  L+LS N L+ I   +L P+  L
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN--VKELDLSGNPLSQISAADLAPFTKL 60

Query: 494 RYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI 552
             L+L SN L  ++      +L  + ++NN +            SI  ++ +NN+++   
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS--- 112

Query: 553 PPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVL 612
                                 +    S+G     + L +N++     L     S ++ L
Sbjct: 113 ---------------------RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 613 DVGNNRING-TFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
           D+  N I+   F     +   L+ L L+ N     I     +  F KL+ LDLS+N+   
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKLAF 205

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL 731
           + P   FQ+   +                                          T I L
Sbjct: 206 MGPE--FQSAAGV------------------------------------------TWISL 221

Query: 732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSLENLTQLESLDLSSNKVAGEIPW 790
             NK    I + +    +L+  +   N      +        +++++   + K       
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 791 QLTSLNFLQVLN 802
           +  ++  L    
Sbjct: 281 EECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 49/298 (16%), Positives = 93/298 (31%), Gaps = 59/298 (19%)

Query: 512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNN 570
                  V+++ L   +     +  ++  ++LS N L+ +    LA  + L  L++  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGAL 630
            +          S L  L+LN+N ++      L+    +E L   NN I+          
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRG 119

Query: 631 SELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN 690
              + + L +N+               +++ LDL  NE   V       +   +      
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRS--RVQYLDLKLNEIDTVNFAELAASSDTL------ 171

Query: 691 SAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL 750
                                                 ++L  N     +   V     L
Sbjct: 172 ------------------------------------EHLNLQYNFIY-DVKGQVV-FAKL 193

Query: 751 KGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           K L+ S NKL   +    ++   +  + L +NK+   I   L     L+  +L  N  
Sbjct: 194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 51/283 (18%), Positives = 97/283 (34%), Gaps = 60/283 (21%)

Query: 528 IPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLT 586
           I     N +      ++++SL   +     +  ++  LD+  N          +  ++L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 587 ILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP 646
           +LNL+ N L     L L + S L  LD+ NN +       L     ++ L   +N     
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-- 112

Query: 647 ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY 706
               V+       + + L+NN+ T  L          +                      
Sbjct: 113 ---RVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRV---------------------- 146

Query: 707 SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG-RIPEVVGKLNSLKGLNFSHNKLTGLIP 765
                                 +DL  N+       E+    ++L+ LN  +N +  +  
Sbjct: 147 --------------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 766 YSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
                  +L++LDLSSNK+A  +  +  S   +  ++L  N+L
Sbjct: 187 --QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 740 IPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQ 799
           I E+    N  K    + + L   +    ++   ++ LDLS N ++      L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 800 VLNLSQNQLVGPIP 813
           +LNLS N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  153 bits (389), Expect = 1e-40
 Identities = 82/454 (18%), Positives = 158/454 (34%), Gaps = 84/454 (18%)

Query: 65  HGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG------FTRFPNLAHLNLSVSSFSGQ 118
           +   P       +      +  F D +    +             N   +    S+   +
Sbjct: 1   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 59

Query: 119 IPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTN 177
           +PA +     ++  L+L+                  + E+                    
Sbjct: 60  LPAALLDSFRQVELLNLNDL---------------QIEEID-------------TYAFAY 91

Query: 178 LSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYG 236
             ++  L +G   ++  +P ++F+ +P L  L+L  N  L+S+   +             
Sbjct: 92  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-LSSLPRGI------------- 136

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
                       N  +LT L +S NN       T      L++L LS+N+ T  +    +
Sbjct: 137 ----------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LS 183

Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN 356
            +  L   + S N L     S+++   ++  +  S+NS+N  +   +     L  + L++
Sbjct: 184 LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVE--LTILKLQH 235

Query: 357 NQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV 416
           N LT   +  +     L+++ LS N L   +  + F +++ L  L +S+N   L  L   
Sbjct: 236 NNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN--RLVALNLY 290

Query: 417 NSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLN 476
               P L +L LS  ++           RL+ L L  N I   +     +    TL +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHH----TLKNLT 345

Query: 477 LSHNFLTGIELLPW-KNLRYLDLRSNSLKGSIPF 509
           LSHN      L    +N+    +        I +
Sbjct: 346 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  149 bits (377), Expect = 4e-39
 Identities = 80/441 (18%), Positives = 144/441 (32%), Gaps = 90/441 (20%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            I ++L        + +       +       L   + +   N+        +  +  Q+
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLT 360
             L+ ++ Q+    + + +  H++  +Y+ +N++   +P  +F + PLL  + L  N L+
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 361 GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSF 420
                       L  LS+S+NNL   +E   F    +L  L LS N L   T +   S  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL---THVD-LSLI 185

Query: 421 PYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN 480
           P L   ++S   +S           ++ LD S N I                    +   
Sbjct: 186 PSLFHANVSYNLLSTLAI----PIAVEELDASHNSIN------------------VVRGP 223

Query: 481 FLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
                       L  L L+ N+L                       +      N   +  
Sbjct: 224 VNV--------ELTILKLQHNNLT----------------------DTA-WLLNYPGLVE 252

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
           V+LS N L   I                          F K  RL  L +++N+L  ++ 
Sbjct: 253 VDLSYNELE-KIMY----------------------HPFVKMQRLERLYISNNRLV-ALN 288

Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLR 660
           L       L+VLD+ +N +             L+ L L  N        ++       L+
Sbjct: 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-----TLKLSTHHTLK 342

Query: 661 ILDLSNNEFTGVLPTRYFQNF 681
            L LS+N++        F+N 
Sbjct: 343 NLTLSHNDWDCNSLRALFRNV 363

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  147 bits (374), Expect = 1e-38
 Identities = 66/360 (18%), Positives = 139/360 (38%), Gaps = 28/360 (7%)

Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
            L+    +    +       + L + +Q+  L+L++ +        FA    +  L    
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSI 367
           N +          +  L  + L  N L+ ++P G+F + P L ++ + NN L     ++ 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 368 SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLS 427
               +L +L LSSN L+        + + +L   ++S+N L   + L +  +   +  L 
Sbjct: 162 QATTSLQNLQLSSNRLTH----VDLSLIPSLFHANVSYNLL---STLAIPIA---VEELD 211

Query: 428 LSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE- 486
            S  +I+           L IL L  N +      W+ N     L  ++LS+N L  I  
Sbjct: 212 ASHNSINVVRG--PVNVELTILKLQHNNLTD--TAWLLNYPG--LVEVDLSYNELEKIMY 265

Query: 487 --LLPWKNLRYLDLRSNSLKGSIPFLP---PSLNFISVSNNKLSGEIPLSFCNMSSIFYV 541
              +  + L  L + +N L  ++       P+L  + +S+N L   +  +      +  +
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
            L +NS+  +      + +L  L +  N++  +  +   +      ++  D   +    L
Sbjct: 324 YLDHNSIVTL--KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 6e-28
 Identities = 76/441 (17%), Positives = 143/441 (32%), Gaps = 76/441 (17%)

Query: 405 HNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF-LRTQHRLQILDLSDNQIRGGIPNW 463
                   +            + +       +  F   T +  +I+   ++ +R  +P  
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAA 63

Query: 464 IWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIP---FLP-PSLNF 516
           + +     +  LNL+   +  I+         ++ L +  N+++  +P   F   P L  
Sbjct: 64  LLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121

Query: 517 ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSI 575
           + +  N LS      F N   +  +++SNN+L  +        +SL  L +  N      
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 576 PQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQV 635
                    L   N++ N L      +L     +E LD  +N IN           EL +
Sbjct: 182 LSLIP---SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTI 230

Query: 636 LILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGG 695
           L L+ N     +T +     +P L  +DLS NE    +    F   Q +           
Sbjct: 231 LKLQHNN----LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL----------- 274

Query: 696 NMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNF 755
                                            + +S N+    +      + +LK L+ 
Sbjct: 275 -------------------------------ERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 756 SHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
           SHN L   +  +     +LE+L L  N +   +   L++ + L+ L LS N         
Sbjct: 303 SHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSLR 357

Query: 816 KQFHTFSSDSYNGNMGLCGFP 836
             F   +  + +     C   
Sbjct: 358 ALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (265), Expect = 1e-24
 Identities = 83/478 (17%), Positives = 145/478 (30%), Gaps = 128/478 (26%)

Query: 338 TIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN 397
            I S L    +   + +               L N   ++  ++ +   +   +    + 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 398 LLGLDLSHNSLSLSTLLPVNS--SFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDN 454
           +  L+L+   +     +   +      +  L +    I   P    +    L +L L  N
Sbjct: 71  VELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 455 QIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIPF-L 510
            +   +P  I++     L  L++S+N L  IE        +L+ L L SN L   +   L
Sbjct: 128 DLSS-LPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 184

Query: 511 PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNN 570
            PSL   +VS N LS     +     ++  ++ S+NS+N +  P                
Sbjct: 185 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE------------ 227

Query: 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGAL 630
                         LTIL L  N L       L+N   L  +D+  N +           
Sbjct: 228 --------------LTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE---------- 261

Query: 631 SELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN 690
                  +  + F              +L  L +SNN    +    Y Q    +      
Sbjct: 262 ------KIMYHPFVK----------MQRLERLYISNNRLVAL--NLYGQPIPTL------ 297

Query: 691 SAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL 750
                                                 +DLS N     +     + + L
Sbjct: 298 ------------------------------------KVLDLSHNHLL-HVERNQPQFDRL 320

Query: 751 KGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           + L   HN +  L    L     L++L LS N       W   SL  L   N+++  +
Sbjct: 321 ENLYLDHNSIVTL---KLSTHHTLKNLTLSHN------DWDCNSLRALFR-NVARPAV 368

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 41/318 (12%), Positives = 92/318 (28%), Gaps = 60/318 (18%)

Query: 492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM 551
           N++        +  ++ +     + + +               +++   V   N+++  +
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYD-VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60

Query: 552 IPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLE 610
               L +   +  L++            F+    +  L +  N +    P    N   L 
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 611 VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
           VL +  N ++           +L  L + +N     I     +     L+ L LS+N  T
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQ-ATTSLQNLQLSSNRLT 178

Query: 671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID 730
             +      +                                                 +
Sbjct: 179 -HVDLSLIPSLF---------------------------------------------HAN 192

Query: 731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPW 790
           +S N         +    +++ L+ SHN +  +         +L  L L  N +  +  W
Sbjct: 193 VSYNLLS-----TLAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLT-DTAW 243

Query: 791 QLTSLNFLQVLNLSQNQL 808
            L +   L  ++LS N+L
Sbjct: 244 -LLNYPGLVEVDLSYNEL 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  152 bits (387), Expect = 9e-40
 Identities = 77/344 (22%), Positives = 124/344 (36%), Gaps = 39/344 (11%)

Query: 118 QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTN 177
            +P  I   ++   LDL  N    L+         +   L+EL LN   +S   P    N
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEF----ASFPHLEELELNENIVSAVEPGAFNN 78

Query: 178 LSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYG 236
           L +L +L L +  L+  IP  +F  L NL  L +S NK +  +                 
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENK-IVILLDY-------------- 122

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
                       +L  L  L++  N+         S L  L  L L     T       +
Sbjct: 123 ---------MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN 356
           +L  L  L   +  +N     S  RL+ L  + +S+     T+         L S+ + +
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 357 NQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV 416
             LT     ++  LV L  L+LS N +S  +E  M  EL  L  + L    L    ++  
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL---AVVEP 289

Query: 417 N--SSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIR 457
                  YL +L++S   ++        +   L+ L L  N + 
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  152 bits (386), Expect = 1e-39
 Identities = 86/354 (24%), Positives = 134/354 (37%), Gaps = 61/354 (17%)

Query: 179 SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCN 238
           +   ++         ++PE I      + L L  N  + ++                   
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKN-RIKTL------------------- 47

Query: 239 FMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC-IFAN 297
                     +   L  L+L+ N  S   P   +NL  LR L L +N+    IP  +F  
Sbjct: 48  ----NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTG 102

Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRN 356
           L+ L+ LD S N++   +      L++L ++ +  N L   I    F+    LE + L  
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEK 161

Query: 357 NQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV 416
             LT   + ++S L  LI L L   N++  +  Y F  L  L  L++SH    L T+ P 
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPY-LDTMTPN 219

Query: 417 NSSFPYLSMLSLSSCNISEFPDF-LRTQHRLQILDLSDNQIRGGIP-------------- 461
                 L+ LS++ CN++  P   +R    L+ L+LS N I   I               
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQ 278

Query: 462 ---NWIWNVGKDT------LNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSL 503
                +  V          L  LN+S N LT +E        NL  L L SN L
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  150 bits (381), Expect = 6e-39
 Identities = 76/313 (24%), Positives = 128/313 (40%), Gaps = 15/313 (4%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
                 L+L  +        E +    L  L+L+ N    ++         NL  L+ L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLG 86

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVF 220
           L S  +        T LS+LT LD+    +   + + +F+ L NL++L +  N  L  + 
Sbjct: 87  LRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND-LVYIS 144

Query: 221 PKV--NWSSPLRFMDLYGCNFMGSIPA-SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
            +     +S L  + L  CN   SIP  +L +L  L  L L + N +     +   L +L
Sbjct: 145 HRAFSGLNS-LEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNG 337
           + L++S+  +   +         L+ L  ++  L      +V  L  L  + LSYN ++ 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS- 261

Query: 338 TIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELK 396
           TI   +      L+ I L   QL      +   L  L  L++S N L+  +E  +F  + 
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG 320

Query: 397 NLLGLDLSHNSLS 409
           NL  L L  N L+
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (338), Expect = 2e-33
 Identities = 70/361 (19%), Positives = 131/361 (36%), Gaps = 64/361 (17%)

Query: 327 TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
            +          +P G+ T      +DL  N++     +  +   +L +L L+ N +S  
Sbjct: 15  AVLCHRKRFV-AVPEGIPTE--TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-A 70

Query: 387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEFPDFL-RTQ 443
           VE   F  L NL  L L  N L    L+P+   +    L+ L +S   I    D++ +  
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRL---KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503
           + L+ L++ DN +          +     + LN               +L  L L   +L
Sbjct: 128 YNLKSLEVGDNDLV--------YISHRAFSGLN---------------SLEQLTLEKCNL 164

Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLW 562
             SIP                      +  ++  +  + L + ++N +          L 
Sbjct: 165 T-SIP--------------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
            L++    +  ++      G  LT L++    L     L++ +  +L  L++  N I+  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---PKLRILDLSNNEFTGVLPTRYFQ 679
             + L  L  LQ + L   +        V  + F     LR+L++S N+ T  L    F 
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-----VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH 317

Query: 680 N 680
           +
Sbjct: 318 S 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 3e-26
 Identities = 62/380 (16%), Positives = 129/380 (33%), Gaps = 69/380 (18%)

Query: 443 QHRLQILDLSDNQIR---GGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYL 496
             + + +     +      GIP             L+L  N +  +       + +L  L
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPTE--------TRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 497 DLRSNSLKGSIP---FLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI 552
           +L  N +  ++    F    +L  + + +N+L       F  +S++  +++S N +  ++
Sbjct: 62  ELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

Query: 553 PPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611
                +  +L  L++  N+      + FS  + L  L L    L      +L +   L V
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
           L + +  IN         L  L+VL +    +   +T +        L  L +++   T 
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT- 237

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL 731
            +P    ++   +                                            ++L
Sbjct: 238 AVPYLAVRHLVYL------------------------------------------RFLNL 255

Query: 732 SGNKFQGRIPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPW 790
           S N     I   +  +L  L+ +     +L  + PY+   L  L  L++S N++   +  
Sbjct: 256 SYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEE 313

Query: 791 QL-TSLNFLQVLNLSQNQLV 809
            +  S+  L+ L L  N L 
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 45/244 (18%), Positives = 80/244 (32%), Gaps = 55/244 (22%)

Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL 633
           ++P+     +   +L+L  N+++        +   LE L++  N ++   P     L  L
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 634 QVLILRSNRFHGPITYSVTRFPF---PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN 690
           + L LRSNR        +    F     L  LD+S N+   +L    FQ+   +      
Sbjct: 83  RTLGLRSNRLK-----LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL------ 130

Query: 691 SAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVV-GKLNS 749
                                                ++++  N     I       LNS
Sbjct: 131 ------------------------------------KSLEVGDNDLV-YISHRAFSGLNS 153

Query: 750 LKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV 809
           L+ L      LT +   +L +L  L  L L    +     +    L  L+VL +S    +
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 810 GPIP 813
             + 
Sbjct: 214 DTMT 217

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  152 bits (384), Expect = 1e-38
 Identities = 87/571 (15%), Positives = 184/571 (32%), Gaps = 118/571 (20%)

Query: 59  LSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG------FTRFPNLAHLNLSV 112
           +   + +   P       +      +  F D +    +             N   +    
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 113 SSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
           S+   ++PA +     ++  L+L+                  + E+              
Sbjct: 61  STMR-KLPAALLDSFRQVELLNLNDL---------------QIEEID------------- 91

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLR 230
                   ++  L +G   ++  +P ++F+ +P L  L+L  N  L+S+           
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-LSSL----------- 138

Query: 231 FMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ 290
                             N  +LT L +S NN       T      L++L LS+N+ T  
Sbjct: 139 ------------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 185

Query: 291 IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE 350
           +    + +  L   + S N L     S+++   ++  +  S+NS+N  +   +     L 
Sbjct: 186 VD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVE--LT 235

Query: 351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
            + L++N LT   +  +     L+++ LS N L   +  + F +++ L  L +S+N    
Sbjct: 236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN---- 288

Query: 411 STLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD 470
                                 +     + +    L++LDLS N +   +        + 
Sbjct: 289 ---------------------RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR- 325

Query: 471 TLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKG-SIPFLPPSLNFISVSNNKLSGEIP 529
            L +L L HN +  ++L     L+ L L  N     S+  L  ++   +V +     +I 
Sbjct: 326 -LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384

Query: 530 LSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
                        L +            +  L    + + +    + +   + S    +N
Sbjct: 385 Y-----------QLEHGLCCKESDKPYLDRLL--QYIALTSVVEKVQRAQGRCSATDTIN 431

Query: 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
              +          V     E L+   N + 
Sbjct: 432 SVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  145 bits (366), Expect = 8e-37
 Identities = 93/507 (18%), Positives = 183/507 (36%), Gaps = 48/507 (9%)

Query: 182 TSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWS-SPLRFMDLYGCNFM 240
             +D    GL   +P+++        L +S N  ++ ++     S S LR + +      
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQ 58

Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC-IFANLT 299
               +      +L YLDLS+N     I         L+HLDLS N F     C  F N++
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
           QL FL  S   L       ++ L+    + +   +                +  L     
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFP 173

Query: 360 TGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419
           T    + I ++      +L  +N+   +E    +   ++L    ++  LS  TL  + ++
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
           +     +     + +           +    +S+ +++G +    ++    +L  L++  
Sbjct: 234 WNSFIRILQLVWHTT-----------VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 480 NFLTGIELLPW------KNLRYLDLRSNSLKGSIPFLPPS----LNFISVSNNKLSGEIP 529
                             N+   +   +  +  +  L PS       +  SNN L+  + 
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 530 LSFCNMSSIFYVNLSNNSLNGMIPPCLA---NSSLWFLDMRMNNFHGSIPQ-TFSKGSRL 585
            +  +++ +  + L  N L  +           SL  LD+  N+      +   S    L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645
             LN++ N L  ++   L     ++VLD+ +N+I  + P  +  L  LQ L + SN+   
Sbjct: 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK- 457

Query: 646 PITYSVTRFPF---PKLRILDLSNNEF 669
               SV    F     L+ + L  N +
Sbjct: 458 ----SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  144 bits (364), Expect = 2e-36
 Identities = 104/544 (19%), Positives = 189/544 (34%), Gaps = 82/544 (15%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            +P  L    + T L++S N  S    S + +L +LR L +S+N+       +F    +L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLT 360
            +LD S+N+L      S     +L  + LS+N+ +       F +   L+ + L    L 
Sbjct: 72  EYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 361 GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSF 420
               +S+  + +L    +         E      L++        N+ SL  + P N  F
Sbjct: 129 ---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF-------NTESLHIVFPTNKEF 178

Query: 421 PYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN 480
            ++  +S+ +    E  +        +         +      + N+   TLN++  + N
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL---TLNNIETTWN 235

Query: 481 FLTGIELLPW-KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF 539
               I  L W   + Y  + +  L+G + F     +  S+                    
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK------------------- 276

Query: 540 YVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599
                               +L    +  + F       +   S + I N   +      
Sbjct: 277 --------------------ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 600 PLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG-PITYSVTRFPFPK 658
            L     S    LD  NN +  T     G L+EL+ LIL+ N+         +T      
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKS 375

Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
           L+ LD+S N  +           ++++  N +S           N     I       + 
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS-----------NILTDTIFRCLPPRI- 423

Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
                     +DL  NK +  IP+ V KL +L+ LN + N+L  +     + LT L+ + 
Sbjct: 424 --------KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

Query: 779 LSSN 782
           L +N
Sbjct: 475 LHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  136 bits (343), Expect = 8e-34
 Identities = 96/490 (19%), Positives = 170/490 (34%), Gaps = 61/490 (12%)

Query: 156 ELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNK 214
           +   L ++   +S    S + +LS L  L + +  +Q  +  ++F     L+ L LS+NK
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 215 NLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF-SGHIPSTLSN 273
            L  +                          S      L +LDLS+N F +  I     N
Sbjct: 81  -LVKI--------------------------SCHPTVNLKHLDLSFNAFDALPICKEFGN 113

Query: 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL---NGPISSSVSRLHSLVTIYL 330
           + QL+ L LS            A+L     L            P         SL  ++ 
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 331 SYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI------DLSLSSNNLS 384
           +    +  +   + T   LE  +++        S  +S L  L       +L+L++   +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 385 GN--VELYMFAELKNLLGLDLSHNSL----SLSTLLPVNSSFPYLSMLSLSSCNISEFPD 438
            N  + +        +    +S+  L             +S   LS+  + S        
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 439 FLRTQ-HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL---LPWKNLR 494
           ++      + I + + +  R  +     +       HL+ S+N LT            L 
Sbjct: 294 YIYEIFSNMNIKNFTVSGTR-MVHMLCPS-KISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 495 YLDLRSNSLKGSIPFLP------PSLNFISVSNNKLSGEIPLSFC-NMSSIFYVNLSNNS 547
            L L+ N LK  +  +        SL  + +S N +S +     C    S+  +N+S+N 
Sbjct: 352 TLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 548 LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCS 607
           L   I  CL    +  LD+  N    SIP+   K   L  LN+  NQL+          +
Sbjct: 411 LTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468

Query: 608 FLEVLDVGNN 617
            L+ + +  N
Sbjct: 469 SLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (321), Expect = 4e-31
 Identities = 85/434 (19%), Positives = 171/434 (39%), Gaps = 35/434 (8%)

Query: 55  TGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS 114
             LDLS ++L   I          +L+ L+L+FN F+   I   F     L  L LS + 
Sbjct: 72  EYLDLSHNKLV-KISCHP----TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

Query: 115 FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
                   I+HL+    L + G +    + P      + L +     L+ V  + +   F
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDP------EGLQDFNTESLHIVFPTNKEFHF 180

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           + ++S  T  +L    ++  + +N           L  N  L+++      ++   F+ +
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPS-----TLSNLQQLRHLDLSNNKFTG 289
                       L   + + Y  +S     G +       + ++L+ L    + ++ F  
Sbjct: 241 L----------QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PL 348
               I+   + ++  +F+ +          S++   + +  S N L              
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTE 349

Query: 349 LESIDLRNNQLT--GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
           LE++ L+ NQL     I+   +++ +L  L +S N++S + +    +  K+LL L++S N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 407 SLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
            L   T        P + +L L S  I   P  +     LQ L+++ NQ++  +P+ I++
Sbjct: 410 IL---TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

Query: 467 VGKDTLNHLNLSHN 480
               +L  + L  N
Sbjct: 466 RLT-SLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (308), Expect = 2e-29
 Identities = 90/490 (18%), Positives = 167/490 (34%), Gaps = 45/490 (9%)

Query: 327 TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
            +  S N L   +P  L        +++  N ++   ++ I  L  L  L +S N +   
Sbjct: 4   LVDRSKNGLI-HVPKDLSQK--TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPD--FLRTQH 444
           +++ +F   + L  LDLSHN L     +  +     L  L LS       P         
Sbjct: 60  LDISVFKFNQELEYLDLSHNKL---VKISCHP-TVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLK 504
           +L+ L LS   +       I ++    +  L L   +    +    ++     L      
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKV-LLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 505 GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFL 564
                    ++  +V+N +LS    +   N  S F   L+    N  +      S+L   
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL------SNLTLN 228

Query: 565 DMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF-----LEVLDVGNNRI 619
           ++                + +   ++++ +L+G +     + S      L +  V ++  
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 620 NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ 679
                      S + +     +     + + +          LD SNN  T       F+
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTDT----VFE 342

Query: 680 NFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGR 739
           N   +              +         +  +  +  +M+ +      +D+S N     
Sbjct: 343 NCGHLTE---------LETLILQMNQLKELSKIAEMTTQMKSL----QQLDISQNSVSYD 389

Query: 740 IPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFL 798
             +       SL  LN S N LT  I   L    +++ LDL SNK+   IP Q+  L  L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEAL 446

Query: 799 QVLNLSQNQL 808
           Q LN++ NQL
Sbjct: 447 QELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 7e-20
 Identities = 73/390 (18%), Positives = 149/390 (38%), Gaps = 39/390 (10%)

Query: 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNS 502
             IL++S N I     + I ++ K  L  L +SHN +  ++       + L YLDL  N 
Sbjct: 23  TTILNISQNYISELWTSDILSLSK--LRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 503 LKGSIPFLP-PSLNFISVSNNKLSGEIPLS--FCNMSSIFYVNLSNNSLNGMIPPCLANS 559
           L   I   P  +L  + +S N     +P+   F NMS + ++ LS   L       +A+ 
Sbjct: 81  LV-KISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI 619
           ++  + + +   +G   +           +L+           +++ S   V ++  + I
Sbjct: 139 NISKVLLVLGETYGE-KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 620 NG-----------TFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK-LRILDLSNN 667
                        +  A L    +L  L L +          + +  +   +    +SN 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 668 EFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFT 727
           +  G L  R F         +  S +  +++    + +      +        ++ +   
Sbjct: 258 KLQGQLDFRDF-------DYSGTSLKALSIHQVVSDVFGFPQSYI-------YEIFSNMN 303

Query: 728 TIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA-- 785
             + + +  +        K++    L+FS+N LT  +  +  +LT+LE+L L  N++   
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 786 GEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
            +I    T +  LQ L++SQN +     +G
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T +++S N         +  L+ L+ L  SHN++  L     +   +LE LDLS N    
Sbjct: 24  TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN---- 79

Query: 787 EIPWQLTSLNF-----LQVLNLSQNQLVGPIPQGKQFHTFSS 823
               +L  ++      L+ L+LS N     +P  K+F   S 
Sbjct: 80  ----KLVKISCHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQ 116

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  140 bits (355), Expect = 9e-37
 Identities = 77/334 (23%), Positives = 128/334 (38%), Gaps = 53/334 (15%)

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
           LR +          +P  L        LDL  N  +        NL+ L  L L NNK +
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
              P  FA L +L  L  S NQL                           +P  +  +  
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-------------------------ELPEKMPKT-- 122

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL-SGNVELYMFAELKNLLGLDLSHNS 407
           L+ + +  N++T    +  + L  +I + L +N L S  +E   F  +K L  + ++  +
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
           +   T +P     P L+ L L    I++     L+  + L  L LS N I       + N
Sbjct: 183 I---TTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 467 VGKDTLNHLNLSHNFLTGIE--LLPWKNLRYLDLRSNSLKGSIP---FLP-------PSL 514
                L  L+L++N L  +   L   K ++ + L +N++  +I    F P        S 
Sbjct: 239 TPH--LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASY 295

Query: 515 NFISVSNNKLS-GEI-PLSFCNMSSIFYVNLSNN 546
           + +S+ +N +   EI P +F  +     V L N 
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  133 bits (336), Expect = 3e-34
 Identities = 78/356 (21%), Positives = 128/356 (35%), Gaps = 75/356 (21%)

Query: 162 LNSVDMSY----EVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNL 216
           L  V  S     +VP  L        LDL N  +   I +  F  L NL  LIL  NK +
Sbjct: 33  LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK-I 88

Query: 217 TSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ 276
           + + P                            L +L  L LS N     +P  +   + 
Sbjct: 89  SKISPGA-----------------------FAPLVKLERLYLSKNQLK-ELPEKM--PKT 122

Query: 277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL-NGPISSSV-SRLHSLVTIYLSYNS 334
           L+ L +  N+ T     +F  L Q+  ++   N L +  I +     +  L  I ++  +
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 335 LNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAE 394
           +  TIP GL  S  L  + L  N++T   + S+  L NL  L LS N++S  V+    A 
Sbjct: 183 IT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLAN 238

Query: 395 LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDN 454
             +L  L L++N                          + + P  L     +Q++ L +N
Sbjct: 239 TPHLRELHLNNN-------------------------KLVKVPGGLADHKYIQVVYLHNN 273

Query: 455 QIR----GGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-----KNLRYLDLRSN 501
            I            +N  K + + ++L  N +   E+ P           + L + 
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  126 bits (318), Expect = 8e-32
 Identities = 56/313 (17%), Positives = 113/313 (36%), Gaps = 42/313 (13%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
            P+ A L+L  +  +     +  +L  L +L L  N    +           L +L+ L 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLY 106

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVF 220
           L+   +  E+P  +    +L  L +    +   + +++F  L  +  + L  N   +S  
Sbjct: 107 LSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 221 PKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHL 280
                                    +   + +L+Y+ ++  N +  IP  L     L  L
Sbjct: 163 E----------------------NGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTEL 197

Query: 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
            L  NK T         L  L+ L  S N ++   + S++    L  ++L+ N L   +P
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 341 SGLFTSPLLESIDLRNNQLTG------SISNSISELVNLIDLSLSSNNLS-GNVELYMFA 393
            GL     ++ + L NN ++             ++  +   +SL SN +    ++   F 
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 394 ELKNLLGLDLSHN 406
            +     + L + 
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (308), Expect = 2e-30
 Identities = 61/333 (18%), Positives = 117/333 (35%), Gaps = 48/333 (14%)

Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383
            L  +  S   L   +P  L        +DL+NN++T         L NL  L L +N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF-LRT 442
           S  +    FA L  L  L LS N L     LP       L  L +    I++        
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQL---KELPEKM-PKTLQELRVHENEITKVRKSVFNG 143

Query: 443 QHRLQILDLSDNQIR-GGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSN 501
            +++ +++L  N ++  GI N  +  G   L+++ ++   +T I      +L  L L  N
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202

Query: 502 SLKGSIPFLP----PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA 557
            +   +         +L  + +S N +S     S  N   +  ++L+NN L         
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------- 253

Query: 558 NSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG------SVPLSLVNCSFLEV 611
                            +P   +    + ++ L++N +          P      +    
Sbjct: 254 ----------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 612 LDVGNNRINGTF--PAWLGALSELQVLILRSNR 642
           + + +N +      P+    +     + L + +
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 49/327 (14%), Positives = 105/327 (32%), Gaps = 63/327 (19%)

Query: 492 NLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           +LR +      L+  +P  LPP    + + NNK++      F N+ ++  + L NN ++ 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 551 MIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFL 609
           + P   A    L  L +  N       +       L  L +++N++           + +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQM 147

Query: 610 EVLDVGNNRINGTF--PAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNN 667
            V+++G N +  +         + +L  + +           ++ +   P L  L L  N
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGN 202

Query: 668 EFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFT 727
           + T  +     +    +                                           
Sbjct: 203 KIT-KVDAASLKGLNNL------------------------------------------A 219

Query: 728 TIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV--- 784
            + LS N         +     L+ L+ ++NKL   +P  L +   ++ + L +N +   
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 785 ---AGEIPWQLTSLNFLQVLNLSQNQL 808
                  P   T       ++L  N +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 6e-20
 Identities = 67/377 (17%), Positives = 116/377 (30%), Gaps = 93/377 (24%)

Query: 422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
           +L ++  S   + + P  L       +LDL +N+I         N+    L+ L L +N 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKN--LHTLILINNK 87

Query: 482 LTGIE---LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSI 538
           ++ I      P   L  L L  N LK     +P +L  + V  N+++      F  ++ +
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 539 FYVNLSNNSL-NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG 597
             V L  N L +  I                          F    +L+ + + D  +  
Sbjct: 148 IVVELGTNPLKSSGIEN----------------------GAFQGMKKLSYIRIADTNIT- 184

Query: 598 SVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF- 656
           ++P  L     L  L +  N+I     A L  L+ L  L L  N        +V      
Sbjct: 185 TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-----AVDNGSLA 237

Query: 657 --PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKG 714
             P LR L L+NN+   V       + + +                              
Sbjct: 238 NTPHLRELHLNNNKLVKV--PGGLADHKYI------------------------------ 265

Query: 715 VNMEMEKVLNIFTTIDLSGNKFQG------RIPEVVGKLNSLKGLNFSHNKL--TGLIPY 766
                         + L  N            P    K  S  G++   N +    + P 
Sbjct: 266 ------------QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 767 SLENLTQLESLDLSSNK 783
           +   +    ++ L + K
Sbjct: 314 TFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLSVSSF 115
           L +  + +   +        L  + ++ L  N    S I  G F     L+++ ++ ++ 
Sbjct: 126 LRVHENEIT-KVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 116 SGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFL 175
           +  IP  +     L  L L GN    +D   L    + LN L +L L+   +S      L
Sbjct: 184 T-TIPQGL--PPSLTELHLDGNKITKVDAASL----KGLNNLAKLGLSFNSISAVDNGSL 236

Query: 176 TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY 235
            N   L  L L N  L   +P  +     +Q + L  N  ++++                
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP--------- 285

Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI--PSTLSNLQQLRHLDLSNNK 286
                   P      +  + + L  N        PST   +     + L N K
Sbjct: 286 --------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             + LS N+ +  +PE      +L+ L    N++T +       L Q+  ++L +N +  
Sbjct: 103 ERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 787 EI--PWQLTSLNFLQVLNLSQNQLVGPIPQG 815
                     +  L  + ++   +   IPQG
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITT-IPQG 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (350), Expect = 4e-36
 Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 29/257 (11%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           L+L    L    P     F L HLQ + +         +     +F  L  L L+ +   
Sbjct: 86  LELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR 140

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLT 176
             +PA I+ L++L  L +    +L         L + L               +      
Sbjct: 141 -ALPASIASLNRLRELSIRACPEL-------TELPEPLAST------------DASGEHQ 180

Query: 177 NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKV-NWSSPLRFMDLY 235
            L +L SL L   G++ S+P +I  L NL++L +  +  L+++ P + +    L  +DL 
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPK-LEELDLR 237

Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF 295
           GC  + + P   G  + L  L L   +    +P  +  L QL  LDL       ++P + 
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 296 ANLTQLSFLDFSNNQLN 312
           A L     +    +   
Sbjct: 298 AQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  133 bits (336), Expect = 3e-34
 Identities = 53/323 (16%), Positives = 105/323 (32%), Gaps = 28/323 (8%)

Query: 174 FLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD 233
              + S   +L            + + +     N   +   +        N       ++
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-QANSN----NPQIE 61

Query: 234 LYGCNFMGSIPASLGNLSQ--LTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
                 + +    L + +Q     L+L         P     L  L+H+ +       ++
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL--- 348
           P        L  L  + N L   + +S++ L+ L  + +        +P  L ++     
Sbjct: 120 PDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 349 ------LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL-YMFAELKNLLGL 401
                 L+S+ L    +  S+  SI+ L NL  L + ++ LS    L      L  L  L
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS---ALGPAIHHLPKLEEL 234

Query: 402 DLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN-ISEFPDFLRTQHRLQILDLSDNQIRGGI 460
           DL   + +L    P+      L  L L  C+ +   P  +    +L+ LDL        +
Sbjct: 235 DLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 461 PNWIWNVGKDTLNHLNLSHNFLT 483
           P+ I  +       + +  +   
Sbjct: 294 PSLIAQLPA--NCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (335), Expect = 4e-34
 Identities = 61/353 (17%), Positives = 112/353 (31%), Gaps = 52/353 (14%)

Query: 122 EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSL 181
              H S   +L   G++        L+     L++ Q       +  +       N ++ 
Sbjct: 7   HHHHSSGRENLYFQGSTA-------LRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNP 58

Query: 182 TSLDLGNCGLQGSIPENIFRL--PNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF 239
                    L+ +  + +     P    L L     L                       
Sbjct: 59  QIETRTGRALK-ATADLLEDATQPGRVALELRSVP-LP---------------------- 94

Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
               P     LS L ++ +        +P T+     L  L L+ N     +P   A+L 
Sbjct: 95  --QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN 150

Query: 300 QLSFLDFS-NNQL--------NGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE 350
           +L  L      +L        +   S     L +L ++ L +  +  ++P+ +     L+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
           S+ +RN+ L+ ++  +I  L  L +L L       N    +F     L  L L   S +L
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCS-NL 266

Query: 411 STLLPVNSSFPYLSMLSLSSC-NISEFPDFLRTQHRLQILDLSDNQIRGGIPN 462
            TL         L  L L  C N+S  P  +       I+ +  +       +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (314), Expect = 3e-31
 Identities = 49/335 (14%), Positives = 97/335 (28%), Gaps = 40/335 (11%)

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
              +   G   +      L    +    D +      H     +N    +    +     
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALK 69

Query: 289 GQIPCI-FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSP 347
                +  A       L+  +  L         RL  L  + +    L   +P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 348 LLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS 407
            LE++ L  N L  ++  SI+ L  L +LS+ +             EL  L         
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACP-----------ELTELP------EP 169

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNV 467
           L+ +     +     L  L L    I   P  +     L+ L + ++ +   +   I ++
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 468 GKDTLNHLNLSH-NFLTGI--ELLPWKNLRYLDLRSNSLKGSIPFLPPS------LNFIS 518
            K  L  L+L     L            L+ L L+  S   ++  LP        L  + 
Sbjct: 229 PK--LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS---NLLTLPLDIHRLTQLEKLD 283

Query: 519 VSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIP 553
           +        +P     + +   + +  +    +  
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (312), Expect = 5e-31
 Identities = 52/309 (16%), Positives = 114/309 (36%), Gaps = 27/309 (8%)

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
            E++  + +       + +S+     +      + +     +  A   N      +  +L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNA-----DRNRWHSAWRQANSNNPQIETRTGRAL 68

Query: 409 SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
             +  L  +++ P    L L S  + +FPD       LQ + +    +   +P+ +    
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 469 KDTLNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKGSIP------------FLPPSL 514
              L  L L+ N L  +   +     LR L +R+      +P                +L
Sbjct: 128 G--LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 515 NFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHG 573
             + +    +   +P S  N+ ++  + + N+ L+  + P + +   L  LD+R      
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243

Query: 574 SIPQTFSKGSRLTILNLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSE 632
           + P  F   + L  L L D + L  ++PL +   + LE LD+         P+ +  L  
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 633 LQVLILRSN 641
             ++++  +
Sbjct: 303 NCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (306), Expect = 3e-30
 Identities = 59/384 (15%), Positives = 111/384 (28%), Gaps = 73/384 (19%)

Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
           MGS      + S    L    +         LS  Q+  + D +      +      N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56

Query: 300 QLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQ 358
                  +   L         +     V + L    L    P   F    L+ + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 359 LTGSISNSISELVNLIDLSLSSNNLSGNVEL-YMFAELKNLLGLDLSHNSLSLSTLLPVN 417
           L   + +++ +   L  L+L+ N L     L    A L  L  L +      L+ L    
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACP-ELTELPE-- 168

Query: 418 SSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNL 477
                     L+S + S     L     LQ L L    IR  +P  I N           
Sbjct: 169 ---------PLASTDASGEHQGLV---NLQSLRLEWTGIRS-LPASIAN----------- 204

Query: 478 SHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSS 537
                        +NL+ L +R++ L                        +  +  ++  
Sbjct: 205 ------------LQNLKSLKIRNSPLS----------------------ALGPAIHHLPK 230

Query: 538 IFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596
           +  ++L   +     PP     + L  L ++  +   ++P    + ++L  L+L      
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 597 GSVPLSLVNCSFLEVLDVGNNRIN 620
             +P  +       ++ V  +   
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.9 bits (242), Expect = 6e-22
 Identities = 48/409 (11%), Positives = 107/409 (26%), Gaps = 103/409 (25%)

Query: 395 LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDN 454
                 L         + L P +           +  N           +  QI   +  
Sbjct: 11  SSGRENLYFQ----GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 455 QIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKGSIPFLPP 512
            ++    + + +  +     L L    L     +     +L+++ + +  L      LP 
Sbjct: 67  ALKA-TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME----LPD 121

Query: 513 S------LNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDM 566
           +      L  ++++ N L   +P S  +++ +  +++        +P  LA++       
Sbjct: 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 567 RMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAW 626
            + N              L  L L    +  S+P S+ N   L+ L + N+ ++      
Sbjct: 181 GLVN--------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686
           +  L                           KL  LDL         P            
Sbjct: 225 IHHLP--------------------------KLEELDLRGCTALRNYP------------ 246

Query: 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGK 746
                   G                     ++          + L        +P  + +
Sbjct: 247 -----PIFGGR-----------------APLK---------RLILKDCSNLLTLPLDIHR 275

Query: 747 LNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL 795
           L  L+ L+         +P  +  L     + +  +  A     +  + 
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 58/402 (14%), Positives = 99/402 (24%), Gaps = 118/402 (29%)

Query: 423 LSMLSLSSCN-ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
              L       +  + D L    R    D +         N   N  +            
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS--NNPQIETRTGRALKAT 71

Query: 482 LTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYV 541
              +E         L+LRS  L                       + P     +S + ++
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP----------------------QFPDQAFRLSHLQHM 109

Query: 542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
            +    L                          +P T  + + L  L L  N L  ++P 
Sbjct: 110 TIDAAGLM------------------------ELPDTMQQFAGLETLTLARNPLR-ALPA 144

Query: 602 SLVNCSFLEVLDV-GNNRI--------NGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652
           S+ + + L  L +     +        +         L  LQ L L              
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--------R 196

Query: 653 RFP-----FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYS 707
             P        L+ L + N+  + + P                                 
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGP--------------------------------- 223

Query: 708 AILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH-NKLTGLIPY 766
                      +  +  +   +DL G       P + G    LK L     + L  L P 
Sbjct: 224 ----------AIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PL 271

Query: 767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
            +  LTQLE LDL        +P  +  L    ++ +  +  
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 27/227 (11%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           + +  + L   +P   ++     L+ L LA N      +         L  L++      
Sbjct: 109 MTIDAAGLM-ELPD--TMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPEL 163

Query: 117 GQIPAEI---------SHLSKLVSLDLSGNSQLGLDTPVLKAL---VQNLNELQELVLNS 164
            ++P  +           L  L SL L            +++L   + NL  L+ L + +
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTG--------IRSLPASIANLQNLKSLKIRN 215

Query: 165 VDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVN 224
             +S  +   + +L  L  LDL  C    + P        L+ LIL    NL ++   ++
Sbjct: 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 225 WSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTL 271
             + L  +DL GC  +  +P+ +  L     + +   +    +    
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 5e-18
 Identities = 41/305 (13%), Positives = 81/305 (26%), Gaps = 58/305 (19%)

Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFH 572
               +    +                +  + +            ANS+   ++ R     
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68

Query: 573 GSIPQTFSKGSR--LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGAL 630
            +        ++     L L    L    P      S L+ + +    +    P  +   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 631 SELQVLILRSNRFHGPITYSVTRFP-----FPKLRILDLSNNEFTGVLPTRYFQNFQAMM 685
           + L+ L L  N             P       +LR L +        LP           
Sbjct: 127 AGLETLTLARNPL--------RALPASIASLNRLRELSIRACPELTELP----------- 167

Query: 686 HGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVG 745
                     +   +  ++                  L    ++ L     +  +P  + 
Sbjct: 168 ------EPLASTDASGEHQG-----------------LVNLQSLRLEWTGIR-SLPASIA 203

Query: 746 KLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLS- 804
            L +LK L   ++ L+ L   ++ +L +LE LDL         P        L+ L L  
Sbjct: 204 NLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 805 QNQLV 809
            + L+
Sbjct: 263 CSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 55  TGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS 114
             L L  + +  S+P+  S+ +L +L+ L +  +    S + P     P L  L+L   +
Sbjct: 186 QSLRLEWTGIR-SLPA--SIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCT 240

Query: 115 FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKAL---VQNLNELQELVLNSVDMSYEV 171
                P      + L  L L   S L         L   +  L +L++L L        +
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNL-------LTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPEN 198
           PS +  L +   + +    LQ  + ++
Sbjct: 294 PSLIAQLPANCIILVPPH-LQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             ++L       + P+   +L+ L+ +      L  L P +++    LE+L L+ N +  
Sbjct: 84  VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLR- 140

Query: 787 EIPWQLTSLNFLQVLNLSQNQLVGPIP 813
            +P  + SLN L+ L++     +  +P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 727 TTIDLSGNKFQGRIPEVVGK---------LNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777
             + +        +PE +           L +L+ L      +  L P S+ NL  L+SL
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSL 211

Query: 778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813
            + ++ ++  +   +  L  L+ L+L     +   P
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  140 bits (354), Expect = 9e-35
 Identities = 77/416 (18%), Positives = 148/416 (35%), Gaps = 53/416 (12%)

Query: 225 WSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSN 284
            ++    +++ G + + ++P  L     +T L +  NN +  +P+    L   R L++S 
Sbjct: 38  LNNGNAVLNV-GESGLTTLPDCLPA--HITTLVIPDNNLT-SLPALPPEL---RTLEVSG 90

Query: 285 NKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
           N+ T  +P +   L +LS        L        +    L  +++  N L  ++P    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHL-------PALPSGLCKLWIFGNQLT-SLPVLP- 140

Query: 345 TSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLS 404
             P L+ + + +NQL  S+    S    L  L   +N L+      +      L  L +S
Sbjct: 141 --PGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-----SLPMLPSGLQELSVS 189

Query: 405 HNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWI 464
            N L     LP  +    L  L   +  ++  P        L+ L +S N++   +P   
Sbjct: 190 DNQL---ASLP--TLPSELYKLWAYNNRLTSLPALPS---GLKELIVSGNRLTS-LPVLP 240

Query: 465 WNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP---FLPPSLNFISVSN 521
                  L  L +S N LT + +LP   L  L +  N L   +P       S   +++  
Sbjct: 241 SE-----LKELMVSGNRLTSLPMLP-SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 522 NKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSK 581
           N LS     +   ++S    +      +         +    L          +P    +
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA----AADWLVPAREGE 349

Query: 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTF-PAWLGALSELQVL 636
            +     ++   + + +   SL      E  +   +        +WL  L+E + L
Sbjct: 350 PAPADRWHMFGQE-DNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  134 bits (338), Expect = 8e-33
 Identities = 74/343 (21%), Positives = 125/343 (36%), Gaps = 40/343 (11%)

Query: 296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLR 355
                 + L+   + L   +   +     + T+ +  N+L  ++P+     P L ++++ 
Sbjct: 37  CLNNGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALP---PELRTLEVS 89

Query: 356 NNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP 415
            NQLT S+      L+ L   S    +L         A    L  L +  N L   T LP
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQL---TSLP 137

Query: 416 VNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHL 475
                P L  LS+S   ++  P        L  L   +NQ+   +P          L  L
Sbjct: 138 --VLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTS-LPMLPSG-----LQEL 186

Query: 476 NLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNM 535
           ++S N L  +  LP   L  L   +N L  S+P LP  L  + VS N+L+  +P+    +
Sbjct: 187 SVSDNQLASLPTLP-SELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLT-SLPVLPSEL 243

Query: 536 SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQL 595
             +    +S N L   +P   +   L  L +  N     +P++    S  T +NL  N L
Sbjct: 244 KEL---MVSGNRLT-SLPMLPSG--LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 596 EGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL 638
                 +L   +          R +    +       L +   
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  132 bits (333), Expect = 3e-32
 Identities = 73/351 (20%), Positives = 121/351 (34%), Gaps = 71/351 (20%)

Query: 321 RLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSS 380
             +    + +  + L  T+P  L     + ++ + +N LT S+     EL  L    +S 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTL---EVSG 90

Query: 381 NNLSGNVEL-YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF 439
           N L+    L  +   L  L         L     LP       L  L +    ++  P  
Sbjct: 91  NQLT---SLPVLPPGLLELSIFSNPLTHL---PALPSG-----LCKLWIFGNQLTSLPVL 139

Query: 440 LRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLR 499
                 LQ L +SDNQ+   +P          L  L   +N LT + +LP   L+ L + 
Sbjct: 140 PPG---LQELSVSDNQLAS-LPALPSE-----LCKLWAYNNQLTSLPMLP-SGLQELSVS 189

Query: 500 SNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
            N L  S+P LP  L  +   NN+L+  +P     +  +    +S N L   +P   +  
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLTS-LPVLPSE- 242

Query: 560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI 619
                                    L  L ++ N+L  S+P+       L  L V  N++
Sbjct: 243 -------------------------LKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQL 273

Query: 620 NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
               P  L  LS    + L  N    P++   T     ++      +    
Sbjct: 274 T-RLPESLIHLSSETTVNLEGN----PLS-ERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (324), Expect = 6e-31
 Identities = 67/342 (19%), Positives = 125/342 (36%), Gaps = 58/342 (16%)

Query: 178 LSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNK--NLTSVFPKVNWSSPLRFMDLY 235
            +    L++G  GL  ++P+ +    ++  L++  N   +L ++ P+      LR +++ 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPE------LRTLEVS 89

Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNL--------------QQLRHLD 281
           G N + S+P     L +L+       +    +PS L  L                L+ L 
Sbjct: 90  G-NQLTSLPVLPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVLPPGLQELS 147

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
           +S+N+    +P + + L +L      NNQL   +    S L  L    +S N L  ++P+
Sbjct: 148 VSDNQLA-SLPALPSELCKL---WAYNNQLTS-LPMLPSGLQEL---SVSDNQLA-SLPT 198

Query: 342 GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGL 401
                  L  +   NN+LT S+    S    L +L +S N L+      +      L  L
Sbjct: 199 LP---SELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLT-----SLPVLPSELKEL 246

Query: 402 DLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIP 461
            +S N L   T LP       L  LS+    ++  P+ L        ++L  N +     
Sbjct: 247 MVSGNRL---TSLP--MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 462 NWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503
             +       +         +   ++      R       + 
Sbjct: 302 QALRE-----ITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (293), Expect = 4e-27
 Identities = 76/377 (20%), Positives = 136/377 (36%), Gaps = 55/377 (14%)

Query: 79  HLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNS 138
              +LN+  +    + +        ++  L +  ++ +  +PA    L    +L++SGN 
Sbjct: 41  GNAVLNVGESGL--TTLPDCL--PAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQ 92

Query: 139 QLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPEN 198
                   L +L      L EL + S  ++  +P+  +    L  L +    L  S+P  
Sbjct: 93  --------LTSLPVLPPGLLELSIFSNPLT-HLPALPSG---LCKLWIFGNQLT-SLPVL 139

Query: 199 IFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDL 258
               P LQ L +S N+ L S+       S L  +  Y  N + S+P        L  L +
Sbjct: 140 P---PGLQELSVSDNQ-LASLPALP---SELCKLWAYN-NQLTSLPMLPSG---LQELSV 188

Query: 259 SYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSS 318
           S N  +  +P+  S L +   L   NN+ T  +P   A  + L  L  S N+L   +   
Sbjct: 189 SDNQLA-SLPTLPSELYK---LWAYNNRLT-SLP---ALPSGLKELIVSGNRLTS-LPVL 239

Query: 319 VSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSL 378
            S L  L    +S N L  ++P        L S+ +  NQLT  +  S+  L +   ++L
Sbjct: 240 PSELKEL---MVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 379 SSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPD 438
             N LS      +    + +         +    +    +S P  +     +      P 
Sbjct: 292 EGNPLSERTLQAL----REITSAPGYSGPIIRFDMAG--ASAPRETRALHLAAADWLVPA 345

Query: 439 FLRTQHRLQILDLSDNQ 455
                       +   +
Sbjct: 346 REGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (291), Expect = 6e-27
 Identities = 86/429 (20%), Positives = 145/429 (33%), Gaps = 115/429 (26%)

Query: 393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLS 452
                   L++  + L   T LP +    +++ L +   N++  P        L+ L++S
Sbjct: 37  CLNNGNAVLNVGESGL---TTLP-DCLPAHITTLVIPDNNLTSLPALPP---ELRTLEVS 89

Query: 453 DNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPP 512
            NQ+   +P          L  L++  N LT +  LP   L  L +  N L  S+P LPP
Sbjct: 90  GNQLTS-LPVLPPG-----LLELSIFSNPLTHLPALP-SGLCKLWIFGNQLT-SLPVLPP 141

Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFH 572
            L  +SVS+N+L+  +P     +  +      NN L   +P   +               
Sbjct: 142 GLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSG-------------- 182

Query: 573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSE 632
                       L  L+++DNQL  S+P        L  L   NNR+  + PA    L  
Sbjct: 183 ------------LQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGL-- 223

Query: 633 LQVLILRSNRFHGPITYSVTRFP--FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN 690
            + LI+  NR         T  P    +L+ L +S N  T  LP                
Sbjct: 224 -KELIVSGNRL--------TSLPVLPSELKELMVSGNRLTS-LP---------------- 257

Query: 691 SAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL 750
                 +                              ++ +  N+   R+PE +  L+S 
Sbjct: 258 -MLPSGL-----------------------------LSLSVYRNQLT-RLPESLIHLSSE 286

Query: 751 KGLNFSHNKLTGLIPYSLENLTQLESLD---LSSNKVAGEIPWQLTSLNFLQVLNLSQNQ 807
             +N   N L+     +L  +T         +  +      P +  +L+      L   +
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 808 LVGPIPQGK 816
              P P  +
Sbjct: 347 EGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (284), Expect = 4e-26
 Identities = 75/362 (20%), Positives = 121/362 (33%), Gaps = 51/362 (14%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
           H+T L +  + L  S+P+       P L+ L ++ N    + +         L+  +  +
Sbjct: 62  HITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPL 113

Query: 113 SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
           +             S L  L + GN         L +L      LQEL ++   ++    
Sbjct: 114 THLPAL-------PSGLCKLWIFGNQ--------LTSLPVLPPGLQELSVSDNQLA---- 154

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232
           S     S L  L   N  L  S+P        LQ L +S N+ L S+       S L  +
Sbjct: 155 SLPALPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQ-LASLPTLP---SELYKL 206

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
             Y      S+PA       L  L +S N  +  +P   S    L+ L +S N+ T  +P
Sbjct: 207 WAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLP 257

Query: 293 CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESI 352
                 + L  L    NQL   +  S+  L S  T+ L  N L+            + S 
Sbjct: 258 ---MLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ERTLQALRE--ITSA 310

Query: 353 DLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLST 412
              +  +        S       L L++ +          A            N+ + S 
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSL 370

Query: 413 LL 414
            L
Sbjct: 371 FL 372

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 8e-24
 Identities = 77/360 (21%), Positives = 123/360 (34%), Gaps = 86/360 (23%)

Query: 472 LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLS 531
              LN+  + LT +      ++  L +  N+L  S+P LPP L  + VS N+L+  +P+ 
Sbjct: 42  NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT-SLPVL 99

Query: 532 FCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLN 591
              +  +   +     L  +       S L  L +  N    S+P        L  L+++
Sbjct: 100 PPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLT-SLPVLPPG---LQELSVS 149

Query: 592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651
           DNQL  S+P        L  L   NN++  + P     L   Q L +  N+         
Sbjct: 150 DNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQL-------- 193

Query: 652 TRFP--FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
              P    +L  L   NN  T  LP                 A    +            
Sbjct: 194 ASLPTLPSELYKLWAYNNRLT-SLP-----------------ALPSGL------------ 223

Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLE 769
                              + +SGN+    +P +    + LK L  S N+LT L P    
Sbjct: 224 -----------------KELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSL-P---M 258

Query: 770 NLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGN 829
             + L SL +  N++   +P  L  L+    +NL  N L     Q  +  T +       
Sbjct: 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (264), Expect = 1e-23
 Identities = 65/367 (17%), Positives = 116/367 (31%), Gaps = 58/367 (15%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           L++  S L  ++P         H+  L +  N  N + +       P L  L +S +  +
Sbjct: 45  LNVGESGLT-TLPDCL----PAHITTLVIPDN--NLTSLPA---LPPELRTLEVSGNQLT 94

Query: 117 GQIPAEISHLSKLVSLDLSGNS---------QLGLDTPVLKALVQNLNELQELVL--NSV 165
             +P     L +L                  +L +    L +L      LQEL +  N +
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL 153

Query: 166 DMSYEVPSFLTNL--------------SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILS 211
                +PS L  L              S L  L + +  L  S+P        L  L   
Sbjct: 154 ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLP---SELYKLWAY 209

Query: 212 YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTL 271
            N+ LTS  P +     L+ + + G N + S+P     L     L +S N  +  +P   
Sbjct: 210 NNR-LTS-LPALPSG--LKELIVSG-NRLTSLPVLPSEL---KELMVSGNRLT-SLPMLP 260

Query: 272 SNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLS 331
           S L     L +  N+ T ++P    +L+  + ++   N L+     ++  + S       
Sbjct: 261 SGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA---PGY 313

Query: 332 YNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYM 391
              +          S   E+  L        +     E        +     + +     
Sbjct: 314 SGPI--IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLF 371

Query: 392 FAELKNL 398
              L   
Sbjct: 372 LDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 4e-12
 Identities = 48/261 (18%), Positives = 80/261 (30%), Gaps = 85/261 (32%)

Query: 552 IPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611
           +  CL N+    L++  +    ++P      + +T L + DN L  S+P        L  
Sbjct: 34  MRACL-NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE---LRT 85

Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
           L+V  N++  + P     L EL +                   P   L  L +  N+ T 
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL--------PALP-SGLCKLWIFGNQLT- 134

Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL 731
            LP                      +                               + +
Sbjct: 135 SLP-----------------VLPPGL-----------------------------QELSV 148

Query: 732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ 791
           S N+    +P +  +L  L      +N+LT L        + L+ L +S N        Q
Sbjct: 149 SDNQLA-SLPALPSELCKL---WAYNNQLTSL----PMLPSGLQELSVSDN--------Q 192

Query: 792 LTSL----NFLQVLNLSQNQL 808
           L SL    + L  L    N+L
Sbjct: 193 LASLPTLPSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 52/227 (22%)

Query: 584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
           R      +  +      +     +   VL+VG + +  T P  L   + +  L++  N  
Sbjct: 17  RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL 73

Query: 644 HGPITYSVTRFP--FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY 701
                   T  P   P+LR L++S N+ T  LP         +   +N            
Sbjct: 74  --------TSLPALPPELRTLEVSGNQLT-SLPVL-PPGLLELSIFSNPLTH-------- 115

Query: 702 GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLT 761
                            +  + +    + + GN+    +P        L+ L+ S N+L 
Sbjct: 116 -----------------LPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA 154

Query: 762 GLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
            L P     L     L   +N++   +P   +    LQ L++S NQL
Sbjct: 155 SL-PALPSELC---KLWAYNNQLT-SLPMLPSG---LQELSVSDNQL 193

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  139 bits (352), Expect = 1e-34
 Identities = 99/518 (19%), Positives = 175/518 (33%), Gaps = 66/518 (12%)

Query: 179 SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCN 238
              + +D  N  L   +P+++   P  + L LS N  ++ +                   
Sbjct: 31  ELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNS-ISELRMPD--------------- 71

Query: 239 FMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
                   +  LS+L  L LS+N             Q L +LD+S+N+    I      +
Sbjct: 72  --------ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-IS--CCPM 120

Query: 299 TQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESI--DLR 355
             L  LD S N  +  P+      L  L  + LS       +         L  I  DL 
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLV 179

Query: 356 NNQLTGSISNSISEL-VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
           +  + G  + S+      ++ L    N+L           L +L   ++  N  +   L+
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQ-------HRLQILDLSDNQIRGGIPNWIWNV 467
              S       L   +    E       +         ++ L++ +  I   I    +  
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 468 GKDTLNHLNLSHNFLTGIELLPW------KNLRYLDLRSNSLKG---SIPFLPPSLNFIS 518
            +  L  L + H                   +    L  +         P  P S  F++
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 519 VSNNKLSGEIPLSFCNMSSIFYVNLSNN---SLNGMIPPCLANSSLWFLDMRMNNF-HGS 574
            + N  +  +      +  +  + L  N   +   +       SSL  LD+ +N+    +
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419

Query: 575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ 634
             +T +    + +LNL+ N L GSV   L     ++VLD+ NNRI  + P  +  L  LQ
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 635 VLILRSNRFHGPITYSVTRFPF---PKLRILDLSNNEF 669
            L + SN+       SV    F     L+ + L +N +
Sbjct: 477 ELNVASNQLK-----SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  129 bits (326), Expect = 2e-31
 Identities = 99/444 (22%), Positives = 163/444 (36%), Gaps = 40/444 (9%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            +P       +   L LS N+ S      +S L +LR L LS+N+       +F     L
Sbjct: 45  HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLT 360
            +LD S+N+L    + S   + SL  + LS+N  +       F +   L  + L   +  
Sbjct: 103 EYLDVSHNRLQ---NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 361 GSISNSISEL-VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419
                 ++ L ++ I L L S ++ G     +      +L L    NSL    +    ++
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
             +L + ++   N       +     L       N                TL H+  + 
Sbjct: 220 LGHLQLSNIK-LNDENCQRLMTFLSELTRGPTLLN---------------VTLQHIETTW 263

Query: 480 NFLTGIELLPW-KNLRYLDLRSNSLKGSIPFLPPSLNFIS--------VSNNKLSGEIPL 530
                +    W + + YL++ + ++   I     + +  +        V N         
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 531 SFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
            +   + +    LS +    +   C  + SS  FL+   N F  S+ Q  S   RL  L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 590 LNDNQLE--GSVPLSLVNCSFLEVLDVGNNRIN-GTFPAWLGALSELQVLILRSNRFHGP 646
           L  N L+    V L   N S LE LDV  N +N   +         + VL L SN     
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---- 439

Query: 647 ITYSVTRFPFPKLRILDLSNNEFT 670
           +T SV R   PK+++LDL NN   
Sbjct: 440 LTGSVFRCLPPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  127 bits (321), Expect = 8e-31
 Identities = 101/558 (18%), Positives = 181/558 (32%), Gaps = 74/558 (13%)

Query: 237 CNFMGSIPASLGNLSQL-----TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
            +F+ ++   +G+++       + +D S  N + H+P  L    + + L LS N  +   
Sbjct: 12  FHFVCALALIVGSMTPFSNELESMVDYSNRNLT-HVPKDLPP--RTKALSLSQNSISELR 68

Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLE 350
               + L++L  L  S+N++                          ++   +F     LE
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-------------------------SLDFHVFLFNQDLE 103

Query: 351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
            +D+ +N+L    + S   + +L  L LS N+         F  L  L  L LS      
Sbjct: 104 YLDVSHNRLQ---NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 411 STLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD 470
             LLPV        +L L S +I              +L L  +     + +   N+  +
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS--LFSVQVNMSVN 218

Query: 471 TLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPL 530
            L HL LS+  L                R  +L         ++    +           
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL--------NVTLQHIETTWKCSVKLF 270

Query: 531 SFCNMSSIFYVNLSNNSLNGMIPPC------LANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
            F     + Y+N+ N ++   I          A  SL    ++   F  S    +S  + 
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
           + I  L+ +       +   + S    L+   N    +       L  LQ LIL+ N   
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 645 GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNE 704
               +         +  L+  +     +    Y +           S    N+  N    
Sbjct: 391 ---NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----ESILVLNLSSNMLTG 442

Query: 705 YYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLI 764
                L  K               +DL  N+    IP+ V  L +L+ LN + N+L  + 
Sbjct: 443 SVFRCLPPK------------VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489

Query: 765 PYSLENLTQLESLDLSSN 782
               + LT L+ + L  N
Sbjct: 490 DGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (285), Expect = 2e-26
 Identities = 73/414 (17%), Positives = 139/414 (33%), Gaps = 41/414 (9%)

Query: 55  TGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS 114
             LD+S +RL  +I        +  L+ L+L+FNDF+   +   F     L  L LS + 
Sbjct: 103 EYLDVSHNRLQ-NISCCP----MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157

Query: 115 FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
           F       ++HL  L  + L   S            + N   L  +   +   S +V   
Sbjct: 158 FRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           +  L  L   ++          EN  RL    + +      L      +  +        
Sbjct: 217 VNALGHLQLSNIK------LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP-----STLSNLQQLRHLDLSNNKFTG 289
                             + YL++     +  I       + + L+ L    + N  F  
Sbjct: 271 -----------QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PL 348
               +++   +++    S +              S   +  + N           ++   
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKR 378

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSL---SSNNLSGNVELYMFAELKNLLGLDLSH 405
           L+++ L+ N L  +         N+  L     S N+L+ +      A  +++L L+LS 
Sbjct: 379 LQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 406 NSLSLSTL--LPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIR 457
           N L+ S    LP       + +L L +  I   P  +     LQ L+++ NQ++
Sbjct: 438 NMLTGSVFRCLPPK-----VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.0 bits (231), Expect = 9e-20
 Identities = 73/428 (17%), Positives = 139/428 (32%), Gaps = 56/428 (13%)

Query: 397 NLLGLDLSHNSLSLSTLLPVN-SSFPYLSMLSLSSCNISEFPD--FLRTQHRLQILDLSD 453
               L LS NS+S   L   + S    L +L LS   I       FL  Q  L+ LD+S 
Sbjct: 53  RTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD-LEYLDVSH 109

Query: 454 NQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI----ELLPWKNLRYLDLRSNSLK----G 505
           N+++      + +     L HL+LS N    +    E      L +L L +   +     
Sbjct: 110 NRLQNISCCPMAS-----LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 506 SIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLD 565
            +  L  S   + + +  + G    S    ++     + + +    +   ++ ++L  L 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 566 MRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA 625
           +     +    Q                 +     L  +  ++   + +           
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVT----LQHIETTWKCSVKLFQF-------F 273

Query: 626 WLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRY--FQNFQA 683
           W   +  L +  L          ++ +      L I  + N  F       Y  F     
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 684 MMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEV 743
            M   +++                       ++M      + FT ++ + N F   + + 
Sbjct: 334 KMLSISDT---------------------PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 744 VGKLNSLKGLNFSHNKLTGL--IPYSLENLTQLESLDLSSNKVAGEIPWQLTSL-NFLQV 800
              L  L+ L    N L     +    +N++ LE+LD+S N +      +  +    + V
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432

Query: 801 LNLSQNQL 808
           LNLS N L
Sbjct: 433 LNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 19/90 (21%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           + +D S       +P+        K L+ S N ++ L    +  L++L  L LS N    
Sbjct: 34  SMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN---- 86

Query: 787 EIPWQLTSLNF--------LQVLNLSQNQL 808
               ++ SL+F        L+ L++S N+L
Sbjct: 87  ----RIRSLDFHVFLFNQDLEYLDVSHNRL 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  132 bits (335), Expect = 2e-34
 Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 13/245 (5%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC--IFANLT 299
           S+P  +   S  T L+L  N            L QL  L LS+N  + +  C       T
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQ 358
            L +LD S N +   +SS+   L  L  +   +++L       +F S   L  +D+ +  
Sbjct: 79  SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 359 LTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNS 418
              + +   + L +L  L ++ N+   N    +F EL+NL  LDLS   L     L   +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTA 194

Query: 419 --SFPYLSMLSLSSCNISEFPD-FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHL 475
             S   L +L++S  N         +  + LQ+LD S N I       + +    +L  L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFL 253

Query: 476 NLSHN 480
           NL+ N
Sbjct: 254 NLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  119 bits (301), Expect = 7e-30
 Identities = 58/287 (20%), Positives = 100/287 (34%), Gaps = 57/287 (19%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLS 111
             T L+L  ++L  S+P       L  L  L+L+ N  ++            +L +L+LS
Sbjct: 29  SATRLELESNKLQ-SLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
            +     + +    L +L  LD   +               NL ++ E            
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHS---------------NLKQMSE------------ 118

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLR 230
            S   +L +L  LD+ +   +      IF  L +L+ L ++ N    +            
Sbjct: 119 FSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENF----------- 166

Query: 231 FMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ 290
                       +P     L  LT+LDLS        P+  ++L  L+ L++S+N F   
Sbjct: 167 ------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 291 IPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLN 336
               +  L  L  LD+S N +             SL  + L+ N   
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 18/256 (7%)

Query: 401 LDLSHNSL-SLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRG 458
           +  +   L S+ T +P +      + L L S  +   P        +L  L LS N +  
Sbjct: 12  IRCNSKGLTSVPTGIPSS-----ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 459 GIPNWIWNVGKDTLNHLNLSHNFLTGIE--LLPWKNLRYLDLRSNSLKGSIPFLP----P 512
                  + G  +L +L+LS N +  +    L  + L +LD + ++LK    F       
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP-CLAN-SSLWFLDMRMNN 570
           +L ++ +S+          F  +SS+  + ++ NS      P       +L FLD+    
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 571 FHGSIPQ-TFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGA 629
               +    F+  S L +LN++ N             + L+VLD   N I  +    L  
Sbjct: 187 LE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 630 L-SELQVLILRSNRFH 644
             S L  L L  N F 
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 60/324 (18%), Positives = 112/324 (34%), Gaps = 78/324 (24%)

Query: 492 NLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           +   +   S  L  S+P  +P S   + + +NKL       F  ++ +  ++LS+N L+ 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 551 MIPPCLAN---SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL-VNC 606
                 ++   +SL +LD+  N    ++   F    +L  L+   + L+     S+ ++ 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 607 SFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSN 666
             L  LD+ +                    +  +  F+G             L +L ++ 
Sbjct: 126 RNLIYLDISHTHTR----------------VAFNGIFNG----------LSSLEVLKMAG 159

Query: 667 NEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIF 726
           N F        F   + +                                          
Sbjct: 160 NSFQENFLPDIFTELRNL------------------------------------------ 177

Query: 727 TTIDLSGNKFQGRIPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
           T +DLS  + + ++       L+SL+ LN SHN    L  +  + L  L+ LD S N + 
Sbjct: 178 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 786 GEIPWQLTSL-NFLQVLNLSQNQL 808
                +L    + L  LNL+QN  
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 21/225 (9%)

Query: 471 TLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLK----GSIPFLP-PSLNFISVSNN 522
           +   L L  N L  +          L  L L SN L      S       SL ++ +S N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 523 KLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCL--ANSSLWFLDMRMNNFHGSIPQTFS 580
            +   +  +F  +  + +++  +++L  M    +  +  +L +LD+   +   +    F+
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 581 KGSRLTILNLNDNQLEGSV-PLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR 639
             S L +L +  N  + +  P        L  LD+   ++    P    +LS LQVL + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 640 SNRFHGPITYSVTRFPF---PKLRILDLSNNEFTGVLPTRYFQNF 681
            N F      S+  FP+     L++LD S N        +  Q+F
Sbjct: 208 HNNFF-----SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 246

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  133 bits (336), Expect = 3e-34
 Identities = 72/320 (22%), Positives = 111/320 (34%), Gaps = 51/320 (15%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
           ++P  +      T LDL  N+ S         LQ L  L L NNK +      F+ L +L
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG 361
             L  S N L                           IP  L +S  L  + + +N++  
Sbjct: 105 QKLYISKNHLV-------------------------EIPPNLPSS--LVELRIHDNRIRK 137

Query: 362 SISNSISELVNLIDLSLSSNNL-SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSF 420
                 S L N+  + +  N L +   E   F  L  L  L +S   L   T +P +   
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL---TGIPKD-LP 192

Query: 421 PYLSMLSLSSCNISEFPDF-LRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
             L+ L L    I       L    +L  L L  NQIR      +  +    L  L+L +
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT--LRELHLDN 250

Query: 480 NFLTGIE--LLPWKNLRYLDLRSNSLK---------GSIPFLPPSLNFISVSNNKLSGEI 528
           N L+ +   L   K L+ + L +N++                    N IS+ NN +    
Sbjct: 251 NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 529 --PLSFCNMSSIFYVNLSNN 546
             P +F  ++    +   N 
Sbjct: 311 VQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  117 bits (295), Expect = 8e-29
 Identities = 66/314 (21%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
            P+   L+L  +  S     +   L  L +L L  N    +           L +LQ+L 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF----SPLRKLQKLY 108

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVF 220
           ++   +  E+P  L   SSL  L + +  ++  +P+ +F  L N+  + +  N    S F
Sbjct: 109 ISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 221 PKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHL 280
                                  P +   L  L YL +S    +  IP  L   + L  L
Sbjct: 165 E----------------------PGAFDGLK-LNYLRISEAKLT-GIPKDL--PETLNEL 198

Query: 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
            L +NK            ++L  L   +NQ+    + S+S L +L  ++L  N L+  +P
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 341 SGLFTSPLLESIDLRNNQLTGSISNSI-------SELVNLIDLSLSSNNLS-GNVELYMF 392
           +GL    LL+ + L  N +T  +  +         +      +SL +N +    V+   F
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 393 AELKNLLGLDLSHN 406
             + + L +   + 
Sbjct: 317 RCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  114 bits (287), Expect = 9e-28
 Identities = 61/334 (18%), Positives = 119/334 (35%), Gaps = 51/334 (15%)

Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383
            L  +  S   L   +P  +        +DL+NN ++    +    L +L  L L +N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF-LRT 442
           S  +    F+ L+ L  L +S N L     +P N     L  L +    I + P      
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHL---VEIPPNL-PSSLVELRIHDNRIRKVPKGVFSG 145

Query: 443 QHRLQILDLSDNQIR-GGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSN 501
              +  +++  N +   G     ++  K  LN+L +S   LTGI     + L  L L  N
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLK--LNYLRISEAKLTGIPKDLPETLNELHLDHN 203

Query: 502 SLKGSIP---FLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA 557
            ++ +I     L    L  + + +N++      S   + ++  ++L NN L+        
Sbjct: 204 KIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------- 254

Query: 558 NSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-------LSLVNCSFLE 610
                            +P        L ++ L+ N +   V           V  ++  
Sbjct: 255 ----------------RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 611 VLDVGNNRINGTF--PAWLGALSELQVLILRSNR 642
            + + NN +      PA    +++   +   + +
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 63/319 (19%), Positives = 105/319 (32%), Gaps = 78/319 (24%)

Query: 492 NLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           +LR +      LK ++P  + P    + + NN +S      F  +  ++ + L NN ++ 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS- 91

Query: 551 MIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLE 610
            I                        + FS   +L  L ++ N L   +P +L   S L 
Sbjct: 92  KIHE----------------------KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLV 126

Query: 611 VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
            L + +NRI          L  +  + +  N       +    F   KL  L +S  + T
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID 730
           G+ P    +                                                 + 
Sbjct: 186 GI-PKDLPETLN---------------------------------------------ELH 199

Query: 731 LSGNKFQGRIPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
           L  NK Q  I      + + L  L   HN++  +   SL  L  L  L L +NK++  +P
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 790 WQLTSLNFLQVLNLSQNQL 808
             L  L  LQV+ L  N +
Sbjct: 258 AGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 30/232 (12%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           L +  +R+   +P       L ++  + +  N    S   PG      L +L +S +  +
Sbjct: 128 LRIHDNRIR-KVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLT 176
             IP ++     L  L L  N    ++   L       ++L  L L    +       L+
Sbjct: 186 -GIPKDL--PETLNELHLDHNKIQAIELEDL----LRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 177 NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYG 236
            L +L  L L N  L   +P  +  L  LQ + L  N  +T V           F  +  
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVND-------FCPV-- 287

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHI--PSTLSNLQQLRHLDLSNNK 286
                         +    + L  N        P+T   +     +   N K
Sbjct: 288 --------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  134 bits (339), Expect = 1e-33
 Identities = 79/467 (16%), Positives = 165/467 (35%), Gaps = 69/467 (14%)

Query: 157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNL 216
               V  + +M          L++LTSLD  N  +   +   I +L  L  LI + N N+
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSN-NI 76

Query: 217 TSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ 276
           T++                           L   + LTYL    N  + ++   ++ L +
Sbjct: 77  TTL--------------------------DLSQNTNLTYLACDSNKLT-NLD--VTPLTK 107

Query: 277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
           L +L+   NK T ++    +    L++L+ + N L       VS    L  +    N   
Sbjct: 108 LTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI 161

Query: 337 GTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELK 396
             +     T   L ++D   N++T      +S+   L  L+  +NN++  ++     +  
Sbjct: 162 TKLDVTPQTQ--LTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD---LNQNI 212

Query: 397 NLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQI 456
            L  LD S N L   T + V +    L+    S   ++E      ++  L  L      +
Sbjct: 213 QLTFLDCSSNKL---TEIDV-TPLTQLTYFDCSVNPLTELDVSTLSK--LTTLHCIQTDL 266

Query: 457 RGGIPNWIWNVGKDT-LNHLNLSH-NFLTGIELLPWKNLRYLDLRSNSLKGSIPF-LPPS 513
                    ++  +T L +        +  +++     L  LD ++  +   +     P 
Sbjct: 267 L------EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELDLSQNPK 319

Query: 514 LNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG 573
           L ++ ++N +L+ E+ +S  + + +  ++  N  +           +L            
Sbjct: 320 LVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTIT 375

Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
              +T +  +    + ++ + L+       +      V D   N I 
Sbjct: 376 MPKETLT--NNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  127 bits (320), Expect = 3e-31
 Identities = 77/426 (18%), Positives = 145/426 (34%), Gaps = 43/426 (10%)

Query: 197 ENIFRLPNLQNLI-LSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255
            + F   N  + +  ++    T    +   ++ L  +D +  +    +   +  L+ LT 
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLAT-LTSLDCHNSSI-TDMTG-IEKLTGLTK 68

Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
           L  + NN +  +   LS    L +L   +NK T  +      LT+L++L+   N+L    
Sbjct: 69  LICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT--- 119

Query: 316 SSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLID 375
              VS+   L  +  + N+L   I     T   L  +D   N+    +   ++    L  
Sbjct: 120 KLDVSQNPLLTYLNCARNTLT-EIDVSHNTQ--LTELDCHLNKKITKL--DVTPQTQLTT 174

Query: 376 LSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE 435
           L  S N ++        ++ K L  L+   N++   T L + +    L+ L  SS  ++E
Sbjct: 175 LDCSFNKITE----LDVSQNKLLNRLNCDTNNI---TKLDL-NQNIQLTFLDCSSNKLTE 226

Query: 436 FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRY 495
               +    +L   D S N +       +       L  L+     L  I+L     L Y
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLTE-----LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279

Query: 496 LDLRSNSLKGSIPFL-PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP 554
                      +       L  +      ++    L       + Y+ L+N  L  +   
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTEL--D 334

Query: 555 CLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDV 614
              N+ L  L    N        +  K   L      + Q       +L N S    + V
Sbjct: 335 VSHNTKLKSLSCV-NAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSL--TIAV 390

Query: 615 GNNRIN 620
             + ++
Sbjct: 391 SPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  125 bits (317), Expect = 8e-31
 Identities = 89/488 (18%), Positives = 163/488 (33%), Gaps = 52/488 (10%)

Query: 66  GSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISH 125
           G   S +  F   +      A  +   +       +   L  L+   SS +  +   I  
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSIT-DMT-GIEK 62

Query: 126 LSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLD 185
           L+ L  L  + N+   LD       +     L  L  +S  ++  +   +T L+ LT L+
Sbjct: 63  LTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLN 112

Query: 186 LGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPA 245
                L      ++ + P L  L  + N  LT +   V+ ++ L  +D +    +  +  
Sbjct: 113 CDTNKLTKL---DVSQNPLLTYLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKLD- 165

Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
            +   +QLT LD S+N  +      +S  + L  L+   N  T ++        QL+FLD
Sbjct: 166 -VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLD 218

Query: 306 FSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISN 365
            S+N+L       V+ L  L     S N L   +     +   L ++      L      
Sbjct: 219 CSSNKLT---EIDVTPLTQLTYFDCSVNPLT-ELDVSTLSK--LTTLHCIQTDLL---EI 269

Query: 366 SISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSM 425
            ++    LI            ++         L  LD     +   T L + S  P L  
Sbjct: 270 DLTHNTQLIYFQAEGCR---KIKELDVTHNTQLYLLDCQAAGI---TELDL-SQNPKLVY 322

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
           L L++  ++E    +    +L+ L   +  I+    +         LN+   +      +
Sbjct: 323 LYLNNTELTELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKI---PALNNNFEAEGQTITM 376

Query: 486 ELLPWKNLRYLDLRSNSLK---GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
                 N       S  L    G+   + P    +            LS  N +  +   
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFT 436

Query: 543 LSNNSLNG 550
             N ++ G
Sbjct: 437 SENGAIVG 444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (276), Expect = 1e-25
 Identities = 61/457 (13%), Positives = 136/457 (29%), Gaps = 65/457 (14%)

Query: 396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQ 455
            N      +   +  +  +        L+ L   + +I++     +    L  L  + N 
Sbjct: 18  DNFASEVAAAFEMQATDTISE-EQLATLTSLDCHNSSITDMTGIEKLTG-LTKLICTSNN 75

Query: 456 IR----GGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP 511
           I         N         L +L    N LT +++ P   L YL+  +N L        
Sbjct: 76  ITTLDLSQNTN---------LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQN 126

Query: 512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNF 571
           P L +++ + N L+    +   + + +  ++   N            + L  LD   N  
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKI 182

Query: 572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALS 631
              +    S+   L  LN + N +     L L     L  LD  +N++       +  L+
Sbjct: 183 T-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLT 233

Query: 632 ELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNS 691
           +L       N         +      KL  L     +    +   +              
Sbjct: 234 QLTYFDCSVNPLT-----ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRK 287

Query: 692 AEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK 751
                  ++  +                         +D         +   + +   L 
Sbjct: 288 ----IKELDVTH-------------------NTQLYLLDCQAAGIT-ELD--LSQNPKLV 321

Query: 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGP 811
            L  ++ +LT L    + + T+L+SL   +  +  +    +  +  L     ++ Q +  
Sbjct: 322 YLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITM 376

Query: 812 IPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTE 848
             +    ++ +       +   G P++ +  +  V +
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (254), Expect = 8e-23
 Identities = 72/469 (15%), Positives = 140/469 (29%), Gaps = 84/469 (17%)

Query: 343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLD 402
            F      S      ++  + + S  +L  L  L   +++++   ++    +L  L  L 
Sbjct: 14  WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLI 70

Query: 403 LSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPN 462
            + N++   T L + S    L+ L+  S  ++     +    +L  L+   N++     +
Sbjct: 71  CTSNNI---TTLDL-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS 124

Query: 463 WIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSN 521
                    L +LN + N LT I++     L  LD   N     +   P   L  +  S 
Sbjct: 125 -----QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179

Query: 522 NKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSK 581
           NK++    L       +  +N   N++  +      N  L FLD   N     I    + 
Sbjct: 180 NKITE---LDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLT-EID--VTP 231

Query: 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641
            ++LT  + + N L     L +   S L  L      +       L   ++L        
Sbjct: 232 LTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285

Query: 642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY 701
           R    +  +       +L +LD      T  L          +   N             
Sbjct: 286 RKIKELDVT----HNTQLYLLDCQAAGITE-LDLSQNPKLVYLYLNNTE----------- 329

Query: 702 GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLT 761
                                    T +D+S                 LK L+  +  + 
Sbjct: 330 ------------------------LTELDVS-------------HNTKLKSLSCVNAHIQ 352

Query: 762 GLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVG 810
                 +  +  L +   +  +        LT+ +    ++       G
Sbjct: 353 DFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  134 bits (339), Expect = 1e-33
 Identities = 61/259 (23%), Positives = 99/259 (38%), Gaps = 16/259 (6%)

Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQ 310
           +Q + +  +    S  +P  +      R+L+L  N         F +L  L  L    N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 311 LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSI-S 368
           +      + + L SL T+ L  N L   IPSG F     L  + LRNN +  SI +   +
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 369 ELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSL 428
            + +L+ L L        +    F  L NL  L+L   ++     +P  +    L  L +
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEM 225

Query: 429 SSCNISEFPDF-LRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE- 486
           S  +  E           L+ L + ++Q+     N    +    L  LNL+HN L+ +  
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS--LVELNLAHNNLSSLPH 283

Query: 487 --LLPWKNLRYLDLRSNSL 503
               P + L  L L  N  
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (295), Expect = 4e-28
 Identities = 66/295 (22%), Positives = 108/295 (36%), Gaps = 46/295 (15%)

Query: 46  TCDMMTGHVTGLDLSCSRLH-GSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFP 103
           +C      V      C+R     +P         + + LNL  N+     I    F    
Sbjct: 51  SCSNQFSKV-----VCTRRGLSEVPQGIP----SNTRYLNLMENNI--QMIQADTFRHLH 99

Query: 104 NLAHLNLSVSSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVL 162
           +L  L L  +S   QI     + L+ L +L+L  N    + +       + L++L+EL L
Sbjct: 100 HLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAF----EYLSKLRELWL 154

Query: 163 NSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFP 221
            +  +          + SL  LDLG       I E  F  L NL+ L L    N+  +  
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDM-- 211

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
                                   +L  L  L  L++S N+F    P +   L  L+ L 
Sbjct: 212 -----------------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
           + N++ +      F  L  L  L+ ++N L+       + L  LV ++L +N  N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (251), Expect = 2e-22
 Identities = 56/322 (17%), Positives = 110/322 (34%), Gaps = 72/322 (22%)

Query: 323 HSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN 382
           +    +  +   L+  +P G+ ++     ++L  N +    +++   L +L  L L  N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRT 442
           +   +E+  F  L +L  L+L  N L   T++P                           
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWL---TVIP---------------------SGAFEY 145

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS 502
             +L+ L L +N I         ++     N +                +L  LDL    
Sbjct: 146 LSKLRELWLRNNPIE--------SIPSYAFNRV---------------PSLMRLDLGEL- 181

Query: 503 LKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLW 562
                               KL      +F  + ++ Y+NL   ++   +P       L 
Sbjct: 182 -------------------KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLE 221

Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
            L+M  N+F    P +F   S L  L + ++Q+      +    + L  L++ +N ++  
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 623 FPAWLGALSELQVLILRSNRFH 644
                  L  L  L L  N ++
Sbjct: 282 PHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 51/271 (18%), Positives = 91/271 (33%), Gaps = 54/271 (19%)

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
           V  +   L+  +P  +  S+  +L++  NN       TF     L +L L  N +     
Sbjct: 59  VVCTRRGLSE-VPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV 116

Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---P 657
            +    + L  L++ +N +          LS+L+ L LR+N        S+  + F   P
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-----SIPSYAFNRVP 171

Query: 658 KLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNM 717
            L  LDL   +    +    F+    +                                 
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNL--------------------------------- 198

Query: 718 EMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777
                      ++L     +  +P +   L  L+ L  S N    + P S   L+ L+ L
Sbjct: 199 ---------KYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
            + +++V+         L  L  LNL+ N L
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 58/281 (20%), Positives = 99/281 (35%), Gaps = 45/281 (16%)

Query: 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
               S +  +   +SE P  + +    + L+L +N I+    +   ++    L  L L  
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHH--LEVLQLGR 108

Query: 480 NFLTGIE---LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536
           N +  IE        +L  L+L  N L   IP                      +F  +S
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLT-VIP--------------------SGAFEYLS 147

Query: 537 SIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQ 594
            +  + L NN +  +         SL  LD+        I    F     L  LNL    
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 595 LEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRF 654
           ++  +P +L     LE L++  N      P     LS L+ L + +++        + R 
Sbjct: 208 IK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-----LIERN 260

Query: 655 PF---PKLRILDLSNNEFTGVLPTRYFQNFQAM----MHGN 688
            F     L  L+L++N  +  LP   F   + +    +H N
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK 783
           N F+ +  +       +P+ +   ++ + LN   N +  +   +  +L  LE L L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 784 VAGEIPWQ-LTSLNFLQVLNLSQNQL 808
           +  +I       L  L  L L  N L
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWL 135

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  131 bits (332), Expect = 7e-33
 Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 14/258 (5%)

Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQ 310
           +Q + +     N    +P  +S     R L+L  N+        F +L  L  L  S N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 311 LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISE 369
           +      + + L +L T+ L  N L  TIP+G F     L+ + LRNN +    S + + 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 370 LVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLS 429
           + +L  L L        +    F  L NL  L+L+  +L     +P  +    L  L LS
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---REIPNLTPLIKLDELDLS 215

Query: 430 SCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-- 486
             ++S       +    LQ L +  +QI+    N   N+    L  +NL+HN LT +   
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS--LVEINLAHNNLTLLPHD 273

Query: 487 -LLPWKNLRYLDLRSNSL 503
              P  +L  + L  N  
Sbjct: 274 LFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (288), Expect = 3e-27
 Identities = 71/295 (24%), Positives = 109/295 (36%), Gaps = 46/295 (15%)

Query: 46  TCDMMTGHVTGLDLSCSRLH-GSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFP 103
           +C      V      C R +   +P   S     + ++LNL  N      I    F    
Sbjct: 40  SCSNQFSKV-----ICVRKNLREVPDGIS----TNTRLLNLHENQI--QIIKVNSFKHLR 88

Query: 104 NLAHLNLSVSSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVL 162
           +L  L LS +     I     + L+ L +L+L  N +L   T +       L++L+EL L
Sbjct: 89  HLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN-RL---TTIPNGAFVYLSKLKELWL 143

Query: 163 NSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFP 221
            +  +          + SL  LDLG       I E  F  L NL+ L L+   NL  +  
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREI-- 200

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
                                   +L  L +L  LDLS N+ S   P +   L  L+ L 
Sbjct: 201 -----------------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
           +  ++        F NL  L  ++ ++N L        + LH L  I+L +N  N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 61/322 (18%), Positives = 111/322 (34%), Gaps = 72/322 (22%)

Query: 323 HSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN 382
           +    +     +L   +P G+ T+     ++L  NQ+     NS   L +L  L LS N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTN--TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRT 442
           +   +E+  F  L NL  L+L  N L+                 ++              
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLT-----------------TIP-------NGAFVY 134

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS 502
             +L+ L L +N I         ++     N +                +LR LDL    
Sbjct: 135 LSKLKELWLRNNPIE--------SIPSYAFNRI---------------PSLRRLDLGEL- 170

Query: 503 LKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLW 562
                               +LS     +F  +S++ Y+NL+  +L   IP       L 
Sbjct: 171 -------------------KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLD 210

Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
            LD+  N+     P +F     L  L +  +Q++     +  N   L  +++ +N +   
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 623 FPAWLGALSELQVLILRSNRFH 644
                  L  L+ + L  N ++
Sbjct: 271 PHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 53/275 (19%), Positives = 97/275 (35%), Gaps = 36/275 (13%)

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
           V     +L   +P  + +++   L++  N        +F     L IL L+ N +     
Sbjct: 48  VICVRKNLRE-VPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI 105

Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---P 657
            +    + L  L++ +NR+          LS+L+ L LR+N        S+  + F   P
Sbjct: 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-----SIPSYAFNRIP 160

Query: 658 KLRILDLSNNEFTGVLPTRYFQNFQAMMH---GNNNSAEGGNMYINYGNEYYSAILTVKG 714
            LR LDL   +    +    F+    + +      N                  I  +  
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN---------------LREIPNLTP 205

Query: 715 VNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQL 774
                   L     +DLSGN      P     L  L+ L    +++  +   + +NL  L
Sbjct: 206 --------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 775 ESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV 809
             ++L+ N +        T L+ L+ ++L  N   
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 66/281 (23%), Positives = 103/281 (36%), Gaps = 45/281 (16%)

Query: 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
               S +     N+ E PD + T    ++L+L +NQI+    N   ++    L  L LS 
Sbjct: 42  SNQFSKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRH--LEILQLSR 97

Query: 480 NFLTGIE---LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536
           N +  IE        NL  L+L  N L  +IP                      +F  +S
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLT-TIP--------------------NGAFVYLS 136

Query: 537 SIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQ 594
            +  + L NN +  +         SL  LD+        I    F   S L  LNL    
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 595 LEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRF 654
           L   +P +L     L+ LD+  N ++   P     L  LQ L +  ++        + R 
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-----VIERN 249

Query: 655 PF---PKLRILDLSNNEFTGVLPTRYFQNFQAM----MHGN 688
            F     L  ++L++N  T +LP   F     +    +H N
Sbjct: 250 AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK 783
           N F+ +       +  +P+ +    + + LN   N++  +   S ++L  LE L LS N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 784 VAGEIPWQLTSLNFLQVLNLSQNQL 808
           +          L  L  L L  N+L
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRL 124

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  127 bits (321), Expect = 4e-32
 Identities = 57/312 (18%), Positives = 102/312 (32%), Gaps = 39/312 (12%)

Query: 178 LSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGC 237
                     +  L  SIP  +     +++L LS N  +T +                  
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNN-RITYISNSD-------------- 71

Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
                    L     L  L L+ N  +     + S+L  L HLDLS N  +      F  
Sbjct: 72  ---------LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122

Query: 298 LTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLR 355
           L+ L+FL+   N       +S  S L  L  + +        I    F     LE +++ 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 356 NNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTL-- 413
            + L      S+  + N+  L L        +         ++  L+L    L       
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 414 LPVNSSF-----PYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
           L    +           + ++  ++ +    L     L  L+ S NQ++  +P+ I++  
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD-R 299

Query: 469 KDTLNHLNLSHN 480
             +L  + L  N
Sbjct: 300 LTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  119 bits (301), Expect = 2e-29
 Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 23/278 (8%)

Query: 119 IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNL 178
           IP+ ++    + SLDLS N    +    L    Q    LQ LVL S  ++       ++L
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNGINTIEEDSFSSL 99

Query: 179 SSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKV--NWSSPLRFMDLY 235
            SL  LDL    L  ++  + F+ L +L  L L  N    ++      +  + L+ + + 
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVG 157

Query: 236 GCNFMGSIPA-SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294
             +    I       L+ L  L++  ++   + P +L ++Q + HL L   +    +   
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 295 FANLTQLSFLDFSNNQLNGPISSSVS--------RLHSLVTIYLSYNSLNGTIPSGLFTS 346
               + +  L+  +  L+    S +S        +  +   + ++  SL   +   L   
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 347 PLLESIDLRNNQLTGSISNSI-SELVNLIDLSLSSNNL 383
             L  ++   NQL  S+ + I   L +L  + L +N  
Sbjct: 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.0 bits (234), Expect = 9e-21
 Identities = 67/390 (17%), Positives = 131/390 (33%), Gaps = 98/390 (25%)

Query: 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC 293
           +   +   S   +  +  +      S  + +  IPS L+  + ++ LDLSNN+ T     
Sbjct: 14  IISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNS 70

Query: 294 IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESI 352
                  L  L  ++N +N                         TI    F+S   LE +
Sbjct: 71  DLQRCVNLQALVLTSNGIN-------------------------TIEEDSFSSLGSLEHL 105

Query: 353 DLRNNQLTGSISNSI-SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLS 411
           DL  N L+ ++S+S    L +L  L+L  N      E  +F+ L  L  L + +      
Sbjct: 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-- 162

Query: 412 TLLPVN--SSFPYLSMLSLSSCNISEFPDF-LRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
           T +     +   +L  L + + ++  +    L++   +  L L   Q           + 
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI--------LLL 214

Query: 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEI 528
           +  ++  +               ++  L+LR   L              +   ++LS   
Sbjct: 215 EIFVDVTS---------------SVECLELRDTDLD-------------TFHFSELSTGE 246

Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
             S     +   V +++ SL                          + +  ++ S L  L
Sbjct: 247 TNSLIKKFTFRNVKITDESLF------------------------QVMKLLNQISGLLEL 282

Query: 589 NLNDNQLEGSVPLSLV-NCSFLEVLDVGNN 617
             + NQL+ SVP  +    + L+ + +  N
Sbjct: 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.3 bits (227), Expect = 7e-20
 Identities = 53/260 (20%), Positives = 99/260 (38%), Gaps = 28/260 (10%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLS 111
           ++  L L+ + ++ +I  DS   SL  L+ L+L++N    S +S   F    +L  LNL 
Sbjct: 77  NLQALVLTSNGIN-TIEEDS-FSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLL 132

Query: 112 VSSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYE 170
            + +       + SHL+KL  L +         T + +     L  L+EL +++ D+   
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTF---TKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 171 VPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
            P  L ++ +++ L L        + E       +++ L L      T  F ++   S  
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSEL---STG 245

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
                           SL        + ++  +    +   L+ +  L  L+ S N+   
Sbjct: 246 ET-------------NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

Query: 290 QIPCIFANLTQLSFLDFSNN 309
               IF  LT L  +    N
Sbjct: 292 VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 63/358 (17%), Positives = 110/358 (30%), Gaps = 89/358 (24%)

Query: 329 YLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388
             S  SLN +IPSGL  +  ++S+DL NN++T   ++ +   VNL  L L+SN ++  +E
Sbjct: 37  KGSSGSLN-SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 389 LYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQI 448
              F+ L +L  LDLS+N L   + L  +S F  LS                     L  
Sbjct: 93  EDSFSSLGSLEHLDLSYNYL---SNLS-SSWFKPLS--------------------SLTF 128

Query: 449 LDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP 508
           L+L  N  +  +           L  L + +        +  K+   L            
Sbjct: 129 LNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDT--FTKIQRKDFAGL------------ 173

Query: 509 FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRM 568
                L  + +  + L    P S  ++ ++ ++ L       ++                
Sbjct: 174 ---TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE-------------- 215

Query: 569 NNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLG 628
                         S +  L L D  L+      L                       L 
Sbjct: 216 --------IFVDVTSSVECLELRDTDLDTFHFSELSTGET----------------NSLI 251

Query: 629 ALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686
                + + +                    L  L+ S N+    +P   F    ++  
Sbjct: 252 KKFTFRNVKITDESL---FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK 305

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 63/373 (16%), Positives = 121/373 (32%), Gaps = 103/373 (27%)

Query: 427 SLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE 486
             SS +++  P  L     ++ LDLS+N+I     + +       L  L L+ N +  IE
Sbjct: 37  KGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVN--LQALVLTSNGINTIE 92

Query: 487 ---LLPWKNLRYLDLRSNSLKGSIP---FLP-PSLNFISVSNNKLSGEIPLS-FCNMSSI 538
                   +L +LDL  N L  ++    F P  SL F+++  N        S F +++ +
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGS 598
             + + N      I                        + F+  + L  L ++ + L+  
Sbjct: 152 QILRVGNMDTFTKIQR----------------------KDFAGLTFLEELEIDASDLQSY 189

Query: 599 VPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK 658
            P SL +   +  L +   +       ++   S ++ L LR                   
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD------------------ 231

Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
               DL    F+  L T    +                                      
Sbjct: 232 ---TDLDTFHFSE-LSTGETNSLIKKFT-------------------------------- 255

Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
                  F  + ++      ++ +++ +++ L  L FS N+L  +     + LT L+ + 
Sbjct: 256 -------FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

Query: 779 LSSNKVAGEIPWQ 791
           L +N      PW 
Sbjct: 308 LHTN------PWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 53/303 (17%), Positives = 100/303 (33%), Gaps = 47/303 (15%)

Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
             +  +         S+ SLN  IP  L   ++  LD+  N           +   L  L
Sbjct: 24  NQASLSCDRNGICKGSSGSLNS-IPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQAL 81

Query: 589 NLNDNQL---EGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645
            L  N +   E     SL +   LE LD+  N ++    +W   LS L  L L  N +  
Sbjct: 82  VLTSNGINTIEEDSFSSLGS---LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 646 PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAM----MHGNNNSAEGGNMYINY 701
               S+      KL+IL + N +    +  + F     +    +  ++            
Sbjct: 139 LGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD------------ 185

Query: 702 GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVV-GKLNSLKGLNFSHNKL 760
                     ++    +  K +   + + L   +    + E+     +S++ L      L
Sbjct: 186 ----------LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234

Query: 761 TG--------LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPI 812
                         SL       ++ ++   +  ++   L  ++ L  L  S+NQL   +
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 813 PQG 815
           P G
Sbjct: 293 PDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
            ++DLS N+        + +  +L+ L  + N +  +   S  +L  LE LDLS N ++ 
Sbjct: 55  KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS- 113

Query: 787 EIPWQL-TSLNFLQVLNLSQNQLVGPIPQGKQFH 819
            +       L+ L  LNL  N     + +   F 
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS 146

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  128 bits (323), Expect = 1e-31
 Identities = 87/433 (20%), Positives = 159/433 (36%), Gaps = 81/433 (18%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC-IFANLTQ 300
            +PA +       Y+DLS N+ +    ++ S LQ L+ L +        I    F  L+ 
Sbjct: 27  ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 301 LSFLDFSNNQLNGPISSSV-SRLHSLVTIYLSYNSLNGT-IPSGLFTS-PLLESIDLRNN 357
           L  L    NQ    + +   + L +L  + L+  +L+G  +    F     LE + LR+N
Sbjct: 81  LIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 358 QLTGSISNSI--SELVNLIDLSLSSNNLSGNVELYMFAEL--KNLLGLDLSHNSLSLSTL 413
            +   I  +     +     L L+ N +  ++          K+   L LS  +L     
Sbjct: 140 NIK-KIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQ---- 193

Query: 414 LPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDT-L 472
                    ++   L                 +  LDLS N  +  +    ++    T +
Sbjct: 194 --------DMNEYWLGWEKCGNP----FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 473 NHLNLSHNFLTGIEL---------------LPWKNLRYLDLRSN---SLKGSIPFLPPSL 514
             L LS+++  G                  L    ++  DL  +   +L  S+      L
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 515 NFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS--SLWFLDMRMNNFH 572
             ++++ N+++     +F  ++ +  +NLS N L G I   +  +   L  LD+  N+  
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 573 GSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALS 631
            ++  Q+F     L  L L+ NQL+ SVP                   +G F      L+
Sbjct: 361 -ALGDQSFLGLPNLKELALDTNQLK-SVP-------------------DGIF----DRLT 395

Query: 632 ELQVLILRSNRFH 644
            LQ + L +N + 
Sbjct: 396 SLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  128 bits (323), Expect = 1e-31
 Identities = 91/387 (23%), Positives = 150/387 (38%), Gaps = 41/387 (10%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
           HV  +DLS + +   +   +S   L  LQ L +          +  F    +L  L L  
Sbjct: 31  HVNYVDLSLNSI-AELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 113 SSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALV-QNLNELQELVLNSVDMSYE 170
           + F  Q+     + L+ L  L L+  +   LD  VL     + L  L+ LVL   ++   
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCN---LDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 171 VP-SFLTNLSSLTSLDLGNCGLQGSIPENIF-----------RLPNLQNLILSYNKNLTS 218
            P SF  N+     LDL    ++ SI E              RL ++    ++       
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 219 VFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL-------------DLSYNNFSG 265
                  ++ +  +DL G  F  S+     +    T +                + NF  
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 266 HIPSTLSNLQ--QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV-SRL 322
               T   L+   ++  DLS +K    +  +F++ T L  L  + N++N  I  +    L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGL 322

Query: 323 HSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSN 381
             L+ + LS N L G+I S +F +   LE +DL  N +      S   L NL +L+L +N
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

Query: 382 NLSGNVELYMFAELKNLLGLDLSHNSL 408
            L  +V   +F  L +L  + L  N  
Sbjct: 382 QLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  127 bits (322), Expect = 2e-31
 Identities = 84/443 (18%), Positives = 140/443 (31%), Gaps = 80/443 (18%)

Query: 163 NSVDMSY----EVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLT 217
            +         +VP    ++     +DL    +   + E  F RL +LQ L +       
Sbjct: 13  YNAICINRGLHQVPELPAHV---NYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGL 68

Query: 218 SVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
            +                              LS L  L L YN F        + L  L
Sbjct: 69  VIRNNT-----------------------FRGLSSLIILKLDYNQFLQLETGAFNGLANL 105

Query: 278 RHLDLSNNKFTGQI--PCIFANLTQLSFLDFSNNQLNGPISSSV-SRLHSLVTIYLSYNS 334
             L L+     G +     F  LT L  L   +N +     +S    +     + L++N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 335 LNGTIPSGLF---TSPLLESIDLRNNQLTGSISNSISE--------LVNLIDLSLSSNNL 383
           +  +I               + L +  L       +            ++  L LS N  
Sbjct: 166 VK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 384 SGNVELYMFAELKN--LLGLDLSHNSLSLSTLL------PVNSSF-----PYLSMLSLSS 430
             ++    F  +    +  L LS++    S+        P N +F       +    LS 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 431 CNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL-- 487
             I             L+ L L+ N+I     N  W +    L  LNLS NFL  I+   
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH--LLKLNLSQNFLGSIDSRM 342

Query: 488 ---LPWKNLRYLDLRSNSLKGSIP---FLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
              L    L  LDL  N ++ ++    FL  P+L  +++  N+L       F  ++S+  
Sbjct: 343 FENLD--KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

Query: 541 VNLSNNSLNGMIPPCLANSSLWF 563
           + L  N  +     C      + 
Sbjct: 400 IWLHTNPWD-----CSCPRIDYL 417

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (306), Expect = 2e-29
 Identities = 80/418 (19%), Positives = 137/418 (32%), Gaps = 66/418 (15%)

Query: 266 HIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV-SRLHS 324
            +P   +++    ++DLS N         F+ L  L FL          I ++    L S
Sbjct: 24  QVPELPAHVN---YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 325 LVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSI--SNSISELVNLIDLSLSSN 381
           L+ + L YN     + +G F     LE + L    L G++   N    L +L  L L  N
Sbjct: 81  LIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 382 NLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLR 441
           N+        F  ++    LDL+ N +          S     +L+    +         
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVK---------SICEEDLLNFQGKH--------- 181

Query: 442 TQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSN 501
                 +L LS   ++     W+                           ++  LDL  N
Sbjct: 182 ----FTLLRLSSITLQDMNEYWLGWEKCGNPFKN---------------TSITTLDLSGN 222

Query: 502 SLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSL 561
             K           F +++  K+   I  +  NM S F    +    +      L  S +
Sbjct: 223 GFKE----SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-NFKDPDNFTFKGLEASGV 277

Query: 562 WFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI-- 619
              D+  +     +   FS  + L  L L  N++      +    + L  L++  N +  
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 620 --NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---PKLRILDLSNNEFTGV 672
             +  F      L +L+VL L  N        ++    F   P L+ L L  N+   V
Sbjct: 338 IDSRMF----ENLDKLEVLDLSYNHIR-----ALGDQSFLGLPNLKELALDTNQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (285), Expect = 9e-27
 Identities = 93/515 (18%), Positives = 161/515 (31%), Gaps = 126/515 (24%)

Query: 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
              N     Q+P + A++  +   D S N +     +S SRL  L  + +   +    I 
Sbjct: 16  ICINRGLH-QVPELPAHVNYV---DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR 71

Query: 341 SGLFTS-PLLESIDLRNNQLTGSISNSI-SELVNLIDLSLSSNNL-SGNVELYMFAELKN 397
           +  F     L  + L  NQ    +     + L NL  L+L+  NL    +    F  L +
Sbjct: 72  NNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 398 LLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIR 457
           L  L L  N++    + P  S F  +                     R  +LDL+ N+++
Sbjct: 131 LEMLVLRDNNIK--KIQP-ASFFLNMR--------------------RFHVLDLTFNKVK 167

Query: 458 GGIPNWIW-NVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNF 516
             I      N        L LS   L  +           +      K   PF   S+  
Sbjct: 168 S-ICEEDLLNFQGKHFTLLRLSSITLQDMN----------EYWLGWEKCGNPFKNTSITT 216

Query: 517 ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIP 576
           + +S N     +   F +  +   +     S +  +     +++  F D     F G   
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN--FKDPDNFTFKGL-- 272

Query: 577 QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVL 636
               + S +   +L+ +++   +     + + LE L +  N IN                
Sbjct: 273 ----EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN---------------- 312

Query: 637 ILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696
            +  N F G             L  L+LS N     + +R F+N   +            
Sbjct: 313 KIDDNAFWG----------LTHLLKLNLSQNFLGS-IDSRMFENLDKL------------ 349

Query: 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFS 756
                                           +DLS N  +    +    L +LK L   
Sbjct: 350 ------------------------------EVLDLSYNHIRALGDQSFLGLPNLKELALD 379

Query: 757 HNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ 791
            N+L  +     + LT L+ + L +N      PW 
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTN------PWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (273), Expect = 3e-25
 Identities = 81/468 (17%), Positives = 137/468 (29%), Gaps = 124/468 (26%)

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
           +  +DL  N +      S S L +L  L +        +    F  L +L+ L L +N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 409 SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
                L    +F  L+                     L++L L+   + G +      + 
Sbjct: 92  ---LQLE-TGAFNGLA--------------------NLEVLTLTQCNLDGAV------LS 121

Query: 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLK----GSIPFLPPSLNFISVSNNKL 524
            +    L                +L  L LR N++K     S        + + ++ NK+
Sbjct: 122 GNFFKPL---------------TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 525 SGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
                            N             L  SS+   DM              K + 
Sbjct: 167 K-------SICEEDLL-NFQGKHFTL-----LRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 585 LTILNLNDNQLEGSVP---LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641
           +T L+L+ N  + S+       +  + ++ L + N+   G+                   
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHT 259

Query: 642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY 701
            F  P  ++        ++  DLS ++    L    F +F  +                 
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDL----------------- 301

Query: 702 GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLT 761
                                      + L+ N+           L  L  LN S N L 
Sbjct: 302 -------------------------EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 762 GLIPYSLENLTQLESLDLSSNKVAGEIPWQL-TSLNFLQVLNLSQNQL 808
            +     ENL +LE LDLS N +   +  Q    L  L+ L L  NQL
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 67/351 (19%), Positives = 133/351 (37%), Gaps = 35/351 (9%)

Query: 471 TLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIP---FLP-PSLNFISVSNNK 523
            +N+++LS N +  +        ++L++L +   +    I    F    SL  + +  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 524 LSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP--CLAN-SSLWFLDMRMNNFHGSIPQT-F 579
                  +F  ++++  + L+  +L+G +         +SL  L +R NN     P + F
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 580 SKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR 639
               R  +L+L  N+++      L+N        +  + I       L  ++E  +   +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT------LQDMNEYWLGWEK 204

Query: 640 SNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ--NFQAMMHGNNNSAEGGNM 697
                   +          +  LDLS N F   +  R+F       +     +++     
Sbjct: 205 CGNPFKNTS----------ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH 757
              + N       T KG+        +   T DLS +K    +  V      L+ L  + 
Sbjct: 255 SFGHTNFKDPDNFTFKGLEA------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 758 NKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           N++  +   +   LT L  L+LS N +         +L+ L+VL+LS N +
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP-YSLENLTQLESLDLSSNKVA 785
             +DLS N           +L  L+ L         +I   +   L+ L  L L  N+  
Sbjct: 33  NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 786 GEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQF 818
                    L  L+VL L+Q  L G +  G  F
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  114 bits (287), Expect = 1e-26
 Identities = 55/304 (18%), Positives = 115/304 (37%), Gaps = 40/304 (13%)

Query: 351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410
           S +   N ++G+ ++  S        +L   N +  V L     +     L L+  +L  
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL-- 71

Query: 411 STLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD 470
            + LP ++  P +++L ++   +   P+       L+ LD  DN++   +P    +    
Sbjct: 72  -SSLP-DNLPPQITVLEITQNALISLPELP---ASLEYLDACDNRLS-TLPELPAS---- 121

Query: 471 TLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPL 530
            L HL++ +N LT +  LP   L Y++  +N L   +P LP SL  +SV NN+L+  +P 
Sbjct: 122 -LKHLDVDNNQLTMLPELP-ALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLT-FLPE 177

Query: 531 SFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNL 590
              ++ ++   ++S N L   +P                       +             
Sbjct: 178 LPESLEAL---DVSTNLLES-LPA-------------------VPVRNHHSEETEIFFRC 214

Query: 591 NDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYS 650
            +N++   +P ++++      + + +N ++      L   +           F       
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 651 VTRF 654
            T  
Sbjct: 274 NTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (283), Expect = 4e-26
 Identities = 54/328 (16%), Positives = 111/328 (33%), Gaps = 47/328 (14%)

Query: 274 LQQLRHLDLSNNKFTGQIPCI----FANLTQLSFLDFSNNQLNGPISS-SVSRLHSLVTI 328
           L    +  LS N F   I       F+   +           N  +S      ++    +
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 329 YLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388
            L+  +L+ ++P  L     +  +++  N L  S+    +   +L  L    N LS    
Sbjct: 65  QLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPA---SLEYLDACDNRLS---- 113

Query: 389 LYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQI 448
             +     +L  LD+ +N L   T+LP       L  ++  +  ++  P+       L++
Sbjct: 114 -TLPELPASLKHLDVDNNQL---TMLP--ELPALLEYINADNNQLTMLPELPT---SLEV 164

Query: 449 LDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP 508
           L + +NQ+   +P    +     L  L++S N L  +  +P +N                
Sbjct: 165 LSVRNNQLTF-LPELPES-----LEALDVSTNLLESLPAVPVRNHH-------------- 204

Query: 509 FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRM 568
               +  F     N+++  IP +  ++     + L +N L+  I   L+  +        
Sbjct: 205 -SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 569 NNFHGSIPQTFSKGSRLTILNLNDNQLE 596
             +        +   R     +     E
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPE 290

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  110 bits (276), Expect = 3e-25
 Identities = 68/361 (18%), Positives = 119/361 (32%), Gaps = 64/361 (17%)

Query: 103 PNLAHLNLSVSSFSGQ---IPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQ 158
           P   + +LS +SF        A+  S   K     L G                N NE  
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGE---------------NRNEAV 50

Query: 159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTS 218
            L+                ++  + L L    L  S+P+N+   P +  L ++ N  L S
Sbjct: 51  SLLKEC------------LINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNA-LIS 94

Query: 219 VFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLR 278
             P     + L ++D    N + ++P    +   L +LD+  N  +  +P   + L+   
Sbjct: 95  -LP--ELPASLEYLDACD-NRLSTLPELPAS---LKHLDVDNNQLT-MLPELPALLE--- 143

Query: 279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
           +++  NN+ T  +P      T L  L   NNQL   +      L +L    +S N L  +
Sbjct: 144 YINADNNQLT-MLP---ELPTSLEVLSVRNNQLTF-LPELPESLEAL---DVSTNLLE-S 194

Query: 339 IPSGLFTSPLLES----IDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAE 394
           +P+    +   E        R N++T  I  +I  L     + L  N LS  +       
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI----RES 249

Query: 395 LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDN 454
           L         H      ++     +  +  +    +    E      +Q           
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHA 309

Query: 455 Q 455
            
Sbjct: 310 N 310

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 2e-23
 Identities = 80/447 (17%), Positives = 147/447 (32%), Gaps = 84/447 (18%)

Query: 372 NLIDLS-LSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS 430
           N   LS  S  N         F+         L   + + +  L         S L L+ 
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 431 CNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW 490
            N+S  PD L  Q  + +L+++ N +   +P    +     L +L+   N L+ +  LP 
Sbjct: 69  LNLSSLPDNLPPQ--ITVLEITQNALIS-LPELPAS-----LEYLDACDNRLSTLPELP- 119

Query: 491 KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
            +L++LD+ +N L   +P LP  L +I+  NN+L+  +P    ++  +   ++ NN L  
Sbjct: 120 ASLKHLDVDNNQLT-MLPELPALLEYINADNNQLT-MLPELPTSLEVL---SVRNNQLTF 174

Query: 551 MIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLE 610
            +P    +                          L  L+++ N LE S+P   V     E
Sbjct: 175 -LPELPES--------------------------LEALDVSTNLLE-SLPAVPVRNHHSE 206

Query: 611 ----VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSN 666
                     NRI    P  + +L     +                           L +
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTI--------------------------ILED 239

Query: 667 NEFTGVLPTRYFQ-NFQAMMHGNNNSAEGGNMYINYGNEYYSAILTV---KGVNMEMEKV 722
           N  +  +     Q   Q   HG        +   N  +   +  +T    +    ++ ++
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
            + F   + +         + +    S +  +    ++       LE L+    L   S 
Sbjct: 300 WHAFEHEEHANTFSA--FLDRLSDTVSARNTSGFREQVAAW----LEKLSASAELRQQSF 353

Query: 783 KVAGEIPWQLTSLNFLQVLNLSQNQLV 809
            VA +          L   NL +  LV
Sbjct: 354 AVAADATESCEDRVALTWNNLRKTLLV 380

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.2 bits (239), Expect = 1e-20
 Identities = 50/355 (14%), Positives = 109/355 (30%), Gaps = 48/355 (13%)

Query: 57  LDLSCSRLHGSIPS--DSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS 114
             LS +  + +I         +    +   L   + N +            + L L+  +
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 115 FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
            S  +P  +    ++  L+++ N+        L +L +    L+ L      +S  +P  
Sbjct: 71  LS-SLPDNL--PPQITVLEITQNA--------LISLPELPASLEYLDACDNRLS-TLPEL 118

Query: 175 LTNL-----------------SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLT 217
             +L                 + L  ++  N  L   +PE      +L+ L +  N+ LT
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LT 173

Query: 218 SVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLT----YLDLSYNNFSGHIPSTLSN 273
            +         L  +D+   N + S+PA             +     N  + HIP  + +
Sbjct: 174 FLPE---LPESLEALDVST-NLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
           L     + L +N  + +I    +  T               +S                 
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTA 286

Query: 334 SLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388
                  S +         +   N  + +  + +S+ V+  + S     ++  +E
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQVAAWLE 340

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.7 bits (217), Expect = 5e-18
 Identities = 64/410 (15%), Positives = 117/410 (28%), Gaps = 115/410 (28%)

Query: 410 LSTLLPVN--SSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNV 467
           +S +LP+N   S    S  +  S   +++        +  +   + N+    +   + N 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59

Query: 468 GKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGE 527
                + L L+   L+ +       +  L++  N+L  S+P LP SL ++   +N+LS  
Sbjct: 60  ---QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLS-T 114

Query: 528 IPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTI 587
           +P    ++  +   ++ NN L  M+P   A                           L  
Sbjct: 115 LPELPASLKHL---DVDNNQLT-MLPELPAL--------------------------LEY 144

Query: 588 LNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPI 647
           +N ++NQL   +P    +   LEVL V NN++    P                       
Sbjct: 145 INADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLPELPE------------------- 180

Query: 648 TYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYS 707
                      L  LD+S N     LP    +                            
Sbjct: 181 ----------SLEALDVSTNLLES-LPAVPVR---------------------------- 201

Query: 708 AILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYS 767
                                     N+    IPE +  L+    +    N L+  I  S
Sbjct: 202 -----------NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 768 LENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQ 817
           L   T     D    ++   +     +     + +               
Sbjct: 250 LSQQTAQP--DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 1e-15
 Identities = 57/325 (17%), Positives = 112/325 (34%), Gaps = 60/325 (18%)

Query: 507 IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF----YVNLSNNSLNGMI--PPCLANSS 560
           +  + P  N  S+S N     I  ++ +  S +       L   + N  +        + 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
              L +   N   S+P       ++T+L +  N L  S+P    +   LE LD  +NR++
Sbjct: 61  FSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS 113

Query: 621 GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFP--FPKLRILDLSNNEFTGVLPTRYF 678
            T P    +L  L    + +N+         T  P     L  ++  NN+ T +LP    
Sbjct: 114 -TLPELPASLKHLD---VDNNQL--------TMLPELPALLEYINADNNQLT-MLPEL-P 159

Query: 679 QNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG 738
            + + +   NN                    LT       + ++      +D+S N  + 
Sbjct: 160 TSLEVLSVRNNQ-------------------LT------FLPELPESLEALDVSTNLLE- 193

Query: 739 RIPEVVGKLNSLK----GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS 794
            +P V  + +  +          N++T + P ++ +L    ++ L  N ++  I   L+ 
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 795 LNFLQVLNLSQNQLVGPIPQGKQFH 819
                  +  +        Q    H
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 7e-13
 Identities = 55/299 (18%), Positives = 96/299 (32%), Gaps = 56/299 (18%)

Query: 542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKG--SRLTILNLNDNQLEGSV 599
           N   N+++G      +    W                  +   ++ + L LN   L  S+
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SL 74

Query: 600 PLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFP--FP 657
           P +L     + VL++  N +  + P        L+ L    NR         +  P    
Sbjct: 75  PDNL--PPQITVLEITQNAL-ISLPELPA---SLEYLDACDNRL--------STLPELPA 120

Query: 658 KLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNM 717
            L+ LD+ NN+ T +LP       + +   NN                    LT      
Sbjct: 121 SLKHLDVDNNQLT-MLPEL-PALLEYINADNNQ-------------------LT------ 153

Query: 718 EMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES- 776
            + ++      + +  N+    +PE+     SL+ L+ S N L  L P         E  
Sbjct: 154 MLPELPTSLEVLSVRNNQLT-FLPEL---PESLEALDVSTNLLESL-PAVPVRNHHSEET 208

Query: 777 ---LDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGL 832
                   N++   IP  + SL+    + L  N L   I +     T   D +   +  
Sbjct: 209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 45/328 (13%), Positives = 87/328 (26%), Gaps = 75/328 (22%)

Query: 52  GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS 111
             +  ++   ++L   +P          L++L++  N                       
Sbjct: 140 ALLEYINADNNQLT-MLPE-----LPTSLEVLSVRNNQLT-------------------- 173

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
                  +P     L     LD+S N                L  L  + +         
Sbjct: 174 ------FLPELPESLEA---LDVSTN---------------LLESLPAVPVR-------- 201

Query: 172 PSFLTNL-SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLR 230
                +   +          +   IPENI  L     +IL  N  L+S   + + S    
Sbjct: 202 ---NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP-LSS-RIRESLSQQTA 255

Query: 231 FMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ 290
             D +G     S+     N       D     F  +  S +S +      +   N F+  
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-A 314

Query: 291 IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE 350
                ++            Q    +++ + +L +   +     ++             L 
Sbjct: 315 FLDRLSDTVSARNTSGFREQ----VAAWLEKLSASAELRQQSFAVAADATESCEDRVALT 370

Query: 351 SIDLRNNQLT-----GSISNSISELVNL 373
             +LR   L      G   N    L++L
Sbjct: 371 WNNLRKTLLVHQASEGLFDNDTGALLSL 398

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  111 bits (281), Expect = 3e-26
 Identities = 86/474 (18%), Positives = 153/474 (32%), Gaps = 90/474 (18%)

Query: 251 SQLTYLDLSYNNFS-GHIPSTLSNLQQLRHLDLSNNKFTGQ----IPCIFANLTQLSFLD 305
             +  LD+     S       L  LQQ + + L +   T      I         L+ L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 306 FSNNQLNGP----ISSSVSRLH-SLVTIYLSYNSLNGT----IPSGLFTSPLLESIDLRN 356
             +N+L       +   +      +  + L    L G     + S L T P L+ + L +
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 357 NQLTGSISNSISELV-----NLIDLSLSSNNLSGNVELYMFAELK---NLLGLDLSHNSL 408
           N L  +    + E +      L  L L   +LS      + + L+   +   L +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 409 S------LSTLLPVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRLQILDLSDNQIR 457
           +      L   L  +     L  L L SC ++          + ++  L+ L L  N++ 
Sbjct: 183 NEAGVRVLCQGLKDSPCQ--LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 458 GGIPNWIWNVGKD---TLNHLNLSHNFLTGI------ELLPW-KNLRYLDLRSNSLKGS- 506
                 +          L  L +    +T         +L   ++L+ L L  N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 507 IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA-NSSLWFLD 565
              L  +L         L     +  C+ ++    + S+          LA N  L  L 
Sbjct: 301 ARLLCETLLEPGCQLESLW----VKSCSFTAACCSHFSS---------VLAQNRFLLELQ 347

Query: 566 MRMNNFHGSIPQTFSKG-----SRLTILNLNDNQL--EGSVPLS--LVNCSFLEVLDVGN 616
           +  N    +  +   +G     S L +L L D  +       L+  L+    L  LD+ N
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
           N +     A +  L E     +R                   L  L L +  ++
Sbjct: 408 NCLG---DAGILQLVES----VRQPG--------------CLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  107 bits (269), Expect = 1e-24
 Identities = 76/444 (17%), Positives = 149/444 (33%), Gaps = 76/444 (17%)

Query: 80  LQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLS 135
           +Q L++   + + +  +           + L     +      I + +     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 136 GNSQLGLDTPVLKALVQNLNE----LQELVLNSVDMSYE----VPSFLTNLSSLTSLDLG 187
            N    L    +  ++Q L      +Q+L L +  ++      + S L  L +L  L L 
Sbjct: 65  SNE---LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 188 NCGLQGSIPENIFRL-----PNLQNLILSYN-------KNLTSVFPKVNWSSPLRFMDLY 235
           +  L  +  + +          L+ L L Y        + L SV  +       + + + 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL-RAKPD--FKELTVS 178

Query: 236 GCNF----MGSIPASLG-NLSQLTYLDLSYNNFS----GHIPSTLSNLQQLRHLDLSNNK 286
             +     +  +   L  +  QL  L L     +      +   +++   LR L L +NK
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 287 FTGQ-----IPCIFANLTQLSFLDFSNNQLNGP----ISSSVSRLHSLVTIYLSYNSLNG 337
                     P +    ++L  L      +       +   +    SL  + L+ N L  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 338 T-----IPSGLFTSPLLESIDLRNNQLTG----SISNSISELVNLIDLSLSSNNLSGNVE 388
                   + L     LES+ +++   T       S+ +++   L++L +S+N L     
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 389 LYMFAELKN----LLGLDLSHNSLS------LSTLLPVNSSFPYLSMLSLSSCNISE--- 435
             +   L      L  L L+   +S      L+  L  N S   L  L LS+  + +   
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS---LRELDLSNNCLGDAGI 415

Query: 436 --FPDFLRTQH-RLQILDLSDNQI 456
               + +R     L+ L L D   
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  103 bits (260), Expect = 2e-23
 Identities = 77/386 (19%), Positives = 134/386 (34%), Gaps = 67/386 (17%)

Query: 179 SSLTSLDLGNCGLQ-GSIPENIFRLPNLQNLILSYN-------KNLTSVFPKVNWSSPLR 230
             + SLD+    L      E +  L   Q + L          K+++S       +  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV---NPALA 59

Query: 231 FMDLYGCNF----MGSIPASLGNLS-QLTYLDLSYNNFS----GHIPSTLSNLQQLRHLD 281
            ++L         +  +   L   S ++  L L     +    G + STL  L  L+ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 282 LSNNKFTGQ-IPCIFANL----TQLSFLDFSNNQLN----GPISSSVSRLHSLVTIYLSY 332
           LS+N      +  +   L     +L  L      L+     P++S +        + +S 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 333 NSLNGT----IPSGLFTSPL-LESIDLRNNQLT----GSISNSISELVNLIDLSLSSNNL 383
           N +N      +  GL  SP  LE++ L +  +T      +   ++   +L +L+L SN L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 384 --SGNVEL--YMFAELKNLLGLDLSHNSLS------LSTLLPVNSSFPYLSMLSLSSCNI 433
              G  EL   +      L  L +    ++      L  +L    S   L  LSL+   +
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES---LKELSLAGNEL 296

Query: 434 SE-----FPDFLRTQH-RLQILDLSDNQIRGGIPNWIWNVGKD--TLNHLNLSHNFLT-- 483
            +       + L     +L+ L +          +   +V      L  L +S+N L   
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 484 GIELL------PWKNLRYLDLRSNSL 503
           G+  L      P   LR L L    +
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 87/512 (16%), Positives = 156/512 (30%), Gaps = 123/512 (24%)

Query: 346 SPLLESIDLRNNQLT-GSISNSISELVNLIDLSLSSNNLS--GNVEL-YMFAELKNLLGL 401
           S  ++S+D++  +L+    +  +  L     + L    L+     ++         L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 402 DLSHNSLS------LSTLLPVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRLQILD 450
           +L  N L       +   L   S    +  LSL +C ++          LRT   LQ L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSC--KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 451 LSDNQIRGGIPNWIWNVGKD---TLNHLNLSHNFLT-------GIELLPWKNLRYLDLRS 500
           LSDN +       +     D    L  L L +  L+          L    + + L + +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 501 NSLKGS-IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
           N +  + +  L   L         L     L  C ++S    +L     +         +
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALK----LESCGVTSDNCRDLCGIVAS--------KA 227

Query: 560 SLWFLDMRMNNFHGSIPQTFSKG-----SRLTILNLNDNQL--EGSVPLS--LVNCSFLE 610
           SL  L +  N            G     SRL  L + +  +  +G   L   L     L+
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 611 VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
            L +  N +        GA    + L                  P  +L  L + +  FT
Sbjct: 288 ELSLAGNELGDE-----GARLLCETL----------------LEPGCQLESLWVKSCSFT 326

Query: 671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID 730
                                A              S   +V   N    + L     + 
Sbjct: 327 ---------------------AACC-----------SHFSSVLAQN----RFL---LELQ 347

Query: 731 LSGNKFQG----RIPEVVGKLNS-LKGLNFSHNKLT----GLIPYSLENLTQLESLDLSS 781
           +S N+ +      + + +G+  S L+ L  +   ++      +  +L     L  LDLS+
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 782 NKV----AGEIPWQLTSLNF-LQVLNLSQNQL 808
           N +      ++   +      L+ L L     
Sbjct: 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (265), Expect = 3e-25
 Identities = 51/258 (19%), Positives = 86/258 (33%), Gaps = 36/258 (13%)

Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQ 310
                           +P  +      + + L  N+ +      F     L+ L   +N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 311 LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSI-S 368
           L    +++ + L  L  + LS N+   ++    F     L ++ L    L   +   +  
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR 126

Query: 369 ELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSL 428
            L  L  L L  N L   +    F +L NL  L L  N +   + +P             
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI---SSVP------------- 169

Query: 429 SSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-- 486
                       R  H L  L L  N++    P+   ++G+  L  L L  N L+ +   
Sbjct: 170 --------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR--LMTLYLFANNLSALPTE 219

Query: 487 -LLPWKNLRYLDLRSNSL 503
            L P + L+YL L  N  
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  104 bits (261), Expect = 8e-25
 Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 11/222 (4%)

Query: 118 QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTN 177
            +P  I   +    + L GN    +         +    L  L L+S  ++    +  T 
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTG 78

Query: 178 LSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSP-LRFMDLY 235
           L+ L  LDL +     S+    F  L  L  L L     L  + P +      L+++ L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQ 137

Query: 236 GCNFMGSIPA-SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294
             N + ++P  +  +L  LT+L L  N  S         L  L  L L  N+     P  
Sbjct: 138 D-NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 295 FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
           F +L +L  L    N L+   + +++ L +L  + L+ N   
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  103 bits (260), Expect = 1e-24
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 21/234 (8%)

Query: 327 TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
           T       L   +P G+  +   + I L  N+++   + S     NL  L L SN L+  
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-R 70

Query: 387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSF---PYLSMLSLSSCNISEFP-DFLRT 442
           ++   F  L  L  LDLS N+  L ++ P  ++F     L  L L  C + E      R 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQ-LRSVDP--ATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLR 499
              LQ L L DN ++  +P+  +      L HL L  N ++ +         +L  L L 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 500 SNSLKGSIP---FLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549
            N +   +    F     L  + +  N LS     +   + ++ Y+ L++N   
Sbjct: 186 QNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (253), Expect = 1e-23
 Identities = 57/261 (21%), Positives = 90/261 (34%), Gaps = 60/261 (22%)

Query: 55  TGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLSVS 113
             + L  +R+   +P+ S   +  +L IL L  N    + I    FT    L  L+LS +
Sbjct: 35  QRIFLHGNRIS-HVPAAS-FRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDN 90

Query: 114 SFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
           +    +       L +L +L L                   L EL              P
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRC---------------GLQELG-------------P 122

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLRF 231
                L++L  L L +  LQ ++P++ FR L NL +L L  N+ ++SV            
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR-ISSV------------ 168

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
                         +   L  L  L L  N  +   P    +L +L  L L  N  +   
Sbjct: 169 -----------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 292 PCIFANLTQLSFLDFSNNQLN 312
               A L  L +L  ++N   
Sbjct: 218 TEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 55/282 (19%), Positives = 93/282 (32%), Gaps = 56/282 (19%)

Query: 533 CNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLND 592
           C        +     L   +P  +  ++   + +  N        +F     LTIL L+ 
Sbjct: 8   CYNEPKVTTSCPQQGLQA-VPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 593 NQLEGSVPLSLVNCSFLEVLDVGNN-RINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651
           N L      +    + LE LD+ +N ++    PA    L  L  L L            +
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-----EL 120

Query: 652 TRFPF---PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSA 708
               F     L+ L L +N     LP   F++   +                        
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL------------------------ 155

Query: 709 ILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSL 768
                             T + L GN+           L+SL  L    N++  + P++ 
Sbjct: 156 ------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 769 ENLTQLESLDLSSNKVAGEIPWQ-LTSLNFLQVLNLSQNQLV 809
            +L +L +L L +N ++  +P + L  L  LQ L L+ N  V
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 44/225 (19%), Positives = 78/225 (34%), Gaps = 20/225 (8%)

Query: 470 DTLNHLNLSHNFLTGI-ELLPWKNLRYLDLRSNSLKGSIP---FLP-PSLNFISVSNNKL 524
           +     +     L  +   +P    + + L  N +   +P   F    +L  + + +N L
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP-AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL 68

Query: 525 SGEIPLSFCNMSSIFYVNLSNNSLNGMIPP-CLAN-SSLWFLDMRMNNFHGSIPQ-TFSK 581
           +     +F  ++ +  ++LS+N+    + P        L  L +        +    F  
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127

Query: 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641
            + L  L L DN L+     +  +   L  L +  NRI+         L  L  L+L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 642 RFHGPITYSVTRFPF---PKLRILDLSNNEFTGVLPTRYFQNFQA 683
           R        V    F    +L  L L  N  +  LPT      +A
Sbjct: 188 RVA-----HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRA 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 56/306 (18%), Positives = 90/306 (29%), Gaps = 83/306 (27%)

Query: 491 KNLRYLDLRSNSLKGSIP-FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549
           +           L+ ++P  +P +   I +  N++S     SF    ++  + L +N L 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL- 68

Query: 550 GMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDN-QLEGSVPLSLVNCSF 608
             I                          F+  + L  L+L+DN QL    P +      
Sbjct: 69  ARIDA----------------------AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 609 LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---PKLRILDLS 665
           L  L +    +    P     L+ LQ L L+ N        ++    F     L  L L 
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALPDDTFRDLGNLTHLFLH 161

Query: 666 NNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNI 725
            N  +  +P R F+                                           L+ 
Sbjct: 162 GNRIS-SVPERAFRG------------------------------------------LHS 178

Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
              + L  N+     P     L  L  L    N L+ L   +L  L  L+ L L+ N   
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN--- 235

Query: 786 GEIPWQ 791
              PW 
Sbjct: 236 ---PWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
            T        Q  +P   G   + + +    N+++ +   S      L  L L SN +A 
Sbjct: 14  VTTSCPQQGLQ-AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA- 69

Query: 787 EIPWQ-LTSLNFLQVLNLSQNQLVGPIPQG 815
            I     T L  L+ L+LS N  +  +   
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  108 bits (270), Expect = 2e-24
 Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 24/284 (8%)

Query: 269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTI 328
                  +    +L     T  +      L  +  +  +N+ +       +  L ++  +
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKL 70

Query: 329 YLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388
           +L+ N L       L     L  + L  N++   +S+ + +L  L  LSL  N +S   +
Sbjct: 71  FLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS---D 123

Query: 389 LYMFAELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQ 447
           +     L  L  L L +N ++ ++ L    S    L  LSL    IS+    L    +LQ
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVL----SRLTKLDTLSLEDNQISDIV-PLAGLTKLQ 178

Query: 448 ILDLSDNQIRGGIPNWIWNVGKDT-LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGS 506
            L LS N I       +  +     L+ L L         +    NL   +   N   GS
Sbjct: 179 NLYLSKNHIS-----DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN-TDGS 232

Query: 507 IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           +       +        +   +P     +S IFY  ++      
Sbjct: 233 LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  102 bits (254), Expect = 1e-22
 Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 19/270 (7%)

Query: 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSY 212
              E  +  L     S         L+S+  +   N  ++ S+ + I  LPN+  L L+ 
Sbjct: 19  AFAETIKDNLK--KKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
           NK LT + P  N  + L ++ L   N +  +  SL +L +L  L L +N  S  I + L 
Sbjct: 75  NK-LTDIKPLTNLKN-LGWLFLDE-NKIKDLS-SLKDLKKLKSLSLEHNGIS-DI-NGLV 128

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332
           +L QL  L L NNK T       + LT+L  L   +NQ++      ++ L  L  +YLS 
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSK 184

Query: 333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNV---EL 389
           N +  +    L     L+ ++L + +      N  S LV    +  +  +L       + 
Sbjct: 185 NHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419
             + +      L    N +S     PV   
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.7 bits (240), Expect = 8e-21
 Identities = 52/262 (19%), Positives = 99/262 (37%), Gaps = 22/262 (8%)

Query: 123 ISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT 182
               ++ +  +L   S     T         LN + +++ N+ D+       +  L ++T
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV--QGIQYLPNVT 68

Query: 183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGS 242
            L L    L   I + +  L NL  L L  NK +  +    +    L+ + L   N +  
Sbjct: 69  KLFLNGNKLT-DI-KPLTNLKNLGWLFLDENK-IKDLSSLKDLKK-LKSLSLEH-NGISD 123

Query: 243 IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLS 302
           I   L +L QL  L L  N  +    + LS L +L  L L +N+ +  +P   A LT+L 
Sbjct: 124 ING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178

Query: 303 FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGS 362
            L  S N ++     +++ L +L  + L          +      +  ++   +  L   
Sbjct: 179 NLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-- 234

Query: 363 ISNSISELVNLIDLSLSSNNLS 384
               IS+  +    ++  +   
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.8 bits (222), Expect = 1e-18
 Identities = 49/367 (13%), Positives = 109/367 (29%), Gaps = 52/367 (14%)

Query: 373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN 432
           + +    S  +    +++        +  +L   S+   T     +    +  +  ++ +
Sbjct: 1   MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSD 54

Query: 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDT-LNHLNLSHNFLTGIELLPW- 490
           I      ++    +  L L+ N++       I  +     L  L L  N +  +  L   
Sbjct: 55  IKSV-QGIQYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDENKIKDLSSLKDL 108

Query: 491 KNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548
           K L+ L L  N +   I  L   P L  + + NNK++    LS   ++ +  ++L +N +
Sbjct: 109 KKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI 165

Query: 549 NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF 608
           + ++P                          +  ++L  L L+ N +     L+      
Sbjct: 166 SDIVP-------------------------LAGLTKLQNLYLSKNHISDLRALA--GLKN 198

Query: 609 LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNE 668
           L+VL++ +             L     +         P   S            ++  + 
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS----DDGDYEKPNVKWHL 254

Query: 669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTT 728
                   +       +      A           E Y+    V G  ++ +       T
Sbjct: 255 PEFTNEVSFIFYQ--PVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312

Query: 729 IDLSGNK 735
                 K
Sbjct: 313 APKPPTK 319

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.0 bits (220), Expect = 2e-18
 Identities = 60/319 (18%), Positives = 107/319 (33%), Gaps = 68/319 (21%)

Query: 76  SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS---VSSFSGQIPAEISHLSKLVSL 132
           +       NL     + +          ++  +  +   + S  G     I +L  +  L
Sbjct: 19  AFAETIKDNLKKK--SVTDAVT-QNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKL 70

Query: 133 DLSGNSQLGLDTPVLKALVQNLNELQELVLNS---VDMSYEVPSFLTNLSSLTSLDLGNC 189
            L+GN    +        + NL  L  L L+     D+S      L +L  L SL L + 
Sbjct: 71  FLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS-----SLKDLKKLKSLSLEHN 119

Query: 190 GLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN 249
           G+   I   +  LP L++L L  NK +T +                           L  
Sbjct: 120 GIS-DI-NGLVHLPQLESLYLGNNK-ITDITV-------------------------LSR 151

Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI--FANLTQLSFLDFS 307
           L++L  L L  N  S  I   L+ L +L++L LS N     I  +   A L  L  L+  
Sbjct: 152 LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELF 205

Query: 308 NNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSI 367
           + +      +  S L    T+       +G++ +    S   +  D     +   +    
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKN----TDGSLVTPEIIS---DDGDYEKPNVKWHLPEFT 258

Query: 368 SELVNLIDLSLSSNNLSGN 386
           +E+  +    ++       
Sbjct: 259 NEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 3e-18
 Identities = 54/345 (15%), Positives = 112/345 (32%), Gaps = 53/345 (15%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS- 111
                +L       S+    +   L  +  +    +  +   +  G    PN+  L L+ 
Sbjct: 22  ETIKDNLK----KKSVTDAVTQNELNSIDQIIANNS--DIKSVQ-GIQYLPNVTKLFLNG 74

Query: 112 --VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY 169
             ++         +++L  L  L L  N    L +      +++L +L+ L L    +S 
Sbjct: 75  NKLTDIKP-----LTNLKNLGWLFLDENKIKDLSS------LKDLKKLKSLSLEHNGIS- 122

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
              + L +L  L SL LGN  +  +    + RL  L  L L  N+ ++ + P        
Sbjct: 123 -DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ-ISDIVP-------- 170

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
                            L  L++L  L LS N+ S      L+ L+ L  L+L + +   
Sbjct: 171 -----------------LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLN 211

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
           +     +NL   + +  ++  L  P   S    +    +          +    +    +
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAE 394
                R +         +  +   +D ++    +     +     
Sbjct: 272 GKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKP 316

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 2e-12
 Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 35/236 (14%)

Query: 578 TFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLI 637
           T ++ + +  +  N++ ++    +       +  L +  N++    P  L  L  L  L 
Sbjct: 38  TQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93

Query: 638 LRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM 697
           L  N+    I    +     KL+ L L +N  + +    +    +++  GNN        
Sbjct: 94  LDENK----IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK------- 142

Query: 698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH 757
                      I  +  +       L    T+ L  N+    I  +   L  L+ L  S 
Sbjct: 143 -----------ITDITVL-----SRLTKLDTLSLEDNQIS-DIVPL-AGLTKLQNLYLSK 184

Query: 758 NKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP 813
           N ++ L    L  L  L+ L+L S +   +     ++L     +  +   LV P  
Sbjct: 185 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 3e-11
 Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 41/226 (18%)

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
           +         ++   P      +     ++    +          L+ +  +I  ++   
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 645 --GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
               I Y       P +  L L+ N+ T + P    +N   +    N             
Sbjct: 57  SVQGIQY------LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK------------ 98

Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
                 I  +  +  +++K+     ++ L  N         +  L  L+ L   +NK+T 
Sbjct: 99  ------IKDLSSLK-DLKKL----KSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD 145

Query: 763 LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           +    L  LT+L++L L  N+++  +P  L  L  LQ L LS+N +
Sbjct: 146 ITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 1e-10
 Identities = 48/290 (16%), Positives = 89/290 (30%), Gaps = 46/290 (15%)

Query: 520 SNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF 579
            +  +    P      +     NL   S+          +S+  +    ++   S+ Q  
Sbjct: 7   VSTPIKQIFPDD--AFAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK-SV-QGI 61

Query: 580 SKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR 639
                +T L LN N+L    PL+  N   L  L +  N+I       L  L +L+ L L 
Sbjct: 62  QYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLE 117

Query: 640 SNRFHGPITYSVTRFP-FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY 698
            N     I+  +      P+L  L L NN+ T +           +   +N         
Sbjct: 118 HNG----IS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-------- 164

Query: 699 INYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEV--VGKLNSLKGLNFS 756
                     I  +  +       L     + LS N     I ++  +  L +L  L   
Sbjct: 165 ----------ISDIVPL-----AGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELF 205

Query: 757 HNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN 806
             +          NL    ++  +   +    P  ++     +  N+  +
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  104 bits (262), Expect = 2e-24
 Identities = 56/284 (19%), Positives = 93/284 (32%), Gaps = 46/284 (16%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLSVSSF 115
                S++   IPSD       +   L           I  G F+ F +L  + +S +  
Sbjct: 14  FLCQESKVT-EIPSDLP----RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDV 66

Query: 116 SGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
              I A++ S+L KL  + +                    N L  +           P  
Sbjct: 67  LEVIEADVFSNLPKLHEIRIE-----------------KANNLLYIN----------PEA 99

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKV--NWSSPLRF 231
             NL +L  L + N G++  +P+           L +  N N+ ++        S     
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPS-TLSNLQQLRHLDLSNNKFTGQ 290
           + L        I  S  N +QL  L+LS NN    +P+           LD+S  +    
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 291 IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS 334
                 NL +L      N +    +      L +L+   L+Y S
Sbjct: 218 PSYGLENLKKLRARSTYNLKKLPTLEK----LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 49/322 (15%), Positives = 98/322 (30%), Gaps = 59/322 (18%)

Query: 327 TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
                 + +   IPS L  +     +     +L      + S   +L  + +S N++   
Sbjct: 13  VFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 387 VELYMFAELKNLLGLDLSHNSLSLSTLLP-VNSSFPYLSMLSLSSCNISEFPDFLRTQ-H 444
           +E  +F+ L  L  + +   + +L  + P    + P L  L +S+  I   PD  +    
Sbjct: 70  IEADVFSNLPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLK 504
           +  +LD+ DN         I  + +++   L+                   L L  N ++
Sbjct: 129 QKVLLDIQDN-------INIHTIERNSFVGLS--------------FESVILWLNKNGIQ 167

Query: 505 GSIPF----LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS 560
             I                 NN L       F   S    +++S   ++  +P       
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP------- 218

Query: 561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN 620
                                  +L   +  + +    +P +L     L    +      
Sbjct: 219 ---------------SYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPSHC 259

Query: 621 GTFPAWLGALSELQVLILRSNR 642
             F  W   +SEL  +  +S  
Sbjct: 260 CAFANWRRQISELHPICNKSIL 281

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.0 bits (205), Expect = 4e-17
 Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 22/256 (8%)

Query: 278 RHLDLSNNKFTGQIPC-IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
           R      +K T +IP  +  N  +L    F   +L      + S    L  I +S N + 
Sbjct: 12  RVFLCQESKVT-EIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 337 GTIPSGLFTS-PLLESIDLRN-NQLTGSISNSI-SELVNLIDLSLSSNNLSGNVELYMFA 393
             I + +F++ P L  I +   N L   I+      L NL  L +S+  +  ++      
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSM----LSLSSCNISEFP-DFLRTQHRLQI 448
                + LD+  N +++ T+    +SF  LS     L L+   I E            ++
Sbjct: 126 HSLQKVLLDIQDN-INIHTIER--NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 449 LDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRS-NSLKGSI 507
               +N +   +PN +++ G      L++S   +  +     +NL+ L  RS  +LK   
Sbjct: 183 NLSDNNNLE-ELPNDVFH-GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP 240

Query: 508 PFLP-PSLNFISVSNN 522
                 +L   S++  
Sbjct: 241 TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.8 bits (189), Expect = 4e-15
 Identities = 39/278 (14%), Positives = 84/278 (30%), Gaps = 46/278 (16%)

Query: 401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGG 459
                + +   T +P +        L      +             L+ +++S N +   
Sbjct: 14  FLCQESKV---TEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 460 IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDL-RSNSLKGSIP---FLP-PSL 514
           I         D  ++L                 L  + + ++N+L   I    F   P+L
Sbjct: 70  IEA-------DVFSNL---------------PKLHEIRIEKANNLL-YINPEAFQNLPNL 106

Query: 515 NFISVSNNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGMIPP----CLANSSLWFLDMRMN 569
            ++ +SN  +   +P +   +      +++ +N     I       L+  S+  L +  N
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI-LWLNKN 164

Query: 570 NFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGA 629
                    F+      +   ++N LE          S   +LD+   RI+      L  
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 630 LSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNN 667
           L +L+     + +    +           L    L+  
Sbjct: 225 LKKLRARSTYNLKKLPTLE------KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 21/213 (9%)

Query: 471 TLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIP---FLP-PSLNFISVSN-N 522
               L      L  I+      + +L  +++  N +   I    F   P L+ I +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 523 KLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP--CLANSSLWFLDMRMNNFHGSIPQ-TF 579
            L    P +F N+ ++ Y+ +SN  +   +P    + +     LD++ N    +I + +F
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 580 SK-GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL 638
                   IL LN N ++     +       E+    NN +           S   +L +
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 639 RSNRFHGPITYSVTRFPF---PKLRILDLSNNE 668
              R H     S+  +      KLR     N +
Sbjct: 210 SRTRIH-----SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 56/381 (14%), Positives = 111/381 (29%), Gaps = 81/381 (21%)

Query: 492 NLRYLDLRSNSLKGSIP-FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           + R    + + +   IP  LP +   +     KL      +F     +  + +S N +  
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 551 MIPPCLAN--SSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCS 607
           +I   + +    L  + +   N    I  + F     L  L +++  ++    +  ++  
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 608 FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNN 667
              +LD+ +N               + +  +  N F G            +  IL L+ N
Sbjct: 129 QKVLLDIQDN---------------INIHTIERNSFVGLS---------FESVILWLNKN 164

Query: 668 EFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFT 727
                +    F                                              +  
Sbjct: 165 GIQ-EIHNSAFNG------------------------------------------TQLDE 181

Query: 728 TIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE 787
                 N  +    +V    +    L+ S  ++  L  Y LENL +L +    + K   +
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---K 238

Query: 788 IPWQLTSLNFLQVLNLSQN----QLVGPIPQGKQFHTFSSDSY-NGNMGLCGFPLSEKCS 842
           +P  L  L  L   +L+             Q  + H   + S     +        ++ S
Sbjct: 239 LPT-LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSS 297

Query: 843 NDEVTEPIQDREEDDTWSLFD 863
             E  E    R  D T++ FD
Sbjct: 298 LAEDNESSYSRGFDMTYTEFD 318

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  101 bits (254), Expect = 1e-23
 Identities = 56/306 (18%), Positives = 95/306 (31%), Gaps = 43/306 (14%)

Query: 168 SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNK---NLTSVFPKVN 224
           + +V  +    S    L   +         +I +  +L+ L +   +    +     +V 
Sbjct: 33  AADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL 92

Query: 225 WSSPLRFMDLYGCNFMGSIPASLGNLS--QLTYLDLSYNNFSGHIPSTLSNLQQ-----L 277
             S L+ + L      G+ P  L   +   L  L+L   +++    + L+ LQQ     L
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGL 151

Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVS----RLHSLVTIYLSYN 333
           + L ++                 LS LD S+N   G      +    +  +L  + L   
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 334 SLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFA 393
            +                        +G  S   +  V L  L LS N+L          
Sbjct: 212 GME---------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 394 ELKNLLGLDLSHNSL-SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLS 452
               L  L+LS   L  +   LP       LS+L LS   +   P        +  L L 
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPAK-----LSVLDLSYNRLDRNPSPDELPQ-VGNLSLK 304

Query: 453 DNQIRG 458
            N    
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 48/301 (15%), Positives = 89/301 (29%), Gaps = 23/301 (7%)

Query: 224 NWSSPL-RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDL 282
           N+S P   +   + C     +    G  S    L            + +     L+ L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 283 SNNKFTGQIPCIFA---NLTQLSFLDFSNNQLNGPISSSVSRLH--SLVTIYLSYNSLNG 337
              +   +I         ++ L  L   N ++ G     +       L  + L   S   
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 338 TIPS----GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELY--- 390
                     +  P L+ + +            +     L  L LS N   G   L    
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 391 MFAELKNLLGLDLSHNSL-SLSTLLP-VNSSFPYLSMLSLSSCNISEFPDFLRTQH--RL 446
              +   L  L L +  + + S +   + ++   L  L LS  ++ +           +L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 447 QILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI-ELLPWKNLRYLDLRSNSLKG 505
             L+LS   ++              L+ L+LS+N L           +  L L+ N    
Sbjct: 256 NSLNLSFTGLKQVPKGLPAK-----LSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

Query: 506 S 506
           S
Sbjct: 311 S 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.5 bits (227), Expect = 4e-20
 Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 20/271 (7%)

Query: 106 AHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSV 165
             L    +        +I     L  L +               ++  ++ LQEL L ++
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL-GISGLQELTLENL 105

Query: 166 DMSYEVPSFLTNLS--SLTSLDLGNCGLQGSIPE----NIFRLPNLQNLILSYNKNLTSV 219
           +++   P  L   +   L  L+L N               +  P L+ L ++   +L   
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 220 FPKVNWSSPLRFMDLYGCNFMGSIP----ASLGNLSQLTYLDLSYNNF---SGHIPSTLS 272
             +V     L  +DL     +G               L  L L        SG   +  +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 273 NLQQLRHLDLSNNKFTGQIPCI-FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLS 331
              QL+ LDLS+N              +QL+ L+ S   L        ++L  L    LS
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLS 282

Query: 332 YNSLNGTIPSGLFTSPLLESIDLRNNQLTGS 362
           YN L+   PS     P + ++ L+ N    S
Sbjct: 283 YNRLD-RNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 48/274 (17%), Positives = 83/274 (30%), Gaps = 36/274 (13%)

Query: 413 LLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDT- 471
           L     S  YL     +  ++ +F D +++   L+ L +   +I   I      V   + 
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKS-LSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 472 -----LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP-------PSLNFISV 519
                L +L ++      +      +L  L+LR+ S      +L        P L  +S+
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 520 SNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF 579
           +                ++  ++LS+N   G                         P  F
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL----------------ISALCPLKF 200

Query: 580 SKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGA-LSELQVLIL 638
                L + N       G           L+ LD+ +N +     A      S+L  L L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 639 RSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV 672
                       V +    KL +LDLS N     
Sbjct: 261 SFTGLK-----QVPKGLPAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 54/244 (22%), Positives = 83/244 (34%), Gaps = 36/244 (14%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQIL---NLAFNDFNYSYISPGFTRFPNLAHLN 109
            +  L L    + G+ P      + P L IL   N+++   +           P L  L+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 110 LSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDM-- 167
           ++ +        ++     L +LDLS N +LG    +          LQ L L +  M  
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 168 -SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLP-NLQNLILSYNKNLTSVFPKVNW 225
            S    +       L  LDL +  L+ +        P  L +L LS+   L  V      
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK---- 270

Query: 226 SSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285
                                 G  ++L+ LDLSYN      PS    L Q+ +L L  N
Sbjct: 271 ----------------------GLPAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGN 306

Query: 286 KFTG 289
            F  
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 67/324 (20%), Positives = 104/324 (32%), Gaps = 44/324 (13%)

Query: 506 SIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS-SLWFL 564
           S  F  P  ++ S  N   + ++ L     S  + +   +   +      +  S SL  L
Sbjct: 14  SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRL 73

Query: 565 DMRMNNFHGSIPQTFSK---GSRLTILNLNDNQLEGSVPLSLVNCSF--LEVLDVGNNRI 619
            +R       I     +    S L  L L + ++ G+ P  L+  +   L +L++ N   
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 620 NGTFPAWLGALSE-----LQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG--- 671
                AWL  L +     L+VL +            V  FP   L  LDLS+N   G   
Sbjct: 134 AT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP--ALSTLDLSDNPELGERG 190

Query: 672 ---VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTT 728
               L    F   Q +   N                    + T  GV   +         
Sbjct: 191 LISALCPLKFPTLQVLALRNAG------------------METPSGVCSALAAARVQLQG 232

Query: 729 IDLSGNKFQGRIPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE 787
           +DLS N  +           + L  LN S   L  +          L  LDLS N++   
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD-R 288

Query: 788 IPWQLTSLNFLQVLNLSQNQLVGP 811
            P     L  +  L+L  N  +  
Sbjct: 289 NP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.9 bits (176), Expect = 1e-13
 Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP---LSFCNMSSIFYVNLSNNSLN 549
           L+ +D  ++  + +      SL  ++V   ++   I    L    +S +  + L N  + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 550 GMIPP---CLANSSLWFLDMRMNNFHGSIPQTFS----KGSRLTILNLNDNQLEGSVPLS 602
           G  PP         L  L++R  ++                 L +L++            
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 603 LVNCSFLEVLDVGNNRINGTFPAW----LGALSELQVLILRSNRFHG-PITYSVTRFPFP 657
           +     L  LD+ +N   G               LQVL LR+          S       
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 658 KLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNM 717
           +L+ LDLS+N                +                                 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQL--------------------------------- 255

Query: 718 EMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL 777
                     +++LS    + ++P+  G    L  L+ S+N+L      S + L Q+ +L
Sbjct: 256 ---------NSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDRNP--SPDELPQVGNL 301

Query: 778 DLSSNK 783
            L  N 
Sbjct: 302 SLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 39/243 (16%), Positives = 60/243 (24%), Gaps = 49/243 (20%)

Query: 588 LNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGAL---SELQVLILRSNRFH 644
           L   D + +      ++    L+ L V   RI          +   S LQ L L +    
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 645 GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNE 704
           G     +     P L IL+L N  +           + A +                   
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWAT------RDAWLAELQQWLKPG------------ 150

Query: 705 YYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG-- 762
                                   + ++         E V    +L  L+ S N   G  
Sbjct: 151 ---------------------LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 763 -----LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQ 817
                L P     L  L   +      +G       +   LQ L+LS N L         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 818 FHT 820
              
Sbjct: 250 DWP 252

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 98.1 bits (245), Expect = 8e-23
 Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 32/228 (14%)

Query: 181 LTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFM 240
             S+D  +  L  +IP NI    + + L L  NK L+S+  K                F 
Sbjct: 18  KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNK-LSSLPSKA---------------FH 58

Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
                    L++L  L L+ N            L+ L  L +++NK       +F  L  
Sbjct: 59  R--------LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 301 LSFLDFSNNQLNGPISSSV-SRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQ 358
           L+ L    NQL   +   V   L  L  + L YN L  ++P G+F     L+ + L NNQ
Sbjct: 111 LAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQ 168

Query: 359 LTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
           L      +  +L  L  L L +N L   V    F  L+ L  L L  N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKN 215
            ++L L S  +S         L+ L  L L +  LQ ++P  IF  L NL+ L ++ NK 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK- 96

Query: 216 LTSVFPKVNWS-SPLRFMDLYGCNFMGSIPASL-GNLSQLTYLDLSYNNFSGHIPSTL-S 272
           L ++   V      L  + L   N + S+P  +  +L++LTYL L YN     +P  +  
Sbjct: 97  LQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332
            L  L+ L L NN+        F  LT+L  L   NNQL      +   L  L  + L  
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 333 N 333
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 22/207 (10%)

Query: 327 TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
           ++  S   L   IPS +      + +DL++N+L+   S +   L  L  L L+ N L   
Sbjct: 20  SVDCSSKKLT-AIPSNIPAD--TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-T 75

Query: 387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEFPD--FLRT 442
           +   +F ELKNL  L ++ N L     LP+        L+ L L    +   P   F   
Sbjct: 76  LPAGIFKELKNLETLWVTDNKL---QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW---KNLRYLDLR 499
             +L  L L  N+++  +P  +++    +L  L L +N L  +    +     L+ L L 
Sbjct: 133 -TKLTYLSLGYNELQ-SLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 500 SNSLKGSIP---FLP-PSLNFISVSNN 522
           +N LK  +P   F     L  + +  N
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 49/235 (20%), Positives = 81/235 (34%), Gaps = 71/235 (30%)

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI----NGTFPAWLGALSELQVLILRS 640
              L+L  N+L      +    + L +L + +N++     G F      L  L+ L +  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTD 94

Query: 641 NR--------FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA 692
           N+        F               L  L L  N+    LP R F +            
Sbjct: 95  NKLQALPIGVFDQL----------VNLAELRLDRNQLKS-LPPRVFDS------------ 131

Query: 693 EGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPE-VVGKLNSLK 751
                                         L   T + L  N+ Q  +P+ V  KL SLK
Sbjct: 132 ------------------------------LTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160

Query: 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN 806
            L   +N+L  +   + + LT+L++L L +N++         SL  L++L L +N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 36/212 (16%)

Query: 492 NLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           N   +D  S  L  +IP  +P     + + +NKLS     +F  ++ +  + L++N L  
Sbjct: 17  NKNSVDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ- 74

Query: 551 MIPP----CLANSSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPL---- 601
            +P      L N  L  L +  +N   ++P   F +   L  L L+ NQL+ S+P     
Sbjct: 75  TLPAGIFKELKN--LETLWVT-DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD 130

Query: 602 SLVNCSFLEVLDVGNNRI----NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF- 656
           SL     L  L +G N +     G F      L+ L+ L L +N+        V    F 
Sbjct: 131 SLTK---LTYLSLGYNELQSLPKGVF----DKLTSLKELRLYNNQLK-----RVPEGAFD 178

Query: 657 --PKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686
              +L+ L L NN+   V P   F + + +  
Sbjct: 179 KLTELKTLKLDNNQLKRV-PEGAFDSLEKLKM 209

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 724 NIFTTI---DLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLS 780
           NI       DL  NK      +   +L  L+ L  + NKL  L     + L  LE+L ++
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 781 SNK---VAGEIPWQLTSLNFLQVLNLSQNQL 808
            NK   +   +  QL +   L  L L +NQL
Sbjct: 94  DNKLQALPIGVFDQLVN---LAELRLDRNQL 121

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 16/90 (17%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
            T+ ++ NK Q     V  +L +L  L    N+L  L P   ++LT+L  L L  N    
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN---- 143

Query: 787 EIPWQLTSLN---F-----LQVLNLSQNQL 808
               +L SL    F     L+ L L  NQL
Sbjct: 144 ----ELQSLPKGVFDKLTSLKELRLYNNQL 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 23/82 (28%), Positives = 35/82 (42%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             + L  N+ +   P V   L  L  L+  +N+L  L     + LT L+ L L +N++  
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 787 EIPWQLTSLNFLQVLNLSQNQL 808
                   L  L+ L L  NQL
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQL 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 41/261 (15%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            IP +L        LDLS+N        +  +  +L+ LDLS  +        + +L+ L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LESIDLRNNQLT 360
           S L  + N +      + S L SL  +     +L  ++ +        L+ +++ +N + 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 361 GSISNSI-SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419
                   S L NL  L LSSN +  ++       L  +  L+LS               
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------- 181

Query: 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
                 L LS   ++        + RL+ L L  NQ++  +P+ I++    +L  + L  
Sbjct: 182 ------LDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFD-RLTSLQKIWLHT 233

Query: 480 NFLTGIELLPW----KNLRYL 496
           N        PW      + YL
Sbjct: 234 N--------PWDCSCPRIDYL 246

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 62/257 (24%), Positives = 88/257 (34%), Gaps = 57/257 (22%)

Query: 67  SIPSDSSLFSLP-HLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLSVSSFSGQIPAEI- 123
            IP +     LP   + L+L+FN     ++    F  FP L  L+LS       I     
Sbjct: 21  KIPDN-----LPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAY 72

Query: 124 SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTS 183
             LS L +L L+GN                   +Q L               + LSSL  
Sbjct: 73  QSLSHLSTLILTGN------------------PIQSLA----------LGAFSGLSSLQK 104

Query: 184 LDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTS-----VFPKVNWSSPLRFMDLYGC 237
           L      L  S+       L  L+ L +++N  + S      F  +   + L  +DL   
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNL---TNLEHLDLSSN 159

Query: 238 NFMGSIPA-SLGNLSQLTY----LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
               SI    L  L Q+      LDLS N  +  I        +L+ L L  N+      
Sbjct: 160 KI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 293 CIFANLTQLSFLDFSNN 309
            IF  LT L  +    N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 58/238 (24%), Positives = 90/238 (37%), Gaps = 41/238 (17%)

Query: 55  TGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLS-- 111
             LDLS + L   + S S  FS P LQ+L+L+        I  G +    +L+ L L+  
Sbjct: 31  KNLDLSFNPLR-HLGSYS-FFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGN 86

Query: 112 -VSSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDM-S 168
            + S    +     S LS L  L     +   L+   +     +L  L+EL +    + S
Sbjct: 87  PIQS----LALGAFSGLSSLQKLVAVETNLASLENFPI----GHLKTLKELNVAHNLIQS 138

Query: 169 YEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKVNWSS 227
           +++P + +NL++L  LDL +  +Q SI       L  +  L LS                
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS---------------- 181

Query: 228 PLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285
               +DL   N M  I        +L  L L  N            L  L+ + L  N
Sbjct: 182 ----LDLSL-NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 55/270 (20%), Positives = 92/270 (34%), Gaps = 49/270 (18%)

Query: 327 TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
           T      +    IP  L  S   +++DL  N L    S S      L  L LS   +   
Sbjct: 11  TYQCMELNFY-KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-T 66

Query: 387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEFPDFLRTQ- 443
           +E   +  L +L  L L+ N +     L +   S    L  L     N++   +F     
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503
             L+ L+++ N I+            +  ++L                NL +LDL SN +
Sbjct: 124 KTLKELNVAHNLIQSFKLP-------EYFSNLT---------------NLEHLDLSSNKI 161

Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
           +             S+    L     +   N+S    ++LS N +N + P       L  
Sbjct: 162 Q-------------SIYCTDLRVLHQMPLLNLS----LDLSLNPMNFIQPGAFKEIRLKE 204

Query: 564 LDMRMNNFHGSIPQTFSKGSRLTILNLNDN 593
           L +  N         F + + L  + L+ N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 50/249 (20%), Positives = 81/249 (32%), Gaps = 55/249 (22%)

Query: 559 SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQL---EGSVPLSLVNCSFLEVLDVG 615
            S   LD+  N        +F     L +L+L+  ++   E     SL +   L  L + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH---LSTLILT 84

Query: 616 NNRI----NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---PKLRILDLSNNE 668
            N I     G F      LS LQ L+            S+  FP      L+ L++++N 
Sbjct: 85  GNPIQSLALGAF----SGLSSLQKLVAVETNLA-----SLENFPIGHLKTLKELNVAHNL 135

Query: 669 FTGVLPTRYFQNFQAM----MHGNNNSAEGGNMYINYGNEYYSAILTV--KGVNMEMEKV 722
                   YF N   +    +  N                     +          + ++
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNK--------------------IQSIYCTDLRVLHQM 175

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
             +  ++DLS N     I     K   LK L    N+L  +     + LT L+ + L +N
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

Query: 783 KVAGEIPWQ 791
                 PW 
Sbjct: 235 ------PWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 52/252 (20%), Positives = 77/252 (30%), Gaps = 77/252 (30%)

Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI----NGTFPAWLGA 629
            IP           L+L+ N L      S  +   L+VLD+    I    +G +     +
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QS 74

Query: 630 LSELQVLILRSNR--------FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681
           LS L  LIL  N         F G             L+ L          L      + 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGL----------SSLQKLVAVETNLAS-LENFPIGH- 122

Query: 682 QAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG-RI 740
                                                    L     ++++ N  Q  ++
Sbjct: 123 -----------------------------------------LKTLKELNVAHNLIQSFKL 141

Query: 741 PEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLE----SLDLSSNKVAGEIPWQLTSLN 796
           PE    L +L+ L+ S NK+  +    L  L Q+     SLDLS N +    P     + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 797 FLQVLNLSQNQL 808
            L+ L L  NQL
Sbjct: 202 -LKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 29/216 (13%)

Query: 471 TLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIP---FLP-PSLNFISVSNNK 523
           +  +L+LS N L  +       +  L+ LDL    ++ +I    +     L+ + ++ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 524 LSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN--SSLWFLDMRMNNFHGSIPQ--TF 579
           +      +F  +SS+  +     +L   +         +L  L++  N    S      F
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145

Query: 580 SKGSRLTILNLNDNQLEGSVPL----SLVNCSFLEV-LDVGNNRINGTFPAWLGALSELQ 634
           S  + L  L+L+ N+++ S+       L     L + LD+  N +N            L+
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 635 VLILRSNRFHGPITYSVTRFPF---PKLRILDLSNN 667
            L L +N+       SV    F     L+ + L  N
Sbjct: 204 ELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTN 234

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  101 bits (252), Expect = 3e-22
 Identities = 70/442 (15%), Positives = 137/442 (30%), Gaps = 53/442 (11%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
            V  ++L                      ++   +  + Y +I    + +  L  + L  
Sbjct: 67  KVRSVELKGKP------------HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR 114

Query: 113 SSFSGQIPAEIS-HLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYE- 170
              +      I+        L LS        T  L A+      L+EL L   D+    
Sbjct: 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVS 172

Query: 171 ---VPSFLTNLSSLTSLDLGNCGLQ---GSIPENIFRLPNLQNLILSYNKNLTSVFPKVN 224
              +  F    +SL SL++     +    ++   + R PNL++L L+    L  +   + 
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232

Query: 225 WSSPLRFMDLYGCN------FMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLR 278
            +  L  +   G            +  +L    +L  L   ++    ++P+  S   +L 
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292

Query: 279 HLDLSNNKFTGQ-IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNG 337
            L+LS        +  +     +L  L   +   +  +    S    L  + +  +    
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352

Query: 338 TIPSGLFT----------SPLLESIDLRNNQLTG-SISNSISELVNLIDLSLSSNNLSGN 386
             P+   T           P LES+     Q+T  ++        N+    L        
Sbjct: 353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412

Query: 387 VEL----------YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE- 435
             L           +    K+L  L LS   L+      + +    + MLS++    S+ 
Sbjct: 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471

Query: 436 -FPDFLRTQHRLQILDLSDNQI 456
                L     L+ L++ D   
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 95.0 bits (236), Expect = 3e-20
 Identities = 66/446 (14%), Positives = 146/446 (32%), Gaps = 35/446 (7%)

Query: 57  LDLS-CSRLHGSIPSDSSLF-SLPHLQILNLA--FNDFNYSYISPGFTRFPNLAHLNLSV 112
           LDL        S    S    +   L  LN++   ++ ++S +    TR PNL  L L+ 
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 113 SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPV--LKALVQNLNELQELVLNSVDMSYE 170
           +    ++   +    +L  L   G +          L   +    EL+ L      +   
Sbjct: 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 171 VPSFLTNLSSLTSLDLGNCGLQG-SIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
           +P+  +  S LT+L+L    +Q   + + + + P LQ L +        +    +    L
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340

Query: 230 RFMDLYGCNFMG----------SIPASLGNLSQLTYLDLSYNNFSGHIPSTLS-NLQQLR 278
           R + ++                 + +      +L  +       +     T++ N   + 
Sbjct: 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400

Query: 279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
              L               +   +    +   L+    + V     L  + LS    +  
Sbjct: 401 RFRLCI-------------IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKV 447

Query: 339 IPSGLFTSPLLESIDLRNNQLTG-SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN 397
                  +  +E + +     +   + + +S   +L  L +          L   ++L+ 
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507

Query: 398 LLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIR 457
           +  L +S  S+S      +    P L++  +      +         R+ I   +    R
Sbjct: 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIY-RTVAGPR 566

Query: 458 GGIPNWIWNVGKDTLNHLNLSHNFLT 483
             +P ++WN+ +D+   +  S   +T
Sbjct: 567 FDMPGFVWNMDQDS--TMRFSRQIIT 590

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 91.9 bits (228), Expect = 2e-19
 Identities = 68/462 (14%), Positives = 145/462 (31%), Gaps = 62/462 (13%)

Query: 99  FTRFPNLAHLNLSV---------------SSFSGQIPAEISHLSKLVSLDLSGNSQLGLD 143
             RFP +  + L                       I A  S  + L  + L       + 
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV---VT 118

Query: 144 TPVLKALVQNLNELQELVLNSVDM--SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR 201
              L+ + ++    + LVL+S +   +  + +      +L  LDL    +       +  
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 202 L----PNLQNLILS-YNKNLT-SVFPKVNWSSP-LRFMDLYGCNFMGSIPASLGNLSQLT 254
                 +L +L +S     ++ S   ++    P L+ + L     +  +   L    QL 
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 255 YLDLSY------NNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
            L           +    +   LS  ++LR L    +     +P +++  ++L+ L+ S 
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298

Query: 309 NQLNGP-ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN-NQLTGSISNS 366
             +    +   + +   L  +++     +  +     T   L  + +          + +
Sbjct: 299 ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358

Query: 367 ISELVNLIDLSLSSNNLS---------GNVELYMFAE-LKNLLGLDLSHNSLSLSTLLPV 416
           ++E   L+ +S+    L           N  L   A    N+    L          L +
Sbjct: 359 LTE-QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417

Query: 417 N----------SSFPYLSMLSLSSC-NISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIW 465
                           L  LSLS       F        ++++L ++         + + 
Sbjct: 418 EPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL 477

Query: 466 NVGKDTLNHLNLSHNFLTGIELL----PWKNLRYLDLRSNSL 503
           + G D+L  L +         LL      + +R L + S S+
Sbjct: 478 S-GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 82/523 (15%), Positives = 163/523 (31%), Gaps = 83/523 (15%)

Query: 178 LSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGC 237
                 + +GNC    S    I R P ++++ L    +        +++        Y  
Sbjct: 42  RWCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFA------DFNLVPDGWGGYVY 94

Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS-NLQQLRHLDLSN-NKFTGQ-IPCI 294
            ++ ++ +S      L  + L     +      ++ + +  + L LS+   F+   +  I
Sbjct: 95  PWIEAMSSSYTW---LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151

Query: 295 FANLTQLSFLDFSNNQLNGPISSSVSRL----HSLVTIYLSYNSLNGTIPSGLFT----S 346
            A    L  LD   + ++      +S       SLV++ +S  +   +  S L       
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS-FSALERLVTRC 210

Query: 347 PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELY--MFAELKNLLGL-DL 403
           P L+S+ L        ++  +     L +L           ++Y  +   L     L  L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 404 SH-NSLSLSTLLPVNSSFPYLSMLSLSSCNIS--EFPDFLRTQHRLQILDLSDNQIRGGI 460
           S       + L  V S    L+ L+LS   +   +    L    +LQ L + D       
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD------- 323

Query: 461 PNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDL---RSNSLKGSIPFLPPSLNFI 517
                 +    L  L  +            K+LR L +       ++ ++      L  +
Sbjct: 324 -----YIEDAGLEVLAST-----------CKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

Query: 518 SVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQ 577
           S+   KL  E  L FC         ++N +L  +        ++    + +         
Sbjct: 368 SMGCPKL--ESVLYFCR-------QMTNAALITIARNR---PNMTRFRLCIIEPKAPDYL 415

Query: 578 TF-----------SKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI-NGTFPA 625
           T                 L  L+L+    +            +E+L V      +     
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475

Query: 626 WLGALSELQVLILRSNRFHGPITYSVTRF--PFPKLRILDLSN 666
            L     L+ L +R   F      ++         +R L +S+
Sbjct: 476 VLSGCDSLRKLEIRDCPF---GDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.5 bits (157), Expect = 9e-11
 Identities = 78/513 (15%), Positives = 156/513 (30%), Gaps = 58/513 (11%)

Query: 321 RLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLS 379
            +       +   +     P+ +    P + S++L+        +         +   + 
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 380 SNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC-NISE--F 436
           +          M +    L  + L    ++   L  +  SF    +L LSSC   S    
Sbjct: 99  A----------MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148

Query: 437 PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD--TLNHLNLS--HNFLT--GIELLP- 489
                T   L+ LDL ++ +     +W+ +      +L  LN+S   + ++   +E L  
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208

Query: 490 -WKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548
              NL+ L L        +  L      +         E+                 +  
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLE--------ELGTGGYTAEV------RPDVY 254

Query: 549 NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQL--EGSVPLSLVNC 606
           +G+         L  L    +     +P  +S  SRLT LNL+   +     V L L  C
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL-LCQC 313

Query: 607 SFLEVLDVGNNRINGTFPAWLGALSELQVLIL-RSNRFHGPITYSVTR-------FPFPK 658
             L+ L V +   +           +L+ L +  S  F      ++T           PK
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373

Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYIN-YGNEYYSAILTVKGVNM 717
           L  +     + T             +     N        I     +Y +      G   
Sbjct: 374 LESVLYFCRQMTNA-------ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426

Query: 718 EMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSLENLTQLES 776
            +E   ++   + LSG         +      ++ L+ +    + L + + L     L  
Sbjct: 427 IVEHCKDL-RRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 777 LDLSSNKVAGE-IPWQLTSLNFLQVLNLSQNQL 808
           L++       + +    + L  ++ L +S   +
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 18/262 (6%)

Query: 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSY 212
            L    ++       +        +L  +T+L     G+  +I E +  L NL  L L  
Sbjct: 17  ALANAIKIAAG--KSNVTDTVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
           N+ +T + P  N +  +  ++L G        +++  L  +  LDL+    +    + L+
Sbjct: 73  NQ-ITDLAPLKNLTK-ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD--VTPLA 126

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332
            L  L+ L L  N+ T   P   A LT L +L   N Q++    + ++ L  L T+    
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADD 182

Query: 333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF 392
           N +  +  S L + P L  + L+NNQ++  +S  ++   NL  ++L++  ++     Y  
Sbjct: 183 NKI--SDISPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 393 AELKNLLGLDLSHNSLSLSTLL 414
             +   +    S   ++ +T+ 
Sbjct: 239 NLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 58/302 (19%), Positives = 114/302 (37%), Gaps = 33/302 (10%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
             N   +    S+ +  +    + L  + +L   G              V  +  +Q L 
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT------------GVTTIEGVQYLN 63

Query: 162 -LNSVDMSY---EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLT 217
            L  +++        + L NL+ +T L+L    L       I  L +++ L L+  +   
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQ--I 119

Query: 218 SVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL 277
           +    +   S L+ + L   N + +I   L  L+ L YL +     S   P  L+NL +L
Sbjct: 120 TDVTPLAGLSNLQVLYLDL-NQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175

Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNG 337
             L   +NK +  I  + A+L  L  +   NNQ++    S ++   +L  + L+  ++  
Sbjct: 176 TTLKADDNKIS-DISPL-ASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTI-- 229

Query: 338 TIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL-YMFAELK 396
           T     + + L+    ++          +IS+       +L+ N  S    + Y F +  
Sbjct: 230 TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSV 289

Query: 397 NL 398
             
Sbjct: 290 TF 291

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 48/257 (18%), Positives = 98/257 (38%), Gaps = 22/257 (8%)

Query: 367 ISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSML 426
              L N I ++   +N++  V     A+L  +  L      +   T +        L  L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGV---TTIEGVQYLNNLIGL 68

Query: 427 SLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK-DTLNHLNLSHNFLTGI 485
            L    I++          +  L+LS N ++      +  +    ++  L+L+   +T +
Sbjct: 69  ELKDNQITDLAPLKNLTK-ITELELSGNPLKN-----VSAIAGLQSIKTLDLTSTQITDV 122

Query: 486 ELLPW-KNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
             L    NL+ L L  N +  +I  L    +L ++S+ N ++S   PL+  N+S +  + 
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLK 179

Query: 543 LSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLS 602
             +N ++  I P  +  +L  + ++ N      P   +  S L I+ L +  +       
Sbjct: 180 ADDNKIS-DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 603 LVNCSFLEVLDVGNNRI 619
             N     V+   +   
Sbjct: 237 NNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 53/269 (19%), Positives = 95/269 (35%), Gaps = 31/269 (11%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS- 111
           +   +         ++    +   L  +  L+             G     NL  L L  
Sbjct: 20  NAIKIAAG----KSNVTDTVTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKD 72

Query: 112 --VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY 169
             ++  +      + +L+K+  L+LSGN    +        +  L  ++ L L S  ++ 
Sbjct: 73  NQITDLAP-----LKNLTKITELELSGNPLKNVSA------IAGLQSIKTLDLTSTQIT- 120

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
              + L  LS+L  L L    +  +    +  L NLQ L +   + ++ + P  N S  L
Sbjct: 121 -DVTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSK-L 175

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
             +     N +  I   L +L  L  + L  N  S   P  L+N   L  + L+N   T 
Sbjct: 176 TTLKADD-NKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSS 318
           Q      NL   + +   +     P + S
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 48/294 (16%), Positives = 101/294 (34%), Gaps = 42/294 (14%)

Query: 520 SNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQT 578
               ++   P     +++   +    +++   +    A+   +  L         +I   
Sbjct: 5   QPTAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-G 58

Query: 579 FSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL 638
               + L  L L DNQ+    PL   N + +  L++  N +       +  L  ++ L L
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDL 114

Query: 639 RSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY 698
            S +    IT          L++L L  N+ T + P     N Q +  GN          
Sbjct: 115 TSTQ----ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-------- 162

Query: 699 INYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHN 758
                     +  +  +       L+  TT+    NK     P  +  L +L  ++  +N
Sbjct: 163 ----------VSDLTPL-----ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205

Query: 759 KLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPI 812
           +++ + P  L N + L  + L++  +  +  +   +L    V+       + P 
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 61/294 (20%)

Query: 491 KNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549
            N   +    +++  ++       +  +S     ++    +    ++++  + L +N + 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 550 GMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFL 609
             + P    + +  L++  N          +    +  L+L   Q+    PL+    S L
Sbjct: 77  -DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA--GLSNL 131

Query: 610 EVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEF 669
           +VL +  N+I    P  L  L+ LQ L + + +    ++         KL  L   +N+ 
Sbjct: 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ----VSDLTPLANLSKLTTLKADDNKI 185

Query: 670 TGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTI 729
           + + P     N                                                +
Sbjct: 186 SDISPLASLPNLI---------------------------------------------EV 200

Query: 730 DLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK 783
            L  N+        +   ++L  +  ++  +T    +   NL     +   S  
Sbjct: 201 HLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  100 bits (249), Expect = 6e-22
 Identities = 77/493 (15%), Positives = 152/493 (30%), Gaps = 64/493 (12%)

Query: 53  HVTGLDLSCSR---LHGSIPSDSSLF----------SLPHLQILNLAF---NDFNYSYIS 96
           ++  L L       +   IP +   +          +L  L+ ++      +D +   ++
Sbjct: 74  NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133

Query: 97  PGFTRFPNLAHLNLS-VSSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNL 154
                  +L  L L   S F+      I +H  K+ +L +  +S    D   L  L Q+ 
Sbjct: 134 KAR--ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 155 NELQELVLNSVDMSY----EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLIL 210
             L+ L     + +     ++ +   N  SL S+ +G+  +   +        NL+    
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCG 250

Query: 211 SYNKNLTSVFPKVNWSSPLRFMDLYGCNFMG--SIPASLGNLSQLTYLDLSYNNFSGH-I 267
                   +  K       R +   G ++MG   +P      +Q+  LDL Y        
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 268 PSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVT 327
            + +     L  L+  N      +  +     QL  L          +      +     
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370

Query: 328 IYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT----GSISNSISELVNLIDLSLSSNNL 383
           I L+                 LE + +  + +T     SI   +  L +   + L     
Sbjct: 371 IALAQG------------CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418

Query: 384 SGNVEL-----YMFAELKNLLGLDLSHNSLSLS--TLLPVNSSFPYLSMLSLSSCNISE- 435
             ++ L      +    K L           L+   L  +    P +  + L     S+ 
Sbjct: 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478

Query: 436 -FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD--TLNHLNLSHNFLT--GIELL-- 488
              +F R    LQ L++            I        +L +L +     +  G +L+  
Sbjct: 479 GLMEFSRGCPNLQKLEMRGCCF---SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535

Query: 489 --PWKNLRYLDLR 499
             P+ N+  +  R
Sbjct: 536 ARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 93.1 bits (231), Expect = 1e-19
 Identities = 60/439 (13%), Positives = 124/439 (28%), Gaps = 48/439 (10%)

Query: 57  LDLSCSRLHGSIPSDSSLFSL-----PHLQILNLAF-NDFNYSYISPGFTRFPNLAHLNL 110
           +      +     SD  L  L       L+ L L   + F    +    T    +  L +
Sbjct: 117 VHFRRMIV-----SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171

Query: 111 SVSSFSGQIPAEISHLSK----LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVD 166
             SSFS +    +  L++    L  L+        +    L+ + +N   L  + +   +
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 167 MSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLT--SVFPKVN 224
           +  E+  F    ++L     G+      +PE    L   + L       +    +     
Sbjct: 232 IL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290

Query: 225 WSSPLRFMDLYGCNFMG-SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLS 283
           +++ +R +DL             +     L  L+         +       +QL+ L + 
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350

Query: 284 NNKFTGQIPC------------IFANLTQLSFLDFSNNQLN----GPISSSVSRLHSLVT 327
                  +              +     +L ++    + +       I + +  L     
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410

Query: 328 IYLSYNS------LNGTIPSGLFTSPLLESIDLRNN--QLT-GSISNSISELVNLIDLSL 378
           + L          L+  + S L     L           LT   +S       N+  + L
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 379 SSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPD 438
                S    +       NL  L++     S   +    +  P L  L +     S    
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530

Query: 439 FL----RTQHRLQILDLSD 453
            L    R    ++++    
Sbjct: 531 DLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 63/435 (14%), Positives = 126/435 (28%), Gaps = 50/435 (11%)

Query: 57  LDLS-CSRLHGSIPSDSSLFSL----PHLQILNLAFNDFNY---SYISPGFTRFPNLAHL 108
           L L  CS       +   L S+      ++ L +  + F+     ++        +L  L
Sbjct: 143 LKLDKCSGF-----TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 109 NLSVSSFSGQIPAEISHLSK----LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNS 164
           N  ++ F+   P ++  +++    LVS+ +     L L          NL E     LN 
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG--FFKAAANLEEFCGGSLNE 255

Query: 165 VDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVN 224
                E    L     L  L L   G    +P        ++ L L Y    T     + 
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLI 314

Query: 225 WSSP-LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS----------- 272
              P L  ++         +        QL  L +        +                
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 273 -NLQQLRHLDLSNNKFTGQ-IPCIFANLTQLSFLD---------FSNNQLNGPISSSVSR 321
              Q+L ++ +  +  T + +  I   L  L              ++  L+  + S +  
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434

Query: 322 LHSLVTIYLSYNSLNGTIPSGLFTS---PLLESIDLRNNQLT-GSISNSISELVNLIDLS 377
              L            T     +     P +  + L     +   +        NL  L 
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494

Query: 378 LSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLS--TLLPVNSSFPYLSMLSLSSC-NIS 434
           +     S         +L +L  L +     S++   L+ +   +  + ++       ++
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

Query: 435 EFPDFLRTQHRLQIL 449
           +  +    +H   IL
Sbjct: 555 QQGEIREMEHPAHIL 569

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.7 bits (186), Expect = 3e-14
 Identities = 58/475 (12%), Positives = 138/475 (29%), Gaps = 65/475 (13%)

Query: 99  FTRFPNLAHLNLSVSS---------------FSGQIPAEISHLSKLVSLDLSGNSQLGLD 143
             RFPNL  L L                    +  +    ++L +L S+          D
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV--SD 126

Query: 144 TPVLKALVQNLNELQELVLNSVDM--SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR 201
             + +      ++L+ L L+      +  + S +T+   + +L +          + +  
Sbjct: 127 LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186

Query: 202 L----PNLQNLILSYNK----NLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL 253
           L     +L+ L     +    +   +         L  + +     +  +       + L
Sbjct: 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANL 245

Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ--IPCIFANLTQLSFLDFSNNQL 311
                   N    +P    NL   R L      + G   +P +F    Q+  LD     L
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305

Query: 312 NGPIS-SSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISEL 370
                 + + +  +L  +       +  +         L+ + +        + +    +
Sbjct: 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365

Query: 371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS 430
                ++L+                + L  + +  + ++  +L  + +    L    L  
Sbjct: 366 SQRGLIALAQG-------------CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

Query: 431 CNISE----------FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK--DTLNHLNLS 478
            +  E              L    +L+       Q        +  +G+    +  + L 
Sbjct: 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-LSYIGQYSPNVRWMLLG 471

Query: 479 HNFLT--GIELL--PWKNLRYLDLRSNSL--KGSIPFLP--PSLNFISVSNNKLS 525
           +   +  G+        NL+ L++R      +     +   PSL ++ V   + S
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 65/521 (12%), Positives = 137/521 (26%), Gaps = 98/521 (18%)

Query: 179 SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSV-FPKVNWS----------- 226
            +   + +  C    +      R PNL++L L              NW            
Sbjct: 50  ETREHVTMALCYTA-TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS 108

Query: 227 ---SPLRFMDLYGCNF--MGSIPASLGNLSQLTYLDLSY-NNFSGH-IPSTLSNLQQLRH 279
                L+ +         +     +      L  L L   + F+   + S +++ ++++ 
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 280 LDLSNNKFT----GQIPCIFANLTQLSFLDFSNNQLNG----PISSSVSRLHSLVTIYLS 331
           L +  + F+      +  +  + T L  L+F   +        + +      SLV++ + 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 332 YNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL-Y 390
                  +      +  LE     +      +      LV    L     +  G  E+  
Sbjct: 229 DFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 391 MFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC-NISEFPDFLRTQHRLQIL 449
           +F     +  LDL +  L       +    P L +L   +           +   +L+ L
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 450 DLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF 509
            +       G+ +    V +  L  L               + L Y+ +           
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQG-----------CQELEYMAV----------- 385

Query: 510 LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMN 569
                    ++N  L   I     N+     V L                     D+ ++
Sbjct: 386 -----YVSDITNESLE-SIGTYLKNLCDFRLVLLDREER--------------ITDLPLD 425

Query: 570 NFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGA 629
           N   S+     K  R           +  +         +  + +G    +      L  
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD---EGLME 482

Query: 630 LSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
            S                         P L+ L++    F+
Sbjct: 483 FSR----------------------GCPNLQKLEMRGCCFS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 55/516 (10%), Positives = 143/516 (27%), Gaps = 66/516 (12%)

Query: 320 SRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLS 379
           S     VT+ L Y +    +       P L S+ L+        +         +   ++
Sbjct: 49  SETREHVTMALCYTATPDRLSRRF---PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105

Query: 380 SNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV-NSSFPYLSMLSLSSC-NISE-- 435
                      +   L+ L  +      +S   L  +  +    L  L L  C   +   
Sbjct: 106 E----------ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG 155

Query: 436 FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKD--TLNHLNLSHNFLT-----GIELL 488
               +    +++ L + ++        W+  + +   +L  LN             +E +
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215

Query: 489 PW--KNLRYLDLRSN---SLKGSIPFLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFYV 541
               ++L  + +       L G              S++ +    E  ++      +  +
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 542 NLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG-SIPQTFSKGSRLTILNLNDNQLEGSVP 600
            LS    N M       + +  LD+               K   L +L   +   +  + 
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335

Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLR 660
           +    C  L+ L +             G +S+  ++ L                   +L 
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG--------------CQELE 381

Query: 661 ILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME 720
            + +  ++ T        ++ +++     N  +                +T   ++  + 
Sbjct: 382 YMAVYVSDITN-------ESLESIGTYLKNLCD-----FRLVLLDREERITDLPLDNGVR 429

Query: 721 KVLNIF---TTIDLSGNKFQ---GRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSLENLTQ 773
            +L              +       +  +     +++ +   +   +   +         
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489

Query: 774 LESLDLSSNKVAGE-IPWQLTSLNFLQVLNLSQNQL 808
           L+ L++     +   I   +T L  L+ L +   + 
Sbjct: 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 14/187 (7%)

Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
                    L  ++ +     T + +  L ++ L+N   T            +  L  +N
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSIS 368
                   + +S L +L  + +    +       L     L  +D+ ++    SI   I+
Sbjct: 76  IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 369 ELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLS 427
            L  +  + LS N    ++       L  L  L++  + +     +      FP L+ L 
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGI----EDFPKLNQLY 187

Query: 428 LSSCNIS 434
             S  I 
Sbjct: 188 AFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 31/206 (15%)

Query: 156 ELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN 215
             +  +   +  S         ++SLT + L N  +   +   I    N+++L ++    
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIH- 77

Query: 216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ 275
            T+  P                         +  LS L  L +   + +      LS L 
Sbjct: 78  ATNYNP-------------------------ISGLSNLERLRIMGKDVTSDKIPNLSGLT 112

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335
            L  LD+S++     I      L +++ +D S N     I   +  L  L ++ + ++ +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

Query: 336 NGTIPSGLFTSPLLESIDLRNNQLTG 361
                 G+   P L  +   +  + G
Sbjct: 172 --HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.4 bits (212), Expect = 4e-19
 Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 39/213 (18%)

Query: 103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKAL--VQNLNELQEL 160
                    +   S       + ++ L  + L+  +        +  L  ++  + +++L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN--------VTDLTGIEYAHNIKDL 71

Query: 161 VLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVF 220
            +N++  +    + ++ LS+L  L +    +      N+  L +L  L +S++ +     
Sbjct: 72  TINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD---- 125

Query: 221 PKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHL 280
                                SI   +  L ++  +DLSYN     I   L  L +L+ L
Sbjct: 126 --------------------DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSL 164

Query: 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
           ++  +           +  +L+ L   +  + G
Sbjct: 165 NIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 32/217 (14%), Positives = 75/217 (34%), Gaps = 37/217 (17%)

Query: 270 TLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
             S  +   +  L  +          A +  L+++  +N  +     + +   H++  + 
Sbjct: 18  PDSTFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLT 72

Query: 330 LSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL 389
           ++      T  + +     LE + +    +T     ++S L +L  L +S +    +  L
Sbjct: 73  INNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSIL 129

Query: 390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQIL 449
                L  +  +DLS+N   ++ ++P                        L+T   L+ L
Sbjct: 130 TKINTLPKVNSIDLSYNGA-ITDIMP------------------------LKTLPELKSL 164

Query: 450 DLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE 486
           ++  + +       I +  K  LN L      + G +
Sbjct: 165 NIQFDGVHDYRG--IEDFPK--LNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 10/157 (6%)

Query: 470 DTLNHLNLSHNF---LTGIELLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNNKLS 525
           ++L ++ L++     LTGIE     N++ L + +       P     +L  + +    ++
Sbjct: 44  NSLTYITLANINVTDLTGIEYA--HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSR 584
            +   +   ++S+  +++S+++ +  I   +     +  +D+  N     I         
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPE 160

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRING 621
           L  LN+  + +     +   +   L  L   +  I G
Sbjct: 161 LKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 24/201 (11%), Positives = 68/201 (33%), Gaps = 16/201 (7%)

Query: 356 NNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS-LSTLL 414
              L  S  N                  S    +   A++ +L  + L++ +++ L+ + 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANIT-EAQMNSLTYITLANINVTDLTGI- 62

Query: 415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNH 474
                   +  L++++ + + + + +     L+ L +    +       +  +    L  
Sbjct: 63  ---EYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS--LTL 116

Query: 475 LNLSHNFLTGIELLPW---KNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGEIP 529
           L++SH+      L        +  +DL  N     I  L   P L  +++  + +     
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176

Query: 530 LSFCNMSSIFYVNLSNNSLNG 550
           +   +   +  +   + ++ G
Sbjct: 177 IE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 27/204 (13%), Positives = 70/204 (34%), Gaps = 35/204 (17%)

Query: 472 LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGEIP 529
             +  L  +    I      +L Y+ L + ++   +  +    ++  ++++N   +   P
Sbjct: 25  YLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYNP 83

Query: 530 LSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
           +S   +S++  + +    +     P L+  +SL  LD+  +    SI    +   ++  +
Sbjct: 84  IS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT 648
           +L+ N     +   L     L+ L++  + ++         + +                
Sbjct: 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-----YRGIEDF--------------- 180

Query: 649 YSVTRFPFPKLRILDLSNNEFTGV 672
                   PKL  L   +    G 
Sbjct: 181 --------PKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             + ++           +  L++L+ L      +T     +L  LT L  LD+S +    
Sbjct: 69  KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 787 EIPWQLTSLNFLQVLNLSQNQLV 809
            I  ++ +L  +  ++LS N  +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 32/143 (22%)

Query: 72  SSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS 131
           + +  L +L+ L +   D     I    +   +L  L++S S+    I  +I+ L K+ S
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 132 LDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGL 191
           +DLS N  +                                  L  L  L SL++   G+
Sbjct: 141 IDLSYNGAI-----------------------------TDIMPLKTLPELKSLNIQFDGV 171

Query: 192 QGSIPENIFRLPNLQNLILSYNK 214
                  I   P L  L      
Sbjct: 172 HDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 31/210 (14%), Positives = 62/210 (29%), Gaps = 52/210 (24%)

Query: 578 TFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLI 637
           T ++ + LT + L +  +     +       ++ L + N       P  +  LS L+ L 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNYNP--ISGLSNLERLR 94

Query: 638 LRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM 697
           +           +++      L +LD+S++     + T        +             
Sbjct: 95  IMGKDVTSDKIPNLS--GLTSLTLLDISHSAHDDSILT-KINTLPKV------------- 138

Query: 698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH 757
                                         +IDLS N         +  L  LK LN   
Sbjct: 139 -----------------------------NSIDLSYNG-AITDIMPLKTLPELKSLNIQF 168

Query: 758 NKLTGLIPYSLENLTQLESLDLSSNKVAGE 787
           + +       +E+  +L  L   S  + G+
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T +D+S +     I   +  L  +  ++ S+N     I   L+ L +L+SL++  + V  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173

Query: 787 EIPWQLTSLNFLQVLNLSQNQL 808
                +     L  L      +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 10/166 (6%)

Query: 512 PSLNFISVSNNKLSGE--IPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRM 568
           P   F +  N  L       ++   M+S+ Y+ L+N ++  +    +    ++  L +  
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 569 NNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLG 628
            +     P   S  S L  L +    +      +L   + L +LD+ ++  + +    + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 629 ALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLP 674
            L ++  + L  N     IT  +     P+L+ L++  +       
Sbjct: 134 TLPKVNSIDLSYNGA---ITDIMPLKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 745 GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLS 804
            ++NSL  +  ++  +T L    +E    ++ L +++       P  ++ L+ L+ L + 
Sbjct: 41  AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 805 QNQL 808
              +
Sbjct: 97  GKDV 100

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 13/232 (5%)

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335
           Q     ++      +IP +  +   L         L    S + S L ++  IY+S +  
Sbjct: 12  QEEDFRVTCKDIQ-RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 336 NGTIPSGLFTS-PLLESIDLRNNQLTGSISNSI-SELVNLIDLSLSSNNLSGNVELYMFA 393
              + S  F +   +  I++RN +    I      EL  L  L + +  L    +L    
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127

Query: 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLS----MLSLSSCNISEFPDFLRTQHRLQIL 449
                  L+++ N     T +PVN+ F  L      L L +   +    +     +L  +
Sbjct: 128 STDIFFILEITDNPYM--TSIPVNA-FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184

Query: 450 DLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSN 501
            L+ N+    I    +       + L++S   +T +     ++L+ L  R+ 
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 82.7 bits (205), Expect = 8e-18
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 41/219 (18%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC-IFANLTQ 300
           S+P S         L L   +         SNL  +  + +S +    Q+    F NL++
Sbjct: 28  SLPPST------QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 301 LSFLDFSNNQL----------------------NG----PISSSVSRLHSLVTIYLSYNS 334
           ++ ++  N +                        G    P  + V        + ++ N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 335 LNGTIPSGLFT--SPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF 392
              +IP   F        ++ L NN  T S+         L  + L+ N     ++   F
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 393 AELKNLLG-LDLSHNSLSLSTLLPVNSSFPYLSMLSLSS 430
             + +    LD+S  S+   T LP      +L  L   +
Sbjct: 201 GGVYSGPSLLDVSQTSV---TALPSK-GLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 35/236 (14%)

Query: 54  VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLSV 112
              L L  + L  +IPS +   +LP++  + ++ +      +    F     + H+ +  
Sbjct: 33  TQTLKLIETHLR-TIPSHA-FSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIRN 89

Query: 113 SSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
           +     I  +    L  L  L +      GL        V + +    L +        +
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNT---GLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 172 P--SFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
           P  +F    +   +L L N G   S+    F    L  + L+ NK LT +          
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA------ 199

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPS-TLSNLQQLRHLDLSN 284
            F  +Y               S  + LD+S  + +  +PS  L +L++L   +   
Sbjct: 200 -FGGVY---------------SGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 76/279 (27%)

Query: 323 HSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN 382
           H      ++   +   IPS     P  +++ L    L    S++ S L N+  + +S + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP-VNSSFPYLSMLSLSSCNISEFPD--F 439
               +E + F  L  +  +++ +   +L+ + P      P L  L + +  +  FPD   
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 440 LRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLR 499
           + +     IL+++DN        ++ ++  +    L                    L L 
Sbjct: 126 VYSTDIFFILEITDN-------PYMTSIPVNAFQGLC--------------NETLTLKLY 164

Query: 500 SNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
           +N                                        ++   + NG        +
Sbjct: 165 NNGFT-------------------------------------SVQGYAFNG--------T 179

Query: 560 SLWFLDMRMNNFHGSIPQ-TFSK-GSRLTILNLNDNQLE 596
            L  + +  N +   I +  F    S  ++L+++   + 
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 16/198 (8%)

Query: 492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM 551
                 +    ++  IP LPPS   + +    L      +F N+ +I  + +S +     
Sbjct: 12  QEEDFRVTCKDIQ-RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 552 IPP-CLAN-SSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVP--LSLVNC 606
           +      N S +  +++R       I      +   L  L + +  L+   P    + + 
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYST 129

Query: 607 SFLEVLDVGNNRINGTFPAWL--GALSELQVLILRSNRFHGPITYSVTRFPF--PKLRIL 662
               +L++ +N    + P     G  +E   L L +N F      SV  + F   KL  +
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-----SVQGYAFNGTKLDAV 184

Query: 663 DLSNNEFTGVLPTRYFQN 680
            L+ N++  V+    F  
Sbjct: 185 YLNKNKYLTVIDKDAFGG 202

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 40/277 (14%), Positives = 86/277 (31%), Gaps = 63/277 (22%)

Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
                ++  +I   P    +    Q L L +  +R         +     ++L       
Sbjct: 13  EEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLR--------TIPSHAFSNL------- 54

Query: 483 TGIELLPWKNLRYLDLRSNSLKGSIP---FLP-PSLNFISVSNNKLSGEIPLS-FCNMSS 537
                    N+  + +  +     +    F     +  I + N +    I       +  
Sbjct: 55  --------PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106

Query: 538 IFYVNLSNNSLNGMIPPCLA---NSSLWFLDMRMNNFHGSIP-QTFSK-GSRLTILNLND 592
           + ++ + N  L  M P           + L++  N +  SIP   F    +    L L +
Sbjct: 107 LKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 593 NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652
           N    SV     N + L+ + +  N+           L+ +       + F G  +    
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNK----------YLTVID-----KDAFGGVYS---- 205

Query: 653 RFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNN 689
                   +LD+S    T  LP++  ++ + ++  N 
Sbjct: 206 -----GPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 69/239 (28%)

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDV-GNNRINGTFPAWLGALSELQVLILRSNRF 643
              L L +  L      +  N   +  + V  +  +          LS++  + +R+ R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 644 HGPITYSVTRFPF---PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYIN 700
              +T  +        P L+ L + N             +                    
Sbjct: 93  ---LT-YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS-------------------- 128

Query: 701 YGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVV--GKLNSLKGLNFSHN 758
                                  +IF  ++++ N +   IP     G  N    L   +N
Sbjct: 129 ----------------------TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 759 KLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL---------NFLQVLNLSQNQL 808
             T +  Y+  N T+L+++ L+ NK        LT +         +   +L++SQ  +
Sbjct: 167 GFTSVQGYAF-NGTKLDAVYLNKNK-------YLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
               ++    Q RIP +     S + L      L  +  ++  NL  +  + +S +    
Sbjct: 14  EDFRVTCKDIQ-RIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 787 EIPWQL-TSLNFLQVLNLSQNQLVGPIPQG 815
           ++      +L+ +  + +   + +  I   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 727 TTIDLSGNKFQGRIPEVV-GKLNSLKGLNFSHNK-LTGLIPYSLENLTQLESLDLSSNKV 784
           + I +S +    ++       L+ +  +   + + LT + P +L+ L  L+ L + +  +
Sbjct: 58  SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

Query: 785 AGEIP--WQLTSLNFLQVLNLSQNQLVGPIPQG 815
               P   ++ S +   +L ++ N  +  IP  
Sbjct: 118 K-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 48/212 (22%), Positives = 75/212 (35%), Gaps = 20/212 (9%)

Query: 249 NLSQLTYLDLSYNNFS---GHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
            ++    ++    N +     +P           L LS N             T+L+ L+
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDT------TILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 306 FSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISN 365
               +L          L  L T+ LS+N L  ++P    T P L  +D+  N+LT S+  
Sbjct: 62  LDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

Query: 366 SI-SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPY 422
                L  L +L L  N L   +   +      L  L L++N+L   T LP    +    
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL---TELPAGLLNGLEN 173

Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDN 454
           L  L L   ++   P      H L    L  N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 45/210 (21%), Positives = 67/210 (31%), Gaps = 36/210 (17%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
             +   L+LS +       A +   ++L  L+L       L           L  L  L 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLD 83

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVF 220
           L+   +   +P     L +LT LD+    L  S+P      L  LQ L L  N+ L +  
Sbjct: 84  LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE-LKT-- 138

Query: 221 PKVNWSSPLRFMDLYGCNFMGSIPASL-GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRH 279
                                 +P  L     +L  L L+ NN +      L+ L+ L  
Sbjct: 139 ----------------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 280 LDLSNNKFTGQIPCIFANLTQLSFLDFSNN 309
           L L  N         F +   L F     N
Sbjct: 177 LLLQENSLYTIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 28/193 (14%)

Query: 492 NLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           +   ++    +L  ++P  LP     + +S N L      +    + +  +NL    L  
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT- 68

Query: 551 MIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL----SLVNC 606
            +        L  LD+  N    S+P        LT+L+++ N+L  S+PL     L   
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE- 125

Query: 607 SFLEVLDVGNNRI----NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---PKL 659
             L+ L +  N +     G          +L+ L L +N         +          L
Sbjct: 126 --LQELYLKGNELKTLPPGLL----TPTPKLEKLSLANNNLT-----ELPAGLLNGLENL 174

Query: 660 RILDLSNNEFTGV 672
             L L  N    +
Sbjct: 175 DTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 46/227 (20%), Positives = 72/227 (31%), Gaps = 59/227 (25%)

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
            TIL+L++N L      +L+  + L  L++    +          L  L  L L  N+  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQL- 89

Query: 645 GPITYSVTRFPF-----PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYI 699
                     P      P L +LD+S N  T  LP    +                    
Sbjct: 90  -------QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG------------------- 122

Query: 700 NYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNK 759
                                  L     + L GN+ +   P ++     L+ L+ ++N 
Sbjct: 123 -----------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 760 LTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN 806
           LT L    L  L  L++L L  N +   IP      + L    L  N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 50/240 (20%), Positives = 73/240 (30%), Gaps = 69/240 (28%)

Query: 578 TFSKGSRLTILNLNDNQLEGSVPLSL-VNCSFLEVLDVGNNRINGTFPAWLGALSELQVL 636
             SK +    +N +   L  ++P  L  +     +L +  N +     A L   + L  L
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 637 ILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696
            L        +T        P L  LDLS+N+    LP    Q                 
Sbjct: 61  NLDRAE----LTKLQVDGTLPVLGTLDLSHNQLQ-SLPLL-GQT---------------- 98

Query: 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFS 756
                                     L   T +D+S N+        +  L  L+ L   
Sbjct: 99  --------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 757 HNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS--------LNFLQVLNLSQNQL 808
            N+L  L P  L    +LE L L++N         LT         L  L  L L +N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--------NLTELPAGLLNGLENLDTLLLQENSL 184

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 5e-18
 Identities = 52/277 (18%), Positives = 103/277 (37%), Gaps = 23/277 (8%)

Query: 123 ISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT 182
               ++ +  +L   S     T         LN + +++ N  +   +    +  L ++T
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT------QNELNSIDQIIAN--NSDIKSVQGIQYLPNVT 71

Query: 183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGS 242
            L L    L   I + +  L NL  L L  NK +  +    +    L+ + L       S
Sbjct: 72  KLFLNGNKLT-DI-KPLANLKNLGWLFLDENK-VKDLSSLKDLKK-LKSLSLEHNGI--S 125

Query: 243 IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLS 302
               L +L QL  L L  N  +    + LS L +L  L L +N+ +  +P   A LT+L 
Sbjct: 126 DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 303 FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGS 362
            L  S N ++     +++ L +L  + L          +      +  ++   +  L   
Sbjct: 182 NLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT- 238

Query: 363 ISNSISELVNLIDLSLSSNNLSGNVEL-YMFAELKNL 398
               IS+  +    ++  +      E+ ++F +   +
Sbjct: 239 -PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 274

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 53/269 (19%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS- 111
                +L       S+    +   L  +  +    +  +   +  G    PN+  L L+ 
Sbjct: 25  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNS--DIKSVQ-GIQYLPNVTKLFLNG 77

Query: 112 --VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY 169
             ++         +++L  L  L L  N    L +      +++L +L+ L L       
Sbjct: 78  NKLTDIKP-----LANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEH--NGI 124

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
              + L +L  L SL LGN  +  +    + RL  L  L L  N+ ++ + P        
Sbjct: 125 SDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ-ISDIVP-------- 173

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
                            L  L++L  L LS N+ S  +   L+ L+ L  L+L + +   
Sbjct: 174 -----------------LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLN 214

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSS 318
           +     +NL   + +  ++  L  P   S
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 43/262 (16%)

Query: 393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLS 452
                 +  +L   S+   T     +    +  +  ++ +I      ++    +  L L+
Sbjct: 21  DAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 76

Query: 453 DNQIRGGIPNWIWNVGK-DTLNHLNLSHNFLTGIELLPW-KNLRYLDLRSNSLKGSIPFL 510
            N++       I  +     L  L L  N +  +  L   K L+ L L  N +   I  L
Sbjct: 77  GNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-DINGL 130

Query: 511 P--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRM 568
              P L  + + NNK++    LS   ++ +  ++L +N ++ ++P               
Sbjct: 131 VHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--------------- 173

Query: 569 NNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLG 628
                      +  ++L  L L+ N +     L+      L+VL++ +            
Sbjct: 174 ----------LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQS 221

Query: 629 ALSELQVLILRSNRFHGPITYS 650
            L     +         P   S
Sbjct: 222 NLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 35/234 (14%)

Query: 578 TFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLI 637
           T ++ + +  +  N++ ++    +       +  L +  N++    P  L  L  L  L 
Sbjct: 41  TQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96

Query: 638 LRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM 697
           L  N+    +    +     KL+ L L +N  + +    +    +++  GNN        
Sbjct: 97  LDENK----VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK------- 145

Query: 698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH 757
                      I  +  ++      L    T+ L  N+        +  L  L+ L  S 
Sbjct: 146 -----------ITDITVLSR-----LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 187

Query: 758 NKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGP 811
           N ++ L    L  L  L+ L+L S +   +     ++L     +  +   LV P
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 39/228 (17%), Positives = 87/228 (38%), Gaps = 43/228 (18%)

Query: 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-KNLRYLDLRSNSLK 504
               +L    +   +         ++++ +  +++ +  ++ + +  N+  L L  N L 
Sbjct: 26  TIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 81

Query: 505 GSIPFLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLW 562
             I  L    +L ++ +  NK+  ++  S  ++  +  ++L +N ++  I   +    L 
Sbjct: 82  -DIKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLE 137

Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
            L +  N    +     S+ ++L  L+L DNQ+   VPL+    + L+ L +  N I+  
Sbjct: 138 SLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISD- 192

Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
                  L  L  L                      L +L+L + E  
Sbjct: 193 -------LRALAGL--------------------KNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 59/226 (26%)

Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
           +     NL    +  +V  +    + ++ +   N+ I       +  L  +  L L  N+
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 643 FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
               +T          L  L L  N+                                  
Sbjct: 80  ----LTDIKPLANLKNLGWLFLDENKVK-------------------------------- 103

Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
                        ++   K L    ++ L  N         +  L  L+ L   +NK+T 
Sbjct: 104 -------------DLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD 148

Query: 763 LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           +    L  LT+L++L L  N+++ +I   L  L  LQ L LS+N +
Sbjct: 149 ITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 46/314 (14%), Positives = 94/314 (29%), Gaps = 86/314 (27%)

Query: 472 LNHLNLSHNFLTGIELLP-WKNLRYLDLRSNSLKGSIPFL--PPSLNFISVSNNKLSGEI 528
               NL    +T         ++  +   ++ +K S+  +   P++  + ++ NKL+   
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
           PL+  N+ ++ ++ L  N +  +                                +L  L
Sbjct: 85  PLA--NLKNLGWLFLDENKVKDLSS-------------------------LKDLKKLKSL 117

Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT 648
           +L  N +     L   +   LE L +GNN+I       L  L++L  L L  N+    I+
Sbjct: 118 SLEHNGISDINGLV--HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ----IS 169

Query: 649 YSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSA 708
             V      KL+ L LS N  + +      +N                            
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNL--------------------------- 202

Query: 709 ILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSL 768
                               ++L   +   +       L     +  +   L    P  +
Sbjct: 203 ------------------DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEII 242

Query: 769 ENLTQLESLDLSSN 782
            +    E  ++  +
Sbjct: 243 SDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 57/193 (29%)

Query: 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPT 675
              I   F     A +E     L+       +T +VT+     +  +  +N++   V   
Sbjct: 11  PTPIKQIFS--DDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSDIKSVQGI 64

Query: 676 RYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK 735
           +Y  N                                              T + L+GNK
Sbjct: 65  QYLPNV---------------------------------------------TKLFLNGNK 79

Query: 736 FQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL 795
               I + +  L +L  L    NK+  L    L++L +L+SL L  N ++ +I   L  L
Sbjct: 80  LT-DI-KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLVHL 133

Query: 796 NFLQVLNLSQNQL 808
             L+ L L  N++
Sbjct: 134 PQLESLYLGNNKI 146

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 50/371 (13%), Positives = 99/371 (26%), Gaps = 98/371 (26%)

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           +   S +    L    +     +++F        +L  + ++  +              L
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFA-------VLLEDDSVKEI-------------VL 39

Query: 235 YGCNF----MGSIPASLGNLSQLTYLDLSYNNFS----------GHIPSTLSNLQQLRHL 280
            G          +  ++ +   L   + S                 +   L    +L  +
Sbjct: 40  SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99

Query: 281 DLSNNKFTGQIPCIFANL----TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
            LS+N F         +     T L  L   NN L GP +             ++     
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQA----------GAKIARALQE 148

Query: 337 GTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELK 396
             +      +P L SI    N+L        ++                      F   +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK---------------------TFQSHR 187

Query: 397 NLLGLDLSHNSLS-------LSTLLPVNSSFPYLSMLSLSSCNISE-----FPDFLRTQH 444
            L  + +  N +        L   L        L +L L     +          L++  
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQE---LKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 445 RLQILDLSDNQIRG----GIPNWIWNVGKDTLNHLNLSHNFLT--GIELL------PWKN 492
            L+ L L+D  +       + +    +    L  L L +N +    +  L         +
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 493 LRYLDLRSNSL 503
           L +L+L  N  
Sbjct: 305 LLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 58/378 (15%), Positives = 103/378 (27%), Gaps = 92/378 (24%)

Query: 247 LGNLSQLTYLDLSYNNFSG----HIPSTLSNLQQLRHLDLSNNKFTGQ----IPCIFANL 298
           +   S +    L  +  +      + + L     ++ + LS N    +    +    A+ 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQ 358
             L   +FS+             L  L+                L   P L ++ L +N 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNA 105

Query: 359 LTG----SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
                   + + +S+   L  L L +N L G       A             +L    + 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIAR------------ALQELAVN 152

Query: 415 PVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRLQILDLSDNQIRG-GIPNWIWNVG 468
               + P L  +      +       +    ++   L  + +  N IR  GI + +    
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 469 KD--TLNHLNLSHNFLT--GIE-----LLPWKNLRYLDLRSNSL--KGSIPFLPPSLNFI 517
                L  L+L  N  T  G       L  W NLR L L    L  +G+          +
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA--------AV 264

Query: 518 SVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQ 577
             +          S      +  + L  N +       L         +           
Sbjct: 265 VDA---------FSKLENIGLQTLRLQYNEIELDAVRTLKTV------IDEKM------- 302

Query: 578 TFSKGSRLTILNLNDNQL 595
                  L  L LN N+ 
Sbjct: 303 -----PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 60/389 (15%), Positives = 114/389 (29%), Gaps = 98/389 (25%)

Query: 54  VTGLDLSCSRL--HGSIPSDSSLFSLPHLQILNLAFNDFNY---SYISPGFTRFPNLAHL 108
           + G  L    +         + L     ++ + L+ N        ++S       +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 109 NLS---VSSFSGQIPAEISHLSK-------LVSLDLSGNSQLGLDTPVLKALVQNLNELQ 158
             S         +IP  +  L +       L ++ LS N   G      + L+       
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTA--QEPLI------- 115

Query: 159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGL-------------QGSIPENIFRLPNL 205
                          FL+  + L  L L N GL             + ++ +     P L
Sbjct: 116 --------------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161

Query: 206 QNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF-- 263
           +++I   N  L +                           +  +   L  + +  N    
Sbjct: 162 RSIICGRN-RLENG----------------SMKEWAK---TFQSHRLLHTVKMVQNGIRP 201

Query: 264 ---SGHIPSTLSNLQQLRHLDLSNNKFTGQ----IPCIFANLTQLSFLDFSNNQLNGP-- 314
                 +   L+  Q+L+ LDL +N FT      +     +   L  L  ++  L+    
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 315 --ISSSVSRLH--SLVTIYLSYNSLNG----TIPSGLFTS-PLLESIDLRNNQLT----- 360
             +  + S+L    L T+ L YN +      T+ + +    P L  ++L  N+ +     
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 321

Query: 361 -GSISNSISELVNLIDLSLSSNNLSGNVE 388
              I    S         L       + E
Sbjct: 322 VDEIREVFSTRGRGELDELDDMEELTDEE 350

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.6 bits (181), Expect = 7e-14
 Identities = 57/327 (17%), Positives = 108/327 (33%), Gaps = 70/327 (21%)

Query: 398 LLGLDLSHNSLS------LSTLLPVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRL 446
           + G  L  ++++      +  +L  + S   +  + LS   I         + + ++  L
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDS---VKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 447 QILDLSDNQIRGGIPNWIWNVGK---------DTLNHLNLSHNFLT--GIELL-----PW 490
           +I + SD    G + + I    +           L+ + LS N       E L       
Sbjct: 63  EIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 491 KNLRYLDLRSNSL-KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL- 548
             L +L L +N L   +   +  +L  ++V+             N   +  +    N L 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK---------NAPPLRSIICGRNRLE 172

Query: 549 -NGMIPPCLA---NSSLWFLDMRMNNFH-----GSIPQTFSKGSRLTILNLNDNQL--EG 597
              M         +  L  + M  N          + +  +    L +L+L DN     G
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 598 SVPLS--LVNCSFLEVLDVGNNRINGTFPAWLGALSE---------LQVLILRSNRFH-- 644
           S  L+  L +   L  L + +  ++        A+ +         LQ L L+ N     
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 645 -GPITYSVTRFPFPKLRILDLSNNEFT 670
                 +V     P L  L+L+ N F+
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 51/280 (18%)

Query: 556 LANSSLWFLDMRMNNFHG----SIPQTFSKGSRLTILNLNDNQL--EGSVPLS--LVNCS 607
           +A  S+    ++++        S+     +   +  + L+ N +  E +  LS  + +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 608 FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNN 667
            LE+ +  +            AL  L +  L                  PKL  + LS+N
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKC---------------PKLHTVRLSDN 104

Query: 668 EFT--GVLP-TRYFQNFQAMMH---GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEK 721
            F      P   +      + H    NN         I       +  L    VN + + 
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-------ARALQELAVNKKAKN 157

Query: 722 VLNIFTTIDLSGNKFQGR----IPEVVGKLNSLKGLNFSHNKLT-----GLIPYSLENLT 772
              +  +I    N+ +        +       L  +    N +       L+   L    
Sbjct: 158 APPL-RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 773 QLESLDLSSNKV----AGEIPWQLTSLNFLQVLNLSQNQL 808
           +L+ LDL  N      +  +   L S   L+ L L+   L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 52/380 (13%), Positives = 102/380 (26%), Gaps = 113/380 (29%)

Query: 446 LQILDLSDNQIRG-GIPNWIWNVGK-DTLNHLNLSHNFLT-------GIELLPWKNLRYL 496
           ++   L  + I      +    + + D++  + LS N +           +   K+L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 497 DLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL--NGMIP- 553
           +            +P +L  +             +      +  V LS+N+       P 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLL-----------QALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 554 -PCLA-NSSLWFLDMRMNNF-------------HGSIPQTFSKGSRLTILNLNDNQL--E 596
              L+ ++ L  L +  N                 ++ +       L  +    N+L   
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 597 GSVPLS--LVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRF 654
                +    +   L  + +  N I          L E     L                
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRP--EGIEHLLLEG----LAYC------------- 215

Query: 655 PFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKG 714
              +L++LDL +N FT                       G            SA+     
Sbjct: 216 --QELKVLDLQDNTFT---------------------HLGS-----------SAL----- 236

Query: 715 VNMEMEKVLNIFTTIDLSGNKFQGR----IPEVVGKLN--SLKGLNFSHNKLT-----GL 763
                 K       + L+      R    + +   KL    L+ L   +N++       L
Sbjct: 237 --AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 764 IPYSLENLTQLESLDLSSNK 783
                E +  L  L+L+ N+
Sbjct: 295 KTVIDEKMPDLLFLELNGNR 314

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 51/370 (13%), Positives = 108/370 (29%), Gaps = 91/370 (24%)

Query: 471 TLNHLNLSHNFLT-------GIELLPWKNLRYLDLRSNSL--KGSIPFLPPSLNFISVSN 521
           ++   +L  + +T          LL   +++ + L  N++  + +               
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAAR-------------- 50

Query: 522 NKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSK 581
                 +  +  +   +     S+     +                       + Q   K
Sbjct: 51  -----WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-------------LLLQALLK 92

Query: 582 GSRLTILNLNDNQL--EGSVPLS--LVNCSFLEVLDVGNNRINGTFPAWLGALSE-LQVL 636
             +L  + L+DN        PL   L   + LE L + NN +    P     ++  LQ L
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQEL 149

Query: 637 ILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696
            +     + P            LR +    N        + +    A    ++       
Sbjct: 150 AVNKKAKNAP-----------PLRSIICGRNRL-ENGSMKEW----AKTFQSHRLLHTVK 193

Query: 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTI---DLSGNKFQGR----IPEVVGKLNS 749
           M  N         +  +G+   + + L     +   DL  N F       +   +    +
Sbjct: 194 MVQNG--------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 750 LKGLNFSHNKLTG----LIPYSLENL--TQLESLDLSSNKVAGEIPWQL-----TSLNFL 798
           L+ L  +   L+      +  +   L    L++L L  N++  +    L       +  L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 799 QVLNLSQNQL 808
             L L+ N+ 
Sbjct: 306 LFLELNGNRF 315

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 33/170 (19%)

Query: 174 FLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLRFM 232
             T L++L SL L +  L   I    F  +PNL+ L LS N  L ++   +         
Sbjct: 59  TPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH-LHTLDEFL--------- 107

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPS-TLSNLQQLRHLDLSNNKFTGQI 291
                           +L  L  L L  N+    +      ++ QL+ L LS N+ +   
Sbjct: 108 --------------FSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 292 PCIFAN---LTQLSFLDFSNNQLNGPISSSVSRLHSLV--TIYLSYNSLN 336
             +  +   L +L  LD S+N+L     + + +L + V   +YL  N L 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 53/229 (23%), Positives = 83/229 (36%), Gaps = 52/229 (22%)

Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP-CIFANLTQLSFLDFSNNQLN 312
             L  S      ++P +L +      LDLS+N  +          LT L  L  S+N LN
Sbjct: 21  NILSCSKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 313 GPISSSV-SRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV 371
             ISS     + +L  + LS N L+ T+   LF+                        L 
Sbjct: 78  F-ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSD-----------------------LQ 112

Query: 372 NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC 431
            L  L L +N++   V+   F ++  L  L LS N +   +  PV       + L     
Sbjct: 113 ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI---SRFPVEL-IKDGNKLP---- 163

Query: 432 NISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN 480
                        +L +LDLS N+++      +  +     N L L +N
Sbjct: 164 -------------KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 48/236 (20%), Positives = 76/236 (32%), Gaps = 79/236 (33%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSV 112
           +   LDLS + L   + ++ +   L +L  L L+ N    ++IS                
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL--NFISSE-------------- 82

Query: 113 SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP 172
            +F          +  L  LDLS N               +L+ L E +           
Sbjct: 83  -AFVP--------VPNLRYLDLSSN---------------HLHTLDEFL----------- 107

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSPLRF 231
              ++L +L  L L N  +   +  N F  +  LQ L LS N+ ++    ++        
Sbjct: 108 --FSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELI------- 156

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRH--LDLSNN 285
                             L +L  LDLS N       + L  L       L L NN
Sbjct: 157 -------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 13/185 (7%)

Query: 492 NLRYLDLRSNSLKGSIP-FLPPSLNFISVSNNKLSGEIP--LSFCNMSSIFYVNLSNNSL 548
               L      L  ++P  LP     + +S+N LS  +    +   ++++  + LS+N L
Sbjct: 19  ASNILSCSKQQLP-NVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 549 NGMIPPCLAN-SSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNC 606
           N +         +L +LD+  N+ H ++    FS    L +L L +N +      +  + 
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 607 SFLEVLDVGNNRI----NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRIL 662
           + L+ L +  N+I              L +L +L L SN+        + + P      L
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 663 DLSNN 667
            L NN
Sbjct: 195 YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 727 TTIDLSGNKFQGRIPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
             +DLS N       E    +L +L  L  SHN L  +   +   +  L  LDLSSN + 
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 786 GEIPWQ-LTSLNFLQVLNLSQNQLVGPIPQG 815
             +     + L  L+VL L  N +V  + + 
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVV-VDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
            ++ LS N       E    + +L+ L+ S N L  L  +   +L  LE L L +N +  
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV- 125

Query: 787 EIPW-QLTSLNFLQVLNLSQNQL 808
            +       +  LQ L LSQNQ+
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 22/153 (14%)

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIP--QTFSKGSRLTILNLNDNQLEGS 598
           ++ S   L   +P  L  S    LD+  NN    +    T ++ + L  L L+ N L   
Sbjct: 23  LSCSKQQLPN-VPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFI 79

Query: 599 VPLSLVNCSFLEVLDVGNNRI----NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRF 654
              + V    L  LD+ +N +       F      L  L+VL+L +N     I   V R 
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYNN----HIV-VVDRN 130

Query: 655 PF---PKLRILDLSNNEFTGVLPTRYFQNFQAM 684
            F    +L+ L LS N+ +   P    ++   +
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 40/203 (19%), Positives = 61/203 (30%), Gaps = 55/203 (27%)

Query: 609 LEVLDVGNNRINGTFPAW-LGALSELQVLILRSNRFHGPITYSVTRFPF---PKLRILDL 664
             +LD+ +N ++     W    L+ L  L+L  N  +      ++   F   P LR LDL
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-----FISSEAFVPVPNLRYLDL 95

Query: 665 SNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLN 724
           S+N     L    F + QA+                                        
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEV-------------------------------------- 116

Query: 725 IFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP---YSLENLTQLESLDLSS 781
               + L  N            +  L+ L  S N+++            L +L  LDLSS
Sbjct: 117 ----LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 782 NKVAGEIPWQLTSLNFLQVLNLS 804
           NK+       L  L       L 
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLY 195

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 4/141 (2%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            IP +L     +T + L  N      P   S  ++LR +DLSNN+ +   P  F  L  L
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLT 360
           + L    N++     S    L SL  + L+ N +N  +    F     L  + L +N+L 
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 361 GSISNSISELVNLIDLSLSSN 381
                + S L  +  + L+ N
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 11/143 (7%)

Query: 266 HIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV-SRLHS 324
           ++P T++ +       L  N      P  F+   +L  +D SNNQ++  ++      L S
Sbjct: 29  NLPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 325 LVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383
           L ++ L  N +   +P  LF     L+ + L  N++     ++  +L NL  LSL  N L
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 384 SGNVELYMFAELKNLLGLDLSHN 406
              +    F+ L+ +  + L+ N
Sbjct: 141 Q-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 26/156 (16%)

Query: 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNL 216
            E+ L    +    P   +    L  +DL N  +   +  + F  L +L +L+L  NK +
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK-I 92

Query: 217 TSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ 276
           T +   +                          L  L  L L+ N  +        +L  
Sbjct: 93  TELPKSL-----------------------FEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
           L  L L +NK        F+ L  +  +  + N   
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T I L  N  +   P        L+ ++ S+N+++ L P + + L  L SL L  NK+  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 787 EIPWQL-TSLNFLQVLNLSQNQLVGPIPQG 815
           E+P  L   L  LQ+L L+ N++   +   
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINC-LRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 27/82 (32%), Positives = 38/82 (46%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             IDLS N+     P+    L SL  L    NK+T L     E L  L+ L L++NK+  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 787 EIPWQLTSLNFLQVLNLSQNQL 808
                   L+ L +L+L  N+L
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 22/80 (27%), Positives = 37/80 (46%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
            ++ L GNK       +   L SL+ L  + NK+  L   + ++L  L  L L  NK+  
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 787 EIPWQLTSLNFLQVLNLSQN 806
                 + L  +Q ++L+QN
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 499 RSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP--- 554
           R   L   IP  LP ++  I +  N +    P +F     +  ++LSNN ++  + P   
Sbjct: 19  RGKGLT-EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAF 76

Query: 555 -CLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL-SLVNCSFLEVL 612
             L +  L  L +  N         F     L +L LN N++   + + +  +   L +L
Sbjct: 77  QGLRS--LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLL 133

Query: 613 DVGNNRINGTFPAWLGALSELQVLILRSN 641
            + +N++          L  +Q + L  N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 38/170 (22%)

Query: 338 TIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN 397
            IP+ L  +  +  I L  N +                  +             F+  K 
Sbjct: 25  EIPTNLPET--ITEIRLEQNTIK----------------VIPPG---------AFSPYKK 57

Query: 398 LLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDN 454
           L  +DLS+N +   + L  +       L+ L L    I+E P         LQ+L L+ N
Sbjct: 58  LRRIDLSNNQI---SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114

Query: 455 QIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSN 501
           +I   +    +      LN L+L  N L  I      P + ++ + L  N
Sbjct: 115 KIN-CLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 25/134 (18%)

Query: 564 LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP----LSLVNCSFLEVLDVGNNRI 619
           + +  N      P  FS   +L  ++L++NQ+   +       L +   L  L +  N+I
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS---LNSLVLYGNKI 92

Query: 620 ----NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---PKLRILDLSNNEFTGV 672
                  F      L  LQ+L+L +N+ +      +    F     L +L L +N+   +
Sbjct: 93  TELPKSLF----EGLFSLQLLLLNANKIN-----CLRVDAFQDLHNLNLLSLYDNKLQTI 143

Query: 673 LPTRYFQNFQAMMH 686
                F   +A+  
Sbjct: 144 -AKGTFSPLRAIQT 156

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 54  VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLSV 112
           +T + L  + +   IP  +       L+ ++L+ N    S ++P  F    +L  L L  
Sbjct: 34  ITEIRLEQNTIK-VIPPGA-FSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYG 89

Query: 113 SSFSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
           +  + ++P  +   L  L  L L+ N ++     +     Q+L+ L  L L    +    
Sbjct: 90  NKIT-ELPKSLFEGLFSLQLLLLNAN-KI---NCLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 172 PSFLTNLSSLTSLDLGN 188
               + L ++ ++ L  
Sbjct: 145 KGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 51/175 (29%)

Query: 447 QILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSL 503
             + L  N I+   P       K  L  ++LS+N ++ +        ++L  L L  N +
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKK--LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
                 LP SL                 F  + S+  + L+ N +N              
Sbjct: 93  T----ELPKSL-----------------FEGLFSLQLLLLNANKIN-------------- 117

Query: 564 LDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617
                      +    F     L +L+L DN+L+     +      ++ + +  N
Sbjct: 118 ----------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 57/356 (16%), Positives = 116/356 (32%), Gaps = 57/356 (16%)

Query: 107 HLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLD--TPVLKALVQNLNELQELVLNS 164
           +  L++   S  +    S    + SLDLS N  L       +++A       +  L L+ 
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 165 VDMSYEVPSFL-----TNLSSLTSLDLGNCGLQGSIPENI---FRLPN--LQNLILSYN- 213
             + ++    L        +++TSL+L    L     + +          +  L L +N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 214 ------KNLTSVFPKVNWSSPLRFMDLYGCNF----MGSIPASLGNL-SQLTYLDLSYNN 262
                       F  +  S  +  ++L G +        +   L  + + +  L+L  NN
Sbjct: 121 FSSKSSSEFKQAFSNLPAS--ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 263 FS----GHIPSTLSNL-QQLRHLDLSNNKFTGQ-----IPCIFANLTQLSFLDFSNNQLN 312
            +      +   L+++   +  LDLS N    +          +    +  L+   N L+
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 313 GP----ISSSVSRLHSLVTIYLSYNSLNGT-------IPSGLFTSPLLESIDLRNNQLTG 361
           GP    +      L  L T+YL Y+ +          + +       +  +D    ++  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

Query: 362 SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLG---------LDLSHNSL 408
           S S  IS L+  +       +L     ++      N+              +   L
Sbjct: 299 SHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 46/314 (14%), Positives = 100/314 (31%), Gaps = 55/314 (17%)

Query: 243 IPASLGNLSQLTYLDLSYNNFSG----HIPSTL-SNLQQLRHLDLSNNKFTGQIPCIFA- 296
           +         +T LDLS NN        +     +    +  L+LS N    +       
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 297 ----NLTQLSFLDFSNNQLNGP----ISSSVSRLH-SLVTIYLSYNSLNGT----IPSGL 343
                   ++ L+ S N L+      +  +++ +  ++  + L +N  +           
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 344 FTSPL-LESIDLRNNQLTGSISNSISEL-----VNLIDLSLSSNNLSGNVELYMFAELKN 397
              P  + S++LR N L    S+ + ++      N+  L+L  NNL+      +   L +
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 398 ----LLGLDLSHNSLS------LSTLLPVNSSFPYLSMLSLSSCNISE-----FPDFLRT 442
               +  LDLS N L       L+ +     +  ++  L+L    +             +
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPN--HVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGK-----DTLNHLNLSHNFLT--GIELL------P 489
              LQ + L  + ++         +G        +  ++ +   +       +       
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 490 WKNLRYLDLRSNSL 503
                   L +  L
Sbjct: 312 SGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 74.0 bits (182), Expect = 4e-14
 Identities = 58/361 (16%), Positives = 120/361 (33%), Gaps = 73/361 (20%)

Query: 173 SFLTNLSSLTSLDLGNCGLQGSIPENIFRL-----PNLQNLILSYNKNLTSVFPKVNWSS 227
            F +    +TSLDL    L       + +       ++ +L LS N +L           
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFK-------- 66

Query: 228 PLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSG----HIPSTLSNLQ-QLRHLDL 282
                     + +  I A+    + +T L+LS N  S      +  TL+ +   +  LDL
Sbjct: 67  --------NSDELVQILAA--IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 283 SNNKFTGQ-IPCIFANL----TQLSFLDFSNNQLNGP----ISSSVSRLH-SLVTIYLSY 332
             N F+ +               ++ L+   N L       +   ++ +  ++ ++ L  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 333 NSLNGT----IPSGLFTSPL-LESIDLRNNQLTGSISNSISELV-----NLIDLSLSSNN 382
           N+L       +   L + P  + S+DL  N L       ++ +      +++ L+L  N 
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236

Query: 383 L--SGNVEL-YMFAELKNLLGLDLSHNSL---------SLSTLLPVNSSFPYLSMLSLSS 430
           L       L  +   LK+L  + L ++ +         +L    P       + ++  + 
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK---IILVDKNG 293

Query: 431 CNIS-----EFPDFLRT-QHRLQILDLSDNQI---RGGIPNWIWNVGKDTLNHLNLSHNF 481
             I         + +R    +  +  L +  +   +    N       D L     +   
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 482 L 482
           L
Sbjct: 354 L 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 61/374 (16%), Positives = 108/374 (28%), Gaps = 82/374 (21%)

Query: 315 ISSSVSRLHSLVTIYLSYNSLNGTIPSGLF-----TSPLLESIDLRNNQLTGSISNSISE 369
           +    S  H + ++ LS N+L       L      T   + S++L  N L    S+ + +
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 370 LV-----NLIDLSLSSNNLSGNVELYMFAEL-----KNLLGLDLSHNSLS-------LST 412
           ++     N+  L+LS N L          +        +  LDL  N  S          
Sbjct: 74  ILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 413 LLPVNSSFPYLSMLSLSSCNISE-----FPDFLRTQH-RLQILDLSDNQIRGGIPNWIWN 466
              + +S   ++ L+L   ++           L      +  L+L  N +       +  
Sbjct: 133 FSNLPAS---ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189

Query: 467 VGKD---TLNHLNLSHNFLT--GIELL------PWKNLRYLDLRSNSLKGSIPFLPPSLN 515
                  ++  L+LS N L       L         ++  L+L  N L G       SL 
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP------SLE 243

Query: 516 FISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA--------NSSLWFLDMR 567
            +            L   ++  +  V L  + +  M                 +  +D  
Sbjct: 244 NLK-----------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 568 MNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL 627
               H S     S   R      +          SL+N   +       N  +   P   
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKAD--------VPSLLNQCLIFAQKHQTNIEDLNIP--- 341

Query: 628 GALSELQVLILRSN 641
               EL+  I    
Sbjct: 342 ---DELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 53/340 (15%), Positives = 104/340 (30%), Gaps = 65/340 (19%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSL--------PHLQILNLAFNDFNYS---YISPGFTR 101
            VT LDLS + L        S   L          +  LNL+ N   +     +      
Sbjct: 23  GVTSLDLSLNNL-----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 102 FP-NLAHLNLSVSSFSGQIPAEISHL-----SKLVSLDLSGNSQLGLD--TPVLKALVQN 153
            P N+  LNLS +  S +   E+          +  LDL  N        +   +A    
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNL 136

Query: 154 LNELQELVLNSVDMSYE-----VPSFLTNLSSLTSLDLGNCGLQGSIPENIFRL-----P 203
              +  L L   D+  +     +       +++ SL+L    L       + +       
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 204 NLQNLILSYN-------KNLTSVFPKVNWSSPLRFMDLYGCNF----MGSIPASLGNLSQ 252
           ++ +L LS N         L  +F  +   + +  ++L         + ++     +L  
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIP--NHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 253 LTYLDLSYNNFSG-------HIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ----- 300
           L  + L Y+            + +   N+Q++  +D +  +         +NL +     
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

Query: 301 LSFLDFSNNQL-----NGPISSSVSRLHSLVTIYLSYNSL 335
                  N  L     +      ++    L     +   L
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 47/353 (13%), Positives = 98/353 (27%), Gaps = 74/353 (20%)

Query: 511 PPSLNFISVSNNKLSGEIPLSFC-----NMSSIFYVNLSNNSLNGMIPPCLA------NS 559
           P  +  + +S N L     +          +S+  +NLS NSL       L        +
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 560 SLWFLDMRMNNFHGSIPQTFSKG-----SRLTILNLNDNQL--EGSVPLS----LVNCSF 608
           ++  L++  N           K        +T+L+L  N    + S         +  S 
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS- 139

Query: 609 LEVLDVGNNRINGTFPAWLGALSE--------LQVLILRSNRFHGP----ITYSVTRFPF 656
           +  L++  N +          L +        +  L LR N         +   +   P 
Sbjct: 140 ITSLNLRGNDLG---IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP- 195

Query: 657 PKLRILDLSNNEFT--GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKG 714
             +  LDLS N                  +     N     N+ +N         L    
Sbjct: 196 ASVTSLDLSANLLGLKSY------AELAYIFSSIPNHVVSLNLCLNC--------LHGPS 241

Query: 715 VNM--EMEKVLNIFTTIDLSGNKFQG-------RIPEVVGKLNSLKGLNFSHNKLTG--- 762
           +     ++  L    T+ L  +  +         +      +  +  ++ +  ++     
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301

Query: 763 -LIPYSLENL-TQLESLDLSSNKVAGEIPWQLTSLNF-----LQVLNLSQNQL 808
             I   +  L  + +   L +  +      Q    +      L+    +   L
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 243 IPASLGNLSQLTYLDLSYNNFSGHIPST--LSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
           IP           L L+ N F+  + +T     L QLR ++ SNNK T      F   + 
Sbjct: 30  IPQYT------AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 301 LSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQL 359
           ++ +  ++N+L          L SL T+ L  N +   + +  F     +  + L +NQ+
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

Query: 360 TGSISNSI-SELVNLIDLSLSSN 381
           T +++      L +L  L+L +N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 158 QELVLNSVDMSY-EVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKN 215
            EL LN+ + +  E       L  L  ++  N  +   I E  F     +  ++L+ N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR- 92

Query: 216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ 275
           L +V  K+                          L  L  L L  N  +     +   L 
Sbjct: 93  LENVQHKM-----------------------FKGLESLKTLMLRSNRITCVGNDSFIGLS 129

Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
            +R L L +N+ T   P  F  L  LS L+   N  N
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 266 HIPSTLSNLQQLRHLDLSNNKFTGQIPC-IFANLTQLSFLDFSNNQLNGPISSSVSRLHS 324
           HIP   + L       L+NN+FT      IF  L QL  ++FSNN++      +      
Sbjct: 29  HIPQYTAEL------RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 325 LVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLS 384
           +  I L+ N L   +   +F                         L +L  L L SN ++
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKG-----------------------LESLKTLMLRSNRIT 118

Query: 385 GNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLS------SCNISEF 436
             V    F  L ++  L L  N +   T +      +   LS L+L       +C ++  
Sbjct: 119 -CVGNDSFIGLSSVRLLSLYDNQI---TTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL 174

Query: 437 PDFLR 441
            ++LR
Sbjct: 175 GEWLR 179

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 727 TTIDLSGNKFQGRIPEVV-GKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
             + L+ N+F       +  KL  L+ +NFS+NK+T +   + E  + +  + L+SN++ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 786 GEIPWQL-TSLNFLQVLNLSQNQL 808
             +  ++   L  L+ L L  N++
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRI 117

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 78  PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEI-SHLSKLVSLDLSG 136
            +   L L  N+F     +  F + P L  +N S +  +  I        S +  + L+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 137 NSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIP 196
           N    +   + K L      L+ L+L S  ++         LSS+  L L +  +  ++ 
Sbjct: 91  NRLENVQHKMFKGLES----LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 197 ENIF-RLPNLQNLILSYN 213
              F  L +L  L L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 18/86 (20%), Positives = 36/86 (41%)

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
           L     I+ S NK            + +  +  + N+L  +     + L  L++L L SN
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115

Query: 783 KVAGEIPWQLTSLNFLQVLNLSQNQL 808
           ++          L+ +++L+L  NQ+
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 50/177 (28%)

Query: 376 LSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE 435
           L L++N  +      +F +L  L  ++ S+N +   T +    +F   S           
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---TDIEEG-AFEGAS----------- 81

Query: 436 FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKN 492
                     +  + L+ N++   + + ++  G ++L  L L  N +T +     +   +
Sbjct: 82  ---------GVNEILLTSNRLE-NVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSS 130

Query: 493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549
           +R L L  N +  ++                     P +F  + S+  +NL  N  N
Sbjct: 131 VRLLSLYDNQIT-TVA--------------------PGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 40/160 (25%)

Query: 447 QILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSL 503
             L L++N+    +           L  +N S+N +T IE         +  + L SN L
Sbjct: 35  AELRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

Query: 504 KGSIPFLPP-------SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCL 556
           +     +         SL  + + +N+++     SF  +SS+  ++L +N +        
Sbjct: 94  EN----VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT------- 142

Query: 557 ANSSLWFLDMRMNNFHGSIPQ-TFSKGSRLTILNLNDNQL 595
                            ++    F     L+ LNL  N  
Sbjct: 143 -----------------TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 26/135 (19%)

Query: 564 LDMRMNNFHGSIPQT--FSKGSRLTILNLNDNQ---LEGSVPLSLVNCSFLEVLDVGNNR 618
           L +  N F   +  T  F K  +L  +N ++N+   +E            +  + + +NR
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG---VNEILLTSNR 92

Query: 619 I----NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF---PKLRILDLSNNEFTG 671
           +    +  F      L  L+ L+LRSNR        V    F     +R+L L +N+ T 
Sbjct: 93  LENVQHKMF----KGLESLKTLMLRSNRIT-----CVGNDSFIGLSSVRLLSLYDNQITT 143

Query: 672 VLPTRYFQNFQAMMH 686
           V     F    ++  
Sbjct: 144 V-APGAFDTLHSLST 157

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 18/249 (7%)

Query: 151 VQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLIL 210
              L    +  L     S         LS + + +  N  +Q S+   +    NL+ L L
Sbjct: 15  DPGLANAVKQNLG--KQSVTDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 211 SYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPST 270
           S+N+ ++ + P  + +  L  + +            + +   L+ L L  N        +
Sbjct: 71  SHNQ-ISDLSPLKDLTK-LEELSVNRNRL--KNLNGIPSAC-LSRLFLDNNELRD--TDS 123

Query: 271 LSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
           L +L+ L  L + NNK    I  +   L++L  LD   N++       ++RL  +  I L
Sbjct: 124 LIHLKNLEILSIRNNKLK-SIVML-GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179

Query: 331 SYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL- 389
           +            +   L  +  +++          IS   + +D  +         E+ 
Sbjct: 180 TGQKC--VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVS 237

Query: 390 YMFAELKNL 398
           Y F+E  N+
Sbjct: 238 YKFSEYINV 246

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 19/190 (10%)

Query: 317 SSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDL 376
                L + V   L   S+   +     +   +++ +  N+ +  S++  +    NL +L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSG--VQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 377 SLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEF 436
            LS N +S   +L    +L  L  L ++ N L     +        LS L L +  + + 
Sbjct: 69  HLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGI----PSACLSRLFLDNNELRDT 121

Query: 437 PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK-DTLNHLNLSHNFLTGIE-LLPWKNLR 494
            D L     L+IL + +N+++      I  +G    L  L+L  N +T    L   K + 
Sbjct: 122 -DSLIHLKNLEILSIRNNKLKS-----IVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN 175

Query: 495 YLDLRSNSLK 504
           ++DL      
Sbjct: 176 WIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 18/207 (8%)

Query: 393 AELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDL 451
             L N +  +L   S++ L +          +   +  + NI      ++    L+ L L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQ----KELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHL 70

Query: 452 SDNQIRGGIPNWIWNVGKDT-LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFL 510
           S NQI       +  +   T L  L+++ N L  +  +P   L  L L +N L+     L
Sbjct: 71  SHNQISD-----LSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR-DTDSL 124

Query: 511 P--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRM 568
               +L  +S+ NNKL   + L    +S +  ++L  N +            + ++D+  
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDLTG 181

Query: 569 NNFHGSIPQTFSKGSRLTILNLNDNQL 595
                   +   +      +   D + 
Sbjct: 182 QKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 19/217 (8%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
             N    NL   S +  +      LS + + +   ++   L        +Q    L+EL 
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG------MQFFTNLKELH 69

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP 221
           L+   +S    S L +L+ L  L +    L+ ++         L  L L  N+ L     
Sbjct: 70  LSHNQIS--DLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNE-LRDTDS 123

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
            ++  + L  + +   N + SI   LG LS+L  LDL  N  +      L+ L+++  +D
Sbjct: 124 LIHLKN-LEILSIRN-NKLKSIV-MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWID 178

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSS 318
           L+  K   +       L   + +   + +   P   S
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 35/202 (17%), Positives = 77/202 (38%), Gaps = 40/202 (19%)

Query: 472 LNHLNLSHNFLTGIELLPW-KNLRYLDLRSNSLKGSIPFL--PPSLNFISVSNNKLSGEI 528
               NL    +T +        ++  +  +++++ S+  +    +L  + +S+N++S   
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLS 79

Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
           PL   +++ +  ++++ N L  +    + ++ L  L +  N        +      L IL
Sbjct: 80  PLK--DLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNEL--RDTDSLIHLKNLEIL 133

Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT 648
           ++ +N+L+  V L     S LEVLD+  N I             L  L            
Sbjct: 134 SIRNNKLKSIVMLG--FLSKLEVLDLHGNEIT--------NTGGLTRL------------ 171

Query: 649 YSVTRFPFPKLRILDLSNNEFT 670
                    K+  +DL+  +  
Sbjct: 172 --------KKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 37/230 (16%), Positives = 76/230 (33%), Gaps = 58/230 (25%)

Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
           S +   N +++ ++    +     + L+ L + +N+I+   P  L  L++L+ L +  NR
Sbjct: 41  SGVQNFNGDNSNIQSLAGMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96

Query: 643 FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
               +  ++   P   L  L L NNE        + +N                      
Sbjct: 97  ----LK-NLNGIPSACLSRLFLDNNELRDTDSLIHLKNL--------------------- 130

Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
                                     + +  NK   +   ++G L+ L+ L+   N++T 
Sbjct: 131 ------------------------EILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN 164

Query: 763 LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPI 812
                L  L ++  +DL+  K   E       L     +     + + P 
Sbjct: 165 TGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 38/194 (19%)

Query: 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPT 675
              IN  FP     L+      L        +T  V++     ++  +  N+    +   
Sbjct: 6   PTPINQVFP--DPGLANAVKQNLGKQS----VTDLVSQKELSGVQNFNGDNSNIQSLAGM 59

Query: 676 RYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK 735
           ++F N + +   +N                   I  +  +       L     + ++ N+
Sbjct: 60  QFFTNLKELHLSHNQ------------------ISDLSPLKD-----LTKLEELSVNRNR 96

Query: 736 FQGRIPEVVG-KLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS 794
               +  + G     L  L   +N+L       L +L  LE L + +NK+   I   L  
Sbjct: 97  ----LKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIV-MLGF 148

Query: 795 LNFLQVLNLSQNQL 808
           L+ L+VL+L  N++
Sbjct: 149 LSKLEVLDLHGNEI 162

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 48/230 (20%), Positives = 87/230 (37%), Gaps = 11/230 (4%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           +   C R     P  +  FS   +Q ++L+ +    S +    ++   L +L+L     S
Sbjct: 73  IAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNS---VDMSYEVPS 173
             I   ++  S LV L+LSG S        L+ L+ + + L EL L+        +   +
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189

Query: 174 FLTNLSSLTSLDLGNCGLQ---GSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP-L 229
                 ++T L+L           +   + R PNL +L LS +  L +   +  +    L
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249

Query: 230 RFMDLYGCNFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLR 278
           + + L  C  +       LG +  L  L +      G +      L  L+
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 73.4 bits (180), Expect = 6e-14
 Identities = 56/310 (18%), Positives = 103/310 (33%), Gaps = 30/310 (9%)

Query: 34  KEEKDCCSWDGVTCDMMT---GHVTGLDLS-----CSRLHGSIPSDSSLFSLPHLQILNL 85
           +E     SWD +  +++      +   +L      C R +  + SD SL+    L   NL
Sbjct: 1   RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWY-RLASDESLWQTLDLTGKNL 59

Query: 86  AFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTP 145
             +                 + ++  ++              ++  +DLS +    ++  
Sbjct: 60  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS--------PFRVQHMDLSNSV---IEVS 108

Query: 146 VLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNC-GLQGSIPENIFR-LP 203
            L  ++   ++LQ L L  + +S  + + L   S+L  L+L  C G      + +     
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168

Query: 204 NLQNLILSYNKNLT--SVFPKVNWSSP-LRFMDLYGCNFM---GSIPASLGNLSQLTYLD 257
            L  L LS+  + T   V   V   S  +  ++L G         +   +     L +LD
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 258 LSY-NNFSGHIPSTLSNLQQLRHLDLSN-NKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
           LS               L  L+HL LS       +       +  L  L       +G +
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 288

Query: 316 SSSVSRLHSL 325
                 L  L
Sbjct: 289 QLLKEALPHL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 47/281 (16%), Positives = 103/281 (36%), Gaps = 19/281 (6%)

Query: 271 LSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
            S+    + LDL+       +     +   ++      + ++ P++   S          
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFRVQHMDLS 101

Query: 331 SYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSS-NNLSGNVEL 389
           +      T+   L     L+++ L   +L+  I N++++  NL+ L+LS  +  S     
Sbjct: 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 161

Query: 390 YMFAELKNLLGLDLSH----NSLSLSTLLPVNSSFPYLSMLSLSSC--NISE--FPDFLR 441
            + +    L  L+LS         +   +   S    ++ L+LS    N+ +      +R
Sbjct: 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGYRKNLQKSDLSTLVR 219

Query: 442 TQHRLQILDLSD-NQIRGGIPNWIWNVGKDTLNHLNLSHNFL---TGIELLP-WKNLRYL 496
               L  LDLSD   ++       + +    L HL+LS  +      +  L     L+ L
Sbjct: 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNY--LQHLSLSRCYDIIPETLLELGEIPTLKTL 277

Query: 497 DLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSS 537
            +      G++  L  +L  + ++ +  +     +  N  +
Sbjct: 278 QVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKN 318

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 55/302 (18%), Positives = 100/302 (33%), Gaps = 53/302 (17%)

Query: 343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLD 402
                L +++DL    L   ++     L++   ++        +  L        +  +D
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVT---GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99

Query: 403 LSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIP 461
           LS++ + +STL  + S    L  LSL    +S    + L     L  L+LS         
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS--------- 150

Query: 462 NWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRS------NSLKGSIPFLPPSLN 515
                  +  L  L LS              L  L+L          ++ ++  +  ++ 
Sbjct: 151 -GCSGFSEFALQTL-LSSC----------SRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198

Query: 516 FISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRM-NNFHGS 574
            ++           LS          NL  + L+ ++  C    +L  LD+         
Sbjct: 199 QLN-----------LSGYRK------NLQKSDLSTLVRRC---PNLVHLDLSDSVMLKND 238

Query: 575 IPQTFSKGSRLTILNLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL 633
             Q F + + L  L+L+    +     L L     L+ L V     +GT      AL  L
Sbjct: 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298

Query: 634 QV 635
           Q+
Sbjct: 299 QI 300

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 31/204 (15%)

Query: 180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF 239
               +D     L  S+P  I    + + L L     L ++                   F
Sbjct: 15  GKKEVDCQGKSLD-SVPSGIPA--DTEKLDLQSTG-LATLSDAT---------------F 55

Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
            G        L++LT+L+L YN           +L +L  L L+NN+       +F +LT
Sbjct: 56  RG--------LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107

Query: 300 QLSFLDFSNNQLNGPISSSV-SRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNN 357
           QL  L    NQL   + S V  RL  L  + L+ N L  +IP+G F     L+++ L  N
Sbjct: 108 QLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTN 165

Query: 358 QLTGSISNSISELVNLIDLSLSSN 381
           QL      +   L  L  ++L  N
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNL 216
           ++L L S  ++    +    L+ LT L+L    LQ ++   +F  L  L  L L+ N+ L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQ-L 95

Query: 217 TSVFPKV-NWSSPLRFMDLYGCNFMGSIPASL-GNLSQLTYLDLSYNNFSGHIPS-TLSN 273
            S+   V +  + L  + L G N + S+P+ +   L++L  L L+ N     IP+     
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDK 153

Query: 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
           L  L+ L LS N+        F  L +L  +    NQ +
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 30/179 (16%)

Query: 108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDM 167
           L+L  +  +    A    L+KL  L+L  N    L   V   L +    L  L L +  +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE----LGTLGLANNQL 95

Query: 168 SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKVNWS 226
           +        +L+ L  L LG   L+ S+P  +F RL  L+ L L+ N+ L S+       
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ-LQSI------- 146

Query: 227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285
            P    D                L+ L  L LS N            L +L+ + L  N
Sbjct: 147 -PAGAFD---------------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 39/86 (45%)

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
           L   T ++L  N+ Q     V   L  L  L  ++N+L  L     ++LTQL+ L L  N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 783 KVAGEIPWQLTSLNFLQVLNLSQNQL 808
           ++          L  L+ L L+ NQL
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQL 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 338 TIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN 397
           ++PSG+      E +DL++  L      +   L  L  L+L  N L   +   +F +L  
Sbjct: 28  SVPSGIPAD--TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 398 LLGLDLSHNSLSLSTLLP--VNSSFPYLSMLSLSSCNISEFP----DFLRTQHRLQILDL 451
           L  L L++N L     LP  V      L  L L    +   P    D L T+  L+ L L
Sbjct: 85  LGTLGLANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TK--LKELRL 138

Query: 452 SDNQIRGGIPNWIWNVGKDT-LNHLNLSHNFLTGIELLPW---KNLRYLDLRSN 501
           + NQ++  IP   ++  K T L  L+LS N L  +    +     L+ + L  N
Sbjct: 139 NTNQLQ-SIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             +DL               L  L  LN  +N+L  L     ++LT+L +L L++N++A 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 787 EIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
                   L  L  L L  NQL   +P G
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSG 125

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 17/97 (17%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
            T+ L+ N+       V   L  L  L    N+L  L     + LT+L+ L L++N    
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN---- 141

Query: 787 EIPWQLTS--------LNFLQVLNLSQNQLVGPIPQG 815
               QL S        L  LQ L+LS NQL   +P G
Sbjct: 142 ----QLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 48/217 (22%), Positives = 74/217 (34%), Gaps = 71/217 (32%)

Query: 280 LDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339
           LDL +          F  LT+L++L+   NQL                          T+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-------------------------QTL 74

Query: 340 PSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLL 399
            +G+F                        +L  L  L L++N L+ ++ L +F  L  L 
Sbjct: 75  SAGVF-----------------------DDLTELGTLGLANNQLA-SLPLGVFDHLTQLD 110

Query: 400 GLDLSHNSLSLSTLLP--VNSSFPYLSMLSLSSCNISEFP----DFLRTQHRLQILDLSD 453
            L L  N L     LP  V      L  L L++  +   P    D L     LQ L LS 
Sbjct: 111 KLYLGGNQL---KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT---NLQTLSLST 164

Query: 454 NQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW 490
           NQ++  +P+  ++     L  + L  N         +
Sbjct: 165 NQLQ-SVPHGAFDRLG-KLQTITLFGN--------QF 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 22/204 (10%)

Query: 188 NC---GLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIP 244
                  Q   P++ F         L     +T    +   +S  +   +   + + S+ 
Sbjct: 4   TVSTPIKQ-IFPDDAF--AETIKANLKKKS-VTDAVTQNELNSIDQI--IANNSDIKSVQ 57

Query: 245 ASLGNLSQLTYLDLSYNNFSGHIPSTLS---NLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
             +  L  + YL L  N         +S    L  L +L L+ N+       +F  LT L
Sbjct: 58  G-IQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLT 360
             L    NQL         +L +L  + L++N L  ++P G+F     L  +DL  NQL 
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 361 GSISNSI-SELVNLIDLSLSSNNL 383
            S+   +  +L  L DL L  N L
Sbjct: 171 -SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 62/285 (21%), Positives = 91/285 (31%), Gaps = 97/285 (34%)

Query: 55  TGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS 114
              +L    +     + + L S+  +   N      +      G    PN+ +L L    
Sbjct: 22  IKANLKKKSV-TDAVTQNELNSIDQIIANN------SDIKSVQGIQYLPNVRYLAL---- 70

Query: 115 FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF 174
                                                   N+L ++            + 
Sbjct: 71  --------------------------------------GGNKLHDI-----------SAL 81

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD 233
              L++LT L L    LQ S+P  +F +L NL+ L+L  N+ L S+   V          
Sbjct: 82  -KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQ-LQSLPDGV---------- 128

Query: 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC 293
                           L+ LTYL+L++N            L  L  LDLS N+       
Sbjct: 129 -------------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175

Query: 294 IFANLTQLSFLDFSNNQLNGPISSSV-----SRLHSLVTIYLSYN 333
           +F  LTQL  L    NQL      SV      RL SL  I+L  N
Sbjct: 176 VFDKLTQLKDLRLYQNQLK-----SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 33/198 (16%)

Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383
             +   L   S+   +      S  ++ I   N+ +       I  L N+  L+L  N L
Sbjct: 20  ETIKANLKKKSVTDAVTQNELNS--IDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKL 75

Query: 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYLSMLSLSSCNISEFP---- 437
               ++    EL NL  L L+ N L     LP         L  L L    +   P    
Sbjct: 76  H---DISALKELTNLTYLILTGNQL---QSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 438 DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDT-LNHLNLSHNFLTGIELLPWK----- 491
           D L     L  L+L+ NQ++  +P  +++  K T L  L+LS+N L     LP       
Sbjct: 130 DKLTN---LTYLNLAHNQLQ-SLPKGVFD--KLTNLTELDLSYNQLQS---LPEGVFDKL 180

Query: 492 -NLRYLDLRSNSLKGSIP 508
             L+ L L  N LK S+P
Sbjct: 181 TQLKDLRLYQNQLK-SVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 34/97 (35%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             + L  N+ Q     V  KL +L  LN +HN+L  L     + LT L  LDLS N    
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN---- 167

Query: 787 EIPWQLTS--------LNFLQVLNLSQNQLVGPIPQG 815
               QL S        L  L+ L L QNQL   +P G
Sbjct: 168 ----QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDG 199

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 16/90 (17%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T + L+GN+ Q     V  KL +LK L    N+L  L     + LT L  L+L+ N    
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN---- 143

Query: 787 EIPWQLTSLN---F-----LQVLNLSQNQL 808
               QL SL    F     L  L+LS NQL
Sbjct: 144 ----QLQSLPKGVFDKLTNLTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV-- 784
             + L GNK    I   + +L +L  L  + N+L  L     + LT L+ L L  N++  
Sbjct: 66  RYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123

Query: 785 --AGEIPWQLTSLNFLQVLNLSQNQL 808
              G +  +LT+   L  LNL+ NQL
Sbjct: 124 LPDG-VFDKLTN---LTYLNLAHNQL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 34/157 (21%)

Query: 252 QLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI--FANLTQLSFLDFSNN 309
           +   L          + +TLS L+  +HL LS N     I  I   + +  L  L    N
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILSLGRN 80

Query: 310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISE 369
            +       +  L ++                       LE + +  NQ+  S+S  I +
Sbjct: 81  LI-----KKIENLDAVA--------------------DTLEELWISYNQIA-SLSG-IEK 113

Query: 370 LVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
           LVNL  L +S+N ++   E+   A L  L  L L+ N
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 35/161 (21%)

Query: 177 NLSSLTSLDLGNCGLQ-GSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY 235
             +    ++L         +   +  L   ++L LS N  +  +                
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKI---------------- 63

Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI- 294
                    +SL  +  L  L L  N     I +  +    L  L +S N    QI  + 
Sbjct: 64  ---------SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN----QIASLS 109

Query: 295 -FANLTQLSFLDFSNNQLNGPIS-SSVSRLHSLVTIYLSYN 333
               L  L  L  SNN++        ++ L  L  + L+ N
Sbjct: 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 25/176 (14%)

Query: 325 LVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLS 384
            V ++     +   + + L T    + + L  N +   IS+ +S + NL  LSL  N + 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK 83

Query: 385 GNVELYMFAELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLSLSSCNISEFPDF--LR 441
               L   A    L  L +S+N ++ LS +         L +L +S+  I+ + +   L 
Sbjct: 84  KIENL--DAVADTLEELWISYNQIASLSGI----EKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 442 TQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLD 497
              +L+ L L+ N +             D   +   S   +  ++ LP  NL+ LD
Sbjct: 138 ALDKLEDLLLAGNPLY-----------NDYKENNATSEYRIEVVKRLP--NLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 18/143 (12%)

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           L+ L +   L L    ++  I  ++  + NL+ L L  N  +  +      +  L  + +
Sbjct: 44  LSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFS--GHIPSTLSNLQQLRHLDLSNNKFTGQI- 291
              N + S+ + +  L  L  L +S N  +  G I   L+ L +L  L L+ N       
Sbjct: 101 SY-NQIASL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYK 157

Query: 292 ---------PCIFANLTQLSFLD 305
                      +   L  L  LD
Sbjct: 158 ENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 9/143 (6%)

Query: 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSD 453
                  ++L      +  +    S+      L+LS+ NI +    L     L+IL L  
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGR 79

Query: 454 NQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-KNLRYLDLRSNSLK--GSIPFL 510
           N I+  I N         L  L +S+N +  +  +    NLR L + +N +   G I  L
Sbjct: 80  NLIK-KIENLDAVADT--LEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 511 P--PSLNFISVSNNKLSGEIPLS 531
                L  + ++ N L  +   +
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 15/134 (11%)

Query: 373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLSLSSC 431
            ++L      +         + LK    L LS N++  +S+L    S    L +LSL   
Sbjct: 27  KVELHGMIPPIEKMDAT--LSTLKACKHLALSTNNIEKISSL----SGMENLRILSLGRN 80

Query: 432 NISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE----L 487
            I +  +       L+ L +S NQI   +      V    L  L +S+N +T       L
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIA-SLSGIEKLV---NLRVLYMSNNKITNWGEIDKL 136

Query: 488 LPWKNLRYLDLRSN 501
                L  L L  N
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA- 785
             + L  N  + +I  +    ++L+ L  S+N++  L    +E L  L  L +S+NK+  
Sbjct: 73  RILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITN 129

Query: 786 -GEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQ 817
            GEI  +L +L+ L+ L L+ N L     +   
Sbjct: 130 WGEI-DKLAALDKLEDLLLAGNPLYNDYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 40/165 (24%), Positives = 53/165 (32%), Gaps = 51/165 (30%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS---VS 113
           L LS +     I   SSL  + +L+IL+L  N      I         L  L +S   ++
Sbjct: 53  LALSTNN----IEKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIA 106

Query: 114 SFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPS 173
           S SG     I  L  L  L +S N                +    E+             
Sbjct: 107 SLSG-----IEKLVNLRVLYMSNN---------------KITNWGEI------------D 134

Query: 174 FLTNLSSLTSLDLGNCGLQGSIPEN----------IFRLPNLQNL 208
            L  L  L  L L    L     EN          + RLPNL+ L
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN---K 783
           TTI  +   F+ R   V  +   ++ L+     +   +  +L  L   + L LS+N   K
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEK 62

Query: 784 VAGEIPWQLTSLNFLQVLNLSQNQL 808
           ++      L+ +  L++L+L +N +
Sbjct: 63  ISS-----LSGMENLRILSLGRNLI 82

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 32/187 (17%)

Query: 76  SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS---VSSFSGQIPAEISHLSKLVSL 132
                + + L         +    +      HL LS   +   S      +S +  L  L
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRIL 75

Query: 133 DLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQ 192
            L  N    ++   L A+   L EL  +  N +       S +  L +L  L + N  + 
Sbjct: 76  SLGRNLIKKIEN--LDAVADTLEELW-ISYNQI----ASLSGIEKLVNLRVLYMSNNKIT 128

Query: 193 --GSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNL 250
             G I + +  L  L++L+L+ N              PL                 +  L
Sbjct: 129 NWGEI-DKLAALDKLEDLLLAGN--------------PLYNDYKENNATSEYRIEVVKRL 173

Query: 251 SQLTYLD 257
             L  LD
Sbjct: 174 PNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 449 LDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-KNLRYLDLRSNSLK--G 505
           L      I   +   +  +      HL LS N +  I  L   +NLR L L  N +K   
Sbjct: 30  LHGMIPPIEK-MDATLSTLKA--CKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIE 86

Query: 506 SIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549
           ++  +  +L  + +S N+++    +    + ++  + +SNN + 
Sbjct: 87  NLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKIT 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
           NK L  + PK      +  + L G N    +P  L N   LT +DLS N  S     + S
Sbjct: 19  NKGLKVL-PK-GIPRDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV-----SRLHSLVT 327
           N+ QL  L LS N+     P  F  L  L  L    N +     S V     + L +L  
Sbjct: 76  NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-----SVVPEGAFNDLSALSH 130

Query: 328 IYLSYN 333
           + +  N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
           T L L  N F+  +P  LSN + L  +DLSNN+ +      F+N+TQL  L  S N+L  
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLF---TSPLLESIDLRNNQL 359
               +   L SL  + L  N ++  +P G F   ++  L  + +  N L
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA--LSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 18/97 (18%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T + L GN+F   +P+ +     L  ++ S+N+++ L   S  N+TQL +L LS N    
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN---- 88

Query: 787 EIPWQLTS--------LNFLQVLNLSQNQLVGPIPQG 815
               +L          L  L++L+L  N +   +P+G
Sbjct: 89  ----RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEG 120

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 29/130 (22%)

Query: 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNL 216
            EL L+    +  VP  L+N   LT +DL N  +  ++    F  +  L  LILSYN+ L
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR-L 90

Query: 217 TSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP-STLSNLQ 275
             + P+                F G        L  L  L L  N+ S  +P    ++L 
Sbjct: 91  RCIPPRT---------------FDG--------LKSLRLLSLHGNDISV-VPEGAFNDLS 126

Query: 276 QLRHLDLSNN 285
            L HL +  N
Sbjct: 127 ALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 329 YLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE 388
           YL  N     +P  L     L  IDL NN+++   + S S +  L+ L LS N L   + 
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIP 94

Query: 389 LYMFAELKNLLGLDLSHNSLS 409
              F  LK+L  L L  N +S
Sbjct: 95  PRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
               T IDLS N+      +    +  L  L  S+N+L  + P + + L  L  L L  N
Sbjct: 53  YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112

Query: 783 K 783
            
Sbjct: 113 D 113

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 7e-12
 Identities = 40/244 (16%), Positives = 83/244 (34%), Gaps = 14/244 (5%)

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
             L       +     T  +L   +LS  +    + + + +     L  L   + +    
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTV-LQSELESC--KELQELEPENKWCLLT 387

Query: 486 ELLPWKNLRYLDLRSNSLKGSIPFL---PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
            +L  + L  L     +L+         P    ++    +K   E  +     + +  ++
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 543 LSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLS 602
           L++  L  ++        +  LD+  N    ++P   +    L +L  +DN LE +V   
Sbjct: 448 LAHKDLT-VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-G 503

Query: 603 LVNCSFLEVLDVGNNRINGTFPA--WLGALSELQVLILRSNRFHGPITYSVT-RFPFPKL 659
           + N   L+ L + NNR+     A   L +   L +L L+ N                P +
Sbjct: 504 VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

Query: 660 RILD 663
             + 
Sbjct: 563 SSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 2e-11
 Identities = 56/351 (15%), Positives = 98/351 (27%), Gaps = 47/351 (13%)

Query: 160 LVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSV 219
           L+  +          ++   +  S+        GS    +  + +   L + +       
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 220 FPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRH 279
            P   W   L    L       +               L  +          +  +QL  
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSATDEQLFR 353

Query: 280 LDLSNNKFTGQIPCI--FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNG 337
            +LS  K T     +     L +L   +         +  ++  L         +++L  
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 338 TIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN 397
             P        L S  L  N +         E  ++  L L+  +L+    L    +L  
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVL------KMEYADVRVLHLAHKDLT---VLCHLEQLLL 464

Query: 398 LLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIR 457
           +  LDLSHN                          +   P  L     L++L  SDN + 
Sbjct: 465 VTHLDLSHN-------------------------RLRALPPALAALRCLEVLQASDNALE 499

Query: 458 GGIPNWIWNVGK-DTLNHLNLSHNFLTGIELLPW----KNLRYLDLRSNSL 503
                 +  V     L  L L +N L     +        L  L+L+ NSL
Sbjct: 500 N-----VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 45/264 (17%), Positives = 84/264 (31%), Gaps = 17/264 (6%)

Query: 554 PCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE----GSVPLSLVNCSFL 609
                S +W  D+   + +  +PQ   +       +  +  L                 L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 610 EVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSN-NE 668
              ++   +      + L +  ELQ L   +      I   +            L   + 
Sbjct: 352 FRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 410

Query: 669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY--YSAILTVKGVNMEMEKVLNIF 726
              V P R              ++     Y +    +  +  +  +  +       L + 
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ-----LLLV 465

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T +DLS N+ +  +P  +  L  L+ L  S N L  +    + NL +L+ L L +N++  
Sbjct: 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQ 522

Query: 787 -EIPWQLTSLNFLQVLNLSQNQLV 809
                 L S   L +LNL  N L 
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 40/302 (13%), Positives = 73/302 (24%), Gaps = 19/302 (6%)

Query: 376 LSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE 435
           L  +  +           E    +         S    L +      LS+   +    + 
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 436 FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW-KNLR 494
                        L+    Q        IW         + L              + L 
Sbjct: 296 PSHVWLCDLPAASLNDQLPQH---TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP 554
             +L           L        +        + +     +    +             
Sbjct: 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 555 CLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDV 614
            +      +LD   + F         + + + +L+L    L  +V   L     +  LD+
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDL 470

Query: 615 GNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFP----FPKLRILDLSNNEFT 670
            +NR+    P  L AL  L+VL    N         +         P+L+ L L NN   
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNA--------LENVDGVANLPRLQELLLCNNRLQ 521

Query: 671 GV 672
             
Sbjct: 522 QS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 35/142 (24%)

Query: 73  SLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSL 132
                  +++L+LA  D   + +     +   + HL+LS +     +P  ++ L  L  L
Sbjct: 436 LKMEYADVRVLHLAHKDL--TVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 133 DLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQ 192
             S N                L  +                 + NL  L  L L N  LQ
Sbjct: 492 QASDN---------------ALENVDG---------------VANLPRLQELLLCNNRLQ 521

Query: 193 G-SIPENIFRLPNLQNLILSYN 213
             +  + +   P L  L L  N
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGN 543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 66.3 bits (161), Expect = 1e-11
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 28/127 (22%)

Query: 237 CNFMG--SIPASLGNLSQLTYLDLSYNNFSGHIPS-TLSNLQQLRHLDLSNNKFTGQIPC 293
           C   G       L     LT L +       H+    L  L +LR+L +  +      P 
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 294 IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESID 353
            F    +LS L+                        LS+N+L  ++         L+ + 
Sbjct: 75  AFHFTPRLSRLN------------------------LSFNALE-SLSWKTVQGLSLQELV 109

Query: 354 LRNNQLT 360
           L  N L 
Sbjct: 110 LSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 24/119 (20%)

Query: 194 SIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL 253
               ++    NL  L +   ++L  +                           L  L +L
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHL-----------------------ELRDLRGLGEL 58

Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
             L +  +      P       +L  L+LS N            L+ L  L  S N L+
Sbjct: 59  RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 119 IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNL 178
               +     L  L +     L     +    ++ L EL+ L +    + +  P      
Sbjct: 23  SLHHLPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 179 SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYN 213
             L+ L+L    L+ S+     +  +LQ L+LS N
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 26/120 (21%)

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSVFPKVNWSSP 228
           +    L    +LT L + N      +     R L  L+NL +  +               
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-------------- 67

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
           LRF+           P +     +L+ L+LS+N        T+  L  L+ L LS N   
Sbjct: 68  LRFVA----------PDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 366 SISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN--SSFPYL 423
            +    NL +L + +     ++EL     L  L  L +  + L     +  +     P L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRL 82

Query: 424 SMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIR 457
           S L+LS   +            LQ L LS N + 
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 727 TTIDLSGNKFQGRIP-EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
           T + +   +    +    +  L  L+ L    + L  + P +     +L  L+LS N + 
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 786 GEIPWQLTSLNFLQVLNLSQNQLV 809
             + W+      LQ L LS N L 
Sbjct: 94  -SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 9e-07
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 10/115 (8%)

Query: 338 TIPSGLFTSPLLESIDLRNNQLTGSI-SNSISELVNLIDLSLSSNNLSGNVELYMFAELK 396
                L  +  L  + + N Q    +    +  L  L +L++  + L   V    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 397 NLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS------CNISEFPDFLRTQHR 445
            L  L+LS N  +L +L         L  L LS       C +     +      
Sbjct: 81  RLSRLNLSFN--ALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLG 133

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 26/173 (15%), Positives = 47/173 (27%), Gaps = 20/173 (11%)

Query: 432 NISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE----- 486
              +    L     L  L + + Q    +       G   L +L +  + L  +      
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFH 77

Query: 487 LLPWKNLRYLDLRSNSLKGSIP---FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL 543
             P   L  L+L  N+L+ S+        SL  + +S N L        C +  +     
Sbjct: 78  FTP--RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCS-----CALRWLQRWEE 129

Query: 544 SNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596
                                   M N    +P    +    ++   +D  L 
Sbjct: 130 EGLGGVPEQKLQCHG---QGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 322 LHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSS 380
             +L  +Y+        +          L ++ +  + L     ++      L  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 381 NNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL 414
           N L  ++       L +L  L LS N L  S  L
Sbjct: 90  NALE-SLSWKTVQGL-SLQELVLSGNPLHCSCAL 121

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 4/104 (3%)

Query: 568 MNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL-SLVNCSFLEVLDVGNNRINGTFPAW 626
             +              LT L + + Q    + L  L     L  L +  + +    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
                 L  L L  N      + S        L+ L LS N   
Sbjct: 76  FHFTPRLSRLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 764 IPYSLENLTQLESLDLSSNKVAGEIPWQ-LTSLNFLQVLNLSQNQL 808
             + L     L  L + + +    +  + L  L  L+ L + ++ L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 53  HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAHLNLS 111
           ++T L +   +    +     L  L  L+ L +  +     +++P  F   P L+ LNLS
Sbjct: 32  NLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS--GLRFVAPDAFHFTPRLSRLNLS 88

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNS 138
            ++    +  +      L  L LSGN 
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNP 114

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 271 LSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
            +N  + R LDL   K    I  + A L Q   +DFS+N++       +     L     
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLL----- 63

Query: 331 SYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELY 390
                             L+++ + NN++          L +L +L L++N+L    +L 
Sbjct: 64  ----------------RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 107

Query: 391 MFAELKNLLGLDLSHN 406
             A LK+L  L +  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 341 SGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLG 400
           +    +     +DLR  ++   I N  + L     +  S N +    +L  F  L+ L  
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKT 68

Query: 401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPD--FLRTQHRLQILDLSDNQI 456
           L +++N +       ++ + P L+ L L++ ++ E  D   L +   L  L +  N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 175 LTNLSSLTSLDLGNCGLQGSIPENIFR-LPNLQNLILSYNKNLTSV--FPKVNWSSPLRF 231
            TN      LDL    +   + EN+   L     +  S N+ +  +  FP +     L+ 
Sbjct: 15  YTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRR---LKT 68

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFS--GHIPSTLSNLQQLRHLDLSNNKFTG 289
           + +               L  LT L L+ N+    G +   L++L+ L +L +  N  T 
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTN 127

Query: 290 QI---PCIFANLTQLSFLDF 306
           +      +   + Q+  LDF
Sbjct: 128 KKHYRLYVIYKVPQVRVLDF 147

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             +DL G K    I  +   L+    ++FS N++  L       L +L++L +++N++  
Sbjct: 22  RELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICR 78

Query: 787 EIPWQLTSLNFLQVLNLSQNQL 808
                  +L  L  L L+ N L
Sbjct: 79  IGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVG--KLNSLKGLNFSHNKLTGLIPYSLENLTQLES 776
           +   L+ F  ID S N+    I ++ G   L  LK L  ++N++  +     + L  L  
Sbjct: 37  LGATLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 777 LDLSSNKVA--GEIPWQLTSLNFLQVLNLSQN 806
           L L++N +   G++   L SL  L  L + +N
Sbjct: 93  LILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 316 SSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLID 375
           ++  +       + L    +   I +   T    ++ID  +N++   +      L  L  
Sbjct: 12  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKT 68

Query: 376 LSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS-LSTLLPVNSSFPYLSMLSLSSCNIS 434
           L +++N +   +   +   L +L  L L++NSL  L  L P+ +S   L+ L +    ++
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVT 126

Query: 435 EFPDF 439
               +
Sbjct: 127 NKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGI 460
           + L+   +  +      ++      L L    I    +   T  +   +D SDN+IR  +
Sbjct: 2   VKLTAELIEQAAQY---TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 461 PNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLK--GSIPFLP--PS 513
             +        L  L +++N +  I         +L  L L +NSL   G +  L    S
Sbjct: 58  DGFPLLR---RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 514 LNFISVSNN 522
           L ++ +  N
Sbjct: 115 LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 37/138 (26%)

Query: 76  SLPHLQILNLAFNDFNYSYISP--GFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLD 133
           +L     ++ + N+     I    GF     L  L ++ +            L  L  L 
Sbjct: 40  TLDQFDAIDFSDNE-----IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94

Query: 134 LSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDL-GN--CG 190
           L+ N               +L EL +L              L +L SLT L +  N    
Sbjct: 95  LTNN---------------SLVELGDL------------DPLASLKSLTYLCILRNPVTN 127

Query: 191 LQGSIPENIFRLPNLQNL 208
            +      I+++P ++ L
Sbjct: 128 KKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLP--WKNLRYLDLRSNSLKG 505
           ++ L+   I         N  +     L+L    +  IE L         +D   N ++ 
Sbjct: 1   MVKLTAELIEQ-AAQ-YTNAVR--DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR- 55

Query: 506 SIPFLP--PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN 549
            +   P    L  + V+NN++          +  +  + L+NNSL 
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 3/140 (2%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
           S+PA  G  +    L L  N  +   P    +L  L+ L L +N+       +F +LTQL
Sbjct: 33  SVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG 361
           + LD   NQL    S+   RL  L  +++  N L   +P G+     L  + L  NQL  
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149

Query: 362 SISNSISELVNLIDLSLSSN 381
               +   L +L    L  N
Sbjct: 150 IPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 27/154 (17%)

Query: 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNL 216
           Q L L+   ++   P    +L +L  L LG+  L  ++P  +F  L  L  L L  N+ L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ-L 100

Query: 217 TSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ 276
           T +        P    D                L  L  L +  N  +  +P  +  L  
Sbjct: 101 TVL--------PSAVFD---------------RLVHLKELFMCCNKLTE-LPRGIERLTH 136

Query: 277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQ 310
           L HL L  N+        F  L+ L+      N 
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
           L     + L  N+       V   L  L  L+   N+LT L     + L  L+ L +  N
Sbjct: 63  LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122

Query: 783 KVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
           K+  E+P  +  L  L  L L QNQL   IP G
Sbjct: 123 KLT-ELPRGIERLTHLTHLALDQNQLKS-IPHG 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             + L  N+     P V   L +LK L    N+L  L     ++LTQL  LDL +N    
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN---- 98

Query: 787 EIPWQLTSLN---F-----LQVLNLSQNQLVGPIPQG 815
               QLT L    F     L+ L +  N+L   +P+G
Sbjct: 99  ----QLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRG 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 42/179 (23%), Positives = 54/179 (30%), Gaps = 55/179 (30%)

Query: 108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDM 167
           L L  +  +   P     L  L  L L                    N+L  L       
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGS------------------NQLGAL------- 79

Query: 168 SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKVNWS 226
              V   LT    LT LDLG   L   +P  +F RL +L+ L +  NK LT         
Sbjct: 80  PVGVFDSLTQ---LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNK-LT--------- 125

Query: 227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285
                           +P  +  L+ LT+L L  N            L  L H  L  N
Sbjct: 126 ---------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 254 TYLDLSYNNFSGHIPS-TLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312
           T L L+ N             L  L  L+L  N+ TG  P  F   + +  L    N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNN 357
              +     LH L T+ L  N ++  +  G F     L S++L +N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 35/148 (23%)

Query: 194 SIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL 253
            IP +I    +   L+L+ N+ L  +                            G L  L
Sbjct: 22  EIPRDIP--LHTTELLLNDNE-LGRISSD----------------------GLFGRLPHL 56

Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
             L+L  N  +G  P+       ++ L L  NK       +F  L QL  L+  +NQ+  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-- 114

Query: 314 PISSSVSR-----LHSLVTIYLSYNSLN 336
              S V       L+SL ++ L+ N  N
Sbjct: 115 ---SCVMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 727 TTIDLSGNKFQGRIPE-VVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
           T + L+ N+      + + G+L  L  L    N+LTG+ P + E  + ++ L L  N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN--- 88

Query: 786 GEIPWQLTSLN---F-----LQVLNLSQNQLVGPIPQG 815
                ++  ++   F     L+ LNL  NQ+   +  G
Sbjct: 89  -----KIKEISNKMFLGLHQLKTLNLYDNQISC-VMPG 120

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 328 IYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
           + L+ N L      GLF   P L  ++L+ NQLTG   N+     ++ +L L  N +   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 387 VELYMFAELKNLLGLDLSHNSLS 409
           +   MF  L  L  L+L  N +S
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 27/130 (20%)

Query: 158 QELVLNSVDMSY-EVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKN 215
            EL+LN  ++           L  L  L+L    L   I  N F    ++Q L L  NK 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK- 89

Query: 216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQ 275
           +  +  K+               F+G        L QL  L+L  N  S  +P +  +L 
Sbjct: 90  IKEISNKM---------------FLG--------LHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 276 QLRHLDLSNN 285
            L  L+L++N
Sbjct: 127 SLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 16/92 (17%)

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
           L     ++L  N+  G  P      + ++ L    NK+  +       L QL++L+L  N
Sbjct: 53  LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112

Query: 783 KVAGEIPWQLTS--------LNFLQVLNLSQN 806
                   Q++         LN L  LNL+ N
Sbjct: 113 --------QISCVMPGSFEHLNSLTSLNLASN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 27/138 (19%)

Query: 273 NLQQLRHLDLSNNKFT-GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLS 331
               +R L L N K   G+I  + A    L FL   N  L      SVS L  L      
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKL------ 70

Query: 332 YNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYM 391
                          P L+ ++L  N++ G +     +L NL  L+LS N L     L  
Sbjct: 71  ---------------PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 392 FAELKNLLGLDLSHNSLS 409
             +L+ L  LDL +  ++
Sbjct: 116 LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 27/159 (16%)

Query: 349 LESIDLRNNQLT-GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS 407
           +  + L N +   G I    +E VNL  LSL +  L     +    +L  L  L+LS N 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENR 82

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNISEFPD--FLRTQHRLQILDLSDNQIRGGIPNWIW 465
           +    L  +    P L+ L+LS   + +      L+    L+ LDL + ++         
Sbjct: 83  IF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-------- 133

Query: 466 NVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLK 504
                     NL+    +  +LLP   L YLD      +
Sbjct: 134 ----------NLNDYRESVFKLLP--QLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 711 TVKGVNMEMEKVLNIF---------TTIDLSGNKFQ-GRIPEVVGKLNSLKGLNFSHNKL 760
           +     M+M++ +++            + L   K   G+I  +  +  +L+ L+  +  L
Sbjct: 2   SSGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL 61

Query: 761 TGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
             +    L  L +L+ L+LS N++ G +      L  L  LNLS N+L
Sbjct: 62  ISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 19/145 (13%)

Query: 361 GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSF 420
           GS  +S  ++   I L L +   +   EL           LD   ++     +  + + F
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVRELV----------LDNCKSNDG--KIEGLTAEF 48

Query: 421 PYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN 480
             L  LSL +  +      L    +L+ L+LS+N+I GG+      +    L HLNLS N
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN--LTHLNLSGN 105

Query: 481 FLTGIE----LLPWKNLRYLDLRSN 501
            L  I     L   + L+ LDL + 
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 30/138 (21%)

Query: 177 NLSSLTSLDLGNCGLQ-GSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY 235
             +++  L L NC    G I        NL+ L L     L SV                
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV---------------- 64

Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT--GQIPC 293
                    ++L  L +L  L+LS N   G +      L  L HL+LS NK      +  
Sbjct: 65  ---------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 294 IFANLTQLSFLDFSNNQL 311
           +   L  L  LD  N ++
Sbjct: 116 L-KKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
           D    N  G I         L +L L        + S L  L +L+ L+LS N+  G + 
Sbjct: 32  DNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLD 88

Query: 293 CIFANLTQLSFLDFSNNQLNGPIS-SSVSRLHSLVTIYLSYN 333
            +   L  L+ L+ S N+L    +   + +L  L ++ L   
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
              + L        +   + KL  LK L  S N++ G +    E L  L  L+LS NK+ 
Sbjct: 51  LEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 786 --GEIPWQLTSLNFLQVLNLSQNQLV 809
               +   L  L  L+ L+L   ++ 
Sbjct: 109 DISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 32/136 (23%), Positives = 42/136 (30%), Gaps = 33/136 (24%)

Query: 76  SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS 135
              +L+ L+L         +S    + P L  L LS +   G +      L  L  L+LS
Sbjct: 47  EFVNLEFLSLINVGL--ISVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGN---CGLQ 192
           GN                L ++  L              L  L  L SLDL N     L 
Sbjct: 104 GN---------------KLKDISTL------------EPLKKLECLKSLDLFNCEVTNLN 136

Query: 193 GSIPENIFRLPNLQNL 208
                    LP L  L
Sbjct: 137 DYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 25/92 (27%)

Query: 579 FSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL 638
             K  +L  L L++N++ G + +       L  L++  N++          +S L+ L  
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--------ISTLEPL-- 116

Query: 639 RSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
                               L+ LDL N E T
Sbjct: 117 ---------------KKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 35/166 (21%)

Query: 126 LSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLD 185
            + +  L L        +   ++ L      L+ L L +V +     S L  L  L  L+
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLE 77

Query: 186 LGNCGLQGSIPENIFRLPNLQNLILSYNK--NLTSVFPKVNWSSPLRFMDLYGCNFMGSI 243
           L    + G +     +LPNL +L LS NK  +++++ P                      
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP---------------------- 115

Query: 244 PASLGNLSQLTYLDLSYN---NFSGHIPSTLSNLQQLRHLDLSNNK 286
              L  L  L  LDL      N + +  S    L QL +LD  + +
Sbjct: 116 ---LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 59.6 bits (143), Expect = 2e-09
 Identities = 42/283 (14%), Positives = 87/283 (30%), Gaps = 32/283 (11%)

Query: 27  YSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLA 86
             K+I+ K +K            M        LS       +     +     L  L   
Sbjct: 53  AGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQI 112

Query: 87  FNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPV 146
                             +       + F G    +I    + +S       +    +PV
Sbjct: 113 TIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEIS-----WIEQVDLSPV 167

Query: 147 LKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF--RLPN 204
           L A+         L    +  +  +        +L SL++ + GL  S+ E+I    LPN
Sbjct: 168 LDAMPL-------LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220

Query: 205 LQNLILSYNKN----------LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN---LS 251
           L+ L+L                  +F K  + + L+++ +        +         L 
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 252 QLTYLDLSYNNFSG----HIPSTLSNLQQLRHLDLSNNKFTGQ 290
           QL  +D+S    +      +   +  ++ L+ +++  N  + +
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.2 bits (129), Expect = 1e-07
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 32/197 (16%)

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
                 +   L  +  L  L +   N          NL   + L++ +      +     
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNL---KSLEIISGGLPDSVVEDIL 214

Query: 297 --NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDL 354
             +L  L  L       +      ++    L     S +             P L+ + +
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL----FSKDRF-----------PNLKWLGI 259

Query: 355 RNNQLTGSISNSISE---LVNLIDLSLSSNNLS---GNVELYMFAELKNLLGLDLSHNSL 408
            + +    +     E   L  L  + +S+  L+     + L    ++K+L  +++ +N L
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

Query: 409 S------LSTLLPVNSS 419
           S      L   LP+   
Sbjct: 320 SDEMKKELQKSLPMKID 336

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.1 bits (121), Expect = 1e-06
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 22/185 (11%)

Query: 192 QGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLG--N 249
           Q  +   +  +P L NL +    NL+    K      L+ +++       S+   +   +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLS--IGKKP-RPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQ---------QLRHLDLSNNKFTGQIPCIFAN--- 297
           L  L  L L            ++  +          L+ L + + +    +  +F     
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 298 LTQLSFLDFSNNQLNG----PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESID 353
           L QL  +D S   L       +   V ++  L  I + YN L+  +   L    L   ID
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL-QKSLPMKID 336

Query: 354 LRNNQ 358
           + ++Q
Sbjct: 337 VSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 1e-05
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 336 NGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN-VELYMFAE 394
              +   L   PLL ++ ++      ++S       NL  L + S  L  + VE  + ++
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 395 LKNLLGLDLSHNS------LSLSTLLPV--NSSFPYLSMLSLSSCNIS-EFPDFL---RT 442
           L NL  L L            ++   P+     FP L  L +          +       
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 443 QHRLQILDLSDNQIRGGIPNWIWNVGKD--TLNHLNLSHNFLT--GIELL 488
             +L+ +D+S   +       + +       L  +N+ +N+L+    + L
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 29/190 (15%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 290 QIPCIFANLTQLSFLDFSNNQLN------GPISSSVSRLHSLVTIYLSYNSLNGTIPSGL 343
           +    FA+   L + D    +          +S  +  +  L  + +        +  G 
Sbjct: 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK---GTNNLSIGK 189

Query: 344 FTSPLLESIDLRNNQLTGSISNSI--SELVNL--IDLSLSSNNLSGNVELYMFAEL---- 395
              P L+S+++ +  L  S+   I  S+L NL  + L +   +   + ++ +F  L    
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 396 --KNLLGLDLSHNSLS--LSTLLPVNSSFPYLSMLSLSSCNIS-----EFPDFLRTQHRL 446
              NL  L +        +  +   +   P L  + +S+  ++        D +     L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 447 QILDLSDNQI 456
           + +++  N +
Sbjct: 310 KFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 27/188 (14%), Positives = 74/188 (39%), Gaps = 21/188 (11%)

Query: 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686
           L A+  L  L ++          S+ + P P L+ L++ +               + ++ 
Sbjct: 168 LDAMPLLNNLKIKGTN-----NLSIGKKPRPNLKSLEIISGGLPD-------SVVEDILG 215

Query: 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGK 746
            +  + E   +Y+   +  +   + V       ++  N    + +   + Q  + E+  +
Sbjct: 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLE 274

Query: 747 ---LNSLKGLNFSHNKLTG----LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQ 799
              L  L+ ++ S   LT     L+   ++ +  L+ +++  N ++ E+  +L   +   
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK-SLPM 333

Query: 800 VLNLSQNQ 807
            +++S +Q
Sbjct: 334 KIDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 5e-05
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFA-ELKNLLGLDLSHNS 407
              ID    +++      +S +++ +   L++  + G   L +      NL  L++    
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGG 204

Query: 408 LSLSTLLPV-NSSFPYLSMLSLS--------SCNISEFPDFLRTQH--RLQILDLSDNQI 456
           L  S +  +  S  P L  L L           +++ F           L+ L + D + 
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264

Query: 457 RGGIPNWIWNVGK-DTLNHLNLSHNFLT--GIELL-----PWKNLRYLDLRSNSL 503
           +  +            L  +++S   LT  G  LL       K+L++++++ N L
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
           S+P   G  +Q TYLDL  N+           L  L  L L  NK       +F  LT L
Sbjct: 21  SVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLT 360
           ++L+ S NQL    +    +L  L  + L+ N L  ++P G+F     L+ + L  NQL 
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137

Query: 361 GSISNSISELVNLIDLSLSSN 381
                    L +L  + L  N
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 44/155 (28%), Positives = 55/155 (35%), Gaps = 24/155 (15%)

Query: 179 SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCN 238
           +  T LDL    L+         L +L  L L  NK L S+   V               
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGV--------------- 71

Query: 239 FMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
                      L+ LTYL+LS N            L QL+ L L+ N+       +F  L
Sbjct: 72  --------FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123

Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
           TQL  L    NQL         RL SL  I+L  N
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 38/101 (37%), Positives = 46/101 (45%), Gaps = 17/101 (16%)

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
           L   T + L GNK Q     V  KL SL  LN S N+L  L     + LTQL+ L L++N
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110

Query: 783 KVAGEIPWQLTS--------LNFLQVLNLSQNQLVGPIPQG 815
                   QL S        L  L+ L L QNQL   +P G
Sbjct: 111 --------QLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDG 142

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 16/90 (17%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T +DL  N  +     V  +L SL  L    NKL  L       LT L  L+LS+N    
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN---- 86

Query: 787 EIPWQLTSLN---F-----LQVLNLSQNQL 808
               QL SL    F     L+ L L+ NQL
Sbjct: 87  ----QLQSLPNGVFDKLTQLKELALNTNQL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDM 167
           L+L  +S           L+ L  L L GN    L   V   L      L  L L++  +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT----SLTYLNLSTNQL 88

Query: 168 SYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSV 219
                     L+ L  L L    LQ S+P+ +F +L  L++L L  N+ L SV
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ-LKSV 139

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 25/158 (15%)

Query: 339 IPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNL 398
           +P+G+        +DL  N L    +    EL +L  L L  N L  ++   +F +L +L
Sbjct: 22  VPTGIPAQ--TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 399 LGLDLSHNSLSLSTLLP--VNSSFPYLSMLSLSSCNISEFPD--FLR-TQHRLQILDLSD 453
             L+LS N L     LP  V      L  L+L++  +   PD  F + TQ  L+ L L  
Sbjct: 79  TYLNLSTNQL---QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ--LKDLRLYQ 133

Query: 454 NQIRGGIPNWIW-NVGKDTLNHLNLSHNFLTGIELLPW 490
           NQ++  +P+ ++  +    L ++ L  N        PW
Sbjct: 134 NQLK-SVPDGVFDRLTS--LQYIWLHDN--------PW 160

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 47/293 (16%), Positives = 93/293 (31%), Gaps = 52/293 (17%)

Query: 248 GNLSQLTYLDLSYNNF-SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA-----NLTQL 301
             L     LD  + ++   +   +   L  LR L+L+  + T     + A         L
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHAL 103

Query: 302 SFLDFSNNQLNG----PISSSVSRLHSLVTIYLSYNSLNGT----IPSGL-FTSPLLESI 352
             ++ ++ QL+      +     R   L    L  NSL       +   L      + ++
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 353 DLRNNQLTGS----ISNSISELVNLIDLSLSSNNLSGNVELYMFAEL----KNLLGLDLS 404
            L NN LT +    +   ++   ++  LSL    L G+  L + A      + L  L+++
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNVA 219

Query: 405 HNSL------SLSTLLPVNSSFPYLSMLSLSSCNIS--------EFPDFLRTQHRLQILD 450
           +N        +L+     + S   L +L L    +S        +         R+ +  
Sbjct: 220 YNGAGDTAALALARAAREHPS---LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276

Query: 451 LSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503
                +               L+ +  + N      +     L   DL  +  
Sbjct: 277 TEGTAVS--------EYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRG 321

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 54/359 (15%), Positives = 99/359 (27%), Gaps = 65/359 (18%)

Query: 283 SNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG 342
            N     Q+ C   NL  L        +L       +     L  ++  Y   N    + 
Sbjct: 10  HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAE 69

Query: 343 LFTSPLLESIDLRNNQLTGSISNSISELV-----NLIDLSLSSNNLSGNVELYMFAELKN 397
           + +S  L  ++L   ++T      ++ ++      L +++L+S  L       +      
Sbjct: 70  VLSS--LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 398 LLGLDLSHNSLS------LSTLLPVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRL 446
              L L  NSL       L  LL  +     ++ L LS+  ++        + L     +
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQC--QITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 447 QILDLSDNQIR--GGI-------PNWIWNVGKDTLNHLNLSHNFLT--GIELLPW----- 490
             L L    +   G          N         L  LN+++N         L       
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRN-------RQLQELNVAYNGAGDTAALALARAAREH 238

Query: 491 KNLRYLDLRSNSLK----------GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
            +L  L L  N L           G        +         +S    +          
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE------ 292

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR----LTILNLNDNQL 595
           V  + NS +        +  L   D+  +      P   ++  R    +  L       
Sbjct: 293 VQRNLNSWDRAR--VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 50/316 (15%), Positives = 92/316 (29%), Gaps = 74/316 (23%)

Query: 178 LSSLTSLDLGNCGLQGSIPENIFRL--------PNLQNLILSYNKNLTSVFPKVNWSSPL 229
           LSSL  L+L    +    P     +          L  + L+    L             
Sbjct: 71  LSSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASC-QLDPA---------- 116

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFS----GHIPSTL-SNLQQLRHLDLSN 284
                 G   +  +        +   L L  N+        +   L  +  Q+  L LSN
Sbjct: 117 ------GLRTLLPV------FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSN 164

Query: 285 NKFTGQ-IPCIFANL---TQLSFLDFSNNQLNGP----ISSSVSRLHSLVTIYLSYNSLN 336
           N  T   +  +   L   T ++ L   +  L       +++ + R   L  + ++YN   
Sbjct: 165 NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

Query: 337 GT----IPSGLFTSPLLESIDLRNNQLTGSISNSISELVNL------IDLSLSSNNLSGN 386
            T    +       P LE + L  N+L+      + +L         + +SL+       
Sbjct: 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284

Query: 387 VELYMFAE-LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-----DFL 440
               + +E  +NL   D +     L            L +  L     +          L
Sbjct: 285 YWSVILSEVQRNLNSWDRARVQRHLE-----------LLLRDLEDSRGATLNPWRKAQLL 333

Query: 441 RTQHRLQILDLSDNQI 456
           R +  ++ L       
Sbjct: 334 RVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 46/339 (13%), Positives = 98/339 (28%), Gaps = 75/339 (22%)

Query: 104 NLAHLNLSVSSFSGQIPAEISHLSK--------LVSLDLSGNSQLGLDTPVLKALVQNLN 155
           +L  LNL+    +   P + + ++         L  ++L+      LD   L+ L+    
Sbjct: 73  SLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQ---LDPAGLRTLLPVFL 126

Query: 156 ELQELVLNSVDMSYEVPSFL-----TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLIL 210
             ++L L    +  E    L      +   +T+L L N  L  +    +          L
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-------GL 179

Query: 211 SYNKNLTSVFPKVNWSSPLRFMDLYGCNF----MGSIPASLGNLSQLTYLDLSYNNFSG- 265
           + N ++T +              L         +  + A L    QL  L+++YN     
Sbjct: 180 AGNTSVTHL-------------SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226

Query: 266 ---HIPSTLSNLQQLRHLDLSNNKFT-------GQIPCIFANLTQLSFLDFSNNQLN--- 312
               +         L  L L  N+ +         +        ++         ++   
Sbjct: 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286

Query: 313 -GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISEL- 370
              +S     L+S     +  +               L   DL +++         ++L 
Sbjct: 287 SVILSEVQRNLNSWDRARVQRH-------------LELLLRDLEDSRGATLNPWRKAQLL 333

Query: 371 -VN--LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
            V   +  L     +       +   + +   G    H+
Sbjct: 334 RVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHHHH 372

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 42/220 (19%), Positives = 69/220 (31%), Gaps = 60/220 (27%)

Query: 471 TLNHLNLSHNFLT--GIELL------PWKNLRYLDLRSNSL--KGSIPFLP--PSLNFIS 518
           +L  LNL+   +T     ++          L  ++L S  L   G    LP       + 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 519 VSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQT 578
           +  N L  E      ++       L ++              +  L +  N    +    
Sbjct: 133 LQLNSLGPEACKDLRDL-------LLHD-----------QCQITTLRLSNNPLTAAGVAV 174

Query: 579 FSKG----SRLTILNLNDNQL--EGSVPLS--LVNCSFLEVLDVGNNRINGTFPAWLGAL 630
             +G    + +T L+L    L  EG   L+  L     L+ L+V  N   G   A   AL
Sbjct: 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAAL--AL 231

Query: 631 SELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
           +       R +               P L +L L  NE +
Sbjct: 232 AR----AAREH---------------PSLELLHLYFNELS 252

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 27/135 (20%)

Query: 273 NLQQLRHLDLSNNKFT-GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLS 331
               ++ L L N++   G++  +     +L FL   N  L     +S++ L  L      
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKL------ 63

Query: 332 YNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYM 391
                            L+ ++L +N+++G +     +  NL  L+LS N +     +  
Sbjct: 64  ---------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 392 FAELKNLLGLDLSHN 406
             +L+NL  LDL + 
Sbjct: 109 LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 32/135 (23%), Positives = 42/135 (31%), Gaps = 28/135 (20%)

Query: 177 NLSSLTSLDLGNCGLQ-GSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY 235
             S +  L L N     G +         L+ L       LTS+                
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---------------- 57

Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCI 294
                    A+L  L++L  L+LS N  SG +         L HL+LS NK         
Sbjct: 58  ---------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 295 FANLTQLSFLDFSNN 309
              L  L  LD  N 
Sbjct: 109 LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSD 453
              ++  L L ++  +   L  +   F  L  LS  +  ++   + L   ++L+ L+LSD
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSD 73

Query: 454 NQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE----LLPWKNLRYLDLRSN 501
           N++ GG+           L HLNLS N +  +     L   +NL+ LDL + 
Sbjct: 74  NRVSGGLEVLAEKCPN--LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 717 MEMEKVLNI---------FTTIDLSGNKFQ-GRIPEVVGKLNSLKGLNFSHNKLTGLIPY 766
           MEM + +++            + L  ++   G++  +  +   L+ L+  +  LT +   
Sbjct: 1   MEMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A 58

Query: 767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808
           +L  L +L+ L+LS N+V+G +         L  LNLS N++
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 227 SPLRFMDLYGC-NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN 285
           S ++ + L    +  G +        +L +L       +  I + L  L +L+ L+LS+N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDN 74

Query: 286 KFTGQIPCIFANLTQLSFLDFSNNQLNGPIS-SSVSRLHSLVTIYLSYN 333
           + +G +  +      L+ L+ S N++    +   + +L +L ++ L   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 713 KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT 772
           +G    +         +          I   + KLN LK L  S N+++G +    E   
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 773 QLESLDLSSNKVAG-EIPWQLTSLNFLQVLNLSQN 806
            L  L+LS NK+        L  L  L+ L+L   
Sbjct: 89  NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 17/136 (12%)

Query: 372 NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL-SLSTLLPVNSSFPYLSMLSLSS 430
           ++ +L L ++  +      +  E + L  L   +  L S++ L         L  L LS 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL----PKLNKLKKLELSD 73

Query: 431 CNISEFPDFLRTQ-HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG----- 484
             +S   + L  +   L  L+LS N+I+  +         + L  L+L +  +T      
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 485 ---IELLPWKNLRYLD 497
               +LLP   L YLD
Sbjct: 133 ENVFKLLP--QLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 27/111 (24%)

Query: 560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI 619
            L FL   +N    SI     K ++L  L L+DN++ G + +    C  L  L++  N+I
Sbjct: 43  ELEFLST-INVGLTSIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 620 NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
                     LS ++ L                      L+ LDL N E T
Sbjct: 101 KD--------LSTIEPL-----------------KKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIR--GGIPNWIWNVGKDTLNHLNLSHNFLT 483
           L  S  N  +          L+ L   +  +     +P          L  L LS N ++
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK------LKKLELSDNRVS 77

Query: 484 GIELLPW---KNLRYLDLRSNSLK 504
           G   +      NL +L+L  N +K
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIK 101

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 243 IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLS 302
           IP+S       T L+L  N            L QL  L LS N+       +F  LT+L+
Sbjct: 26  IPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79

Query: 303 FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQ 358
            L    N+L    +    +L  L  + L  N L  ++P G+F     L+ I L  N 
Sbjct: 80  ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 17/97 (17%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T ++L  NK Q     V  KL  L  L+ S N++  L     + LT+L  L L  N    
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN---- 86

Query: 787 EIPWQLTS--------LNFLQVLNLSQNQLVGPIPQG 815
               +L S        L  L+ L L  NQL   +P G
Sbjct: 87  ----KLQSLPNGVFDKLTQLKELALDTNQLKS-VPDG 118

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 44/160 (27%), Positives = 57/160 (35%), Gaps = 58/160 (36%)

Query: 179 SSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTS----VFPKVNWSSPLRFMD 233
           SS T L+L +  LQ S+P  +F +L  L  L LS N+ + S    VF K           
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK----------- 74

Query: 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC 293
                           L++LT L L  N              +L+ L             
Sbjct: 75  ----------------LTKLTILYLHEN--------------KLQSLP----------NG 94

Query: 294 IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
           +F  LTQL  L    NQL         RL SL  I+L  N
Sbjct: 95  VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
           S+P   G  +    L L  N  +   P     L QL  LDL NN+ T     +F  LTQL
Sbjct: 23  SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
           + L  ++NQL      +   L SL  I+L  N
Sbjct: 81  TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 20/97 (20%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           TT+D SG      +P   G   + + L    N++T L P   + LTQL  LDL +N    
Sbjct: 12  TTVDCSGKSLAS-VP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN---- 64

Query: 787 EIPWQLTS--------LNFLQVLNLSQNQLVGPIPQG 815
               QLT         L  L  L+L+ NQL   IP+G
Sbjct: 65  ----QLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRG 96

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
           S+PA  G  +    L L+ N  +   P    +L  L+ L  ++NK T     +F  LTQL
Sbjct: 26  SVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83

Query: 302 SFLDFSNNQLNGPISSSV-----SRLHSLVTIYLSYN 333
           + LD ++N L      S+       L SL  IYL  N
Sbjct: 84  TQLDLNDNHL-----KSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 20/97 (20%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           T ++    +    +P   G     + L  ++N++T L P   ++L  L+ L  +SN    
Sbjct: 15  TLVNCQNIRLAS-VP--AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN---- 67

Query: 787 EIPWQLTS--------LNFLQVLNLSQNQLVGPIPQG 815
               +LT+        L  L  L+L+ N L   IP+G
Sbjct: 68  ----KLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRG 99

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 9e-08
 Identities = 84/535 (15%), Positives = 156/535 (29%), Gaps = 173/535 (32%)

Query: 184 LDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSI 243
           L+L NC    + PE +  L  LQ L+   + N TS                   +   +I
Sbjct: 187 LNLKNC----NSPETV--LEMLQKLLYQIDPNWTS-----------------RSDHSSNI 223

Query: 244 PASLGNLSQ-LTYL--DLSYNNFSGHIPS--TLSNLQQLRHLDLSNNKFTGQIPC-IFAN 297
              + ++   L  L     Y N          L N+Q  +  +     F     C I   
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN------CLLVLLNVQNAKAWN----AFNLS--CKILL- 270

Query: 298 LTQLSFLDFSN-NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESI-DLR 355
            T+         + L+   ++ +S  H  +T+              L    L     DL 
Sbjct: 271 TTR----FKQVTDFLSAATTTHISLDHHSMTLTPD-EVK------SLLLKYLDCRPQDLP 319

Query: 356 NNQLTGS------ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409
              LT +      I+ SI + +   D          N +     +L  ++         S
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWD----------NWKHVNCDKLTTII-------ESS 362

Query: 410 LSTLLPVNSSFPYLSMLSLSSCNISEFPDFLR-TQHRLQILDLSDNQIRGGIPNWIWNVG 468
           L+ L P          LS+       FP         L ++             W   + 
Sbjct: 363 LNVLEPAEYR-KMFDRLSV-------FPPSAHIPTILLSLI-------------WFDVIK 401

Query: 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP-----FLPPSLNFISVSNNK 523
            D +  +N  H            +L  ++ +      SIP           N  ++ +  
Sbjct: 402 SDVMVVVNKLHK----------YSL--VEKQPKESTISIPSIYLELKVKLENEYAL-HRS 448

Query: 524 L--SGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSK 581
           +     IP +F +              + +IPP L       +       H         
Sbjct: 449 IVDHYNIPKTFDS--------------DDLIPPYLDQYFYSHI-----GHH--------- 480

Query: 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLI-LRS 640
                + N+   +      +  ++  FLE       +I     AW  + S L  L  L+ 
Sbjct: 481 -----LKNIEHPERMTLFRMVFLDFRFLE------QKIRHDSTAWNASGSILNTLQQLKF 529

Query: 641 NRFHGPITYSVTRFPFPKLRILDLSNNEF-----TGVLPTRYFQNFQ-AMMHGNN 689
            + +  I  +    P  +  +  + +  F       ++ ++Y    + A+M  + 
Sbjct: 530 YKPY--ICDND---PKYERLVNAILD--FLPKIEENLICSKYTDLLRIALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 82/567 (14%), Positives = 163/567 (28%), Gaps = 175/567 (30%)

Query: 9   FSFETRQPSGC--------GRLQSDS--YSKMISWKEE-----KDCC----SWDGVTCDM 49
              E RQPS           RL +D+  ++K    + +     +           V  D 
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 50  MTGHVTGLDLSC--SRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAH 107
           + G           + +   +     +              DF   +++      P    
Sbjct: 158 VLG--------SGKTWVALDVCLSYKV----------QCKMDFKIFWLNLKNCNSPE--- 196

Query: 108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE-------- 159
                          +  L KL    +  N     D      +   ++ +Q         
Sbjct: 197 -------------TVLEMLQKL-LYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLKS 240

Query: 160 -------LVLNSVDMSYEVPSFLTNLSS---LTSLDLGNC-GLQGSIPENIFRLPNLQNL 208
                  LVL +V  +    +F  NLS    LT+        L  +   +I    +   L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 209 ILSYNKNLTSVF---------PKVNWSSPLRFMDLYGCNFMGSIPASL-GNLSQL-TYLD 257
                K+L   +          +V  ++P R         +  I  S+   L+    +  
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRR---------LSIIAESIRDGLATWDNWKH 349

Query: 258 LSYNNFSGHIPSTLSNLQ--QLRHL--DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
           ++ +  +  I S+L+ L+  + R +   LS          +F                + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLS----------VF--------------PPSA 385

Query: 314 PISSSVSRLHSLVTI--YLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV 371
            I + +     L  I   +  + +   + + L    L+E    +  + T SI  SI    
Sbjct: 386 HIPTIL-----LSLIWFDVIKSDV-MVVVNKLHKYSLVEK---QPKESTISI-PSI---- 431

Query: 372 NLIDLSLSSNNLSGNVELYMFAEL-KNLLGLDLSHNSLSLSTLLPV---NSSFPYLSMLS 427
             ++L +   N            L ++++       +     L+P       + ++    
Sbjct: 432 -YLELKVKLENE---------YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHH 480

Query: 428 LSSCNISEFPDFLRTQHRLQILDLS--DNQIRGGIPNWIWNVG-KDTLNHLNLSHNFLTG 484
           L +    E     R       LD    + +IR     W  +    +TL  L     ++  
Sbjct: 481 LKNIEHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC- 535

Query: 485 IELLPWKNLRYLDLRSNSLKGSIPFLP 511
                  N    +   N++   + FLP
Sbjct: 536 ------DNDPKYERLVNAI---LDFLP 553

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 77/566 (13%), Positives = 158/566 (27%), Gaps = 181/566 (31%)

Query: 399 LGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLR---TQHRL-QILDLSDN 454
           +  +   +      +L V     ++       C   +  D  +   ++  +  I+   D 
Sbjct: 7   MDFETGEHQYQYKDILSVFED-AFVDNFD---CK--DVQDMPKSILSKEEIDHIIMSKDA 60

Query: 455 QIRGGIPNWIW-NVGKDTLNH-----LNLSHNFLTGIELLPWKN---------LRYLDLR 499
                   W   +  ++ +       L +++ FL      P K            Y++ R
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS----PIKTEQRQPSMMTRMYIEQR 116

Query: 500 SNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
                 +  F        +VS  +   ++  +   +     V      ++G++       
Sbjct: 117 DRLYNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNV-----LIDGVL------- 159

Query: 560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-----LSLVNC-SFLEVLD 613
                        G       K + + +      +++  +      L+L NC S   VL+
Sbjct: 160 -------------G-----SGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK-LRILD-LSNNE--- 668
           +    +    P W         + LR +     +   +   P+   L +L  + N +   
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 669 -FTG----VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVL 723
            F      +L TR+ Q    +               +   +++S  LT      E++ +L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFL---------SAATTTHISLDHHSMTLTPD----EVKSLL 307

Query: 724 NIFTTIDLSGNKFQGRIPEVVGKLN----SLKGL----------NFSH---NKLTGLIPY 766
             +             +P  V   N    S+             N+ H   +KLT +I  
Sbjct: 308 LKYLDCRPQ------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 767 SLENLTQLESLDL---------SSNKVAGEIP-------W-QLTSLNFLQVLNLSQNQ-- 807
           SL  L   E   +         S++     IP       W  +   + + V+N       
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 808 ------------------LVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDEVTEP 849
                             L   +      H    D YN               +D++  P
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---------SDDLIPP 467

Query: 850 IQDR-------------EEDDTWSLF 862
             D+             E  +  +LF
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLF 493

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLT-----SVFPKVNWS 226
           P+   +   + ++D  +  +     +++  L  ++ + L     +       +    N  
Sbjct: 54  PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ 113

Query: 227 SPLRFMDLYGCNFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPST-LSNLQQLRHLDLS 283
             +  M++  C  +      +L +   L YL LS             +    L  L+L 
Sbjct: 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 34/137 (24%)

Query: 373 LIDLSLSSNNLSGNVELYMFAE-LKN---LLGLDLSHNSL------SLSTLLPVNSSFPY 422
           L +++L++        L   AE LK    +    +           +L+ +L VN++   
Sbjct: 38  LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT--- 94

Query: 423 LSMLSLSSCNISE-----FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK-------- 469
           L  L++ S  IS        + L++   L  L + +          + N  +        
Sbjct: 95  LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS------QPLGNNVEMEIANMLE 148

Query: 470 --DTLNHLNLSHNFLTG 484
              TL            
Sbjct: 149 KNTTLLKFGYHFTQQGP 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	920
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.06

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-89  Score=832.21  Aligned_cols=702  Identities=30%  Similarity=0.452  Sum_probs=516.0

Q ss_pred             CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCCccccceEecCCCCcEEEEECCCCCCccc---CCCCCCccCC
Q 048289            1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGS---IPSDSSLFSL   77 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~~~~~l~~l   77 (920)
                      |||+||+++.||.               ++++|..+++||.|+||+|+  .++|++|+|+++.+.|.   +++  ++..+
T Consensus        16 all~~k~~~~~~~---------------~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~~L   76 (768)
T 3rgz_A           16 QLISFKDVLPDKN---------------LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLLSL   76 (768)
T ss_dssp             HHHHHHTTCSCTT---------------SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTTTC
T ss_pred             HHHHHHhhCCCcc---------------cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--hHhcc
Confidence            7899999997542               68999888999999999998  58999999999999987   777  89999


Q ss_pred             CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCc--cccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCC
Q 048289           78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPA--EISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLN  155 (920)
Q Consensus        78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~  155 (920)
                      ++|+.++++.+.+..  +|+.++++++|++|+|++|.+.+.+|.  .++++++|++|++++|.+......   ..+.+++
T Consensus        77 ~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~  151 (768)
T 3rgz_A           77 TGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV---SGGLKLN  151 (768)
T ss_dssp             TTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC---CSCCCCT
T ss_pred             CcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH---HHhccCC
Confidence            999999999998744  678899999999999999999998988  899999999999999966432111   1125678


Q ss_pred             CCCEEEcCCCCCCCCcchh---ccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289          156 ELQELVLNSVDMSYEVPSF---LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM  232 (920)
Q Consensus       156 ~L~~L~L~~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  232 (920)
                      +|++|++++|.+++..+..   +.++++|++|++++|.+.+..+.  ..+++|++|++++| .+.+.+|.++.+++|++|
T Consensus       152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L  228 (768)
T 3rgz_A          152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHL  228 (768)
T ss_dssp             TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEE
T ss_pred             CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCC-cCCCCCcccccCCCCCEE
Confidence            8888888888887777766   67788888888888887765543  67778888888887 566666667777777777


Q ss_pred             EccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcC-CCCCEEECcCCCC
Q 048289          233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL-TQLSFLDFSNNQL  311 (920)
Q Consensus       233 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l  311 (920)
                      ++++|.+.+.+|..++.+++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|++
T Consensus       229 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred             ECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence            77777777777777777777777777777777666654  67777777777777777777666554 7777777777777


Q ss_pred             CCcccccccCCCcCceeeccCccccccCCcc-ccCCCCCCEEEccCCCCCCCchhhhhcCC-CCCEEEccCCcCCCcchh
Q 048289          312 NGPISSSVSRLHSLVTIYLSYNSLNGTIPSG-LFTSPLLESIDLRNNQLTGSISNSISELV-NLIDLSLSSNNLSGNVEL  389 (920)
Q Consensus       312 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~  389 (920)
                      .+.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.++.
T Consensus       307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~  386 (768)
T 3rgz_A          307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP  386 (768)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred             CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence            7777777777777777777777776666655 66677777777777777666666666665 666666666665543221


Q ss_pred             hhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCc-CCchhhhcccccceeccCCCccCCCCCchhhccC
Q 048289          390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG  468 (920)
Q Consensus       390 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  468 (920)
                      ...                        ...+++|++|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+.  .
T Consensus       387 ~~~------------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~  440 (768)
T 3rgz_A          387 NLC------------------------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--S  440 (768)
T ss_dssp             TTT------------------------CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--G
T ss_pred             hhh------------------------hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--c
Confidence            110                        011345555555555554 4566666666677777776666666665554  2


Q ss_pred             CCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcC
Q 048289          469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL  548 (920)
Q Consensus       469 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  548 (920)
                      ++                                          +|++|++++|.+++.+|..+..+++|++|++++|++
T Consensus       441 l~------------------------------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  478 (768)
T 3rgz_A          441 LS------------------------------------------KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL  478 (768)
T ss_dssp             CT------------------------------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CC------------------------------------------CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence            22                                          444455555555556666666666777777777777


Q ss_pred             CCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh
Q 048289          549 NGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL  627 (920)
Q Consensus       549 ~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l  627 (920)
                      ++.+|..+...+ |++|++++|++++.+|..+..+++|++|+|++|++++.+|..+.++++|++|++++|+++|.+|..+
T Consensus       479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            666666666655 6666666666666666666667777777777777776777777777777777777777777777666


Q ss_pred             cCCCCCCEEEccCc-eee---------------------cccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccc
Q 048289          628 GALSELQVLILRSN-RFH---------------------GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMM  685 (920)
Q Consensus       628 ~~l~~L~~L~L~~N-~l~---------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~  685 (920)
                      .....+..+++..+ ++.                     +..+...  ..++.++.++++.|.+.|.+|           
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~l~~~~~~g~~~-----------  625 (768)
T 3rgz_A          559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGHTS-----------  625 (768)
T ss_dssp             GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG--GGGGGTCCSCTTSCEEEEECC-----------
T ss_pred             hcccchhhhhccccccccccccccccccccccccccccccccchhh--hccccccccccccceecccCc-----------
Confidence            65555444433321 110                     0000000  011112222223333333222           


Q ss_pred             cCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcC
Q 048289          686 HGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP  765 (920)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  765 (920)
                                                      .....++.|+.|||++|+++|.+|.++++++.|+.|+|++|+++|.||
T Consensus       626 --------------------------------~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          626 --------------------------------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             --------------------------------CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             --------------------------------hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                                            122335778999999999999999999999999999999999999999


Q ss_pred             cccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCcccccCCcCCCCCCCCCCCCCCC
Q 048289          766 YSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDE  845 (920)
Q Consensus       766 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~  845 (920)
                      .+|+++++|++||||+|+++|.||..++++++|++||+++|+++|+||.++||.+|...+|.||++|||.|+. .|....
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987 897553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.3e-69  Score=654.81  Aligned_cols=633  Identities=31%  Similarity=0.430  Sum_probs=477.2

Q ss_pred             CCCCEEECCCCCCCCC--CCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCC
Q 048289           78 PHLQILNLAFNDFNYS--YISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLN  155 (920)
Q Consensus        78 ~~L~~L~Ls~~~~~~~--~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~  155 (920)
                      .+++.|+|+++.+.+.  .+|+.+.++++|+.++++.+.+. .+|..++++++|++|||++|.+                
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l----------------  112 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSL----------------  112 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEE----------------
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcC----------------
Confidence            4677888888877652  15667788888888888887765 4667788888888888887743                


Q ss_pred             CCCEEEcCCCCCCCCcch--hccCCCCCCEEEccCCcCCCCCCccc-CCCCCCCEEEccCCCCCCcCCC-C---cCCCCC
Q 048289          156 ELQELVLNSVDMSYEVPS--FLTNLSSLTSLDLGNCGLQGSIPENI-FRLPNLQNLILSYNKNLTSVFP-K---VNWSSP  228 (920)
Q Consensus       156 ~L~~L~L~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~-~---~~~l~~  228 (920)
                                  ++.+|.  .++++++|++|++++|.+.+.+|..+ .++++|++|++++| .+.+..+ .   +..+++
T Consensus       113 ------------~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~  179 (768)
T 3rgz_A          113 ------------SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGE  179 (768)
T ss_dssp             ------------EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTT
T ss_pred             ------------CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCC
Confidence                        334455  66667777777777776666666554 66777777777777 5555544 2   567777


Q ss_pred             CCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC
Q 048289          229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN  308 (920)
Q Consensus       229 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  308 (920)
                      |++|++++|.+.+..+.  ..+++|++|++++|.+++.+|. ++.+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus       180 L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          180 LKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             CCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            77777777777765553  7888899999999988877776 88899999999999999888888899999999999999


Q ss_pred             CCCCCcccccccCCCcCceeeccCccccccCCccccCC-CCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcc
Q 048289          309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNV  387 (920)
Q Consensus       309 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  387 (920)
                      |.+.+.+|..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..+..+++|++|++++|.+++.+
T Consensus       257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            9888776665  78899999999999988888888775 89999999999999888999999999999999999888777


Q ss_pred             hhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhccc-ccceeccCCCccCCCCCchhhc
Q 048289          388 ELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH-RLQILDLSDNQIRGGIPNWIWN  466 (920)
Q Consensus       388 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~  466 (920)
                      +...+..+++|++|++++|.++.                        .+|..+..++ +|+.|++++|.+.+.+|..+..
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~------------------------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~  390 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSG------------------------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ  390 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEE------------------------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred             CHHHHhcCCCCCEEeCcCCccCc------------------------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence            77767777777777777766542                        2566676666 7888888888777666655431


Q ss_pred             cCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCC
Q 048289          467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNN  546 (920)
Q Consensus       467 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  546 (920)
                      ..                                          +++|++|++++|.+++.+|..+.++++|++|++++|
T Consensus       391 ~~------------------------------------------~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          391 NP------------------------------------------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             ST------------------------------------------TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred             cc------------------------------------------cCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence            11                                          235666667777777777777777777777777777


Q ss_pred             cCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCch
Q 048289          547 SLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA  625 (920)
Q Consensus       547 ~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  625 (920)
                      ++++.+|..+...+ |+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.
T Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            77777777777666 77777777777777777777777888888888888777777777888888888888888877788


Q ss_pred             hhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceecc----
Q 048289          626 WLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY----  701 (920)
Q Consensus       626 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~----  701 (920)
                      +++.+++|++|++++|++++.+|..+  ..+++|+.||+++|+++|.+|..++.... +....... .....+...    
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~  584 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIA-GKRYVYIKNDGMK  584 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTT-CBCCSTTC-SCEEEEEECCSCC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcccc-hhhhhccc-ccccccccccccc
Confidence            88888888888888888877777665  45677888888888888888766543221 11111000 000000000    


Q ss_pred             -CcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCC
Q 048289          702 -GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLS  780 (920)
Q Consensus       702 -~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls  780 (920)
                       ............+........+..+..++++.|.++|.+|..++.++.|+.|||++|+++|.+|.+++++++|++|||+
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  664 (768)
T 3rgz_A          585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG  664 (768)
T ss_dssp             TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence             0000111122333333333445667788999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCcccccCCCCCCeeeccCCcccCCCCCC
Q 048289          781 SNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG  815 (920)
Q Consensus       781 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  815 (920)
                      +|+++|.||..++++++|++||+|+|+++|.||..
T Consensus       665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             CCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            99999999999999999999999999999999975

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.4e-57  Score=546.53  Aligned_cols=604  Identities=23%  Similarity=0.229  Sum_probs=385.0

Q ss_pred             EEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcC
Q 048289           56 GLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS  135 (920)
Q Consensus        56 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls  135 (920)
                      .++++++.+. .+|.  .+.  +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++|+++
T Consensus         8 ~~~cs~~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            8 VADCSHLKLT-QVPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             EEECCSSCCS-SCCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             eeECCCCCcc-cccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            3555566554 4554  332  5677777777766652 33346666777777777776666666666666666666666


Q ss_pred             CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC
Q 048289          136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN  215 (920)
Q Consensus       136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~  215 (920)
                      +|.+.                            ...+..|+++++|++|++++|.+.+..|..++++++|++|++++| .
T Consensus        82 ~n~l~----------------------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~  132 (680)
T 1ziw_A           82 HNELS----------------------------QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-G  132 (680)
T ss_dssp             SSCCC----------------------------CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-C
T ss_pred             CCccC----------------------------ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-c
Confidence            66443                            333345666666666666666666555556666666666666666 4


Q ss_pred             CCcCCC-CcCCCCCCCEEEccCCcCccccccccc--CCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccch
Q 048289          216 LTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLG--NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP  292 (920)
Q Consensus       216 ~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  292 (920)
                      +.+..+ .++.+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+++|+.|++.++.+.....
T Consensus       133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  212 (680)
T 1ziw_A          133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT  212 (680)
T ss_dssp             CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred             ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence            444444 556666677777777777666555543  45788888888888887777788888888888888877664332


Q ss_pred             hhhh---cCCCCCEEECcCCCCCCcccccccCCCc--CceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhh
Q 048289          293 CIFA---NLTQLSFLDFSNNQLNGPISSSVSRLHS--LVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSI  367 (920)
Q Consensus       293 ~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  367 (920)
                      ..+.   ..++|+.|++++|.+.+..+..+..++.  |++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+
T Consensus       213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (680)
T 1ziw_A          213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL  292 (680)
T ss_dssp             HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT
T ss_pred             HHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh
Confidence            2221   3478888888888888877777777754  8888888888877777778888888888888888887777778


Q ss_pred             hcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc-hhhhccccc
Q 048289          368 SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRL  446 (920)
Q Consensus       368 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L  446 (920)
                      ..+++|+.|++++|...+.+....   ++                                      .++ ..+..+++|
T Consensus       293 ~~l~~L~~L~L~~~~~~~~~~~~~---lp--------------------------------------~i~~~~~~~l~~L  331 (680)
T 1ziw_A          293 HGLFNVRYLNLKRSFTKQSISLAS---LP--------------------------------------KIDDFSFQWLKCL  331 (680)
T ss_dssp             TTCTTCCEEECTTCBCCC---------CC--------------------------------------EECTTTTTTCTTC
T ss_pred             cCCCCccEEeccchhhhccccccc---cc--------------------------------------ccChhhcccCCCC
Confidence            888888888887765443221100   00                                      000 134445556


Q ss_pred             ceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCc--cCCCCcccceEecccCcCCCCCCCCCCCCceEEecCcee
Q 048289          447 QILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI--ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKL  524 (920)
Q Consensus       447 ~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l  524 (920)
                      +.|++++|.+.+..+..+.  .+++|++|++++|.+...  ....+..+                ..++|+.|++++|++
T Consensus       332 ~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~~~----------------~~~~L~~L~L~~n~l  393 (680)
T 1ziw_A          332 EHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSL----------------AHSPLHILNLTKNKI  393 (680)
T ss_dssp             CEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCCEECTTTTGGG----------------TTSCCCEEECTTSCC
T ss_pred             CEEECCCCccCCCChhHhc--cccCCcEEECCCCchhhhhcchhhhccc----------------ccCcCceEECCCCCC
Confidence            6666666666555554444  455555555555543211  11111000                013566666777777


Q ss_pred             cccCcccccCCCCcCeEeCCCCcCCCcCc-ccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccc--cccC
Q 048289          525 SGEIPLSFCNMSSIFYVNLSNNSLNGMIP-PCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE--GSVP  600 (920)
Q Consensus       525 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p  600 (920)
                      ++..|.+|..+++|+.|++++|.+.+.+| ..+.... |+.|++++|++.+..+..|..+++|+.|++++|.++  +..|
T Consensus       394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p  473 (680)
T 1ziw_A          394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP  473 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred             CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence            66667777777777777777777765544 3344444 555566555555555555555556666666665554  3455


Q ss_pred             ccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhh
Q 048289          601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQN  680 (920)
Q Consensus       601 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  680 (920)
                      ..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..                      +|....  
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------~~~~~~--  529 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA----------------------NPGGPI--  529 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT----------------------STTSCC--
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh----------------------ccCCcc--
Confidence            55555555555555555555555555555555555555555544321111                      010000  


Q ss_pred             hhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccc
Q 048289          681 FQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKL  760 (920)
Q Consensus       681 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  760 (920)
                                                           .....++.|+.|+|++|+++...+..|+++++|+.|+|++|++
T Consensus       530 -------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  572 (680)
T 1ziw_A          530 -------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL  572 (680)
T ss_dssp             -------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             -------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence                                                 0011246678899999999855455688999999999999999


Q ss_pred             cCCcCcccccccCCccccCCCCcccccCccccc-CCCCCCeeeccCCcccCCCCC
Q 048289          761 TGLIPYSLENLTQLESLDLSSNKVAGEIPWQLT-SLNFLQVLNLSQNQLVGPIPQ  814 (920)
Q Consensus       761 ~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~ls~N~l~g~iP~  814 (920)
                      ++..+..|..+++|++|+|++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus       573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            988888889999999999999999998888887 788999999999998877654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.5e-55  Score=527.93  Aligned_cols=593  Identities=21%  Similarity=0.223  Sum_probs=375.2

Q ss_pred             CEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEE
Q 048289           81 QILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQEL  160 (920)
Q Consensus        81 ~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L  160 (920)
                      ++++++++.++.  +|..+.  +++++|+|++|.+++..+..++++++|++|++++|                       
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-----------------------   59 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-----------------------   59 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-----------------------
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-----------------------
Confidence            345666665544  554443  55666666666665444445555555555555555                       


Q ss_pred             EcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCc
Q 048289          161 VLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFM  240 (920)
Q Consensus       161 ~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~  240 (920)
                           .+++..|..++++++|++|++++|.+++..+..|+.+++|++|++++| .+                       .
T Consensus        60 -----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l-----------------------~  110 (680)
T 1ziw_A           60 -----TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SI-----------------------Q  110 (680)
T ss_dssp             -----CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CC-----------------------C
T ss_pred             -----ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-cc-----------------------C
Confidence                 333455666667777777777777776444445666666666666666 33                       3


Q ss_pred             ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhh--cCCCCCEEECcCCCCCCccccc
Q 048289          241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA--NLTQLSFLDFSNNQLNGPISSS  318 (920)
Q Consensus       241 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~  318 (920)
                      +..|..|+++++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+.  .+++|++|++++|.+.+..+..
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  190 (680)
T 1ziw_A          111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC  190 (680)
T ss_dssp             CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred             ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence            33334445555555555555555544444455555555555555555544444332  3345555555555555555555


Q ss_pred             ccCCCcCceeeccCccccccCCccc---cCCCCCCEEEccCCCCCCCchhhhhcCCC--CCEEEccCCcCCCcchhhhhh
Q 048289          319 VSRLHSLVTIYLSYNSLNGTIPSGL---FTSPLLESIDLRNNQLTGSISNSISELVN--LIDLSLSSNNLSGNVELYMFA  393 (920)
Q Consensus       319 l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~  393 (920)
                      +..+++|+.+++.++.+.+.....+   ...++|+.|++++|.+.+..+..+..++.  |+.|++++|.+++ +....+.
T Consensus       191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~  269 (680)
T 1ziw_A          191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFA  269 (680)
T ss_dssp             GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTT
T ss_pred             hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cCccccc
Confidence            5555555555555544432111111   02245566666666655555555554432  5555555555542 1112222


Q ss_pred             hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCc
Q 048289          394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLN  473 (920)
Q Consensus       394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~  473 (920)
                      .+++|++|++++|.++.                        ..|..+..+++|+.|++++|...+.++..          
T Consensus       270 ~l~~L~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~----------  315 (680)
T 1ziw_A          270 WLPQLEYFFLEYNNIQH------------------------LFSHSLHGLFNVRYLNLKRSFTKQSISLA----------  315 (680)
T ss_dssp             TCTTCCEEECCSCCBSE------------------------ECTTTTTTCTTCCEEECTTCBCCC---------------
T ss_pred             CcccccEeeCCCCccCc------------------------cChhhhcCCCCccEEeccchhhhcccccc----------
Confidence            22233333222222211                        12344555555666666554433221100          


Q ss_pred             EEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcC-
Q 048289          474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI-  552 (920)
Q Consensus       474 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-  552 (920)
                                     .++.+.          ......+++|++|++++|.+++..+..|.++++|++|++++|.+.... 
T Consensus       316 ---------------~lp~i~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l  370 (680)
T 1ziw_A          316 ---------------SLPKID----------DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL  370 (680)
T ss_dssp             ----------------CCEEC----------TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred             ---------------cccccC----------hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence                           000000          000112457778888888888888888888999999999998765321 


Q ss_pred             c-ccccc---cccceeecCCCcccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCCcccccCchhh
Q 048289          553 P-PCLAN---SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNNRINGTFPAWL  627 (920)
Q Consensus       553 p-~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l  627 (920)
                      + ..+..   ..|+.|++++|++++..|..|..+++|+.|++++|++++.+| ..|.++++|++|++++|++.+..+..|
T Consensus       371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  450 (680)
T 1ziw_A          371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF  450 (680)
T ss_dssp             CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT
T ss_pred             chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh
Confidence            2 22222   249999999999999999999999999999999999987666 688999999999999999998888999


Q ss_pred             cCCCCCCEEEccCceee--cccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289          628 GALSELQVLILRSNRFH--GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY  705 (920)
Q Consensus       628 ~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  705 (920)
                      ..+++|++|++++|.+.  +.+|..+  ..+++|+.|++++|++++..| ..+.+                         
T Consensus       451 ~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~i~~-~~~~~-------------------------  502 (680)
T 1ziw_A          451 ALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIANIND-DMLEG-------------------------  502 (680)
T ss_dssp             TTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCCCCT-TTTTT-------------------------
T ss_pred             hcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCcCCh-hhhcc-------------------------
Confidence            99999999999999987  3455544  568899999999999986544 22222                         


Q ss_pred             eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch--------hhhhccCCCceEeccCccccCCcCcccccccCCccc
Q 048289          706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP--------EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL  777 (920)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  777 (920)
                                       ++.|++|+|++|.+++..+        ..++.+++|+.|+|++|+++...+..|+++++|++|
T Consensus       503 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          503 -----------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII  565 (680)
T ss_dssp             -----------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             -----------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence                             4567899999999986422        247899999999999999997666789999999999


Q ss_pred             cCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCC--CCCCCCcccccCCcCCCC
Q 048289          778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGK--QFHTFSSDSYNGNMGLCG  834 (920)
Q Consensus       778 ~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg  834 (920)
                      ||++|++++..|..|..+++|++|++++|++++..|...  .+.........|||..|.
T Consensus       566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            999999998888889999999999999999998766421  233333444455555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4e-51  Score=486.77  Aligned_cols=536  Identities=21%  Similarity=0.188  Sum_probs=330.5

Q ss_pred             EEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCC
Q 048289          159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGC  237 (920)
Q Consensus       159 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n  237 (920)
                      .++.++..++ .+|..+.  +.+++|++++|.+++..|..|.++++|++|++++| .+....| .|..+++|++|++++|
T Consensus        16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCC
Confidence            4555554444 2333332  24555555555555544555555555555555555 3333333 3444444444444444


Q ss_pred             cCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccc
Q 048289          238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISS  317 (920)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  317 (920)
                      .+.+..|.+++++++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            44444444444444444444444444433334444444444444444444432212222244444444444444444344


Q ss_pred             cccCCCcCc--eeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhc
Q 048289          318 SVSRLHSLV--TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAEL  395 (920)
Q Consensus       318 ~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  395 (920)
                      .++.+++|+  +|++++|.+.+..|.. .....|+.|++++|.   ..+..+..                         +
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~-~~~~~L~~L~l~~~~---~~~~~~~~-------------------------l  222 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEPGA-FDSAVFQSLNFGGTQ---NLLVIFKG-------------------------L  222 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECTTT-TTTCEEEEEECTTCS---CHHHHHHH-------------------------T
T ss_pred             hhhhhcccceeEEecCCCccCccChhH-hhhccccccccCCch---hHHHHhhh-------------------------c
Confidence            444444444  4444444444322222 122334444444332   12222222                         2


Q ss_pred             CCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCC-chhhhccc--ccceeccCCCccCCCCCchhhccCCCCC
Q 048289          396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEF-PDFLRTQH--RLQILDLSDNQIRGGIPNWIWNVGKDTL  472 (920)
Q Consensus       396 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~~~--~L~~L~Ls~n~l~~~~~~~~~~~~~~~L  472 (920)
                      .++....+....+...            .        ...+ +..+..+.  +|+.|++++|.+.+..+..+.  .+++|
T Consensus       223 ~~~~l~~l~~~~~~~~------------~--------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L  280 (606)
T 3t6q_A          223 KNSTIQSLWLGTFEDM------------D--------DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH--CFSGL  280 (606)
T ss_dssp             TTCEEEEEECCCCTTS------------C--------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT--TCTTC
T ss_pred             cccchhheechhhccc------------c--------ccccChhHhchhhcCceeEEEeecCccCccCHHHhc--cccCC
Confidence            2222221111111000            0        0001 11122211  455555665555554444444  44455


Q ss_pred             cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcC
Q 048289          473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMI  552 (920)
Q Consensus       473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  552 (920)
                      ++|++++|.++.++.. +                  ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+
T Consensus       281 ~~L~l~~n~l~~lp~~-l------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          281 QELDLTATHLSELPSG-L------------------VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             SEEECTTSCCSCCCSS-C------------------CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred             CEEeccCCccCCCChh-h------------------cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence            5555555544433210 0                  11346777777777777777778888888888888888888666


Q ss_pred             ccc-ccccc-cceeecCCCcccccC--CccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCch-hh
Q 048289          553 PPC-LANSS-LWFLDMRMNNFHGSI--PQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA-WL  627 (920)
Q Consensus       553 p~~-~~~~~-L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l  627 (920)
                      |.. +...+ |++|++++|.+++..  +..+..+++|+.|++++|++++..|..|..+++|++|++++|++++..|. .+
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  421 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF  421 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence            554 55555 888888888888766  77888899999999999999888888899999999999999999877654 48


Q ss_pred             cCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCC-ch-HHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289          628 GALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVL-PT-RYFQNFQAMMHGNNNSAEGGNMYINYGNEY  705 (920)
Q Consensus       628 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  705 (920)
                      ..+++|++|++++|.+.+..|..+  ..+++|+.|++++|++++.. |. ..+                           
T Consensus       422 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------------  472 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL---------------------------  472 (606)
T ss_dssp             TTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG---------------------------
T ss_pred             hCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh---------------------------
Confidence            889999999999999888777655  45789999999999887632 11 111                           


Q ss_pred             eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289          706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA  785 (920)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  785 (920)
                                     ..++.|+.|++++|.+++.+|..|+.+++|+.|+|++|++++.+|+.+.++++| +||+++|+++
T Consensus       473 ---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          473 ---------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             ---------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             ---------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence                           124678999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ccCcccccCCCCCCeeeccCCcccCCCC
Q 048289          786 GEIPWQLTSLNFLQVLNLSQNQLVGPIP  813 (920)
Q Consensus       786 g~ip~~l~~l~~L~~L~ls~N~l~g~iP  813 (920)
                      +.+|..+..+++|+++++++|++.+..|
T Consensus       537 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          537 IILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999999998766

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-50  Score=482.75  Aligned_cols=540  Identities=19%  Similarity=0.181  Sum_probs=399.1

Q ss_pred             CCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 048289          129 LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNL  208 (920)
Q Consensus       129 L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  208 (920)
                      -++++.++..+..++...       ...+++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   86 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTL-------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL   86 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CceEECCCCCcccCcCCC-------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence            347888887776655321       2479999999999999989999999999999999999998889999999999999


Q ss_pred             EccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcC
Q 048289          209 ILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF  287 (920)
Q Consensus       209 ~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  287 (920)
                      ++++| .+.+..| .++.+++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        87 ~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A           87 VLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             ECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             eCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            99999 6777666 899999999999999999988788899999999999999999975544555699999999999999


Q ss_pred             cccchhhhhcCCCCC--EEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchh
Q 048289          288 TGQIPCIFANLTQLS--FLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISN  365 (920)
Q Consensus       288 ~~~~p~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  365 (920)
                      ++..|..++.+++|+  .|++++|.+.+..+..+.. .+|++|++++|..   ++..+..+..++...+....+.+    
T Consensus       166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~----  237 (606)
T 3t6q_A          166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFED----  237 (606)
T ss_dssp             CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTT----
T ss_pred             cccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhcc----
Confidence            988899999999999  9999999999887776654 6899999999862   33444444444443333222211    


Q ss_pred             hhhcCCCCCEEEccCCcCCCcchhhhhhhcC--CCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcc
Q 048289          366 SISELVNLIDLSLSSNNLSGNVELYMFAELK--NLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQ  443 (920)
Q Consensus       366 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~  443 (920)
                             +...+         +....+..+.  +|+.|++++|.++... ......+++|++|++++|.++.+|+.+..+
T Consensus       238 -------~~~~~---------i~~~~~~~l~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l  300 (606)
T 3t6q_A          238 -------MDDED---------ISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATHLSELPSGLVGL  300 (606)
T ss_dssp             -------SCCCC---------CCGGGGGGGGGSEEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSCCSCCCSSCCSC
T ss_pred             -------ccccc---------cChhHhchhhcCceeEEEeecCccCccC-HHHhccccCCCEEeccCCccCCCChhhccc
Confidence                   11001         1111222221  3444444444443221 111223444555555555555555555555


Q ss_pred             cccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCce
Q 048289          444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNK  523 (920)
Q Consensus       444 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~  523 (920)
                      ++|++|++++|.+.+..|..+.  .++                                          +|++|++++|.
T Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~--~l~------------------------------------------~L~~L~l~~n~  336 (606)
T 3t6q_A          301 STLKKLVLSANKFENLCQISAS--NFP------------------------------------------SLTHLSIKGNT  336 (606)
T ss_dssp             TTCCEEECTTCCCSBGGGGCGG--GCT------------------------------------------TCSEEECCSCS
T ss_pred             ccCCEEECccCCcCcCchhhhh--ccC------------------------------------------cCCEEECCCCC
Confidence            5555555555555543333332  222                                          33444444444


Q ss_pred             ecccCcc-cccCCCCcCeEeCCCCcCCCcC--cccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCcccccc
Q 048289          524 LSGEIPL-SFCNMSSIFYVNLSNNSLNGMI--PPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV  599 (920)
Q Consensus       524 l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  599 (920)
                      +.+.+|. .+..+++|++|++++|.+++..  +..+...+ |+.|++++|++.+..|..|..+++|+.|++++|++++..
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred             cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence            4433332 3666777777777777776554  55555555 778888888887777888888888999999998888766


Q ss_pred             Cc-cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecc-cCCCcccCCCCCCcEEEccCCcCcCCCchHH
Q 048289          600 PL-SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP-ITYSVTRFPFPKLRILDLSNNEFTGVLPTRY  677 (920)
Q Consensus       600 p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  677 (920)
                      |. .+..+++|++|++++|++++..|..+..+++|++|++++|++.+. ++.......+++|+.|++++|++++..|..+
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            54 488888999999999998888888888899999999999988763 3333334568899999999999987766432


Q ss_pred             HhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccC
Q 048289          678 FQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH  757 (920)
Q Consensus       678 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  757 (920)
                       .+                                          ++.|+.|||++|++++.+|..+.+++.| .|+|++
T Consensus       497 -~~------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          497 -TS------------------------------------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             -TT------------------------------------------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             -cc------------------------------------------ccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence             21                                          4668999999999999999999999999 999999


Q ss_pred             ccccCCcCcccccccCCccccCCCCcccccCc
Q 048289          758 NKLTGLIPYSLENLTQLESLDLSSNKVAGEIP  789 (920)
Q Consensus       758 N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  789 (920)
                      |++++.+|..++.+++|+.|++++|++++..+
T Consensus       533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999999998765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-51  Score=500.87  Aligned_cols=564  Identities=23%  Similarity=0.234  Sum_probs=397.3

Q ss_pred             EEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCC-C-CcCCCCCCCEEEccC
Q 048289          159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVF-P-KVNWSSPLRFMDLYG  236 (920)
Q Consensus       159 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~-~~~~l~~L~~L~L~~  236 (920)
                      ..+.++++++.. |.   -.++|++|++++|.+++..|..+.++++|++|++++| ...+.+ + .+..+++|++|++++
T Consensus         8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCC
Confidence            344444455433 33   3367777788877777767777777888888888777 333333 3 677777788888888


Q ss_pred             CcCcccccccccCCCCCCEEeCcCCcCCccCccc--ccCCCCCCEEEccCCcCcccch-hhhhcCCCCCEEECcCCCCCC
Q 048289          237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPST--LSNLQQLRHLDLSNNKFTGQIP-CIFANLTQLSFLDFSNNQLNG  313 (920)
Q Consensus       237 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~  313 (920)
                      |.+.+..|.+|+++++|++|++++|.+++..|..  +..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            8887777888888888888888888887655554  7788888888888888876544 567888888888888888887


Q ss_pred             cccccccCC--CcCceeeccCccccccCCccccCCCC------CCEEEccCCCCCCCchhhhhcC---CCCCEEEccCCc
Q 048289          314 PISSSVSRL--HSLVTIYLSYNSLNGTIPSGLFTSPL------LESIDLRNNQLTGSISNSISEL---VNLIDLSLSSNN  382 (920)
Q Consensus       314 ~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~  382 (920)
                      ..+..+..+  ++|+.|++++|.+.+..|..+..++.      |+.|++++|.+.+..+..+...   .+++.+.++.+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            777777766  77888888888887766666555544      7777777777666655544432   334444444222


Q ss_pred             CCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCC-chhhhc--ccccceeccCCCccCCC
Q 048289          383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEF-PDFLRT--QHRLQILDLSDNQIRGG  459 (920)
Q Consensus       383 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~--~~~L~~L~Ls~n~l~~~  459 (920)
                      ...                         .                +..+.+... +..+..  .++|+.|++++|.+.+.
T Consensus       243 ~~~-------------------------~----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          243 MGA-------------------------G----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             CBC-------------------------S----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccc-------------------------c----------------ccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence            110                         0                000011100 111111  24455556665555544


Q ss_pred             CCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcC
Q 048289          460 IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF  539 (920)
Q Consensus       460 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  539 (920)
                      .+..+.  .+++|+.|++++|.++.+....+.                  .+++|++|++++|.+++..|..|..+++|+
T Consensus       282 ~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          282 NSRVFE--TLKDLKVLNLAYNKINKIADEAFY------------------GLDNLQVLNLSYNLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             CSCCSS--SCCCCCEEEEESCCCCEECTTTTT------------------TCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred             Chhhhh--cCCCCCEEECCCCcCCCCChHHhc------------------CCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence            444443  444444444444444433322221                  246889999999999988899999999999


Q ss_pred             eEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289          540 YVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR  618 (920)
Q Consensus       540 ~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (920)
                      .|++++|.+.+..+..+...+ |+.|++++|.+++..     .+++|+.|++++|+++ .+|..   ..+++.|++++|+
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~  412 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENR  412 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCC
T ss_pred             EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---ccccceeecccCc
Confidence            999999999888777787777 999999999998532     3788999999999998 45543   4679999999999


Q ss_pred             ccccC-chhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcc
Q 048289          619 INGTF-PAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM  697 (920)
Q Consensus       619 l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~  697 (920)
                      +++.. +..+..+++|++|++++|++++..+... ...+++|+.|++++|.+++..+....                   
T Consensus       413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~~~~-------------------  472 (844)
T 3j0a_A          413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELC-------------------  472 (844)
T ss_dssp             CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCCSCCC-------------------
T ss_pred             cccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCccccccccccc-------------------
Confidence            98653 3346689999999999999986544322 23478999999999999854332100                   


Q ss_pred             eeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccc
Q 048289          698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL  777 (920)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  777 (920)
                                         ......++.|+.|||++|++++.+|..|+.+++|+.|+|++|++++..|..+.  ++|+.|
T Consensus       473 -------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L  531 (844)
T 3j0a_A          473 -------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL  531 (844)
T ss_dssp             -------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred             -------------------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence                               00011256789999999999999999999999999999999999998888777  899999


Q ss_pred             cCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCcccccCCcCCCCCCCCCCCCCCC
Q 048289          778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLSEKCSNDE  845 (920)
Q Consensus       778 ~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~  845 (920)
                      ||++|++++.+|..|.   +|+++++++|++.+..+.    ..|......++..+||.|....|..+.
T Consensus       532 ~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p~  592 (844)
T 3j0a_A          532 DISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYPD  592 (844)
T ss_dssp             EEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred             ECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCCch
Confidence            9999999999998765   689999999999887663    233322234566778877766786543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-50  Score=482.34  Aligned_cols=536  Identities=19%  Similarity=0.173  Sum_probs=336.9

Q ss_pred             CCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEcc
Q 048289          157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLY  235 (920)
Q Consensus       157 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~  235 (920)
                      -++++++++.++. +|..+.  +++++|++++|.+++..+..+.++++|++|++++| .+.+..+ .+..+++|++|+++
T Consensus        13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECC
Confidence            3567777776653 344333  67777777777777666667777777777777777 4555544 56666777777777


Q ss_pred             CCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCc
Q 048289          236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGP  314 (920)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~  314 (920)
                      +|.+.+..|.+|+++++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|++++.
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            777666666667777777777777776665555666667777777777776664 4566666667777777777666665


Q ss_pred             ccccccCCCcCc----eeeccCccccccCCccccCCCCCCEEEccCCCCC-CCchhhhhcCCCCCEEEccCCcCCCcchh
Q 048289          315 ISSSVSRLHSLV----TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT-GSISNSISELVNLIDLSLSSNNLSGNVEL  389 (920)
Q Consensus       315 ~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  389 (920)
                      .+..++.+++|+    +|++++|.+.+ ++.......+|++|++++|.+. +..+..+..++.|+.+++..+.+.+    
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~----  243 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD----  243 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT----
T ss_pred             ChhhhhhhhccccccceeeccCCCcce-eCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc----
Confidence            555555554443    56666666553 2222233335555555555554 2334444555555554444332221    


Q ss_pred             hhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceecc-CCCccCCCCCchhhccC
Q 048289          390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDL-SDNQIRGGIPNWIWNVG  468 (920)
Q Consensus       390 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~L-s~n~l~~~~~~~~~~~~  468 (920)
                                           ........               ...+..+..+ .++.+++ ..+.+.+.+|. +.  .
T Consensus       244 ---------------------~~~l~~~~---------------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~--~  283 (606)
T 3vq2_A          244 ---------------------ERNLEIFE---------------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FH--C  283 (606)
T ss_dssp             ---------------------SCCCSCCC---------------GGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CG--G
T ss_pred             ---------------------CCcccccC---------------hHHhhhhhhc-cHhheeccccccccccccc-cc--c
Confidence                                 10000000               0001111111 2444444 44444444444 32  4


Q ss_pred             CCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCc
Q 048289          469 KDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS  547 (920)
Q Consensus       469 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  547 (920)
                      +++|+.|++++|.++.++. ..+                     ++|++|++++|.+ +.+| .+ .+++|+.|++++|+
T Consensus       284 l~~L~~L~l~~~~~~~l~~l~~~---------------------~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~  339 (606)
T 3vq2_A          284 LANVSAMSLAGVSIKYLEDVPKH---------------------FKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNK  339 (606)
T ss_dssp             GTTCSEEEEESCCCCCCCCCCTT---------------------CCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCS
T ss_pred             CCCCCEEEecCccchhhhhcccc---------------------ccCCEEEcccccC-cccc-cC-CCCccceeeccCCc
Confidence            4555555555555544331 112                     3445555555555 3444 33 55666666666664


Q ss_pred             CCCcCcccccccc-cceeecCCCccccc--CCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCc
Q 048289          548 LNGMIPPCLANSS-LWFLDMRMNNFHGS--IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFP  624 (920)
Q Consensus       548 l~~~~p~~~~~~~-L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  624 (920)
                      ..+.+  .+...+ |+.|++++|.+++.  .|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|++.+..|
T Consensus       340 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~  416 (606)
T 3vq2_A          340 GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE  416 (606)
T ss_dssp             SCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred             Cccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence            44332  222333 66666666666654  36666777777777777777764 55677777777777777777776666


Q ss_pred             -hhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCC-CchHHHhhhhccccCCCCCCCCCcceeccC
Q 048289          625 -AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV-LPTRYFQNFQAMMHGNNNSAEGGNMYINYG  702 (920)
Q Consensus       625 -~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~  702 (920)
                       ..+..+++|++|++++|++.+..|..+  ..+++|+.|++++|++++. +|.. +.                       
T Consensus       417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~-----------------------  470 (606)
T 3vq2_A          417 FSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FA-----------------------  470 (606)
T ss_dssp             TTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-----------------------
T ss_pred             hhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hc-----------------------
Confidence             567777777777777777777666554  4567778888888877763 3321 11                       


Q ss_pred             cceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCC
Q 048289          703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN  782 (920)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N  782 (920)
                                         .++.|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..|+++++|++|||++|
T Consensus       471 -------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          471 -------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             -------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             -------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence                               1456789999999999888889999999999999999999999999999999999999999


Q ss_pred             cccccCcccccCCC-CCCeeeccCCcccCCCCC
Q 048289          783 KVAGEIPWQLTSLN-FLQVLNLSQNQLVGPIPQ  814 (920)
Q Consensus       783 ~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~  814 (920)
                      +++ .+|..+..++ +|+++++++|++.+..|.
T Consensus       532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999 6777788886 599999999999876663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-50  Score=494.50  Aligned_cols=533  Identities=20%  Similarity=0.253  Sum_probs=350.2

Q ss_pred             EECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccC-CccccCCCCCCEEEcC
Q 048289           57 LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQI-PAEISHLSKLVSLDLS  135 (920)
Q Consensus        57 L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls  135 (920)
                      .+.+++++. .+|.     ..++|++|+|++|.++.. .|..|.++++|++|+|++|...+.+ |..+.++++|++|+|+
T Consensus         9 ~dcs~~~L~-~vP~-----lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            9 AFYRFCNLT-QVPQ-----VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEESCCCSS-CCCS-----SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             EEccCCCCC-CCCC-----CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            344555554 3332     345667777777766553 4556666777777777766544344 5556666666666666


Q ss_pred             CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcc--cCCCCCCCEEEccCC
Q 048289          136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPEN--IFRLPNLQNLILSYN  213 (920)
Q Consensus       136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n  213 (920)
                      +|.+                            .+..|..|.++++|++|++++|.+.+.+|..  +.++++|++|++++|
T Consensus        82 ~N~l----------------------------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           82 SSKI----------------------------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             TCCC----------------------------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             CCcC----------------------------cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence            6643                            3445666667777777777777766555543  666777777777776


Q ss_pred             CCCCcCCC--CcCCCCCCCEEEccCCcCcccccccccCC--CCCCEEeCcCCcCCccCcccccCCCC------CCEEEcc
Q 048289          214 KNLTSVFP--KVNWSSPLRFMDLYGCNFMGSIPASLGNL--SQLTYLDLSYNNFSGHIPSTLSNLQQ------LRHLDLS  283 (920)
Q Consensus       214 ~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~  283 (920)
                       .+.+..+  .++.+++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..|..++.+++      |++|+++
T Consensus       134 -~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls  212 (844)
T 3j0a_A          134 -QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS  212 (844)
T ss_dssp             -CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred             -cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence             3443322  45666666666666666666666666655  66777777777776666655555544      6777777


Q ss_pred             CCcCcccchhhhhcC---CCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccC--CCCCCEEEccCCC
Q 048289          284 NNKFTGQIPCIFANL---TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT--SPLLESIDLRNNQ  358 (920)
Q Consensus       284 ~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~  358 (920)
                      +|.+++..+..+...   .+++.+.+..+.+...               ...+.+.+..+..+..  .++|+.|++++|.
T Consensus       213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~  277 (844)
T 3j0a_A          213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGF  277 (844)
T ss_dssp             SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred             CCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCc
Confidence            776665555544432   4556666553322110               0111222112222222  2567888888887


Q ss_pred             CCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCch
Q 048289          359 LTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPD  438 (920)
Q Consensus       359 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~  438 (920)
                      +.+..+..+..+++|+.|++++|.+.+..                                                 |.
T Consensus       278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-------------------------------------------------~~  308 (844)
T 3j0a_A          278 VFSLNSRVFETLKDLKVLNLAYNKINKIA-------------------------------------------------DE  308 (844)
T ss_dssp             CCEECSCCSSSCCCCCEEEEESCCCCEEC-------------------------------------------------TT
T ss_pred             ccccChhhhhcCCCCCEEECCCCcCCCCC-------------------------------------------------hH
Confidence            77766777777777777777777765321                                                 12


Q ss_pred             hhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEE
Q 048289          439 FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFIS  518 (920)
Q Consensus       439 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~  518 (920)
                      .+..+++|++|++++|.+.+..|..+.  .+                                          ++|+.|+
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l------------------------------------------~~L~~L~  344 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFY--GL------------------------------------------PKVAYID  344 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCS--SC------------------------------------------TTCCEEE
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhc--CC------------------------------------------CCCCEEE
Confidence            233333444444444444433333332  22                                          2445555


Q ss_pred             ecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccc
Q 048289          519 VSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGS  598 (920)
Q Consensus       519 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  598 (920)
                      +++|++.+..+..|..+++|++|++++|.+++. +.   ...|+.|++++|+++. +|..   ..+++.|++++|++++.
T Consensus       345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENL  416 (844)
T ss_dssp             CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSS
T ss_pred             CCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCCCCccc-cccc---ccccceeecccCccccC
Confidence            555556556667788899999999999999853 22   2239999999999984 4443   46799999999999864


Q ss_pred             cC-ccccCCCCCcEEECCCCcccccCch-hhcCCCCCCEEEccCceeecccCCCc---ccCCCCCCcEEEccCCcCcCCC
Q 048289          599 VP-LSLVNCSFLEVLDVGNNRINGTFPA-WLGALSELQVLILRSNRFHGPITYSV---TRFPFPKLRILDLSNNEFTGVL  673 (920)
Q Consensus       599 ~p-~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~  673 (920)
                      .. ..+.++++|++|++++|++++..+. .+..+++|++|++++|.+.+..+...   .+..+++|+.|+|++|++++..
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  496 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP  496 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred             chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence            33 3356899999999999999976544 45678999999999999975433221   1245789999999999999766


Q ss_pred             chHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceE
Q 048289          674 PTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGL  753 (920)
Q Consensus       674 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L  753 (920)
                      |.. +.+                                          ++.|+.|||++|++++..|..+.  ++|+.|
T Consensus       497 ~~~-~~~------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L  531 (844)
T 3j0a_A          497 PGV-FSH------------------------------------------LTALRGLSLNSNRLTVLSHNDLP--ANLEIL  531 (844)
T ss_dssp             TTS-SSS------------------------------------------CCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred             hhH-ccc------------------------------------------hhhhheeECCCCCCCccChhhhh--ccccEE
Confidence            632 221                                          46789999999999987777666  899999


Q ss_pred             eccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289          754 NFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP  789 (920)
Q Consensus       754 ~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  789 (920)
                      +|++|++++.+|..|.   +|+.|++++|.+.+..+
T Consensus       532 ~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          532 DISRNQLLAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             ECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence            9999999999998764   78999999999988655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-49  Score=469.61  Aligned_cols=536  Identities=21%  Similarity=0.219  Sum_probs=345.5

Q ss_pred             EEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcC
Q 048289           56 GLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS  135 (920)
Q Consensus        56 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls  135 (920)
                      +++.++..+. .+|.  .+.  ++|++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus        15 ~~~c~~~~l~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           15 TYQCMDQKLS-KVPD--DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             EEECTTSCCS-SCCT--TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEccCCCcc-cCCC--CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            4666777665 4554  332  6777777777777653 44467777777777777777776666667777777777777


Q ss_pred             CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC
Q 048289          136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN  215 (920)
Q Consensus       136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~  215 (920)
                      +|++                            ++..|..|+++++|++|++++|.+.+..+..++++++|++|++++| .
T Consensus        89 ~n~l----------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~  139 (606)
T 3vq2_A           89 GNPI----------------------------QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-F  139 (606)
T ss_dssp             TCCC----------------------------CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-C
T ss_pred             CCcc----------------------------cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-c
Confidence            6643                            3455677788888888888888887666677788888888888777 3


Q ss_pred             CCc-CCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCC----EEeCcCCcCCccCcccccCCCCCCEEEccCCcCc-
Q 048289          216 LTS-VFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLT----YLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT-  288 (920)
Q Consensus       216 ~~~-~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-  288 (920)
                      +.+ .+| .++.+++|++|++++|.+.+..+..++.+++|+    +|++++|.+++..+..+... +|++|++++|.+. 
T Consensus       140 l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~  218 (606)
T 3vq2_A          140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS  218 (606)
T ss_dssp             CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCH
T ss_pred             ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccch
Confidence            432 334 556666666666666666655555554444333    56666666554443333333 5666666666554 


Q ss_pred             ccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEc-cCCCCCCCchhhh
Q 048289          289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDL-RNNQLTGSISNSI  367 (920)
Q Consensus       289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l  367 (920)
                      +..|..+.++++|+.+++..+.+...        ..+..       +....+..+..+ .++.+++ ..+.+.+.++. +
T Consensus       219 ~~~~~~~~~l~~L~~l~l~~~~~~~~--------~~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~  281 (606)
T 3vq2_A          219 NIMKTCLQNLAGLHVHRLILGEFKDE--------RNLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F  281 (606)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCTTS--------CCCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-C
T ss_pred             hHHHHHhccccccccccccccccccC--------Ccccc-------cChHHhhhhhhc-cHhheeccccccccccccc-c
Confidence            34445555555555555543332211        00000       000011111111 2334444 33444444443 4


Q ss_pred             hcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccc
Q 048289          368 SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQ  447 (920)
Q Consensus       368 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~  447 (920)
                      ..+++|+.|++++|.+.. ++  .+.                         .+++|++|++++|.++.+|..  .+++|+
T Consensus       282 ~~l~~L~~L~l~~~~~~~-l~--~l~-------------------------~~~~L~~L~l~~n~l~~lp~~--~l~~L~  331 (606)
T 3vq2_A          282 HCLANVSAMSLAGVSIKY-LE--DVP-------------------------KHFKWQSLSIIRCQLKQFPTL--DLPFLK  331 (606)
T ss_dssp             GGGTTCSEEEEESCCCCC-CC--CCC-------------------------TTCCCSEEEEESCCCSSCCCC--CCSSCC
T ss_pred             ccCCCCCEEEecCccchh-hh--hcc-------------------------ccccCCEEEcccccCcccccC--CCCccc
Confidence            445555555555554431 11  233                         334444444444444444422  445555


Q ss_pred             eeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCcc-----CCCCcccceEecccCcCCCCCCC--CCCCCceEEec
Q 048289          448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-----LLPWKNLRYLDLRSNSLKGSIPF--LPPSLNFISVS  520 (920)
Q Consensus       448 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~L~~L~L~~n~l~~~~~~--~~~~L~~L~l~  520 (920)
                      .|++++|+..+..  .+.  .+++|++|++++|.+++..     ...+++|++|++++|.+.+....  .+++|++|+++
T Consensus       332 ~L~l~~n~~~~~~--~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~  407 (606)
T 3vq2_A          332 SLTLTMNKGSISF--KKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ  407 (606)
T ss_dssp             EEEEESCSSCEEC--CCC--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred             eeeccCCcCccch--hhc--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC
Confidence            5555555333222  111  4455555555555555442     12345566666666665543322  25788899999


Q ss_pred             CceecccCc-ccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccc-cCCccccCCCcccEEEccCCcccc
Q 048289          521 NNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHG-SIPQTFSKGSRLTILNLNDNQLEG  597 (920)
Q Consensus       521 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  597 (920)
                      +|++.+..| ..+..+++|++|++++|.+++..|..+...+ |+.|++++|.+++ .+|..+..+++|+.|++++|++++
T Consensus       408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  487 (606)
T 3vq2_A          408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ  487 (606)
T ss_dssp             TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence            999988877 6888999999999999999988888888777 9999999999998 478899999999999999999999


Q ss_pred             ccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCC-CCcEEEccCCcCcCCCchH
Q 048289          598 SVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP-KLRILDLSNNEFTGVLPTR  676 (920)
Q Consensus       598 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~  676 (920)
                      ..|..+.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+  ..++ +|+.|++++|++.+..+..
T Consensus       488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~--~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL--QHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG--GGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH--hhhcccCcEEEccCCCcccCCccH
Confidence            99999999999999999999999999999999999999999999998 455553  4565 6999999999999988876


Q ss_pred             HHhhh
Q 048289          677 YFQNF  681 (920)
Q Consensus       677 ~~~~l  681 (920)
                      ++..+
T Consensus       565 ~~~~~  569 (606)
T 3vq2_A          565 KFLQW  569 (606)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            65543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.1e-51  Score=484.30  Aligned_cols=502  Identities=18%  Similarity=0.268  Sum_probs=370.2

Q ss_pred             CcccccccCccCCCCCCCCCcc-cCCCCcccCCCCCCCCCccc---cceEecCCCCcEEEEECCCCCCcccCCCCCCccC
Q 048289            1 MLLQFKQLFSFETRQPSGCGRL-QSDSYSKMISWKEEKDCCSW---DGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFS   76 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~-~~~~~~~l~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~   76 (920)
                      ||.+||.++..+.       |- ..+++...++|..+++||.|   .||+|+.. ++|++|+|+++.+.|.+|+  ++++
T Consensus        34 aL~~~~~~~~~~~-------w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~  103 (636)
T 4eco_A           34 ALKEIWDALNGKN-------WSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQ  103 (636)
T ss_dssp             HHHHHHHHTTGGG-------CCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGG
T ss_pred             HHHHHHHHcCCCC-------cccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhc
Confidence            5777887776542       22 33456677899988999999   99999865 8999999999999999998  8999


Q ss_pred             CCCCCEEECCCCCCCCC-----------CCCCcCCCCCCCCEEeCCCCCCcccCCccccC-CCCCCEEEcCCCCCCCCCC
Q 048289           77 LPHLQILNLAFNDFNYS-----------YISPGFTRFPNLAHLNLSVSSFSGQIPAEISH-LSKLVSLDLSGNSQLGLDT  144 (920)
Q Consensus        77 l~~L~~L~Ls~~~~~~~-----------~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~Ls~n~~~~~~~  144 (920)
                      +++|++|+|++|.+...           .+|...  +..|+ ++++++.+.+..|..+.. +..+..+++....+..   
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~---  177 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK---  177 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC---
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc---
Confidence            99999999999975211           133222  45566 777777777766666552 1222333333221111   


Q ss_pred             chHHHHHhcCCCCCEEEcC--CCCCCCCcchhccCCCCCCEEEccCCcCCCC-----------------CCcccC--CCC
Q 048289          145 PVLKALVQNLNELQELVLN--SVDMSYEVPSFLTNLSSLTSLDLGNCGLQGS-----------------IPENIF--RLP  203 (920)
Q Consensus       145 ~~l~~~~~~l~~L~~L~L~--~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~l~--~l~  203 (920)
                             .....++.+.+.  .|.+++ +|..++++++|++|++++|.+++.                 +|+.++  +++
T Consensus       178 -------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~  249 (636)
T 4eco_A          178 -------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK  249 (636)
T ss_dssp             -------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             -------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC
Confidence                   011223333333  456777 788899999999999999998875                 888888  899


Q ss_pred             CCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCc-Ccc-cccccccCC------CCCCEEeCcCCcCCccCcc--ccc
Q 048289          204 NLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCN-FMG-SIPASLGNL------SQLTYLDLSYNNFSGHIPS--TLS  272 (920)
Q Consensus       204 ~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~  272 (920)
                      +|++|++++| .+.+.+| .++.+++|++|++++|. +++ .+|..++.+      ++|++|++++|.++ .+|.  .++
T Consensus       250 ~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~  327 (636)
T 4eco_A          250 DLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ  327 (636)
T ss_dssp             TCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred             CCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence            9999999998 6677777 78889999999999998 888 788888776      89999999999998 7787  899


Q ss_pred             CCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCc-CceeeccCccccccCCccccCCC--CC
Q 048289          273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHS-LVTIYLSYNSLNGTIPSGLFTSP--LL  349 (920)
Q Consensus       273 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L  349 (920)
                      .+++|++|++++|.++|.+| .+..+++|++|++++|++. .+|..+..+++ |++|++++|.++ .+|..+...+  +|
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  404 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM  404 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred             cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence            99999999999999998888 8888999999999999988 67778888888 999999999988 7888777654  89


Q ss_pred             CEEEccCCCCCCCchhhhh-------cCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCC-----
Q 048289          350 ESIDLRNNQLTGSISNSIS-------ELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVN-----  417 (920)
Q Consensus       350 ~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----  417 (920)
                      ++|++++|.+++..|..+.       .+++|++|++++|.++ .++...+..+++|++|++++|.++........     
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence            9999999999988888887       7788999999999988 67777788889999999999888733211111     


Q ss_pred             -CCCCcCceEeeeccCCcCCchhhh--cccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccc
Q 048289          418 -SSFPYLSMLSLSSCNISEFPDFLR--TQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLR  494 (920)
Q Consensus       418 -~~~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~  494 (920)
                       ..+++|++|++++|.++.+|..+.  .+++|+.|++++|++++ +|..+.  .+++|++|++++|+             
T Consensus       484 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~l~~L~~L~Ls~N~-------------  547 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL--NSSTLKGFGIRNQR-------------  547 (636)
T ss_dssp             CTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--GCSSCCEEECCSCB-------------
T ss_pred             ccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhh--cCCCCCEEECCCCc-------------
Confidence             012277777777777777777665  77777777777777776 666555  45555555554442             


Q ss_pred             eEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289          495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG  573 (920)
Q Consensus       495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~  573 (920)
                                             ++++|++.+.+|..+..+++|++|++++|++ +.+|..+. ..|+.|++++|.+..
T Consensus       548 -----------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          548 -----------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS  601 (636)
T ss_dssp             -----------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred             -----------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence                                   2355667777777777788888888888887 45665544 236666666665553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.2e-47  Score=458.31  Aligned_cols=495  Identities=19%  Similarity=0.229  Sum_probs=293.1

Q ss_pred             CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCC--ccc------------cceEecCCCCcEEEEECCCCCCcc
Q 048289            1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDC--CSW------------DGVTCDMMTGHVTGLDLSCSRLHG   66 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~   66 (920)
                      ||++||+++.+|  + |          ..-..|. +.+|  |.|            .||+|+. .++|+.|+|+++.+.|
T Consensus       273 ALl~~k~~l~~~--~-W----------~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          273 ALKAIWEALDGK--N-W----------RYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG  337 (876)
T ss_dssp             HHHHHHHHTTGG--G-C----------CCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred             HHHHHHHHcCCC--C-C----------CcCCCcc-cccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence            688999998654  1 1          1112221 2345  999            9999986 5899999999999999


Q ss_pred             cCCCCCCccCCCCCCEEEC-CCCCCCCCCCCCc-----------------------------------------------
Q 048289           67 SIPSDSSLFSLPHLQILNL-AFNDFNYSYISPG-----------------------------------------------   98 (920)
Q Consensus        67 ~~~~~~~l~~l~~L~~L~L-s~~~~~~~~i~~~-----------------------------------------------   98 (920)
                      .+|+  +++++++|++|+| ++|.+.+. .|..                                               
T Consensus       338 ~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~  414 (876)
T 4ecn_A          338 RVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM  414 (876)
T ss_dssp             EECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred             cCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence            9998  8999999999999 77765443 1110                                               


Q ss_pred             ----CCCCCCCCEEeCCC--CCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcc
Q 048289           99 ----FTRFPNLAHLNLSV--SSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP  172 (920)
Q Consensus        99 ----~~~l~~L~~L~Ls~--n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~  172 (920)
                          ......++.+.+..  |.+++ +|..++++++|++|+|++|.+...   .++.        ..+..+.+...+.+|
T Consensus       415 ~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~---~i~~--------~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYD---NIAV--------DWEDANSDYAKQYEN  482 (876)
T ss_dssp             CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGG---GBSS--------SCSCTTSHHHHHHTT
T ss_pred             cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCC---cccc--------cccccccccccccCC
Confidence                01112223333322  45554 566666666666666666644320   0000        000000011112366


Q ss_pred             hhcc--CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCc-CCC-Cc-------CCCCCCCEEEccCCcCcc
Q 048289          173 SFLT--NLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTS-VFP-KV-------NWSSPLRFMDLYGCNFMG  241 (920)
Q Consensus       173 ~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~-~~-------~~l~~L~~L~L~~n~~~~  241 (920)
                      ..++  ++++|++|++++|.+.+.+|..++++++|++|++++|..+++ .+| .+       ..+++|++|++++|.+. 
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence            6666  777888888888777777777777777777777777732554 333 22       23346666666666666 


Q ss_pred             cccc--cccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCC-CCEEECcCCCCCCccccc
Q 048289          242 SIPA--SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ-LSFLDFSNNQLNGPISSS  318 (920)
Q Consensus       242 ~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~  318 (920)
                      .+|.  .++++++|++|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence            5555  6666666666666666666 455 5666666666666666666 55555666666 666666666665 44555


Q ss_pred             ccCCCc--CceeeccCccccccCCccc---c--CCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhh
Q 048289          319 VSRLHS--LVTIYLSYNSLNGTIPSGL---F--TSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYM  391 (920)
Q Consensus       319 l~~l~~--L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  391 (920)
                      +..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.++                         .++...
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------------------------~lp~~~  692 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-------------------------KFPTEL  692 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------------------------SCCHHH
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-------------------------ccCHHH
Confidence            544433  6666666666654433211   1  2234555555555554                         333333


Q ss_pred             hhhcCCCceEEcCCCccccCccCCC------CCCCCcCceEeeeccCCcCCchhhh--cccccceeccCCCccCCCCCch
Q 048289          392 FAELKNLLGLDLSHNSLSLSTLLPV------NSSFPYLSMLSLSSCNISEFPDFLR--TQHRLQILDLSDNQIRGGIPNW  463 (920)
Q Consensus       392 ~~~l~~L~~L~Ls~n~l~~~~~~~~------~~~~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~Ls~n~l~~~~~~~  463 (920)
                      +..+++|+.|++++|.++.......      ...+++|++|++++|+++.+|..+.  .+++|+.|++++|++.+ +|..
T Consensus       693 ~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~  771 (876)
T 4ecn_A          693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ  771 (876)
T ss_dssp             HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence            4444444444444444431111000      1123477777777777777777776  77778888888887776 5665


Q ss_pred             hhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeC
Q 048289          464 IWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL  543 (920)
Q Consensus       464 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  543 (920)
                      +.  .+++|+.|++++|.                                    ++++|++.+.+|..+.++++|+.|++
T Consensus       772 l~--~L~~L~~L~Ls~N~------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          772 PL--NSSQLKAFGIRHQR------------------------------------DAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             GG--GCTTCCEEECCCCB------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             hh--cCCCCCEEECCCCC------------------------------------CcccccccccChHHHhcCCCCCEEEC
Confidence            55  55555555555543                                    34556777777888888888888888


Q ss_pred             CCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccc
Q 048289          544 SNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE  596 (920)
Q Consensus       544 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  596 (920)
                      ++|++ +.+|..+. ..|+.|++++|++....+..+.....+..+.|.+|...
T Consensus       814 s~N~L-~~Ip~~l~-~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          814 GSNDI-RKVDEKLT-PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CSSCC-CBCCSCCC-SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCCC-CccCHhhc-CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            88888 56666544 24666666666666555555544444444555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=436.97  Aligned_cols=513  Identities=21%  Similarity=0.241  Sum_probs=320.0

Q ss_pred             CEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccC
Q 048289          158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYG  236 (920)
Q Consensus       158 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~  236 (920)
                      +.++.++..++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++| .+.+..+ .+..+++|++|++++
T Consensus        10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A           10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcC
Confidence            45666665554 3344332  46888888888887666777788888888888887 5555544 577777777777777


Q ss_pred             CcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCcc
Q 048289          237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPI  315 (920)
Q Consensus       237 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~  315 (920)
                      |.+.+..|.+|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..|+++++|++|++++|++.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            77777666777777777777777777776555567777777777777777765 35777777777777777777777666


Q ss_pred             cccccCCCcC----ceeeccCccccccCCccccCCCCCCEEEccCCCCCC-CchhhhhcCCCCCEEEccCCcCCCcchhh
Q 048289          316 SSSVSRLHSL----VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG-SISNSISELVNLIDLSLSSNNLSGNVELY  390 (920)
Q Consensus       316 ~~~l~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  390 (920)
                      +..++.+++|    +++++++|.+.+..|..+... +|++|++++|.... ..+..+..++.++...+....+...    
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~----  240 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----  240 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC----
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc----
Confidence            6666666666    667777777665444444333 56666666664321 2334455555555444432221100    


Q ss_pred             hhhhcCCCceEEcCCCccccCccCCCCCCCC--cCceEeeecc-CCc-CCchhhhcccccceeccCCCccCCCCCchhhc
Q 048289          391 MFAELKNLLGLDLSHNSLSLSTLLPVNSSFP--YLSMLSLSSC-NIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN  466 (920)
Q Consensus       391 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~L~~L~l~~~-~l~-~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~  466 (920)
                           ..++.  +....         ...++  .++.+++.++ .+. .+|+.+..+++|+.|++++|.+. .+|..+. 
T Consensus       241 -----~~l~~--~~~~~---------~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~-  302 (570)
T 2z63_A          241 -----GNLEK--FDKSA---------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-  302 (570)
T ss_dssp             -----SSCEE--CCTTT---------TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-
T ss_pred             -----hhhhh--cchhh---------hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-
Confidence                 00000  00000         00011  2334444443 222 33455555555566666555554 2444333 


Q ss_pred             cCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCC
Q 048289          467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNN  546 (920)
Q Consensus       467 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  546 (920)
                       .. +|++|++++|.++.++...                     +++|+.|++++|.+.+..+.  ..+++         
T Consensus       303 -~~-~L~~L~l~~n~~~~l~~~~---------------------l~~L~~L~l~~n~~~~~~~~--~~~~~---------  348 (570)
T 2z63_A          303 -NF-GWQHLELVNCKFGQFPTLK---------------------LKSLKRLTFTSNKGGNAFSE--VDLPS---------  348 (570)
T ss_dssp             -CC-CCSEEEEESCBCSSCCBCB---------------------CSSCCEEEEESCBSCCBCCC--CBCTT---------
T ss_pred             -cC-CccEEeeccCcccccCccc---------------------ccccCEEeCcCCcccccccc--ccCCC---------
Confidence             22 3444444433333222222                     22333333333333322222  33344         


Q ss_pred             cCCCcCcccccccccceeecCCCcccccC--CccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCc
Q 048289          547 SLNGMIPPCLANSSLWFLDMRMNNFHGSI--PQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFP  624 (920)
Q Consensus       547 ~l~~~~p~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  624 (920)
                                    |+.|++++|.+++..  +..+..+++|+.|++++|.+++..+. +..+++|++|++++|++.+..|
T Consensus       349 --------------L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~  413 (570)
T 2z63_A          349 --------------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE  413 (570)
T ss_dssp             --------------CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT
T ss_pred             --------------CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc
Confidence                          444444444444332  45566777888888888888754444 7888888888888888877655


Q ss_pred             -hhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCc
Q 048289          625 -AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGN  703 (920)
Q Consensus       625 -~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  703 (920)
                       ..+.++++|++|++++|++.+..|..+  ..+                                               
T Consensus       414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l-----------------------------------------------  444 (570)
T 2z63_A          414 FSVFLSLRNLIYLDISHTHTRVAFNGIF--NGL-----------------------------------------------  444 (570)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEECCTTTT--TTC-----------------------------------------------
T ss_pred             hhhhhcCCCCCEEeCcCCcccccchhhh--hcC-----------------------------------------------
Confidence             457777777777777776665443322  112                                               


Q ss_pred             ceeeEEEEEccchhhhhhhcccccEEEcCCCcCC-CCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCC
Q 048289          704 EYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQ-GRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN  782 (920)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N  782 (920)
                                          +.|+.|++++|.++ +.+|..++.+++|+.|+|++|++++.+|..|+.+++|++|++++|
T Consensus       445 --------------------~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          445 --------------------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             --------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --------------------CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence                                34556666666665 456777888889999999999999888999999999999999999


Q ss_pred             cccccCcccccCCCCCCeeeccCCcccCCCCCC
Q 048289          783 KVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG  815 (920)
Q Consensus       783 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  815 (920)
                      ++++.+|..|.++++|++|++++|+++|.+|..
T Consensus       505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999988888999999999999999999988864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-44  Score=425.60  Aligned_cols=468  Identities=18%  Similarity=0.199  Sum_probs=267.5

Q ss_pred             CCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC
Q 048289          229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN  308 (920)
Q Consensus       229 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  308 (920)
                      |++|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+.+++|++|++++
T Consensus        28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  107 (549)
T 2z81_A           28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG  107 (549)
T ss_dssp             CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred             ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence            34444444444444444455555555555555555544445555555555555555555554444455555555555555


Q ss_pred             CCCCCc-ccccccCCCcCceeeccCccccccCC-ccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCc
Q 048289          309 NQLNGP-ISSSVSRLHSLVTIYLSYNSLNGTIP-SGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN  386 (920)
Q Consensus       309 n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  386 (920)
                      |.+.+. .+..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|++|+++.|.+. .
T Consensus       108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~  186 (549)
T 2z81_A          108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-F  186 (549)
T ss_dssp             CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-T
T ss_pred             CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-c
Confidence            555442 33445555555555555555322332 34555555555555555555555555555556666666655553 3


Q ss_pred             chhhhhhhcCCCceEEcCCCccccCccC--CCCCCCCcCceEeeeccCCcC-----CchhhhcccccceeccCCCccCCC
Q 048289          387 VELYMFAELKNLLGLDLSHNSLSLSTLL--PVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRLQILDLSDNQIRGG  459 (920)
Q Consensus       387 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~L~~L~l~~~~l~~-----lp~~l~~~~~L~~L~Ls~n~l~~~  459 (920)
                      ++...+..+++|++|++++|.++.....  .....+++|+.|++++|.++.     ++..+..+++|+.+++++|.+.+.
T Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~  266 (549)
T 2z81_A          187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL  266 (549)
T ss_dssp             HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred             cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence            3333444556666666666665543211  122345666777776665542     223334445555555555554421


Q ss_pred             CCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceeccc-----CcccccC
Q 048289          460 IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGE-----IPLSFCN  534 (920)
Q Consensus       460 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~  534 (920)
                      ..-                          ....            .......++++.|++.++.+...     ++..+..
T Consensus       267 ~~~--------------------------~~~~------------~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          267 GDF--------------------------NPSE------------SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             SCC--------------------------CCCT------------TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             ccc--------------------------cccc------------hhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence            100                          0000            00001122334444444333211     1111122


Q ss_pred             CCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccc-cCCCcccEEEccCCccccccC---ccccCCCCCc
Q 048289          535 MSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF-SKGSRLTILNLNDNQLEGSVP---LSLVNCSFLE  610 (920)
Q Consensus       535 l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~  610 (920)
                      ..+                       |+.|++++|.+. .+|..+ ..+++|++|++++|++++..|   ..+..+++|+
T Consensus       309 ~~~-----------------------L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~  364 (549)
T 2z81_A          309 LEK-----------------------VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ  364 (549)
T ss_dssp             STT-----------------------CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred             ccc-----------------------ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence            233                       555555555554 333333 456667777777777666543   2356667777


Q ss_pred             EEECCCCcccccCc--hhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCC
Q 048289          611 VLDVGNNRINGTFP--AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGN  688 (920)
Q Consensus       611 ~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~  688 (920)
                      +|++++|++++..+  ..+..+++|++|++++|+++ .+|..+  ..+++|++|++++|++++ +|...           
T Consensus       365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~~~~L~~L~Ls~N~l~~-l~~~~-----------  429 (549)
T 2z81_A          365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--QWPEKMRFLNLSSTGIRV-VKTCI-----------  429 (549)
T ss_dssp             EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC--CCCTTCCEEECTTSCCSC-CCTTS-----------
T ss_pred             EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh--cccccccEEECCCCCccc-ccchh-----------
Confidence            77777777765432  34666777777777777776 344433  346677788888877763 23111           


Q ss_pred             CCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCccc
Q 048289          689 NNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSL  768 (920)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~  768 (920)
                                                        ++.|++|||++|++++.+    +.+++|++|+|++|+++ .+|. .
T Consensus       430 ----------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~  469 (549)
T 2z81_A          430 ----------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A  469 (549)
T ss_dssp             ----------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred             ----------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence                                              245788999999998753    57889999999999998 5676 5


Q ss_pred             ccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCC
Q 048289          769 ENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ  814 (920)
Q Consensus       769 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  814 (920)
                      +.+++|++|||++|++++.+|..++++++|++|++++|++.|.+|.
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            7789999999999999999998899999999999999999988874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-44  Score=422.72  Aligned_cols=494  Identities=23%  Similarity=0.246  Sum_probs=288.9

Q ss_pred             CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCC
Q 048289           78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNEL  157 (920)
Q Consensus        78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L  157 (920)
                      +++++|+|++|.++.. .+..|..+++|++|+|++|.+++..|..++++++|++|++++|+                   
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-------------------   87 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------------------   87 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------------
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-------------------
Confidence            3566666666666542 33456666666666666666665555555556666666655553                   


Q ss_pred             CEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCC
Q 048289          158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGC  237 (920)
Q Consensus       158 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n  237 (920)
                               +++..+..|.++++|++|++++|.+.+..+..++.+++|++|++++| .+...                  
T Consensus        88 ---------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~------------------  139 (570)
T 2z63_A           88 ---------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSF------------------  139 (570)
T ss_dssp             ---------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCC------------------
T ss_pred             ---------CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-cccee------------------
Confidence                     33344556677777777777777776444445666666666666666 33321                  


Q ss_pred             cCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCC----CEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCC
Q 048289          238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL----RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG  313 (920)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (920)
                          .+|..++++++|++|++++|.+++..+..++.+++|    +.|++++|.+.+..|..+... +|+.|++++|....
T Consensus       140 ----~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~  214 (570)
T 2z63_A          140 ----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL  214 (570)
T ss_dssp             ----CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT
T ss_pred             ----cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccc
Confidence                234444444444444444444444444444444444    444444444444444433332 44444444442221


Q ss_pred             -cccccccCCCcCceeeccCcccccc-----C-CccccCCC--CCCEEEccCC-CCCCCchhhhhcCCCCCEEEccCCcC
Q 048289          314 -PISSSVSRLHSLVTIYLSYNSLNGT-----I-PSGLFTSP--LLESIDLRNN-QLTGSISNSISELVNLIDLSLSSNNL  383 (920)
Q Consensus       314 -~~~~~l~~l~~L~~L~L~~n~l~~~-----~-~~~l~~l~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l  383 (920)
                       ..+..+..++.++...+....+...     + ...+..++  .++.++++.+ .+.+..+..+..+++|+.|++++|.+
T Consensus       215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  294 (570)
T 2z63_A          215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI  294 (570)
T ss_dssp             THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred             cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence             1223333344443333322211100     0 00000000  1233333333 23333333333334444444433333


Q ss_pred             CCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCch
Q 048289          384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNW  463 (920)
Q Consensus       384 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~  463 (920)
                      .                         ..  ......+ +|++|++++|.+..+|.  ..+++|+.|++++|.+.+..+. 
T Consensus       295 ~-------------------------~l--~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-  343 (570)
T 2z63_A          295 E-------------------------RV--KDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-  343 (570)
T ss_dssp             C-------------------------SC--CBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred             h-------------------------hh--hhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-
Confidence            2                         11  1111222 45555555555554444  2445555555555555443332 


Q ss_pred             hhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeC
Q 048289          464 IWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNL  543 (920)
Q Consensus       464 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  543 (920)
                       .  .+++|++|++++|.++......                .....+++|++|++++|.+.+..+. +..+++|+.|++
T Consensus       344 -~--~~~~L~~L~l~~n~l~~~~~~~----------------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l  403 (570)
T 2z63_A          344 -V--DLPSLEFLDLSRNGLSFKGCCS----------------QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF  403 (570)
T ss_dssp             -C--BCTTCCEEECCSSCCBEEEEEE----------------HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEEC
T ss_pred             -c--cCCCCCEEeCcCCccCcccccc----------------ccccccCccCEEECCCCcccccccc-ccccCCCCEEEc
Confidence             1  3444555555544444321000                0001245677777777777765544 888999999999


Q ss_pred             CCCcCCCcCc-ccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccc-cccCccccCCCCCcEEECCCCccc
Q 048289          544 SNNSLNGMIP-PCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE-GSVPLSLVNCSFLEVLDVGNNRIN  620 (920)
Q Consensus       544 s~n~l~~~~p-~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~  620 (920)
                      ++|.+.+..| ..+...+ |+.|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|+++
T Consensus       404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  483 (570)
T ss_dssp             TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence            9999887766 4555666 999999999999989999999999999999999998 678999999999999999999999


Q ss_pred             ccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHH
Q 048289          621 GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRY  677 (920)
Q Consensus       621 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  677 (920)
                      +..|..+..+++|++|++++|++++..+..+  ..+++|+.|++++|++++.+|..+
T Consensus       484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             cCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEEecCCcccCCCcchH
Confidence            9889999999999999999999998766554  568899999999999999988644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-43  Score=416.21  Aligned_cols=492  Identities=23%  Similarity=0.271  Sum_probs=300.4

Q ss_pred             CccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCccc
Q 048289           39 CCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ  118 (920)
Q Consensus        39 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~  118 (920)
                      .|.|.|+ |+.          +++.+. .+|.  .+.  ++|++|+|++|.+++. .|..|+.+++|++|+|++|.+++.
T Consensus         3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SCDASGV-CDG----------RSRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EECTTSE-EEC----------TTSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred             cCCCCce-EEC----------CCCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence            5999998 863          345554 5565  333  7899999999998864 567799999999999999999988


Q ss_pred             CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCC-CcchhccCCCCCCEEEccCCcCCCCCC-
Q 048289          119 IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY-EVPSFLTNLSSLTSLDLGNCGLQGSIP-  196 (920)
Q Consensus       119 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~-  196 (920)
                      .|..++++++|++|++++|++...    .+..+.++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| 
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCSC----CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             ChhhccccccCCEEECCCCccCcc----CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence            888899999999999999976542    23345667777777777776665 244566666677777776666333333 


Q ss_pred             cccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccC--c-cccc
Q 048289          197 ENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI--P-STLS  272 (920)
Q Consensus       197 ~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~  272 (920)
                      ..+..+++|++|++++| .+.+..+ .++.+++|++|++++|.+.......+..+++|++|++++|.+++..  | ....
T Consensus       142 ~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  220 (549)
T 2z81_A          142 IDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE  220 (549)
T ss_dssp             TTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred             hhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhh
Confidence            45666666666666666 4444444 5566666666666666554322222344566666666666665431  1 1123


Q ss_pred             CCCCCCEEEccCCcCcccchh----hhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCC
Q 048289          273 NLQQLRHLDLSNNKFTGQIPC----IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL  348 (920)
Q Consensus       273 ~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  348 (920)
                      .+++|+.|++++|.+++..+.    .+..+++|+.+++++|.+.+......                  .....+..+++
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~  282 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGK  282 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTT
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc------------------cchhhhhhhcc
Confidence            355666666666665543332    23345556666666555443210000                  00111223344


Q ss_pred             CCEEEccCCCCCCC-----chhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCcc--CCCCCCCC
Q 048289          349 LESIDLRNNQLTGS-----ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTL--LPVNSSFP  421 (920)
Q Consensus       349 L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~  421 (920)
                      |+.|++.++.+...     .+..+...++|+.|++++|.+. .++...+..+++|++|++++|.++....  ......++
T Consensus       283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~  361 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP  361 (549)
T ss_dssp             CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred             cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence            44555444443321     1122233455666666666554 4444444556666666666665543211  11233556


Q ss_pred             cCceEeeeccCCcCCc---hhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEec
Q 048289          422 YLSMLSLSSCNISEFP---DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDL  498 (920)
Q Consensus       422 ~L~~L~l~~~~l~~lp---~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L  498 (920)
                      +|++|++++|.++.++   ..+..+++|++|++++|+++ .+|..+.  .+++|++|++++|.++.+...          
T Consensus       362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--~~~~L~~L~Ls~N~l~~l~~~----------  428 (549)
T 2z81_A          362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ--WPEKMRFLNLSSTGIRVVKTC----------  428 (549)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC--CCTTCCEEECTTSCCSCCCTT----------
T ss_pred             cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc--ccccccEEECCCCCcccccch----------
Confidence            6777777777776654   34677778888888888777 4555544  455666666666665544332          


Q ss_pred             ccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCcc
Q 048289          499 RSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQT  578 (920)
Q Consensus       499 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~  578 (920)
                                 .+++|++|++++|++++..    ..+++|++|++++|+++ .+|.......|+.|++++|++++..|..
T Consensus       429 -----------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          429 -----------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             -----------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTG
T ss_pred             -----------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHH
Confidence                       2345666666666665532    45677888888888887 4555322223888888888888888888


Q ss_pred             ccCCCcccEEEccCCccccccC
Q 048289          579 FSKGSRLTILNLNDNQLEGSVP  600 (920)
Q Consensus       579 ~~~l~~L~~L~L~~N~l~~~~p  600 (920)
                      +..+++|+.|++++|++++..|
T Consensus       493 ~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          493 FDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCcccCEEEecCCCccCCCc
Confidence            8888999999999998877655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-44  Score=425.11  Aligned_cols=444  Identities=20%  Similarity=0.284  Sum_probs=259.9

Q ss_pred             CCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCC------c------cCcccccCCCCCCEEEccCCcCcccchhh
Q 048289          227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFS------G------HIPSTLSNLQQLRHLDLSNNKFTGQIPCI  294 (920)
Q Consensus       227 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  294 (920)
                      .+++.|+|+++.+.|.+|.+++++++|++|++++|.+.      +      .+|...  +..|+ ++++++.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            35677777777888888888888888888888887651      1      122222  23344 555555555555544


Q ss_pred             hhcC-------------------CCCCEEECc--CCCCCCcccccccCCCcCceeeccCcccccc---------------
Q 048289          295 FANL-------------------TQLSFLDFS--NNQLNGPISSSVSRLHSLVTIYLSYNSLNGT---------------  338 (920)
Q Consensus       295 l~~l-------------------~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---------------  338 (920)
                      +..+                   ..++.+.+.  .|++++ +|..++++++|++|++++|.+++.               
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence            3310                   011111111  345555 566666666666666666666653               


Q ss_pred             --CCcccc--CCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCc-CCC-cchhhhhhhcCCCceEEcCCCccccCc
Q 048289          339 --IPSGLF--TSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN-LSG-NVELYMFAELKNLLGLDLSHNSLSLST  412 (920)
Q Consensus       339 --~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~  412 (920)
                        +|..+.  .+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .++.. +..+.                
T Consensus       237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~----------------  299 (636)
T 4eco_A          237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALA----------------  299 (636)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHH----------------
T ss_pred             ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhh----------------
Confidence              666666  66666666666666666666666666666666666665 554 33221 11110                


Q ss_pred             cCCCCCCCCcCceEeeeccCCcCCch--hhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCC
Q 048289          413 LLPVNSSFPYLSMLSLSSCNISEFPD--FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPW  490 (920)
Q Consensus       413 ~~~~~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  490 (920)
                         ....+++|++|++++|.++.+|.  .+..+++|+.|++++|++.|.+| .+.  .                      
T Consensus       300 ---~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~----------------------  351 (636)
T 4eco_A          300 ---DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--S----------------------  351 (636)
T ss_dssp             ---HSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--E----------------------
T ss_pred             ---ccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC--C----------------------
Confidence               00011222222222333333444  44444444444444444443333 211  1                      


Q ss_pred             cccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCC-cCeEeCCCCcCCCcCcccccccccceeecCCC
Q 048289          491 KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSS-IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMN  569 (920)
Q Consensus       491 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n  569 (920)
                                          +++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+....         
T Consensus       352 --------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~---------  400 (636)
T 4eco_A          352 --------------------EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS---------  400 (636)
T ss_dssp             --------------------EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC---------
T ss_pred             --------------------CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc---------
Confidence                                124455555555555 55666666666 777777766666 4454443321         


Q ss_pred             cccccCCccccCCCcccEEEccCCccccccCcccc-------CCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCce
Q 048289          570 NFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLV-------NCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR  642 (920)
Q Consensus       570 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  642 (920)
                                  +++|+.|++++|++++..|..+.       .+++|++|++++|+++...+..+..+++|++|++++|+
T Consensus       401 ------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          401 ------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             ------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             ------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence                        12455555555555554444444       44555555555555553333334445555555555555


Q ss_pred             eecccCCCccc------CCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccch
Q 048289          643 FHGPITYSVTR------FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVN  716 (920)
Q Consensus       643 l~~~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  716 (920)
                      ++ .+|.....      ..+++|+.|++++|+++ .+|..++.                                     
T Consensus       469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------------------  509 (636)
T 4eco_A          469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------------------------------------  509 (636)
T ss_dssp             CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------------------------------------
T ss_pred             CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------------------------------------
Confidence            55 33332211      11237888888888887 56644310                                     


Q ss_pred             hhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEec------cCccccCCcCcccccccCCccccCCCCcccccCcc
Q 048289          717 MEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNF------SHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPW  790 (920)
Q Consensus       717 ~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  790 (920)
                          ..++.|+.|+|++|++++ +|..++.+++|+.|+|      ++|++.+.+|..++++++|++|||++|++ +.+|.
T Consensus       510 ----~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          510 ----TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             ----TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             ----ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence                014567888999999887 8888888999999988      56888999999999999999999999999 78888


Q ss_pred             cccCCCCCCeeeccCCccc
Q 048289          791 QLTSLNFLQVLNLSQNQLV  809 (920)
Q Consensus       791 ~l~~l~~L~~L~ls~N~l~  809 (920)
                      .+.  ++|++||+++|++.
T Consensus       584 ~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          584 KIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCC--TTCCEEECCSCTTC
T ss_pred             hHh--CcCCEEECcCCCCc
Confidence            766  79999999999776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.7e-41  Score=406.65  Aligned_cols=526  Identities=23%  Similarity=0.252  Sum_probs=319.4

Q ss_pred             EEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCC
Q 048289          159 ELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGC  237 (920)
Q Consensus       159 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n  237 (920)
                      +.+.++-+++ .+|..+.  +++++|||++|.+++..+..|.++++|++|+|++| .+.+..+ .|..+++|++|+|++|
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC
Confidence            4444444444 3343332  35677777777776555566777777777777776 4554444 4666666666666666


Q ss_pred             cCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCccc
Q 048289          238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPIS  316 (920)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~  316 (920)
                      ++++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            6665555556666666666666666665555556666666666666666653 245555666666666666666665555


Q ss_pred             ccccCCCcCc----eeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhh
Q 048289          317 SSVSRLHSLV----TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF  392 (920)
Q Consensus       317 ~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  392 (920)
                      ..+..+.+++    .++++.|.+.. ++........++                        .+++.+|..........+
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~------------------------~l~l~~n~~~~~~~~~~~  245 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH------------------------KLTLRNNFDSLNVMKTCI  245 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEE------------------------EEEEESCCSSHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhcccCcccc-cCcccccchhhh------------------------hhhhhcccccccccchhh
Confidence            5544433322    34444444432 222222223334                        444444433333333344


Q ss_pred             hhcCCCceEEcCCCccccCcc-----CCCCCCCCcCceEeeeccCCc----CCchhhhcccccceeccCCCccCCCCCch
Q 048289          393 AELKNLLGLDLSHNSLSLSTL-----LPVNSSFPYLSMLSLSSCNIS----EFPDFLRTQHRLQILDLSDNQIRGGIPNW  463 (920)
Q Consensus       393 ~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~~~L~~L~l~~~~l~----~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~  463 (920)
                      ..+..++...+..+.......     .........+....+..+...    .++..+.....++.+++.++.+       
T Consensus       246 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------  318 (635)
T 4g8a_A          246 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-------  318 (635)
T ss_dssp             HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-------
T ss_pred             cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-------
Confidence            444444443332221111000     001111222333333222111    1222333334444444444433       


Q ss_pred             hhccCCCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEe
Q 048289          464 IWNVGKDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN  542 (920)
Q Consensus       464 ~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  542 (920)
                                         ..+.. ....+++.|++.+|.+.+..+.....++.+++.+|.+....  ....+++|+.++
T Consensus       319 -------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~  377 (635)
T 4g8a_A          319 -------------------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLD  377 (635)
T ss_dssp             -------------------EECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEE
T ss_pred             -------------------ccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc--ccccccccccch
Confidence                               33322 12234555555555555444444556666666666554322  344677788888


Q ss_pred             CCCCcCCCc--Ccccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCCc
Q 048289          543 LSNNSLNGM--IPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNNR  618 (920)
Q Consensus       543 Ls~n~l~~~--~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~  618 (920)
                      +++|.+...  .+....... |+.+++..|.+.. .+..+..+++|+.+++.+|......+ ..+..+++++.++++.|.
T Consensus       378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~  456 (635)
T 4g8a_A          378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  456 (635)
T ss_dssp             CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred             hhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            888777532  333333333 8888888887764 34567788999999999888766554 567889999999999999


Q ss_pred             ccccCchhhcCCCCCCEEEccCceeecc-cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcc
Q 048289          619 INGTFPAWLGALSELQVLILRSNRFHGP-ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM  697 (920)
Q Consensus       619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~  697 (920)
                      +.+..+..+..+++|++|++++|++... .|..+                           .                  
T Consensus       457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~---------------------------~------------------  491 (635)
T 4g8a_A          457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---------------------------T------------------  491 (635)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---------------------------T------------------
T ss_pred             cccccccccccchhhhhhhhhhcccccccCchhh---------------------------h------------------
Confidence            9988888888888888888888765432 22111                           1                  


Q ss_pred             eeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccc
Q 048289          698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL  777 (920)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  777 (920)
                                              .++.|++|||++|++++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|
T Consensus       492 ------------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          492 ------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  547 (635)
T ss_dssp             ------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred             ------------------------hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence                                    13456788888888888888889999999999999999999999999999999999


Q ss_pred             cCCCCcccccCcccccCC-CCCCeeeccCCcccCC
Q 048289          778 DLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQLVGP  811 (920)
Q Consensus       778 ~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~  811 (920)
                      ||++|+|++.+|..|..+ ++|++|++++|++...
T Consensus       548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            999999999999999988 6899999999998753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.5e-43  Score=406.33  Aligned_cols=452  Identities=21%  Similarity=0.209  Sum_probs=249.5

Q ss_pred             EEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCcc
Q 048289          255 YLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS  334 (920)
Q Consensus       255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  334 (920)
                      +|++++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|+
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            4455555554 2343333  455555555555554444555555555555555555555555555555555555555555


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCCC-CchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCC--ceEEcCCCccccC
Q 048289          335 LNGTIPSGLFTSPLLESIDLRNNQLTG-SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNL--LGLDLSHNSLSLS  411 (920)
Q Consensus       335 l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~Ls~n~l~~~  411 (920)
                      ++ .+|..  .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++    ..+..+++|  ++|++++|.+...
T Consensus        81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccc
Confidence            55 34443  55666666666666665 345666666777777777666653    223444444  4444444443100


Q ss_pred             ccCCCCCCCCcCceEeeeccCCcCCchhhhccc-ccceeccCCCccCCCCCchhhccCCCCCcEEECCCCc-------Cc
Q 048289          412 TLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH-RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF-------LT  483 (920)
Q Consensus       412 ~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------l~  483 (920)
                                            ...|..+..+. ....+++++|.+.+.++..... .+++|+.+++++|.       +.
T Consensus       154 ----------------------~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~  210 (520)
T 2z7x_B          154 ----------------------KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK-TVANLELSNIKCVLEDNKCSYFL  210 (520)
T ss_dssp             ----------------------SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT-TCSEEEECCEEECCSTTTTHHHH
T ss_pred             ----------------------ccccccccccccceEEEEeccCcchhhhhhhhhh-cccceeeccccccccccccceee
Confidence                                  12344444433 3445677888877666554321 56666666666664       21


Q ss_pred             Cc--cCCCCcccceEecccCcCCCCCCC------CCCCCceEEecCceecccCcccc-----cCCCCcCeEeCCCCcCCC
Q 048289          484 GI--ELLPWKNLRYLDLRSNSLKGSIPF------LPPSLNFISVSNNKLSGEIPLSF-----CNMSSIFYVNLSNNSLNG  550 (920)
Q Consensus       484 ~~--~~~~~~~L~~L~L~~n~l~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~  550 (920)
                      +.  ....+++|+.|++++|.+.+..+.      ..++|++|++++|++++.+|..+     ..++.|+.+++++|.+  
T Consensus       211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--  288 (520)
T 2z7x_B          211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--  288 (520)
T ss_dssp             HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred             cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence            11  112334455555555544321110      01245555555555554444444     4444444445444444  


Q ss_pred             cCcccccccccceeecCCCcccccCCccccCC---CcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh
Q 048289          551 MIPPCLANSSLWFLDMRMNNFHGSIPQTFSKG---SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL  627 (920)
Q Consensus       551 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l  627 (920)
                      .+|.                      ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++..|..+
T Consensus       289 ~~p~----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          289 GFPQ----------------------SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             CSCT----------------------HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             ecch----------------------hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence            2221                      222221   34555555555543211  11345555555555555555555555


Q ss_pred             cCCCCCCEEEccCceeec--ccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289          628 GALSELQVLILRSNRFHG--PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY  705 (920)
Q Consensus       628 ~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  705 (920)
                      ..+++|++|++++|++.+  .+|..+  ..+++|+.|++++|++++.+|...+.                          
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~--------------------------  396 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQNSVSYDEKKGDCS--------------------------  396 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSSCCBCCGGGCSCC--------------------------
T ss_pred             ccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCCcCCcccccchhc--------------------------
Confidence            555555555555555553  222211  34556666666666666545532111                          


Q ss_pred             eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289          706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA  785 (920)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  785 (920)
                                      .++.|+.|++++|.+++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus       397 ----------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          397 ----------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             ----------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ----------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence                            134567788888888777776654  68888888888888 67777778888888888888888


Q ss_pred             ccCcc-cccCCCCCCeeeccCCcccCCCC
Q 048289          786 GEIPW-QLTSLNFLQVLNLSQNQLVGPIP  813 (920)
Q Consensus       786 g~ip~-~l~~l~~L~~L~ls~N~l~g~iP  813 (920)
                      + +|. .+..+++|++|++++|++++..|
T Consensus       458 ~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          458 S-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             c-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            4 554 48888889999999998887655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2e-42  Score=403.68  Aligned_cols=456  Identities=21%  Similarity=0.197  Sum_probs=262.3

Q ss_pred             CEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCC
Q 048289          206 QNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN  285 (920)
Q Consensus       206 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  285 (920)
                      ++|++++| .++.....+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+.+++|++|++++|
T Consensus         3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            35566665 3443222232  55555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCcccchhhhhcCCCCCEEECcCCCCCC-cccccccCCCcCceeeccCccccccCCccccCCCCC--CEEEccCCCC--C
Q 048289          286 KFTGQIPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL--ESIDLRNNQL--T  360 (920)
Q Consensus       286 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~  360 (920)
                      .++ .+|..  .+++|++|++++|++++ .+|..++.+++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            555 33333  45555555555555554 244555555555555555555543   223334444  5555555555  4


Q ss_pred             CCchhhhhcCC-CCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccC-------
Q 048289          361 GSISNSISELV-NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN-------  432 (920)
Q Consensus       361 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~-------  432 (920)
                      +..|..+..+. +...+++++|.+.+.+....+.                         .+++|+.+++++|.       
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~-------------------------~l~~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK-------------------------TVANLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT-------------------------TCSEEEECCEEECCSTTTTHH
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhh-------------------------cccceeeccccccccccccce
Confidence            44444443333 1223344444444333333333                         34444444444443       


Q ss_pred             CcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---
Q 048289          433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---  509 (920)
Q Consensus       433 l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---  509 (920)
                      +....+.+..+++|+.|++++|.+.+..+..+..                    ....++|++|++++|++.+.+|.   
T Consensus       209 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------------------~~~~~~L~~L~l~~n~l~~~~p~~~~  268 (520)
T 2z7x_B          209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--------------------LVWHTTVWYFSISNVKLQGQLDFRDF  268 (520)
T ss_dssp             HHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH--------------------HHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred             eecchhhhccccchhhccccccccCHHHHHHHHH--------------------HhhhCcccEEEeecccccCccccchh
Confidence            1111123444455555555554443322111100                    00012444555555554443332   


Q ss_pred             -----CCCCCceEEecCceecccCc-ccccCC---CCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCcccc
Q 048289          510 -----LPPSLNFISVSNNKLSGEIP-LSFCNM---SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFS  580 (920)
Q Consensus       510 -----~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~  580 (920)
                           .+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..                         .+.
T Consensus       269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------------~~~  321 (520)
T 2z7x_B          269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-------------------------CPS  321 (520)
T ss_dssp             CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------------------------CCS
T ss_pred             hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-------------------------chh
Confidence                 245788899999998  455 444443   56778888777765321                         013


Q ss_pred             CCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccc--cCchhhcCCCCCCEEEccCceeecccCCCcccCCCCC
Q 048289          581 KGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRING--TFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK  658 (920)
Q Consensus       581 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  658 (920)
                      .+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++.+.+|... ...+++
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~  400 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKS  400 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTT
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccCcc
Confidence            45566666666666666666666666777777777777665  445666677777777777777766444331 134677


Q ss_pred             CcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCC
Q 048289          659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG  738 (920)
Q Consensus       659 L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~  738 (920)
                      |+.|++++|++++.+|...                                             .+.|+.||+++|+++ 
T Consensus       401 L~~L~Ls~N~l~~~~~~~l---------------------------------------------~~~L~~L~Ls~N~l~-  434 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCL---------------------------------------------PPRIKVLDLHSNKIK-  434 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSC---------------------------------------------CTTCCEEECCSSCCC-
T ss_pred             CCEEECcCCCCCcchhhhh---------------------------------------------cccCCEEECCCCccc-
Confidence            8888888888876555321                                             145789999999998 


Q ss_pred             CchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289          739 RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP  789 (920)
Q Consensus       739 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  789 (920)
                      .+|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus       435 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            788888899999999999999996444459999999999999999998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.1e-42  Score=415.02  Aligned_cols=225  Identities=18%  Similarity=0.196  Sum_probs=119.6

Q ss_pred             CCCCEEEccCCcCcccccccccCCCCCCEEeC-cCCcCCccCccccc---------------------------------
Q 048289          227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDL-SYNNFSGHIPSTLS---------------------------------  272 (920)
Q Consensus       227 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~~p~~l~---------------------------------  272 (920)
                      .++..|+|+++.+.|.+|.+++++++|++|+| ++|.+.|..|....                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46777888888888888888888888888888 77766554221100                                 


Q ss_pred             ------------------CCCCCCEEEcc--CCcCcccchhhhhcCCCCCEEECcCCCCCCc-ccccccCCCcCceeecc
Q 048289          273 ------------------NLQQLRHLDLS--NNKFTGQIPCIFANLTQLSFLDFSNNQLNGP-ISSSVSRLHSLVTIYLS  331 (920)
Q Consensus       273 ------------------~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~  331 (920)
                                        ....++.+.+.  .|.+++ +|..++++++|++|++++|++++. ++..+        +..+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~--------~~~s  473 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW--------EDAN  473 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC--------SCTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc--------cccc
Confidence                              01111222222  134443 444455555555555555555441 00000        0000


Q ss_pred             CccccccCCcccc--CCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCc-CCC-cchhhhhh-------hcCCCce
Q 048289          332 YNSLNGTIPSGLF--TSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNN-LSG-NVELYMFA-------ELKNLLG  400 (920)
Q Consensus       332 ~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------~l~~L~~  400 (920)
                      .|.+.+.+|..+.  .+++|++|+|++|.+.+.+|..+..+++|+.|++++|+ +++ .++. .+.       .+++|+.
T Consensus       474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~  552 (876)
T 4ecn_A          474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQI  552 (876)
T ss_dssp             SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCE
T ss_pred             cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccE
Confidence            0000012555554  55666666666666555556556666666666666665 554 2322 122       2336666


Q ss_pred             EEcCCCccccCccCC--CCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhh
Q 048289          401 LDLSHNSLSLSTLLP--VNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIW  465 (920)
Q Consensus       401 L~Ls~n~l~~~~~~~--~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~  465 (920)
                      |++++|.++  .+..  ....+++|++|++++|.++.+| .+..+++|+.|++++|.+. .+|..+.
T Consensus       553 L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~  615 (876)
T 4ecn_A          553 FYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC  615 (876)
T ss_dssp             EECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSC
T ss_pred             EEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHh
Confidence            666666655  2222  2445666666666666666666 6677777777777777776 5555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.3e-40  Score=395.53  Aligned_cols=562  Identities=22%  Similarity=0.197  Sum_probs=331.0

Q ss_pred             cccCCCCCCCCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCE
Q 048289           28 SKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAH  107 (920)
Q Consensus        28 ~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~  107 (920)
                      ..+++|+.+. +..|+...|....   +..+-++.++. .+|.  .+.  +++++|||++|.++.. .+.+|.++++|++
T Consensus        11 ~~~~~~~~~~-p~~~~~c~~~~~~---~~~~c~~~~l~-~vP~--~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~   80 (635)
T 4g8a_A           11 DKLAAANSSI-PESWEPCVEVVPN---ITYQCMELNFY-KIPD--NLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQV   80 (635)
T ss_dssp             ---------------CCSEEEETT---TEEECTTSCCS-SCCS--SSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred             chhhcccCCC-CCCCCCccccCCC---CEEECCCCCcC-ccCC--CCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCE
Confidence            3677886543 3345543333211   12355555555 4554  332  4688888888888763 3456888888888


Q ss_pred             EeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEcc
Q 048289          108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLG  187 (920)
Q Consensus       108 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls  187 (920)
                      |+|++|.+++..|.+|.++++|++|+|++|++..                            ..+..|.++++|++|+++
T Consensus        81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~----------------------------l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----------------------------LALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----------------------------ECGGGGTTCTTCCEEECT
T ss_pred             EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC----------------------------CCHHHhcCCCCCCEEECC
Confidence            8888888886666678888888888888885543                            334456666666666666


Q ss_pred             CCcCCCCCCcccCCCCCCCEEEccCCCCCCc-CCC-CcCCCCCCCEEEccCCcCcccccccccCCCC----CCEEeCcCC
Q 048289          188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTS-VFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQ----LTYLDLSYN  261 (920)
Q Consensus       188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~L~~n  261 (920)
                      +|.+++..+..|+++++|++|++++| .+.. ..+ .++.+++|++|++++|.+.+..+..+..+.+    ...++++.|
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            66666544455666666666666666 3322 233 4455666666666666666665665554433    336777777


Q ss_pred             cCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCC------CCcccccccCCCcCceeeccCcc
Q 048289          262 NFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQL------NGPISSSVSRLHSLVTIYLSYNS  334 (920)
Q Consensus       262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~L~~L~L~~n~  334 (920)
                      .+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+..      .......+..+..+....+..+.
T Consensus       212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            7765444333 33456667777765542 2344566667766655543322      11222233333444444433322


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccC
Q 048289          335 LNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLL  414 (920)
Q Consensus       335 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  414 (920)
                      .....                     ......+....+++.+.+..+.+...   ..+.....++.|++.+|.+....  
T Consensus       291 ~~~~~---------------------~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~--  344 (635)
T 4g8a_A          291 LDYYL---------------------DGIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFGQFP--  344 (635)
T ss_dssp             CCSCE---------------------EECTTTTGGGTTCSEEEEESCEEEEC---GGGGSCCCCSEEEEESCEESSCC--
T ss_pred             hcccc---------------------cchhhhhhhhcccccccccccccccc---cccccchhhhhhhcccccccCcC--
Confidence            21100                     01111233334444444444433211   11223334444444444432211  


Q ss_pred             CCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCC--CCchhhccCCCCCcEEECCCCcCcCccCCCCcc
Q 048289          415 PVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGG--IPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKN  492 (920)
Q Consensus       415 ~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  492 (920)
                        ...++.|+.+.+..+.....+. ...+++|+.+++++|.+...  .+....  ...+|+.+++..+.+......    
T Consensus       345 --~~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~----  415 (635)
T 4g8a_A          345 --TLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSN----  415 (635)
T ss_dssp             --CCBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSC----
T ss_pred             --cccchhhhhcccccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhcccccccccccc----
Confidence              1123445555555554433221 22345555555555554321  122222  334444444444433222110    


Q ss_pred             cceEecccCcCCCCCCCCCCCCceEEecCceecccCc-ccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc
Q 048289          493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN  570 (920)
Q Consensus       493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~  570 (920)
                                     ....++|+.++++.|......+ ..+..+++++.++++.|.+.+..+..+...+ ++.|++++|+
T Consensus       416 ---------------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~  480 (635)
T 4g8a_A          416 ---------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  480 (635)
T ss_dssp             ---------------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             ---------------ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence                           1124566667776666554443 4577788888888888888887777777766 8889998887


Q ss_pred             c-cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289          571 F-HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY  649 (920)
Q Consensus       571 l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  649 (920)
                      + .+..|..|..+++|++|+|++|++++..|.+|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|.
T Consensus       481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            4 446788899999999999999999999999999999999999999999998899999999999999999999988877


Q ss_pred             CcccCCC-CCCcEEEccCCcCcCCCchHHHhhh
Q 048289          650 SVTRFPF-PKLRILDLSNNEFTGVLPTRYFQNF  681 (920)
Q Consensus       650 ~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l  681 (920)
                      .+  ..+ ++|+.|++++|++.+.....+|..|
T Consensus       561 ~l--~~l~~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          561 EL--QHFPSSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             CT--TCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             HH--HhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence            66  334 6899999999999998876666544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-40  Score=388.11  Aligned_cols=226  Identities=20%  Similarity=0.268  Sum_probs=137.1

Q ss_pred             CCceEEecCceecccCcccc-----cCCCCcCeEeCCCCcCCCcCcc-ccc----ccccceeecCCCcccccCCccccCC
Q 048289          513 SLNFISVSNNKLSGEIPLSF-----CNMSSIFYVNLSNNSLNGMIPP-CLA----NSSLWFLDMRMNNFHGSIPQTFSKG  582 (920)
Q Consensus       513 ~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p~-~~~----~~~L~~L~L~~n~l~~~~~~~~~~l  582 (920)
                      +|++|++++|.+++.+|..+     ..++.|+.++++.+.+  .+|. .+.    ...|+.|++++|.+....  ....+
T Consensus       277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l  352 (562)
T 3a79_B          277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP  352 (562)
T ss_dssp             SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred             cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence            66777777777777777666     5666666666666665  3342 111    122666666666554221  11345


Q ss_pred             CcccEEEccCCccccccCccccCCCCCcEEECCCCccccc--CchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCc
Q 048289          583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT--FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLR  660 (920)
Q Consensus       583 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  660 (920)
                      ++|++|++++|++++..|..+.++++|++|++++|++++.  +|..+.+++                          +|+
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~--------------------------~L~  406 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS--------------------------SLE  406 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT--------------------------TCC
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC--------------------------CCC
Confidence            5555566666555555555555555555555555555542  233444444                          455


Q ss_pred             EEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCc
Q 048289          661 ILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRI  740 (920)
Q Consensus       661 ~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~i  740 (920)
                      .|++++|++++.+|...+..                                          ++.|+.|++++|.+++.+
T Consensus       407 ~L~l~~N~l~~~~~~~~~~~------------------------------------------l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          407 TLDVSLNSLNSHAYDRTCAW------------------------------------------AESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             EEECTTSCCBSCCSSCCCCC------------------------------------------CTTCCEEECCSSCCCGGG
T ss_pred             EEECCCCcCCCccChhhhcC------------------------------------------cccCCEEECCCCCCCcch
Confidence            55555555554444321111                                          244567777777777666


Q ss_pred             hhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCccc-ccCCCCCCeeeccCCcccCCCCC
Q 048289          741 PEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ-LTSLNFLQVLNLSQNQLVGPIPQ  814 (920)
Q Consensus       741 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  814 (920)
                      |..+.  ++|+.|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|++|++++|++.+..|.
T Consensus       445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            65544  67888888888887 566666688888888888888884 4444 78888888888888888876663

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.9e-39  Score=378.89  Aligned_cols=464  Identities=22%  Similarity=0.258  Sum_probs=321.5

Q ss_pred             CCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 048289          178 LSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL  256 (920)
Q Consensus       178 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  256 (920)
                      +...++++++++.++ .+|..+.  ++|++|++++| .+.+..+ .+..+++|++|++++|.+++..|.+|.++++|++|
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            344588899988888 4776554  78888888888 5665554 77778888888888888877777778888888888


Q ss_pred             eCcCCcCCccCcccccCCCCCCEEEccCCcCcc-cchhhhhcCCCCCEEECcCCCCCCcccccccCCCcC--ceeeccCc
Q 048289          257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSL--VTIYLSYN  333 (920)
Q Consensus       257 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n  333 (920)
                      ++++|.++ .+|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|++.+.   .+..+++|  ++|++++|
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            88888877 34544  67788888888888775 3456777788888888888777653   33444444  77777777


Q ss_pred             cc--cccCCccccCCC-CCCEEEccCCCCCCCchh-hhhcCCCCCEEEccCCcCCCc---chhhhhhhcCCCceEEcCCC
Q 048289          334 SL--NGTIPSGLFTSP-LLESIDLRNNQLTGSISN-SISELVNLIDLSLSSNNLSGN---VELYMFAELKNLLGLDLSHN  406 (920)
Q Consensus       334 ~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n  406 (920)
                      .+  .+..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.....   .....+..+++|+.++++++
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence            77  666666665543 111446666666554332 344556666666666642110   01123344455555554444


Q ss_pred             ccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhcc---CCCCCcEEECCCCcCc
Q 048289          407 SLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNV---GKDTLNHLNLSHNFLT  483 (920)
Q Consensus       407 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~---~~~~L~~L~Ls~n~l~  483 (920)
                      .+..                    +.+..++..+. .++|++|++++|.+.+.+|..++..   .++.|+.+++..+.+ 
T Consensus       260 ~l~~--------------------~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-  317 (562)
T 3a79_B          260 ETTW--------------------KCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-  317 (562)
T ss_dssp             EECH--------------------HHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-
T ss_pred             cCcH--------------------HHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhccccee-
Confidence            3321                    11112222222 2367777777777777676655211   333333344444443 


Q ss_pred             CccCC------CCcccceEecccCcCCCCCC-CCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCc--Ccc
Q 048289          484 GIELL------PWKNLRYLDLRSNSLKGSIP-FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM--IPP  554 (920)
Q Consensus       484 ~~~~~------~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~  554 (920)
                      .++..      ...+|++|++++|.+..... ..+++|++|++++|++++..|..+.++++|++|++++|++++.  +|.
T Consensus       318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  397 (562)
T 3a79_B          318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL  397 (562)
T ss_dssp             SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred             ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence            11100      11458888888888765443 5578899999999999998999999999999999999999863  345


Q ss_pred             cccccc-cceeecCCCcccccCC-ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCC
Q 048289          555 CLANSS-LWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSE  632 (920)
Q Consensus       555 ~~~~~~-L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  632 (920)
                      .+...+ |+.|++++|++++.+| ..+..+++|+.|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++
T Consensus       398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~  474 (562)
T 3a79_B          398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA  474 (562)
T ss_dssp             TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred             hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence            666666 9999999999998455 5688999999999999999988777665  79999999999999 67777779999


Q ss_pred             CCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHH
Q 048289          633 LQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYF  678 (920)
Q Consensus       633 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  678 (920)
                      |++|++++|++++ +|.. ....+++|+.|++++|++.+.+|..++
T Consensus       475 L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          475 LQELNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             CSEEECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             CCEEECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            9999999999994 5544 235689999999999999999886655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.2e-37  Score=353.59  Aligned_cols=300  Identities=22%  Similarity=0.247  Sum_probs=174.9

Q ss_pred             CCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEE
Q 048289          274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESID  353 (920)
Q Consensus       274 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  353 (920)
                      .+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+.+|+.+++..|..           ..+++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            46778888888887 57777788888888888888887777777777777765555554432           3457777


Q ss_pred             ccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCC
Q 048289          354 LRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI  433 (920)
Q Consensus       354 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l  433 (920)
                      +++|.+++. |.   -.++|++|++++|.+++ ++.    .+++|++|++++|.++....     ..++|++|++++|.+
T Consensus        78 l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           78 LNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQL  143 (454)
T ss_dssp             CTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCC
T ss_pred             ecCCccccC-CC---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCC
Confidence            777777652 22   13567777777777765 321    23677777777776654321     125788888888888


Q ss_pred             cCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCCCCCC
Q 048289          434 SEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIPFLPP  512 (920)
Q Consensus       434 ~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~  512 (920)
                      +.+| .+..+++|++|++++|++++ +|..     ..+|++|++++|.+++++. ..+++|++|++++|++.+ +|..++
T Consensus       144 ~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~-----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~~  215 (454)
T 1jl5_A          144 EKLP-ELQNSSFLKIIDVDNNSLKK-LPDL-----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDLPL  215 (454)
T ss_dssp             SSCC-CCTTCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCCCT
T ss_pred             CCCc-ccCCCCCCCEEECCCCcCcc-cCCC-----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCCcC
Confidence            8877 47888888888888888875 4542     3478888888888777642 345677777777777776 444456


Q ss_pred             CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccC
Q 048289          513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLND  592 (920)
Q Consensus       513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  592 (920)
                      +|++|++++|.++ .+| .+..+++|++|++++|++++ +|...  ..|+.|++++|++++ +|..   .++|+.|++++
T Consensus       216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~  286 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLP--PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE  286 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCC--TTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccc--cccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence            7777777777776 455 36777777777777777764 33321  225666666666554 2322   24555555555


Q ss_pred             CccccccCccccCCCCCcEEECCCCccc
Q 048289          593 NQLEGSVPLSLVNCSFLEVLDVGNNRIN  620 (920)
Q Consensus       593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~  620 (920)
                      |++++. |..   .++|++|++++|+++
T Consensus       287 N~l~~l-~~~---~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          287 NIFSGL-SEL---PPNLYYLNASSNEIR  310 (454)
T ss_dssp             SCCSEE-SCC---CTTCCEEECCSSCCS
T ss_pred             CccCcc-cCc---CCcCCEEECcCCcCC
Confidence            555531 110   134555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-38  Score=359.92  Aligned_cols=393  Identities=26%  Similarity=0.309  Sum_probs=215.6

Q ss_pred             cCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEE
Q 048289          297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDL  376 (920)
Q Consensus       297 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  376 (920)
                      ..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+.+|+.+++..|.           ..++++|
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L   76 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHEL   76 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEE
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEE
Confidence            347888899999988 6788888889999999999998888888888877777666665442           1457888


Q ss_pred             EccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCcc
Q 048289          377 SLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQI  456 (920)
Q Consensus       377 ~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l  456 (920)
                      ++++|.+++...     ..++|++|++++|.++...     ..+++|++|++++|.++.+|...   ++|++|++++|++
T Consensus        77 ~l~~~~l~~lp~-----~~~~L~~L~l~~n~l~~lp-----~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l  143 (454)
T 1jl5_A           77 ELNNLGLSSLPE-----LPPHLESLVASCNSLTELP-----ELPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQL  143 (454)
T ss_dssp             ECTTSCCSCCCS-----CCTTCSEEECCSSCCSSCC-----CCCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCC
T ss_pred             EecCCccccCCC-----CcCCCCEEEccCCcCCccc-----cccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCC
Confidence            888887764221     1256666666666654321     12245555555555555544321   3455555555555


Q ss_pred             CCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCC
Q 048289          457 RGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS  536 (920)
Q Consensus       457 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  536 (920)
                      ++ +| .+.  .+                     ++|++|++++|++++ +|..+++|++|++++|++++ +| .+.+++
T Consensus       144 ~~-lp-~~~--~l---------------------~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~  195 (454)
T 1jl5_A          144 EK-LP-ELQ--NS---------------------SFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLP  195 (454)
T ss_dssp             SS-CC-CCT--TC---------------------TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CC-Cc-ccC--CC---------------------CCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-cccCCC
Confidence            43 33 222  34                     445555555555554 33344567777777777765 44 467777


Q ss_pred             CcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC
Q 048289          537 SIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN  616 (920)
Q Consensus       537 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  616 (920)
                      +|++|++++|++++ +|...  ..|+.|++++|.++ .+| .+..+++|+.|++++|++++ +|..   .++|++|++++
T Consensus       196 ~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~  266 (454)
T 1jl5_A          196 FLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRD  266 (454)
T ss_dssp             TCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCS
T ss_pred             CCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCC
Confidence            77777777777765 33322  24777777777777 445 36777777777777777774 4432   36777777777


Q ss_pred             CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289          617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN  696 (920)
Q Consensus       617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  696 (920)
                      |++++ +|..   .++|++|++++|++++. +.     ..++|+.|++++|++++. +.                     
T Consensus       267 N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-----~~~~L~~L~l~~N~l~~i-~~---------------------  314 (454)
T 1jl5_A          267 NYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-----LPPNLYYLNASSNEIRSL-CD---------------------  314 (454)
T ss_dssp             SCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-----CCTTCCEEECCSSCCSEE-CC---------------------
T ss_pred             Ccccc-cCcc---cCcCCEEECcCCccCcc-cC-----cCCcCCEEECcCCcCCcc-cC---------------------
Confidence            77775 4433   36777777777777652 11     125677777777777641 10                     


Q ss_pred             ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcc
Q 048289          697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES  776 (920)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~  776 (920)
                                               .++.|+.|++++|++++ +|..   +++|+.|++++|++++ +|.   .+++|++
T Consensus       315 -------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~  361 (454)
T 1jl5_A          315 -------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQ  361 (454)
T ss_dssp             -------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             -------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccE
Confidence                                     01346677777777775 4543   4677777777777774 454   3567777


Q ss_pred             ccCCCCcccc--cCcccccCC-------------CCCCeeeccCCcccC--CCCCCC
Q 048289          777 LDLSSNKVAG--EIPWQLTSL-------------NFLQVLNLSQNQLVG--PIPQGK  816 (920)
Q Consensus       777 L~Ls~N~l~g--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~iP~~~  816 (920)
                      |++++|++++  .+|.++..+             ++|++|++++|+++|  .||...
T Consensus       362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred             EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence            7777777777  677776666             789999999999998  888654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1e-35  Score=340.92  Aligned_cols=382  Identities=21%  Similarity=0.253  Sum_probs=242.3

Q ss_pred             EEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc-hhhhhcCCCCCEEECcCC
Q 048289          231 FMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI-PCIFANLTQLSFLDFSNN  309 (920)
Q Consensus       231 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n  309 (920)
                      .++.+++.++ .+|. +  .++|++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|++|++++|
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            4555555544 3343 2  256777777777777666777777777777777777776444 456777777777777777


Q ss_pred             CCCCcccccccCCCcCceeeccCccccccCCcc--ccCCCCCCEEEccCCCCCCCchhh-hhcCCCCCEEEccCCcCCCc
Q 048289          310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG--LFTSPLLESIDLRNNQLTGSISNS-ISELVNLIDLSLSSNNLSGN  386 (920)
Q Consensus       310 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~  386 (920)
                      ++.+..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            777666777777777777777777776544433  666677777777777776665554 56667777777777666543


Q ss_pred             chhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchh---------hhcccccceeccCCCccC
Q 048289          387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF---------LRTQHRLQILDLSDNQIR  457 (920)
Q Consensus       387 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~---------l~~~~~L~~L~Ls~n~l~  457 (920)
                      .+ ..+..+                       ..++|+.|++++|.+..++..         +..+++|+.|++++|++.
T Consensus       170 ~~-~~l~~l-----------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  225 (455)
T 3v47_A          170 CE-EDLLNF-----------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK  225 (455)
T ss_dssp             CT-TTSGGG-----------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred             Ch-hhhhcc-----------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence            22 222222                       113344444444444433321         234456777777777766


Q ss_pred             CCCCchhhcc-CCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCccccc--C
Q 048289          458 GGIPNWIWNV-GKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFC--N  534 (920)
Q Consensus       458 ~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~  534 (920)
                      +..|..+... ...+++.|++++|.+.+...                                ..+.+....+..+.  .
T Consensus       226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~  273 (455)
T 3v47_A          226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------------------------GHTNFKDPDNFTFKGLE  273 (455)
T ss_dssp             HHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------------------------TCCSSCCCCTTTTGGGT
T ss_pred             ccchhhhhccccccceeeEeecccccccccc--------------------------------chhhhccCccccccccc
Confidence            6555554311 12455555555554332211                                00111111111121  1


Q ss_pred             CCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEE
Q 048289          535 MSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLD  613 (920)
Q Consensus       535 l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  613 (920)
                      .++|+.|++++|.+++..|..+...+ |+.|++++|++++..|..|..+++|+.|+|++|++++..|..|.++++|++|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            24566666666666666666665555 66677777777767777777788888888888888877777888888888888


Q ss_pred             CCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCc
Q 048289          614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLP  674 (920)
Q Consensus       614 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  674 (920)
                      +++|++++..|..|..+++|++|++++|++++..+..+  ..+++|+.|++++|++++.+|
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCC
Confidence            88888887778888888888888888888876444333  457888899999999988888

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.2e-36  Score=343.40  Aligned_cols=362  Identities=22%  Similarity=0.236  Sum_probs=231.9

Q ss_pred             cccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcC
Q 048289          246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSL  325 (920)
Q Consensus       246 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  325 (920)
                      .++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|++++. +  ++.+++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            344444444444444444432 2 344444445555544444432 2  44444555555555544432 1  4444555


Q ss_pred             ceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCC
Q 048289          326 VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSH  405 (920)
Q Consensus       326 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~  405 (920)
                      ++|++++|.+++ ++  +..+++|++|++++|.+++.   .+..+++|++|++++|...+.+   .+..+++|++|++++
T Consensus       109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCC
Confidence            555555554443 22  44445555555555555442   1444555555555555333333   234455555555555


Q ss_pred             CccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCc
Q 048289          406 NSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI  485 (920)
Q Consensus       406 n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  485 (920)
                      |.++...    ...+++|++|++++|.++.++  +..+++|+.|++++|++++ +|  +.  .+++|+.|++++|.++++
T Consensus       180 n~l~~l~----l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          180 NKITELD----VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             SCCCCCC----CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCC
T ss_pred             Cccceec----cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--cc--ccCCCCEEEeeCCcCCCc
Confidence            5554421    334566666666666666653  6667777888888887776 44  33  667888888888888887


Q ss_pred             cCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceee
Q 048289          486 ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLD  565 (920)
Q Consensus       486 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~  565 (920)
                      +...+++|+.|++++|           +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|..  ...|+.|+
T Consensus       249 ~~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L~  313 (457)
T 3bz5_A          249 DVSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ--AAGITELD  313 (457)
T ss_dssp             CCTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT--TCCCSCCC
T ss_pred             CHHHCCCCCEEeccCC-----------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC--CCcceEec
Confidence            7777788888888776           46678888888877776  567899999999999988877742  22366666


Q ss_pred             cCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeec
Q 048289          566 MRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG  645 (920)
Q Consensus       566 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  645 (920)
                      +++|             ++|+.|++++|++++. +  +.++++|+.|++++|++++        ++.|..|++++|.+.|
T Consensus       314 l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g  369 (457)
T 3bz5_A          314 LSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA  369 (457)
T ss_dssp             CTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred             hhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence            5554             6899999999999984 3  8899999999999999986        3566777899999988


Q ss_pred             ccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289          646 PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF  681 (920)
Q Consensus       646 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l  681 (920)
                      .       ..+..|..+++++|+++|.+|..++...
T Consensus       370 ~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~  398 (457)
T 3bz5_A          370 E-------GQTITMPKETLTNNSLTIAVSPDLLDQF  398 (457)
T ss_dssp             E-------EEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred             c-------ceeeecCccccccCcEEEEcChhHhccc
Confidence            6       1345678899999999999997765443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-34  Score=332.42  Aligned_cols=137  Identities=17%  Similarity=0.235  Sum_probs=116.4

Q ss_pred             CCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEc
Q 048289          512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNL  590 (920)
Q Consensus       512 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  590 (920)
                      ++|++|++++|.+++..|..+..+++|++|++++|++++..|..+...+ |+.|++++|.+++..|..|..+++|++|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            3566777777777777777888888888888888888877777777766 888888888888888888889999999999


Q ss_pred             cCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccC
Q 048289          591 NDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT  648 (920)
Q Consensus       591 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  648 (920)
                      ++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999998888899999999999999999997777778899999999999999987765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.3e-37  Score=331.62  Aligned_cols=284  Identities=30%  Similarity=0.445  Sum_probs=199.1

Q ss_pred             CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCCcc--ccceEecCCC--CcEEEEECCCCCCcc--cCCCCCCc
Q 048289            1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCS--WDGVTCDMMT--GHVTGLDLSCSRLHG--SIPSDSSL   74 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~~~l   74 (920)
                      ||++||+++.++.               .+++|..+++||.  |.||+|+..+  ++|++|+|+++.+.|  .+|.  .+
T Consensus        10 aL~~~k~~~~~~~---------------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l   72 (313)
T 1ogq_A           10 ALLQIKKDLGNPT---------------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SL   72 (313)
T ss_dssp             HHHHHHHHTTCCG---------------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GG
T ss_pred             HHHHHHHhcCCcc---------------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hH
Confidence            6899999986542               5899988889998  9999998654  899999999999998  7777  78


Q ss_pred             cCCCCCCEEECCC-CCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289           75 FSLPHLQILNLAF-NDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN  153 (920)
Q Consensus        75 ~~l~~L~~L~Ls~-~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~  153 (920)
                      ..+++|++|++++ |.+.+. +|..++++++|++|+|++|.+++.+|..+.++++|++|++++|.+              
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l--------------  137 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL--------------  137 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE--------------
T ss_pred             hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc--------------
Confidence            8899999999985 777765 788888888888888888888888888888888888888888744              


Q ss_pred             CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCC-CCCEEEccCCCCCCcCCC-CcCCCCCCCE
Q 048289          154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLP-NLQNLILSYNKNLTSVFP-KVNWSSPLRF  231 (920)
Q Consensus       154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~-~~~~l~~L~~  231 (920)
                                    ++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++| .+.+.+| .+..++ |++
T Consensus       138 --------------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~  201 (313)
T 1ogq_A          138 --------------SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             --------------ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSE
T ss_pred             --------------CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccE
Confidence                          334555666666666666666666666666666665 6666666665 3443333 333333 555


Q ss_pred             EEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCC
Q 048289          232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL  311 (920)
Q Consensus       232 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  311 (920)
                      |++++|.+.+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++
T Consensus       202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            55555555555666666666666666666666644443 55566666666666666666666666666666666666666


Q ss_pred             CCcccccccCCCcCceeeccCcc
Q 048289          312 NGPISSSVSRLHSLVTIYLSYNS  334 (920)
Q Consensus       312 ~~~~~~~l~~l~~L~~L~L~~n~  334 (920)
                      ++.+|.. ..+++|+.+++++|.
T Consensus       281 ~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          281 CGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccCCCC-ccccccChHHhcCCC
Confidence            6555554 555666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.8e-35  Score=333.20  Aligned_cols=361  Identities=19%  Similarity=0.182  Sum_probs=233.8

Q ss_pred             cccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCC
Q 048289          336 NGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP  415 (920)
Q Consensus       336 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  415 (920)
                      .+..+..+..+++|++|++++|.+++. | .+..+++|++|++++|.+++. +   +..+++|++|++++|.++      
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~------   98 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLT------   98 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS------
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCc------
Confidence            334445566677777777777777754 3 567777777777777776642 1   445555555555555544      


Q ss_pred             CCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccce
Q 048289          416 VNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRY  495 (920)
Q Consensus       416 ~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~  495 (920)
                                         .++  +..+++|++|++++|++++. +  +.  .+++|++|++++|.++++....+++|++
T Consensus        99 -------------------~~~--~~~l~~L~~L~L~~N~l~~l-~--~~--~l~~L~~L~l~~N~l~~l~l~~l~~L~~  152 (457)
T 3bz5_A           99 -------------------NLD--VTPLTKLTYLNCDTNKLTKL-D--VS--QNPLLTYLNCARNTLTEIDVSHNTQLTE  152 (457)
T ss_dssp             -------------------CCC--CTTCTTCCEEECCSSCCSCC-C--CT--TCTTCCEEECTTSCCSCCCCTTCTTCCE
T ss_pred             -------------------eee--cCCCCcCCEEECCCCcCCee-c--CC--CCCcCCEEECCCCccceeccccCCcCCE
Confidence                               332  44445555555555555442 2  22  4455555555555555555445556666


Q ss_pred             EecccCcCCCCCCC-CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccc
Q 048289          496 LDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHG  573 (920)
Q Consensus       496 L~L~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~  573 (920)
                      |++++|+..+.++. .+++|++|++++|++++ +|  +..+++|+.|++++|++++.   .+...+ |+.|++++|++++
T Consensus       153 L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             EECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             EECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence            66666643333322 24566666666666665 23  56666777777777776654   134444 6677777777766


Q ss_pred             cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289          574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTR  653 (920)
Q Consensus       574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  653 (920)
                       +|  +..+++|+.|++++|++++..   +..+++|+.|++++|              +|+.|++++|++.+.+|.    
T Consensus       227 -ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----  282 (457)
T 3bz5_A          227 -ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----  282 (457)
T ss_dssp             -CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----
T ss_pred             -cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----
Confidence             34  566677777777777776543   344566666666654              345667777777776663    


Q ss_pred             CCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCC
Q 048289          654 FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSG  733 (920)
Q Consensus       654 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~  733 (920)
                      ..+++|+.|++++|++.+.+|...    ..+.....                               ...+.|++|++++
T Consensus       283 ~~l~~L~~L~Ls~n~~l~~l~~~~----~~L~~L~l-------------------------------~~~~~L~~L~L~~  327 (457)
T 3bz5_A          283 EGCRKIKELDVTHNTQLYLLDCQA----AGITELDL-------------------------------SQNPKLVYLYLNN  327 (457)
T ss_dssp             TTCTTCCCCCCTTCTTCCEEECTT----CCCSCCCC-------------------------------TTCTTCCEEECTT
T ss_pred             cccccCCEEECCCCcccceeccCC----CcceEech-------------------------------hhcccCCEEECCC
Confidence            346788888888888887777421    11211110                               1136789999999


Q ss_pred             CcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCC
Q 048289          734 NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP  813 (920)
Q Consensus       734 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  813 (920)
                      |++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|+++|.     .++..|..+++++|+++|.||
T Consensus       328 N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          328 TELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             CCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred             Cccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence            999984 3  9999999999999999997        35788899999999987     355678899999999999999


Q ss_pred             CC
Q 048289          814 QG  815 (920)
Q Consensus       814 ~~  815 (920)
                      ..
T Consensus       392 ~~  393 (457)
T 3bz5_A          392 PD  393 (457)
T ss_dssp             TT
T ss_pred             hh
Confidence            75

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=331.31  Aligned_cols=346  Identities=19%  Similarity=0.183  Sum_probs=268.3

Q ss_pred             eEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCC
Q 048289          425 MLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLK  504 (920)
Q Consensus       425 ~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~  504 (920)
                      .++.+++.++.+|..+.  +.++.|++++|.+++..+..+.  .+++|++|++++|.++.+.+..+.+            
T Consensus        15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~------------   78 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFNN------------   78 (477)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTT------------
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhhC------------
Confidence            45555556666665432  4566666666666655555554  5555555555555555543322221            


Q ss_pred             CCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCC
Q 048289          505 GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGS  583 (920)
Q Consensus       505 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~  583 (920)
                            +++|++|++++|++++..+..|.++++|++|++++|++.+..+..+.... |+.|++++|.+.+..+..|..++
T Consensus        79 ------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  152 (477)
T 2id5_A           79 ------LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN  152 (477)
T ss_dssp             ------CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred             ------CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence                  34667777777777766666778888888888888888887777777776 89999999999888888999999


Q ss_pred             cccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEE
Q 048289          584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILD  663 (920)
Q Consensus       584 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  663 (920)
                      +|+.|++++|++++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.++...  ....+|+.|+
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~  230 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLS  230 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEE
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEE
Confidence            99999999999997777789999999999999999998888889999999999999998888777655  3455899999


Q ss_pred             ccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhh
Q 048289          664 LSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEV  743 (920)
Q Consensus       664 Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~  743 (920)
                      +++|++++ +|...+..                                          ++.|+.|+|++|.+++..+..
T Consensus       231 l~~n~l~~-~~~~~~~~------------------------------------------l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          231 ITHCNLTA-VPYLAVRH------------------------------------------LVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             EESSCCCS-CCHHHHTT------------------------------------------CTTCCEEECCSSCCCEECTTS
T ss_pred             CcCCcccc-cCHHHhcC------------------------------------------ccccCeeECCCCcCCccChhh
Confidence            99999984 55443332                                          456799999999999888889


Q ss_pred             hhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCc
Q 048289          744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSS  823 (920)
Q Consensus       744 l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~  823 (920)
                      |..+++|+.|+|++|++++..|.+|..+++|++|||++|++++..+..|..+++|++|++++|++.+..+....+.....
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~  347 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR  347 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTS
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhc
Confidence            99999999999999999999999999999999999999999998888999999999999999999875442211112223


Q ss_pred             ccccCCcCCCCCCC
Q 048289          824 DSYNGNMGLCGFPL  837 (920)
Q Consensus       824 ~~~~~n~~lcg~~~  837 (920)
                      ..+.++...|+.|.
T Consensus       348 ~~~~~~~~~C~~p~  361 (477)
T 2id5_A          348 LNFNRQQPTCATPE  361 (477)
T ss_dssp             SCCTTCCCBEEESG
T ss_pred             cccCccCceeCCch
Confidence            34566777786653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.4e-32  Score=313.02  Aligned_cols=346  Identities=26%  Similarity=0.350  Sum_probs=204.6

Q ss_pred             CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCE
Q 048289           52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS  131 (920)
Q Consensus        52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  131 (920)
                      .+++.|+++++.+.. ++   .+..+++|++|++++|.+..  ++. ++.+++|++|++++|.+.+..+  ++++++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            357777777776652 33   36677777777777777765  343 7777777777777777764333  777777777


Q ss_pred             EEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 048289          132 LDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILS  211 (920)
Q Consensus       132 L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  211 (920)
                      |++++|.+..++.      +.++++|++|++++|.+.+. + .+..+++|++|++++ .+.+.  ..+.++++|++|+++
T Consensus       117 L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          117 LTLFNNQITDIDP------LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDIS  185 (466)
T ss_dssp             EECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECC
T ss_pred             EECCCCCCCCChH------HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECc
Confidence            7777776654321      56667777777777666543 2 366666777777653 33322  226666666666666


Q ss_pred             CCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc
Q 048289          212 YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI  291 (920)
Q Consensus       212 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  291 (920)
                      +| .+.. ++.+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..
T Consensus       186 ~n-~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          186 SN-KVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             SS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CC-cCCC-ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence            66 3332 2345556666666666666655443  55566666666666666532  34556666666666666666443


Q ss_pred             hhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCC
Q 048289          292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV  371 (920)
Q Consensus       292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  371 (920)
                      +  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..++
T Consensus       260 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~  331 (466)
T 1o6v_A          260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT  331 (466)
T ss_dssp             G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc
Confidence            3  5566666666666666654433  5556666666666666653322  4555666666666666665443  45566


Q ss_pred             CCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc
Q 048289          372 NLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP  437 (920)
Q Consensus       372 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp  437 (920)
                      +|+.|++++|.+++.   ..+..+++|+.|++++|++++..  + ...+++|+.|++++|.++.+|
T Consensus       332 ~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          332 KLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLT--P-LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             TCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCG--G-GTTCTTCCEEECCCEEEECCC
T ss_pred             cCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccc--h-hhcCCCCCEEeccCCcccCCc
Confidence            666666666665543   23455556666666655554332  1 344455555555555554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.5e-32  Score=310.07  Aligned_cols=349  Identities=26%  Similarity=0.337  Sum_probs=239.5

Q ss_pred             cCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcC
Q 048289           75 FSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNL  154 (920)
Q Consensus        75 ~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l  154 (920)
                      ..+++|++|+++++.+..  +| .+..+++|++|+|++|.+++. |. +.++++|++|++++|.+..+..      +.++
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l  111 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP------LANL  111 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred             hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh------hcCC
Confidence            457889999999998875  55 478899999999999999854 44 8999999999999998765432      6788


Q ss_pred             CCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEc
Q 048289          155 NELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL  234 (920)
Q Consensus       155 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  234 (920)
                      ++|++|++++|.+++..+  +.++++|++|++++|.+.+ ++ .+..+++|++|+++++  ... .+.+..+++|++|++
T Consensus       112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~--~~~-~~~~~~l~~L~~L~l  184 (466)
T 1o6v_A          112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ--VTD-LKPLANLTTLERLDI  184 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES--CCC-CGGGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc--ccC-chhhccCCCCCEEEC
Confidence            889999998888876544  7888888888888888774 33 4788888888888643  222 234667777777777


Q ss_pred             cCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCc
Q 048289          235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGP  314 (920)
Q Consensus       235 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  314 (920)
                      ++|.+.+.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.
T Consensus       185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence            77776643  236677777777777777765433  56677777777777776643  3466677777777777777654


Q ss_pred             ccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhh
Q 048289          315 ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAE  394 (920)
Q Consensus       315 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  394 (920)
                      .+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+   +..
T Consensus       259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~  329 (466)
T 1o6v_A          259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSS  329 (466)
T ss_dssp             GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGG
T ss_pred             hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hcc
Confidence            43  6666777777777776664322  5566667777777666665433  5566666666666666654332   344


Q ss_pred             cCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcE
Q 048289          395 LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNH  474 (920)
Q Consensus       395 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~  474 (920)
                      +++|++|++++|                         .++.+ ..+..+++|+.|++++|++.+..|  +.  .+++|+.
T Consensus       330 l~~L~~L~l~~n-------------------------~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~  379 (466)
T 1o6v_A          330 LTKLQRLFFYNN-------------------------KVSDV-SSLANLTNINWLSAGHNQISDLTP--LA--NLTRITQ  379 (466)
T ss_dssp             CTTCCEEECCSS-------------------------CCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GT--TCTTCCE
T ss_pred             CccCCEeECCCC-------------------------ccCCc-hhhccCCCCCEEeCCCCccCccch--hh--cCCCCCE
Confidence            555555555555                         44444 245566667777777777666555  33  5667777


Q ss_pred             EECCCCcCcCcc
Q 048289          475 LNLSHNFLTGIE  486 (920)
Q Consensus       475 L~Ls~n~l~~~~  486 (920)
                      |++++|.+++.+
T Consensus       380 L~l~~n~~~~~p  391 (466)
T 1o6v_A          380 LGLNDQAWTNAP  391 (466)
T ss_dssp             EECCCEEEECCC
T ss_pred             EeccCCcccCCc
Confidence            777777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.3e-34  Score=307.00  Aligned_cols=258  Identities=31%  Similarity=0.521  Sum_probs=186.2

Q ss_pred             CCceEEecCceecc--cCcccccCCCCcCeEeCCC-CcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEE
Q 048289          513 SLNFISVSNNKLSG--EIPLSFCNMSSIFYVNLSN-NSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILN  589 (920)
Q Consensus       513 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  589 (920)
                      +++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+                       |..|..+++|++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-----------------------p~~l~~l~~L~~L~  107 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-----------------------PPAIAKLTQLHYLY  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-----------------------CGGGGGCTTCSEEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC-----------------------ChhHhcCCCCCEEE
Confidence            56666666666665  5566666666666666653 5555444                       44555555555555


Q ss_pred             ccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCC-CCcEEEccCCc
Q 048289          590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP-KLRILDLSNNE  668 (920)
Q Consensus       590 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~  668 (920)
                      |++|++++.+|..|.++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+  ..++ +|+.|++++|+
T Consensus       108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSE
T ss_pred             CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCe
Confidence            55555555555555555556666666665555555555556666666666666555555443  2344 66667777776


Q ss_pred             CcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccC
Q 048289          669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLN  748 (920)
Q Consensus       669 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~  748 (920)
                      +++.+|..+ ..                                          +. |+.|++++|.+++.+|..++.++
T Consensus       186 l~~~~~~~~-~~------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          186 LTGKIPPTF-AN------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             EEEECCGGG-GG------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred             eeccCChHH-hC------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCC
Confidence            666666432 11                                          22 68899999999988999999999


Q ss_pred             CCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCcccccC
Q 048289          749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNG  828 (920)
Q Consensus       749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~  828 (920)
                      +|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.|
T Consensus       222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~  300 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence            999999999999988777 7889999999999999999999999999999999999999999999988788888888899


Q ss_pred             CcCCCCCCCCCCC
Q 048289          829 NMGLCGFPLSEKC  841 (920)
Q Consensus       829 n~~lcg~~~~~~c  841 (920)
                      |+.+||.|+. .|
T Consensus       301 N~~lc~~p~~-~C  312 (313)
T 1ogq_A          301 NKCLCGSPLP-AC  312 (313)
T ss_dssp             SSEEESTTSS-CC
T ss_pred             CCCccCCCCC-CC
Confidence            9999998875 47

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=308.10  Aligned_cols=323  Identities=22%  Similarity=0.235  Sum_probs=262.3

Q ss_pred             EECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCC
Q 048289           57 LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSG  136 (920)
Q Consensus        57 L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~  136 (920)
                      ++.++..+. .+|.  .+  .+++++|+|++|.++.. .+..|.++++|++|+|++|.+++..|..+.++++|++|++++
T Consensus        16 v~c~~~~l~-~ip~--~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           16 VLCHRKRFV-AVPE--GI--PTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EECCSCCCS-SCCS--CC--CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEeCCCCcC-cCCC--CC--CCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            344444444 4454  33  35889999999998874 567789999999999999999988888899999999999999


Q ss_pred             CCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCC
Q 048289          137 NSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNL  216 (920)
Q Consensus       137 n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  216 (920)
                      |.+..++..    .+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++| .+
T Consensus        90 n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l  164 (477)
T 2id5_A           90 NRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NL  164 (477)
T ss_dssp             SCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CC
T ss_pred             CcCCccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cC
Confidence            987765433    3467888888888888888888888888999999999999888777888888899999999888 55


Q ss_pred             CcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhh
Q 048289          217 TSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF  295 (920)
Q Consensus       217 ~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  295 (920)
                      ....+ .+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|.++...+..+
T Consensus       165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  244 (477)
T 2id5_A          165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV  244 (477)
T ss_dssp             SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred             cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence            55444 57788888888888888888777788888889999988887776777666666788899998888886655778


Q ss_pred             hcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCE
Q 048289          296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLID  375 (920)
Q Consensus       296 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  375 (920)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|+.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred             cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence            88888999999988888777778888888888888888888777888888888888888888888777777888888888


Q ss_pred             EEccCCcCCCcchhh
Q 048289          376 LSLSSNNLSGNVELY  390 (920)
Q Consensus       376 L~L~~n~l~~~~~~~  390 (920)
                      |++++|++.+.....
T Consensus       325 L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          325 LILDSNPLACDCRLL  339 (477)
T ss_dssp             EECCSSCEECSGGGH
T ss_pred             EEccCCCccCccchH
Confidence            888888887655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=4.9e-31  Score=295.15  Aligned_cols=348  Identities=22%  Similarity=0.230  Sum_probs=231.9

Q ss_pred             cCCCCCCCCCcc-ccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCc-CCCCCCCCE
Q 048289           30 MISWKEEKDCCS-WDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRFPNLAH  107 (920)
Q Consensus        30 l~~w~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~-~~~l~~L~~  107 (920)
                      +++|..+.+||. |.++.|....-++   +-.....  ....  .-..++++++|+++++.+..  +|.. +..+++|++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~~~i---~~~~~~~--~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~   73 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYDVHI---DMQTQDV--YFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVEL   73 (390)
T ss_dssp             ----CCEECBCC------EEEESCEE---CSSCCCC--EESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCSE
T ss_pred             cCCCCCccceehhhhhhccceeeeee---ecccccc--cccc--cccccCCceEEEecCCchhh--CChhHhcccccCcE
Confidence            678988888875 4444443211111   1111111  1111  23457889999999888765  5554 678899999


Q ss_pred             EeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEcc
Q 048289          108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLG  187 (920)
Q Consensus       108 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls  187 (920)
                      |++++|.+.+..+..++.+++|++|++++|.+..+...    .+.++++|++|++++|.++...+..+.++++|++|+++
T Consensus        74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            99999998877777888999999999999877654432    35677888888888888876555556788888888888


Q ss_pred             CCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccC
Q 048289          188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI  267 (920)
Q Consensus       188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  267 (920)
                      +|.+.+..+..+..+++|++|++++| .+...  .+..+++|+.|++++|.+.+     +...++|++|++++|.+... 
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-  220 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-  220 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSS-CCSBC--CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-
T ss_pred             CCccCccChhhccCCCCCCEEECCCC-cCCcc--ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-
Confidence            88888766777888888888888887 44432  35566777888887776653     23345777888888777643 


Q ss_pred             cccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCC
Q 048289          268 PSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSP  347 (920)
Q Consensus       268 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  347 (920)
                      |.  ...++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..++
T Consensus       221 ~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~  295 (390)
T 3o6n_A          221 RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP  295 (390)
T ss_dssp             EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCT
T ss_pred             cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCC
Confidence            32  2346777888888777753  45777777888888887777777777777777777777777776 3455556677


Q ss_pred             CCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289          348 LLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS  409 (920)
Q Consensus       348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  409 (920)
                      +|++|++++|.++ .+|..+..+++|+.|++++|.++.. +   +..+++|+.|++++|++.
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~---~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEE
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C---chhhccCCEEEcCCCCcc
Confidence            7777777777776 3455566667777777777766532 1   344455555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=9.3e-30  Score=280.13  Aligned_cols=306  Identities=28%  Similarity=0.369  Sum_probs=185.8

Q ss_pred             ccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289           74 LFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN  153 (920)
Q Consensus        74 l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~  153 (920)
                      +..+++|++|+++++.+..  ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+..++      .+..
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~------~~~~  108 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS------ALQN  108 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG------GGTT
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch------HHcC
Confidence            3455666666666666554  33 25566666666666666653 333 666666666666666554321      2455


Q ss_pred             CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEE
Q 048289          154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD  233 (920)
Q Consensus       154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  233 (920)
                      +++|++|++++|.+.+..+  +..+++|++|++++|.....+ ..+..+++|++|++++| .+.... .+..+++|++|+
T Consensus       109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~-~~~~l~~L~~L~  183 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES-KVKDVT-PIANLTDLYSLS  183 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEE
T ss_pred             CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCC-CcCCch-hhccCCCCCEEE
Confidence            5566666666655554332  566666666666666544333 33666666666666666 333222 255666666666


Q ss_pred             ccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCC
Q 048289          234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG  313 (920)
Q Consensus       234 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (920)
                      +++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++
T Consensus       184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence            66666654322  6666777777777777664433  6667777777777777764433  6667777777777777665


Q ss_pred             cccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhh
Q 048289          314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFA  393 (920)
Q Consensus       314 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  393 (920)
                      .  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+   +.
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~  330 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LA  330 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GG
T ss_pred             C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hh
Confidence            3  3466667777777777766532  345666777777777777776666667777777777777777664433   55


Q ss_pred             hcCCCceEEcCCCcc
Q 048289          394 ELKNLLGLDLSHNSL  408 (920)
Q Consensus       394 ~l~~L~~L~Ls~n~l  408 (920)
                      .+++|++|++++|.+
T Consensus       331 ~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          331 SLSKMDSADFANQVI  345 (347)
T ss_dssp             GCTTCSEESSSCC--
T ss_pred             hhhccceeehhhhcc
Confidence            566666666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.6e-30  Score=305.26  Aligned_cols=347  Identities=22%  Similarity=0.249  Sum_probs=241.9

Q ss_pred             cccCCCCCCCCCcc----ccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCc-CCCC
Q 048289           28 SKMISWKEEKDCCS----WDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPG-FTRF  102 (920)
Q Consensus        28 ~~l~~w~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~-~~~l  102 (920)
                      ..+++|..+.+||.    |.++.|+.   +   ++.........+    .-..+.++++|+++++.+..  +|.. +..+
T Consensus         7 ~~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l   74 (597)
T 3oja_B            7 YNVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRK--LPAALLDSF   74 (597)
T ss_dssp             ----CCCSEECCCCC--CCSEEECSC---E---ECSSCCCCEESC----SSGGGCCCSEEEESSCEESE--ECTHHHHHC
T ss_pred             ccccCCCCCCcCcccCcCceeEecCc---e---ecccccccccCc----ccccCCCceEEEeeCCCCCC--cCHHHHccC
Confidence            36789988888874    66665542   1   122121111111    22356788899998888766  5543 6788


Q ss_pred             CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCC
Q 048289          103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT  182 (920)
Q Consensus       103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~  182 (920)
                      ++|++|+|++|.+.+..|..++.+++|++|++++|.+..++.    ..+.++++|++|++++|.++...+..|.++++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH----HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            899999999999887777788889999999999887765443    2356778888888888888866666678888888


Q ss_pred             EEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCc
Q 048289          183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNN  262 (920)
Q Consensus       183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  262 (920)
                      +|++++|.+.+..|..+..+++|++|++++| .+.+.  .++.+++|+.|++++|.+.+     +...++|++|++++|.
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~  222 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS  222 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBC--CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSC
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCc--ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCc
Confidence            8888888888777777888888888888887 44443  35567778888888877654     3344678888888887


Q ss_pred             CCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCcc
Q 048289          263 FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG  342 (920)
Q Consensus       263 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  342 (920)
                      +... +..+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ +|..
T Consensus       223 l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~  296 (597)
T 3oja_B          223 INVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY  296 (597)
T ss_dssp             CCEE-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECS
T ss_pred             cccc-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcc
Confidence            7643 2222  35788888888887753  567778888888888888877777777788888888888887764 5666


Q ss_pred             ccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289          343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS  409 (920)
Q Consensus       343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  409 (920)
                      +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. +   +..+++|+.|++++|++.
T Consensus       297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~---~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEE
T ss_pred             cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C---hhhcCCCCEEEeeCCCCC
Confidence            666777888888887777 4556667777777777777777632 1   344555555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.7e-29  Score=278.13  Aligned_cols=304  Identities=22%  Similarity=0.359  Sum_probs=262.5

Q ss_pred             CCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCC
Q 048289           51 TGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLV  130 (920)
Q Consensus        51 ~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~  130 (920)
                      -.++++|+++++.+.. ++   .+..+++|++|++++|.++.  ++. +..+++|++|++++|.+++ +| .+.++++|+
T Consensus        43 l~~L~~L~l~~~~i~~-~~---~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~  113 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ---GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR  113 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             cccccEEEEeCCcccc-ch---hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence            3579999999998863 33   58899999999999999986  555 8999999999999999984 44 699999999


Q ss_pred             EEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 048289          131 SLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLIL  210 (920)
Q Consensus       131 ~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  210 (920)
                      +|++++|.+..++.      +..+++|++|++++|......+. +..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus       114 ~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l  184 (347)
T 4fmz_A          114 ELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL  184 (347)
T ss_dssp             EEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred             EEECcCCcccCchh------hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence            99999998876432      77899999999999976655444 8999999999999999885433  889999999999


Q ss_pred             cCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCccc
Q 048289          211 SYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ  290 (920)
Q Consensus       211 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  290 (920)
                      ++| .+... +.+..+++|+++++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.
T Consensus       185 ~~n-~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          185 NYN-QIEDI-SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             TTS-CCCCC-GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             cCC-ccccc-ccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence            999 55543 348889999999999999987654  8899999999999999986533  89999999999999999864


Q ss_pred             chhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcC
Q 048289          291 IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISEL  370 (920)
Q Consensus       291 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  370 (920)
                        ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|  +..+
T Consensus       259 --~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l  332 (347)
T 4fmz_A          259 --NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL  332 (347)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred             --hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence              4688999999999999999875  468899999999999999998888889999999999999999998766  8899


Q ss_pred             CCCCEEEccCCcCC
Q 048289          371 VNLIDLSLSSNNLS  384 (920)
Q Consensus       371 ~~L~~L~L~~n~l~  384 (920)
                      ++|++|++++|.++
T Consensus       333 ~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          333 SKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEESSSCC---
T ss_pred             hccceeehhhhccc
Confidence            99999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.4e-30  Score=286.69  Aligned_cols=134  Identities=23%  Similarity=0.255  Sum_probs=86.1

Q ss_pred             CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289          537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG  615 (920)
Q Consensus       537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  615 (920)
                      +|+.|++++|.+++.  ..+...+ |+.|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|++|+++
T Consensus       227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECC
T ss_pred             cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECC
Confidence            344444444444432  2233333 5555555555555566667777777777777777774 45556677788888888


Q ss_pred             CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHh
Q 048289          616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ  679 (920)
Q Consensus       616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  679 (920)
                      +|+++ .+|..+..+++|++|++++|+++.. +    ...+++|+.|++++|++.+.....++.
T Consensus       304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~----~~~~~~L~~L~l~~N~~~~~~~~~~~~  361 (390)
T 3o6n_A          304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K----LSTHHTLKNLTLSHNDWDCNSLRALFR  361 (390)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred             CCcce-ecCccccccCcCCEEECCCCcccee-C----chhhccCCEEEcCCCCccchhHHHHHH
Confidence            88877 4566677778888888888887643 2    235678888888888888754444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.3e-29  Score=299.40  Aligned_cols=134  Identities=23%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289          537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG  615 (920)
Q Consensus       537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  615 (920)
                      +|+.|++++|.+++.  ..+...+ |+.|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|+
T Consensus       233 ~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence            344444444444431  2233333 5555555555555666667777777888888887775 45566677888888888


Q ss_pred             CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHh
Q 048289          616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQ  679 (920)
Q Consensus       616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  679 (920)
                      +|+++ .+|..+..+++|++|++++|++.+..     ...+++|+.|++++|++.+..+..++.
T Consensus       310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~  367 (597)
T 3oja_B          310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFR  367 (597)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred             CCCCC-ccCcccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence            88887 56777777888888888888876542     234678888899998888765444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.5e-30  Score=280.92  Aligned_cols=260  Identities=23%  Similarity=0.371  Sum_probs=167.0

Q ss_pred             CcccccccCccCCCCCCCCCcccCCCCcccCCC----CCCCCCccccceEecC--------CCCcEEEEECCCCCCcccC
Q 048289            1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISW----KEEKDCCSWDGVTCDM--------MTGHVTGLDLSCSRLHGSI   68 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~   68 (920)
                      ||++||+.+..+..             +.+++|    ....++|.|.|+.|+.        ...+|+.|+|+++.+. .+
T Consensus        31 aLl~~k~~~~~~~~-------------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l   96 (328)
T 4fcg_A           31 VLSQWQRHYNADRN-------------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF   96 (328)
T ss_dssp             HHHHHHHHHHHCCT-------------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred             HHHHHHHhccCCch-------------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence            57888888753322             256788    4567899999999952        2367888888888776 56


Q ss_pred             CCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHH
Q 048289           69 PSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLK  148 (920)
Q Consensus        69 ~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~  148 (920)
                      |.  .+..+++|++|+|++|.+..  +|..++.+++|++|+|++|.++ .+|..++++++|++|++++|...        
T Consensus        97 p~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~--------  163 (328)
T 4fcg_A           97 PD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL--------  163 (328)
T ss_dssp             CS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC--------
T ss_pred             Ch--hhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc--------
Confidence            65  57777788888887777772  7777777777777777777777 66777777777777777776433        


Q ss_pred             HHHhcCCCCCEEEcCCCCCCCCcchh---------ccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcC
Q 048289          149 ALVQNLNELQELVLNSVDMSYEVPSF---------LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSV  219 (920)
Q Consensus       149 ~~~~~l~~L~~L~L~~~~~~~~~~~~---------l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~  219 (920)
                                          +.+|..         +..+++|++|++++|.++ .+|..+..+++|++|++++| .+.+.
T Consensus       164 --------------------~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N-~l~~l  221 (328)
T 4fcg_A          164 --------------------TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS-PLSAL  221 (328)
T ss_dssp             --------------------CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS-CCCCC
T ss_pred             --------------------cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC-CCCcC
Confidence                                233332         344677777777777776 66666777777777777766 44433


Q ss_pred             CCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCC
Q 048289          220 FPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT  299 (920)
Q Consensus       220 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  299 (920)
                      .+.+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+++++
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred             chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence            33455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCEEECcCC
Q 048289          300 QLSFLDFSNN  309 (920)
Q Consensus       300 ~L~~L~L~~n  309 (920)
                      +|+.+++..+
T Consensus       302 ~L~~l~l~~~  311 (328)
T 4fcg_A          302 ANCIILVPPH  311 (328)
T ss_dssp             TTCEEECCGG
T ss_pred             CceEEeCCHH
Confidence            5555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=6.8e-32  Score=309.74  Aligned_cols=388  Identities=20%  Similarity=0.149  Sum_probs=212.8

Q ss_pred             CcCceeeccCccccccCCcc-ccCCCCCCEEEccCCCCCCC----chhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCC
Q 048289          323 HSLVTIYLSYNSLNGTIPSG-LFTSPLLESIDLRNNQLTGS----ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN  397 (920)
Q Consensus       323 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  397 (920)
                      ++|++|++++|.++...... +..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+......+..++.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            44566666666654322121 34455566666666655532    23344455555555555555543222222222220


Q ss_pred             CceEEcCCCccccCccCCCCCCCCcCceEeeeccCCc-----CCchhhhcccccceeccCCCccCCCCCchhhccCCCCC
Q 048289          398 LLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS-----EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTL  472 (920)
Q Consensus       398 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L  472 (920)
                                           ..++|++|++++|.++     .++..+..+++|++|++++|.+.+..+..+...-.   
T Consensus        83 ---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---  138 (461)
T 1z7x_W           83 ---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL---  138 (461)
T ss_dssp             ---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT---
T ss_pred             ---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh---
Confidence                                 0013444444444443     23555666666666666666654333322221000   


Q ss_pred             cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceeccc----CcccccCCCCcCeEeCCCCcC
Q 048289          473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGE----IPLSFCNMSSIFYVNLSNNSL  548 (920)
Q Consensus       473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l  548 (920)
                                     ..                     .++|++|++++|++++.    ++..+..+++|++|++++|.+
T Consensus       139 ---------------~~---------------------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          139 ---------------DP---------------------QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             ---------------ST---------------------TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             ---------------cC---------------------CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence                           00                     11344444444444432    244455566777777777766


Q ss_pred             CCcCcccccc-----c-ccceeecCCCccccc----CCccccCCCcccEEEccCCcccccc-----CccccCCCCCcEEE
Q 048289          549 NGMIPPCLAN-----S-SLWFLDMRMNNFHGS----IPQTFSKGSRLTILNLNDNQLEGSV-----PLSLVNCSFLEVLD  613 (920)
Q Consensus       549 ~~~~p~~~~~-----~-~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~  613 (920)
                      .+..+..+..     . .|+.|++++|.+++.    ++..+..+++|+.|++++|++++..     +..+..+++|++|+
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            5433322221     2 367777777766653    3555666777888888887776432     22233567788888


Q ss_pred             CCCCccccc----CchhhcCCCCCCEEEccCceeecccCCCccc---CCCCCCcEEEccCCcCcCCCchHHHhhhhcccc
Q 048289          614 VGNNRINGT----FPAWLGALSELQVLILRSNRFHGPITYSVTR---FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH  686 (920)
Q Consensus       614 L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~  686 (920)
                      +++|++++.    ++..+..+++|++|++++|++.+..+..+..   ...++|+.|++++|.+++.....+...+     
T Consensus       263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-----  337 (461)
T 1z7x_W          263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-----  337 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH-----
T ss_pred             CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH-----
Confidence            888877754    4666667778888888888775432221111   1235788888888877754222211111     


Q ss_pred             CCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhc-----cCCCceEeccCcccc
Q 048289          687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGK-----LNSLKGLNFSHNKLT  761 (920)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~  761 (920)
                                                        ..++.|++||+++|.+++..+..+..     .++|+.|+|++|.++
T Consensus       338 ----------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          338 ----------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             ----------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ----------------------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence                                              11356778888888887766655543     568888888888887


Q ss_pred             C----CcCcccccccCCccccCCCCcccccCccccc-----CCCCCCeeeccCCccc
Q 048289          762 G----LIPYSLENLTQLESLDLSSNKVAGEIPWQLT-----SLNFLQVLNLSQNQLV  809 (920)
Q Consensus       762 ~----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~-----~l~~L~~L~ls~N~l~  809 (920)
                      +    .+|..+..+++|++||+++|++++.-...+.     ....|+.|++.++...
T Consensus       384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            6    6777778888888888888887754211111     1234566666555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.6e-28  Score=268.06  Aligned_cols=284  Identities=21%  Similarity=0.233  Sum_probs=187.9

Q ss_pred             CcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcC
Q 048289          472 LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL  548 (920)
Q Consensus       472 L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  548 (920)
                      ++.++++++.++.++....++++.|++++|.+.+..+.   ..++|++|++++|++++..|..|.++++|++|++++|++
T Consensus        35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  114 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL  114 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence            44445554444444443344555555555555544332   245677777777777777777788888888888888877


Q ss_pred             CCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccc--cccCccccCCCCCcEEECCCCcccccCchh
Q 048289          549 NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE--GSVPLSLVNCSFLEVLDVGNNRINGTFPAW  626 (920)
Q Consensus       549 ~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  626 (920)
                      + .+|..+. ..|++|++++|++.+..+..|..+++|+.|++++|.++  +..|..+..+ +|++|++++|++++ +|..
T Consensus       115 ~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~  190 (332)
T 2ft3_A          115 V-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD  190 (332)
T ss_dssp             C-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS
T ss_pred             C-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcc
Confidence            7 3444443 34778888888877666667777778888888888775  3566667766 77778888887774 4444


Q ss_pred             hcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCccee
Q 048289          627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY  706 (920)
Q Consensus       627 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  706 (920)
                      +.  ++|++|++++|++.+..+..+  ..+++|+.|++++|++++..|.. +..                          
T Consensus       191 ~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~-~~~--------------------------  239 (332)
T 2ft3_A          191 LP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGS-LSF--------------------------  239 (332)
T ss_dssp             SC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTG-GGG--------------------------
T ss_pred             cc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhH-hhC--------------------------
Confidence            33  677777777777776655444  45677777777777777654422 111                          


Q ss_pred             eEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccc------cCCccccCC
Q 048289          707 SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL------TQLESLDLS  780 (920)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l------~~L~~L~Ls  780 (920)
                                      ++.|+.|+|++|+++ .+|..++.+++|+.|++++|++++..+..|..+      .+|+.|+++
T Consensus       240 ----------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~  302 (332)
T 2ft3_A          240 ----------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF  302 (332)
T ss_dssp             ----------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred             ----------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence                            345677777777777 667777777777777777777777766666543      567777777


Q ss_pred             CCccc--ccCcccccCCCCCCeeeccCCc
Q 048289          781 SNKVA--GEIPWQLTSLNFLQVLNLSQNQ  807 (920)
Q Consensus       781 ~N~l~--g~ip~~l~~l~~L~~L~ls~N~  807 (920)
                      +|.+.  +..|..|..++.|+.+++++|+
T Consensus       303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCcccccccCcccccccchhhhhhccccc
Confidence            77776  5666777777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.5e-27  Score=260.33  Aligned_cols=293  Identities=22%  Similarity=0.243  Sum_probs=199.9

Q ss_pred             EEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEE
Q 048289           54 VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLD  133 (920)
Q Consensus        54 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~  133 (920)
                      ++.++++++.+. .+|.  .+  .+.|++|++++|.++.. .+..|+++++|++|+|++|.+++..|..++++++|++|+
T Consensus        33 l~~l~~~~~~l~-~lp~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           33 LRVVQCSDLGLE-KVPK--DL--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             TTEEECTTSCCC-SCCC--SC--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CeEEEecCCCcc-ccCc--cC--CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            445666666665 4554  33  36899999999999874 445799999999999999999988899999999999999


Q ss_pred             cCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEcc
Q 048289          134 LSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQG--SIPENIFRLPNLQNLILS  211 (920)
Q Consensus       134 Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~  211 (920)
                      +++|.+..++...       .++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|++|+++
T Consensus       107 Ls~n~l~~l~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          107 LSKNQLKELPEKM-------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CCSSCCSBCCSSC-------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CCCCcCCccChhh-------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            9999887655432       2688899999998888888888888899999998888753  566777888888888888


Q ss_pred             CCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc
Q 048289          212 YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI  291 (920)
Q Consensus       212 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  291 (920)
                      +| .+......+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+
T Consensus       180 ~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  255 (330)
T 1xku_A          180 DT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV  255 (330)
T ss_dssp             SS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred             CC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence            87 4443222222  56666666666666665666666666666666666666555555666666666666666665 45


Q ss_pred             hhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCC--Cchhhhhc
Q 048289          292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG--SISNSISE  369 (920)
Q Consensus       292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~  369 (920)
                      |..+..+++|++|++++|++++..+..|....                  .....+.++.+++++|.+..  ..|..|..
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             ChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCcccccc
Confidence            55566666666666666666554444332210                  00112455666666665542  44556666


Q ss_pred             CCCCCEEEccCC
Q 048289          370 LVNLIDLSLSSN  381 (920)
Q Consensus       370 l~~L~~L~L~~n  381 (920)
                      +.+++.+++++|
T Consensus       318 ~~~l~~l~L~~N  329 (330)
T 1xku_A          318 VYVRAAVQLGNY  329 (330)
T ss_dssp             CCCGGGEEC---
T ss_pred             ccceeEEEeccc
Confidence            667777777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.1e-27  Score=257.83  Aligned_cols=289  Identities=22%  Similarity=0.270  Sum_probs=201.5

Q ss_pred             CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCC
Q 048289           78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNEL  157 (920)
Q Consensus        78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L  157 (920)
                      .++++++++++.++.  +|..+.  ++|++|++++|.+++..+..++++++|++|++++|.+.                 
T Consensus        31 c~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----------------   89 (330)
T 1xku_A           31 CHLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-----------------   89 (330)
T ss_dssp             EETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-----------------
T ss_pred             CCCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-----------------
Confidence            367788888777764  565443  57788888888887665666777777777777777554                 


Q ss_pred             CEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccC
Q 048289          158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYG  236 (920)
Q Consensus       158 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~  236 (920)
                                 +..|..+.++++|++|++++|.++ .+|..+.  ++|++|++++| .+....+ .+..+++|++|++++
T Consensus        90 -----------~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~  154 (330)
T 1xku_A           90 -----------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGT  154 (330)
T ss_dssp             -----------CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCS
T ss_pred             -----------eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCC
Confidence                       344555566666666666666665 4444433  56666666666 4443333 456666666666666


Q ss_pred             CcCcc--cccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCc
Q 048289          237 CNFMG--SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGP  314 (920)
Q Consensus       237 n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  314 (920)
                      |.+..  ..+..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus       155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          155 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence            66643  556677788888888888888874 454443  7888888888888877778888888888888888888877


Q ss_pred             ccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhc------CCCCCEEEccCCcCCC-cc
Q 048289          315 ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISE------LVNLIDLSLSSNNLSG-NV  387 (920)
Q Consensus       315 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~-~~  387 (920)
                      .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..      .+.++.+++++|.+.. .+
T Consensus       232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i  310 (330)
T 1xku_A          232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI  310 (330)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred             ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc
Confidence            7777888888888888888887 77778888888888888888888766666543      3677888888887752 23


Q ss_pred             hhhhhhhcCCCceEEcCCC
Q 048289          388 ELYMFAELKNLLGLDLSHN  406 (920)
Q Consensus       388 ~~~~~~~l~~L~~L~Ls~n  406 (920)
                      ....|..+.+++.+++++|
T Consensus       311 ~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          311 QPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CGGGGTTCCCGGGEEC---
T ss_pred             CccccccccceeEEEeccc
Confidence            4456666777777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.2e-27  Score=261.22  Aligned_cols=293  Identities=20%  Similarity=0.223  Sum_probs=183.6

Q ss_pred             EEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEE
Q 048289           54 VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLD  133 (920)
Q Consensus        54 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~  133 (920)
                      ++.++++++.+. .+|.  .+  .++|++|++++|.+... .+..++++++|++|++++|.+++..|..++++++|++|+
T Consensus        35 l~~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             TTEEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             CCEEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            456677777765 5555  33  37899999999998763 456799999999999999999988888999999999999


Q ss_pred             cCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEcc
Q 048289          134 LSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQG--SIPENIFRLPNLQNLILS  211 (920)
Q Consensus       134 Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~  211 (920)
                      +++|.+..++...       .++|++|++++|.++...+..+..+++|++|++++|.++.  ..+..+..+ +|++|+++
T Consensus       109 L~~n~l~~l~~~~-------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          109 ISKNHLVEIPPNL-------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CCSSCCCSCCSSC-------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CCCCcCCccCccc-------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            9999877654432       1577777777777776666667777777777777777642  455555555 66677766


Q ss_pred             CCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccc
Q 048289          212 YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI  291 (920)
Q Consensus       212 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  291 (920)
                      +| .+......+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+
T Consensus       181 ~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  256 (332)
T 2ft3_A          181 EA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV  256 (332)
T ss_dssp             SS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred             CC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence            66 3433222221  45555555555555554455555555555555555555444445555555555555555555 44


Q ss_pred             hhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCC--CCchhhhhc
Q 048289          292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT--GSISNSISE  369 (920)
Q Consensus       292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~  369 (920)
                      |..+..+++|++|++++|++++..+..+....                  .....+.|+.|++++|.+.  +..+..+..
T Consensus       257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             ChhhhcCccCCEEECCCCCCCccChhHccccc------------------cccccccccceEeecCcccccccCcccccc
Confidence            44455555555555555555443333332210                  0001345677777777665  456666777


Q ss_pred             CCCCCEEEccCCc
Q 048289          370 LVNLIDLSLSSNN  382 (920)
Q Consensus       370 l~~L~~L~L~~n~  382 (920)
                      +++|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            7777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=9.3e-31  Score=300.26  Aligned_cols=359  Identities=19%  Similarity=0.217  Sum_probs=181.0

Q ss_pred             CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcc----cCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289           78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSG----QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN  153 (920)
Q Consensus        78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~  153 (920)
                      ++|++|+|+++.++.......+..+++|++|+|++|.+++    .++..+..+++|++|++++|.+..   .........
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---VGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHHHT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHHHH
Confidence            3455666666655443222224455566666666665553    234445555666666666654321   222222333


Q ss_pred             CC----CCCEEEcCCCCCCC----CcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCC
Q 048289          154 LN----ELQELVLNSVDMSY----EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNW  225 (920)
Q Consensus       154 l~----~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  225 (920)
                      ++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+...                   ....
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------------l~~~  140 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-------------------LLDP  140 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------------HTST
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-------------------HhcC
Confidence            33    45555555555543    234444555555555555554432211111100                   0112


Q ss_pred             CCCCCEEEccCCcCccc----ccccccCCCCCCEEeCcCCcCCccCccccc-----CCCCCCEEEccCCcCccc----ch
Q 048289          226 SSPLRFMDLYGCNFMGS----IPASLGNLSQLTYLDLSYNNFSGHIPSTLS-----NLQQLRHLDLSNNKFTGQ----IP  292 (920)
Q Consensus       226 l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p  292 (920)
                      .++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++
T Consensus       141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  220 (461)
T 1z7x_W          141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  220 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence            23455555555554442    234445556666666666665543332222     244666666666666542    35


Q ss_pred             hhhhcCCCCCEEECcCCCCCCcc-----cccccCCCcCceeeccCcccccc----CCccccCCCCCCEEEccCCCCCCCc
Q 048289          293 CIFANLTQLSFLDFSNNQLNGPI-----SSSVSRLHSLVTIYLSYNSLNGT----IPSGLFTSPLLESIDLRNNQLTGSI  363 (920)
Q Consensus       293 ~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~  363 (920)
                      ..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..
T Consensus       221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  300 (461)
T 1z7x_W          221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  300 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence            55555666666666666654322     12222455666666666665532    3444555666666666666655443


Q ss_pred             hhhhhcC-----CCCCEEEccCCcCCCcch---hhhhhhcCCCceEEcCCCccccCccCCCC----CCCCcCceEeeecc
Q 048289          364 SNSISEL-----VNLIDLSLSSNNLSGNVE---LYMFAELKNLLGLDLSHNSLSLSTLLPVN----SSFPYLSMLSLSSC  431 (920)
Q Consensus       364 ~~~l~~l-----~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~l~~~  431 (920)
                      +..+...     ++|++|++++|.+++...   ...+..+++|++|++++|.++........    ...++|++|++++|
T Consensus       301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            3333322     466666666666654321   22344556666666666655433211110    12456666666666


Q ss_pred             CCc-----CCchhhhcccccceeccCCCccCC
Q 048289          432 NIS-----EFPDFLRTQHRLQILDLSDNQIRG  458 (920)
Q Consensus       432 ~l~-----~lp~~l~~~~~L~~L~Ls~n~l~~  458 (920)
                      .++     .+|..+..+++|++|++++|++++
T Consensus       381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            665     456666777777777777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=8.8e-30  Score=302.00  Aligned_cols=410  Identities=15%  Similarity=0.086  Sum_probs=269.6

Q ss_pred             CccCCCCCCEEECCCCCCCC--CCCCCcCC------------CCCCCCEEeCCCCCCcccCCccccCC-C-CCCEEEcCC
Q 048289           73 SLFSLPHLQILNLAFNDFNY--SYISPGFT------------RFPNLAHLNLSVSSFSGQIPAEISHL-S-KLVSLDLSG  136 (920)
Q Consensus        73 ~l~~l~~L~~L~Ls~~~~~~--~~i~~~~~------------~l~~L~~L~Ls~n~~~~~~p~~l~~l-~-~L~~L~Ls~  136 (920)
                      .+..+++|++|+|+++....  ..+|..++            .+++|++|+|++|.+++..+..+... + +|++|++++
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            35567888888887754210  11333333            67888888888888776666666553 3 488888888


Q ss_pred             CCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCC----cchhccCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEE
Q 048289          137 NSQLGLDTPVLKALVQNLNELQELVLNSVDMSYE----VPSFLTNLSSLTSLDLGNCGLQGS----IPENIFRLPNLQNL  208 (920)
Q Consensus       137 n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L  208 (920)
                      |..  +....+.....++++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+.++++|++|
T Consensus       148 ~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          148 CSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             CEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            742  23345666667888888888888877655    344556778888888888887632    33344567888888


Q ss_pred             EccCCCCCCcCCCCcCCCCCCCEEEccCCcCc---ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCC
Q 048289          209 ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFM---GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN  285 (920)
Q Consensus       209 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  285 (920)
                      ++++| .+.+....+..+++|++|+++.....   ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|
T Consensus       226 ~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          226 KVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             ECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTC
T ss_pred             eccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCC
Confidence            88887 45443336667788888888754322   234456677788888888775433 56677777888888888888


Q ss_pred             cCcccch-hhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccC-----------cccccc-CCccccCCCCCCEE
Q 048289          286 KFTGQIP-CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY-----------NSLNGT-IPSGLFTSPLLESI  352 (920)
Q Consensus       286 ~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~-~~~~l~~l~~L~~L  352 (920)
                      .+++... ..+..+++|++|+++++...+.++.....+++|++|++++           +.+++. ++.....+++|++|
T Consensus       304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            8664433 4467788888888873322223334445678888888883           444432 12223347788888


Q ss_pred             EccCCCCCCCchhhhhc-CCCCCEEEcc----CCcCCCc----chhhhhhhcCCCceEEcCCCc--cccCccCCCCCCCC
Q 048289          353 DLRNNQLTGSISNSISE-LVNLIDLSLS----SNNLSGN----VELYMFAELKNLLGLDLSHNS--LSLSTLLPVNSSFP  421 (920)
Q Consensus       353 ~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~  421 (920)
                      +++.+.+++..+..+.. +++|+.|+++    .|.+++.    .....+.++++|++|++++|.  ++..........++
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~  463 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP  463 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred             EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence            88888887766666665 7888888885    5566542    122345668888888887543  43332222233467


Q ss_pred             cCceEeeeccCCcC--CchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC
Q 048289          422 YLSMLSLSSCNISE--FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL  487 (920)
Q Consensus       422 ~L~~L~l~~~~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  487 (920)
                      +|++|++++|+++.  ++..+..+++|+.|++++|.+++.....+.. .+++|++|++++|+++....
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT-KLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH-HCSSCCEEEEESCBCCTTCT
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH-hcCccCeeECcCCcCCHHHH
Confidence            78888888887763  4566677888888888888875443332221 56788888888888776643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.7e-28  Score=265.14  Aligned_cols=275  Identities=19%  Similarity=0.170  Sum_probs=204.7

Q ss_pred             cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289          493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF  571 (920)
Q Consensus       493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l  571 (920)
                      ....+++++.++..+...+++|++|++++|.+++..+..|.++++|++|++++|++++..|..+...+ |++|++++|++
T Consensus        33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            33455566666655555556777777777777776666778888888888888888877677777666 88888888888


Q ss_pred             cccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCC-cccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289          572 HGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNN-RINGTFPAWLGALSELQVLILRSNRFHGPITY  649 (920)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  649 (920)
                      ++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|++.+..|.
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            86655667888888888888888875444 46788888888888888 46666677788888888888888888877666


Q ss_pred             CcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEE
Q 048289          650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTI  729 (920)
Q Consensus       650 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  729 (920)
                      .+  ..+++|+.|++++|++. .+|...+..                                          ++.|+.|
T Consensus       193 ~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~------------------------------------------~~~L~~L  227 (353)
T 2z80_A          193 SL--KSIQNVSHLILHMKQHI-LLLEIFVDV------------------------------------------TSSVECL  227 (353)
T ss_dssp             TT--TTCSEEEEEEEECSCST-THHHHHHHH------------------------------------------TTTEEEE
T ss_pred             HH--hccccCCeecCCCCccc-cchhhhhhh------------------------------------------cccccEE
Confidence            65  45778888888888874 344333221                                          3567888


Q ss_pred             EcCCCcCCCCchhhhh---ccCCCceEeccCccccC----CcCcccccccCCccccCCCCcccccCccc-ccCCCCCCee
Q 048289          730 DLSGNKFQGRIPEVVG---KLNSLKGLNFSHNKLTG----LIPYSLENLTQLESLDLSSNKVAGEIPWQ-LTSLNFLQVL  801 (920)
Q Consensus       730 ~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L  801 (920)
                      ++++|.+++..+..+.   ....++.++|++|.+++    .+|+.++.+++|++||+++|+++. +|.. |.++++|++|
T Consensus       228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L  306 (353)
T 2z80_A          228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI  306 (353)
T ss_dssp             EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence            8888888876554443   45678888888888876    467888889999999999999984 5544 6889999999


Q ss_pred             eccCCcccCCCC
Q 048289          802 NLSQNQLVGPIP  813 (920)
Q Consensus       802 ~ls~N~l~g~iP  813 (920)
                      ++++|++.|..|
T Consensus       307 ~L~~N~~~~~~~  318 (353)
T 2z80_A          307 WLHTNPWDCSCP  318 (353)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             EeeCCCccCcCC
Confidence            999999988776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.5e-26  Score=249.42  Aligned_cols=249  Identities=24%  Similarity=0.318  Sum_probs=156.6

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCc--Ccccccccc-cceeecCCCc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM--IPPCLANSS-LWFLDMRMNN  570 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~~~-L~~L~L~~n~  570 (920)
                      +.++++++.++..+...++++++|++++|+++...+..|.++++|++|++++|.++..  .+..+.... |++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            3455555555555544556777777777777755555577788888888888877632  122222222 4455555544


Q ss_pred             ccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289          571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY  649 (920)
Q Consensus       571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  649 (920)
                      +.. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..+..+..+                   
T Consensus        90 i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------------  149 (306)
T 2z66_A           90 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-------------------  149 (306)
T ss_dssp             EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-------------------
T ss_pred             ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-------------------
Confidence            442 23334444445555555554443332 344444444444444444444444444444                   


Q ss_pred             CcccCCCCCCcEEEccCCcCcC-CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccE
Q 048289          650 SVTRFPFPKLRILDLSNNEFTG-VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTT  728 (920)
Q Consensus       650 ~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  728 (920)
                             ++|+.|++++|.+++ .+|.. +.                                          .++.|+.
T Consensus       150 -------~~L~~L~l~~n~l~~~~~~~~-~~------------------------------------------~l~~L~~  179 (306)
T 2z66_A          150 -------SSLEVLKMAGNSFQENFLPDI-FT------------------------------------------ELRNLTF  179 (306)
T ss_dssp             -------TTCCEEECTTCEEGGGEECSC-CT------------------------------------------TCTTCCE
T ss_pred             -------cCCCEEECCCCccccccchhH-Hh------------------------------------------hCcCCCE
Confidence                   455555555555543 12211 11                                          1355678


Q ss_pred             EEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCC-CCCCeeeccCCc
Q 048289          729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQ  807 (920)
Q Consensus       729 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~  807 (920)
                      |++++|.+++..|..++.+++|+.|+|++|++++..+..+..+++|++||+++|++++.+|..+..+ ++|++|++++|+
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            8888888887778888888888889999998888878788888899999999999998888888888 489999999998


Q ss_pred             ccCCC
Q 048289          808 LVGPI  812 (920)
Q Consensus       808 l~g~i  812 (920)
                      +++..
T Consensus       260 ~~~~c  264 (306)
T 2z66_A          260 FACTC  264 (306)
T ss_dssp             EECSG
T ss_pred             eeccc
Confidence            88753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.5e-28  Score=291.31  Aligned_cols=460  Identities=15%  Similarity=0.103  Sum_probs=328.2

Q ss_pred             CcEEEEECCCCCCc---ccCCCCCCcc------------CCCCCCEEECCCCCCCCCCCCCcCCC-CCC-CCEEeCCCCC
Q 048289           52 GHVTGLDLSCSRLH---GSIPSDSSLF------------SLPHLQILNLAFNDFNYSYISPGFTR-FPN-LAHLNLSVSS  114 (920)
Q Consensus        52 ~~v~~L~L~~~~l~---~~~~~~~~l~------------~l~~L~~L~Ls~~~~~~~~i~~~~~~-l~~-L~~L~Ls~n~  114 (920)
                      +++++|+|+++...   +.+|.  ...            .+++|++|+|++|.+++. .+..+.. ++. |++|+|++|.
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPE--NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCT--TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCE
T ss_pred             CCCeEEEecCCcchhhcccccc--cccccchHHHHHHHhhCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCC
Confidence            35889999875431   23332  222            789999999999987654 2333444 445 9999999986


Q ss_pred             -Ccc-cCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCC----CcchhccCCCCCCEEEccC
Q 048289          115 -FSG-QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSY----EVPSFLTNLSSLTSLDLGN  188 (920)
Q Consensus       115 -~~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~Ls~  188 (920)
                       ++. .++....++++|++|++++|.+...+...+......+++|++|++++|.+++    .++..+.++++|++|++++
T Consensus       150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD  229 (592)
T ss_dssp             EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred             CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence             221 2333345789999999999977655544477888899999999999999873    3455567899999999999


Q ss_pred             CcCCCCCCcccCCCCCCCEEEccCCCCCC---cCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCc
Q 048289          189 CGLQGSIPENIFRLPNLQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSG  265 (920)
Q Consensus       189 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (920)
                      |.+.+ ++..+..+++|++|+++......   .....+..+++|+.++++++. ...+|..+..+++|++|++++|.+++
T Consensus       230 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          230 FEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             CBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred             ccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCH
Confidence            99884 77888899999999998642221   122267888999999998853 45678888899999999999999775


Q ss_pred             cCc-ccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC-----------CCCCCcc-cccccCCCcCceeeccC
Q 048289          266 HIP-STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN-----------NQLNGPI-SSSVSRLHSLVTIYLSY  332 (920)
Q Consensus       266 ~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-----------n~l~~~~-~~~l~~l~~L~~L~L~~  332 (920)
                      ... ..+..+++|++|+++++...+.++..+..+++|++|++++           +.+++.. ......+++|++|+++.
T Consensus       308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  387 (592)
T 3ogk_B          308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV  387 (592)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred             HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence            433 3468899999999994433344555567899999999993           5665432 23345689999999998


Q ss_pred             ccccccCCccccC-CCCCCEEEcc----CCCCCCC-----chhhhhcCCCCCEEEccCCc--CCCcchhhhhhhcCCCce
Q 048289          333 NSLNGTIPSGLFT-SPLLESIDLR----NNQLTGS-----ISNSISELVNLIDLSLSSNN--LSGNVELYMFAELKNLLG  400 (920)
Q Consensus       333 n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~  400 (920)
                      +.+++..+..+.. +++|++|+++    .|.+++.     ++..+..+++|+.|+++.|.  +++.........+++|++
T Consensus       388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~  467 (592)
T 3ogk_B          388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW  467 (592)
T ss_dssp             SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred             CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence            9888766666665 8999999996    6677764     44557789999999998654  665555555556899999


Q ss_pred             EEcCCCccccCccCCCCCCCCcCceEeeeccCCcC--CchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECC
Q 048289          401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE--FPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLS  478 (920)
Q Consensus       401 L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls  478 (920)
                      |++++|.+++.........+++|++|++++|.++.  ++.....+++|+.|++++|++++.....+.. .++.+....+.
T Consensus       468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~-~~p~l~~~~~~  546 (592)
T 3ogk_B          468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM-ARPYWNIELIP  546 (592)
T ss_dssp             EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG-CCTTEEEEEEC
T ss_pred             eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH-hCCCcEEEEec
Confidence            99999998765544445678999999999999763  5566778999999999999988765444432 45666555554


Q ss_pred             CCcCcCcc----CCCCcccceEecccCcCCCCCCCCCCCCceEE
Q 048289          479 HNFLTGIE----LLPWKNLRYLDLRSNSLKGSIPFLPPSLNFIS  518 (920)
Q Consensus       479 ~n~l~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~  518 (920)
                      .+.-....    .......+.+.. .+.+.|..+..|+.+..|+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~p~~~~~l~  589 (592)
T 3ogk_B          547 SRRVPEVNQQGEIREMEHPAHILA-YYSLAGQRTDCPTTVRVLK  589 (592)
T ss_dssp             CC---------------CCCEEEE-EECTTCSCSCCCTTCEECC
T ss_pred             CccccccccccCCcCCcchhheEe-eeecCCCccCCCCCeEecC
Confidence            43222111    111122333322 3345566666666766654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.5e-26  Score=259.81  Aligned_cols=247  Identities=19%  Similarity=0.219  Sum_probs=158.4

Q ss_pred             cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289          493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF  571 (920)
Q Consensus       493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l  571 (920)
                      ...++++++.++..+...++++++|++++|++++..+..|.++++|++|++++|.+++..+..+.... |++|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            34556666666555545566777777777777777777777777777777777777655544444444 55555555555


Q ss_pred             cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC-cccccCchhhcCCCCCCEEEccCceeecccCCC
Q 048289          572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN-RINGTFPAWLGALSELQVLILRSNRFHGPITYS  650 (920)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  650 (920)
                      ++..+..|..+++|++|+|++|+++...+..|.++++|++|++++| .+....+..|.+                     
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~---------------------  194 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG---------------------  194 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT---------------------
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC---------------------
Confidence            5444444444555555555555554444444444455555555442 222222223333                     


Q ss_pred             cccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEE
Q 048289          651 VTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID  730 (920)
Q Consensus       651 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  730 (920)
                           +++|+.|++++|++++. |.  +.                                          .++.|+.|+
T Consensus       195 -----l~~L~~L~L~~n~l~~~-~~--~~------------------------------------------~l~~L~~L~  224 (452)
T 3zyi_A          195 -----LFNLKYLNLGMCNIKDM-PN--LT------------------------------------------PLVGLEELE  224 (452)
T ss_dssp             -----CTTCCEEECTTSCCSSC-CC--CT------------------------------------------TCTTCCEEE
T ss_pred             -----CCCCCEEECCCCccccc-cc--cc------------------------------------------ccccccEEE
Confidence                 45556666666655532 21  00                                          135577888


Q ss_pred             cCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccC
Q 048289          731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVG  810 (920)
Q Consensus       731 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  810 (920)
                      |++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|++|||++|++++..+..|..+++|+.|++++|++..
T Consensus       225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            88888888778888888888888888888888888888888888888888888888777788888888888888887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.2e-26  Score=244.16  Aligned_cols=255  Identities=21%  Similarity=0.195  Sum_probs=161.5

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc-c
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN-F  571 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~-l  571 (920)
                      +.++++++.++..+...++++++|++++|.+++..+..|..+++|++|++++|.+++..|..+...+ |++|++++|. +
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            3455556665555444566777778888877777777788888888888888888776666666655 7777777776 6


Q ss_pred             cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCc
Q 048289          572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV  651 (920)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  651 (920)
                      ....|..|..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence            66656777777777777777777777667777777777777777777776666667777777777777777665443333


Q ss_pred             ccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEc
Q 048289          652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL  731 (920)
Q Consensus       652 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  731 (920)
                        ..+++|+.|++++|++++..|..+ ..                                          ++.|+.|++
T Consensus       174 --~~l~~L~~L~l~~n~l~~~~~~~~-~~------------------------------------------l~~L~~L~l  208 (285)
T 1ozn_A          174 --RGLHSLDRLLLHQNRVAHVHPHAF-RD------------------------------------------LGRLMTLYL  208 (285)
T ss_dssp             --TTCTTCCEEECCSSCCCEECTTTT-TT------------------------------------------CTTCCEEEC
T ss_pred             --cCccccCEEECCCCcccccCHhHc-cC------------------------------------------cccccEeeC
Confidence              335566666666666655444221 10                                          234556666


Q ss_pred             CCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccC
Q 048289          732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS  794 (920)
Q Consensus       732 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~  794 (920)
                      ++|.+++..+..+..+++|+.|+|++|++....+.. .-...++.++.+.+.+.+..|..+.+
T Consensus       209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             CCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence            666666555555666666666666666665443321 12233444455555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.3e-26  Score=252.07  Aligned_cols=289  Identities=20%  Similarity=0.199  Sum_probs=166.0

Q ss_pred             CCCCCCCCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeC
Q 048289           31 ISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNL  110 (920)
Q Consensus        31 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~L  110 (920)
                      ..|..+..+|.|.|+ |+          ++++.+. .+|.  .+.  ++|++|++++|.++.. .+..+.++++|++|++
T Consensus        21 ~~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L   83 (353)
T 2z80_A           21 ESSNQASLSCDRNGI-CK----------GSSGSLN-SIPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVL   83 (353)
T ss_dssp             ------CCEECTTSE-EE----------CCSTTCS-SCCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred             cCCCccCCCCCCCeE-ee----------CCCCCcc-cccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEEC
Confidence            456667778999987 75          3455554 4554  333  5888899988888763 3346888888888888


Q ss_pred             CCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCc
Q 048289          111 SVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCG  190 (920)
Q Consensus       111 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~  190 (920)
                      ++|.+++..|..++++++|++|++++|++..                            ..+..+.++++|++|++++|.
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------------------~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           84 TSNGINTIEEDSFSSLGSLEHLDLSYNYLSN----------------------------LSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSS----------------------------CCHHHHTTCTTCSEEECTTCC
T ss_pred             CCCccCccCHhhcCCCCCCCEEECCCCcCCc----------------------------CCHhHhCCCccCCEEECCCCC
Confidence            8888887777778888888888888885542                            233345666666666666666


Q ss_pred             CCCCCC-cccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCc
Q 048289          191 LQGSIP-ENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP  268 (920)
Q Consensus       191 l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  268 (920)
                      +....+ ..+..+++|++|++++|..+....+ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.    
T Consensus       136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~----  211 (353)
T 2z80_A          136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI----  211 (353)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST----
T ss_pred             CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc----
Confidence            663222 2556666666666666522222222 3344444444444444444444444444444444444444443    


Q ss_pred             ccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccc---cCCCcCceeeccCccccc----cCCc
Q 048289          269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV---SRLHSLVTIYLSYNSLNG----TIPS  341 (920)
Q Consensus       269 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~----~~~~  341 (920)
                                          ...+..+..+++|++|++++|.+++..+..+   .....++.+++.++.+.+    .+|.
T Consensus       212 --------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          212 --------------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             --------------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             --------------------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence                                2222222334444444444444443322221   123445555555555543    3556


Q ss_pred             cccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcch
Q 048289          342 GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE  388 (920)
Q Consensus       342 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  388 (920)
                      .+..+++|++|++++|+++...+..+..+++|++|++++|++.+..+
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            66777777777777777774433345777788888888888776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9e-26  Score=256.41  Aligned_cols=246  Identities=19%  Similarity=0.212  Sum_probs=161.0

Q ss_pred             cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289          493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF  571 (920)
Q Consensus       493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l  571 (920)
                      ...++++++.++..+...+++++.|++++|++++..+..|.++++|++|++++|.+++..+..+.... |++|++++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            34556666666655555566777777777777777777777777777777777777655555554444 55555555555


Q ss_pred             cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc-ccccCchhhcCCCCCCEEEccCceeecccCCC
Q 048289          572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR-INGTFPAWLGALSELQVLILRSNRFHGPITYS  650 (920)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  650 (920)
                      ++..+..|..+++|+.|+|++|+++...+..|..+++|++|++++|+ +....+..|.+                     
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~---------------------  183 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG---------------------  183 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT---------------------
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc---------------------
Confidence            54444455555555555555555554444455555555555555532 22222223444                     


Q ss_pred             cccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEE
Q 048289          651 VTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID  730 (920)
Q Consensus       651 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  730 (920)
                           +++|+.|++++|+++. +|.  +.                                          .++.|+.||
T Consensus       184 -----l~~L~~L~L~~n~l~~-~~~--~~------------------------------------------~l~~L~~L~  213 (440)
T 3zyj_A          184 -----LSNLRYLNLAMCNLRE-IPN--LT------------------------------------------PLIKLDELD  213 (440)
T ss_dssp             -----CSSCCEEECTTSCCSS-CCC--CT------------------------------------------TCSSCCEEE
T ss_pred             -----ccccCeecCCCCcCcc-ccc--cC------------------------------------------CCcccCEEE
Confidence                 4455555555555542 221  00                                          135577888


Q ss_pred             cCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc
Q 048289          731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV  809 (920)
Q Consensus       731 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  809 (920)
                      |++|.+++..|..|..+++|+.|+|++|++++..|..|.++++|++|||++|++++..+..|..+++|+.|++++|++.
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            8888888777888888888888888888888888888888888888888888888877778888888888888888865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=5.8e-28  Score=260.89  Aligned_cols=203  Identities=23%  Similarity=0.268  Sum_probs=147.0

Q ss_pred             cceeecCCCcccccCCccc--cCCCcccEEEccCCccccccCccccCC-----CCCcEEECCCCcccccCchhhcCCCCC
Q 048289          561 LWFLDMRMNNFHGSIPQTF--SKGSRLTILNLNDNQLEGSVPLSLVNC-----SFLEVLDVGNNRINGTFPAWLGALSEL  633 (920)
Q Consensus       561 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L  633 (920)
                      |++|++++|++++.+|..+  ..+++|++|+|++|++++. |..+..+     ++|++|++++|++++..|..|+.+++|
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            5555555555555555544  5666777777777777655 6666555     677777777777776666777777777


Q ss_pred             CEEEccCceeeccc--CCCcccCCCCCCcEEEccCCcCcCC--CchHHHhhhhccccCCCCCCCCCcceeccCcceeeEE
Q 048289          634 QVLILRSNRFHGPI--TYSVTRFPFPKLRILDLSNNEFTGV--LPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI  709 (920)
Q Consensus       634 ~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  709 (920)
                      ++|++++|++.+.+  +.......+++|++|++++|++++.  ++...+.                              
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~------------------------------  225 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA------------------------------  225 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH------------------------------
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh------------------------------
Confidence            77777777766542  2222224577888888888887731  1212111                              


Q ss_pred             EEEccchhhhhhhcccccEEEcCCCcCCCCch-hhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccC
Q 048289          710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP-EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI  788 (920)
Q Consensus       710 ~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i  788 (920)
                                  .++.|+.|||++|.+++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. 
T Consensus       226 ------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-  289 (312)
T 1wwl_A          226 ------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-  289 (312)
T ss_dssp             ------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-
T ss_pred             ------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-
Confidence                        24568899999999998775 55677899999999999998 7788776  8999999999999987 


Q ss_pred             cccccCCCCCCeeeccCCcccCC
Q 048289          789 PWQLTSLNFLQVLNLSQNQLVGP  811 (920)
Q Consensus       789 p~~l~~l~~L~~L~ls~N~l~g~  811 (920)
                      |. +..+++|++|++++|+++++
T Consensus       290 p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          290 PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hh-HhhCCCCCEEeccCCCCCCC
Confidence            66 89999999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.7e-26  Score=249.14  Aligned_cols=223  Identities=22%  Similarity=0.270  Sum_probs=145.5

Q ss_pred             CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289          537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG  615 (920)
Q Consensus       537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  615 (920)
                      .++.|++++|.++ .+|..+.... |++|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+.++++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            3444444444443 2333333333 444444444444 34444455555555555555555 445555555555555555


Q ss_pred             CCcccccCchhhc---------CCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhcccc
Q 048289          616 NNRINGTFPAWLG---------ALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH  686 (920)
Q Consensus       616 ~N~l~~~~p~~l~---------~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~  686 (920)
                      +|++.+.+|..+.         ++++|++|++++|+++ .+|..+  ..+++|+.|++++|++++ +|.. +..      
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~-l~~~-l~~------  227 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSA-LGPA-IHH------  227 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCC-CCGG-GGG------
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCc-Cchh-hcc------
Confidence            5555555554443         3666666666666666 444433  446677777777777764 3332 111      


Q ss_pred             CCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCc
Q 048289          687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPY  766 (920)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  766 (920)
                                                          ++.|++|+|++|++.+.+|..++.+++|+.|+|++|.+.+.+|.
T Consensus       228 ------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          228 ------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             ------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             ------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence                                                35678888888888888888889999999999999999999999


Q ss_pred             ccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc
Q 048289          767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV  809 (920)
Q Consensus       767 ~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  809 (920)
                      .++++++|++|||++|++.+.+|..+.++++|+.++++.|.+.
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999999999999999999999999999999988877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=9.9e-26  Score=243.09  Aligned_cols=276  Identities=20%  Similarity=0.197  Sum_probs=189.8

Q ss_pred             EEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---CCCCCceEEecCceeccc--CcccccCCCCcCeEeCCCCcC
Q 048289          474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGE--IPLSFCNMSSIFYVNLSNNSL  548 (920)
Q Consensus       474 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l  548 (920)
                      .++++++.++.++....+++++|++++|+++...+.   ..++|++|++++|.++..  .+..+..+++|++|++++|.+
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i   90 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV   90 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence            445555555555544445566666666666544332   256777888888877633  366677788899999999988


Q ss_pred             CCcCcccccccc-cceeecCCCcccccCC-ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccc-cCch
Q 048289          549 NGMIPPCLANSS-LWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRING-TFPA  625 (920)
Q Consensus       549 ~~~~p~~~~~~~-L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~  625 (920)
                      .+ +|..+...+ |++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++ ..|.
T Consensus        91 ~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           91 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            74 555566666 9999999999887765 678889999999999999998888889999999999999999987 5788


Q ss_pred             hhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcce
Q 048289          626 WLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEY  705 (920)
Q Consensus       626 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  705 (920)
                      .+..+++|++|++++|++++..|..+  ..+++|+.|++++|++++..+.. +.                          
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~--------------------------  220 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFP-YK--------------------------  220 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCSBCCSGG-GT--------------------------
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccCccChhh-cc--------------------------
Confidence            88888888888888888877666554  34667777777777776543321 11                          


Q ss_pred             eeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhcc-CCCceEeccCccccCCcC--cccccccCCccccCCCC
Q 048289          706 YSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKL-NSLKGLNFSHNKLTGLIP--YSLENLTQLESLDLSSN  782 (920)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip--~~~~~l~~L~~L~Ls~N  782 (920)
                                      .++.|+.||+++|.+++..|..+..+ ++|+.|+|++|++++..+  .-..-+...+.+.+..+
T Consensus       221 ----------------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~  284 (306)
T 2z66_A          221 ----------------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE  284 (306)
T ss_dssp             ----------------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGG
T ss_pred             ----------------CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccc
Confidence                            13455666777777766666666666 366777777776665432  11223444555556666


Q ss_pred             cccccCcccccCC
Q 048289          783 KVAGEIPWQLTSL  795 (920)
Q Consensus       783 ~l~g~ip~~l~~l  795 (920)
                      .+.+..|..+.+.
T Consensus       285 ~~~C~~p~~~~g~  297 (306)
T 2z66_A          285 RMECATPSDKQGM  297 (306)
T ss_dssp             GCBEEESGGGTTC
T ss_pred             ccccCCchhhCCc
Confidence            6666666655543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.6e-27  Score=253.81  Aligned_cols=246  Identities=22%  Similarity=0.264  Sum_probs=183.5

Q ss_pred             cccceEecccCcCCCCCCC-CCCCCceEEecCcee-cccCccccc-------CCCCcCeEeCCCCcCCCcCcccc--ccc
Q 048289          491 KNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKL-SGEIPLSFC-------NMSSIFYVNLSNNSLNGMIPPCL--ANS  559 (920)
Q Consensus       491 ~~L~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~~  559 (920)
                      ++|+.+++++|.+  .+|. .+..++.|++++|.+ ...+|..+.       ++++|++|++++|++++.+|..+  ...
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            4566777777776  3332 234477778888877 345565554       67888888888888887777765  555


Q ss_pred             c-cceeecCCCcccccCCccccCC-----CcccEEEccCCccccccCccccCCCCCcEEECCCCccccc--Cchhh--cC
Q 048289          560 S-LWFLDMRMNNFHGSIPQTFSKG-----SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT--FPAWL--GA  629 (920)
Q Consensus       560 ~-L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~l--~~  629 (920)
                      + |++|++++|++++. |..+..+     ++|++|++++|++++..|..|..+++|++|++++|++.+.  .|..+  ..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            5 88888888888877 6666665     7888888888888887778888888888888888887765  23344  78


Q ss_pred             CCCCCEEEccCceeecc--cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceee
Q 048289          630 LSELQVLILRSNRFHGP--ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYS  707 (920)
Q Consensus       630 l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  707 (920)
                      +++|++|++++|++++.  ++... ...+++|+.|++++|++++.+|...+.                            
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------  250 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNSLRDAAGAPSCD----------------------------  250 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSCCCSSCCCSCCC----------------------------
T ss_pred             CCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCcCCcccchhhhh----------------------------
Confidence            88888899988888732  11111 124678999999999988866522111                            


Q ss_pred             EEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccccc
Q 048289          708 AILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE  787 (920)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~  787 (920)
                                    .++.|+.|+|++|.++ .+|..+.  ++|+.|+|++|++++. |. +..+++|++|++++|++++.
T Consensus       251 --------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          251 --------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             --------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             --------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence                          1356889999999998 7787776  8899999999999987 66 89999999999999998864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9.1e-25  Score=254.91  Aligned_cols=285  Identities=22%  Similarity=0.279  Sum_probs=181.2

Q ss_pred             CcccCCCCCCCCCccccceEec------CCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCC
Q 048289           27 YSKMISWKEEKDCCSWDGVTCD------MMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFT  100 (920)
Q Consensus        27 ~~~l~~w~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~  100 (920)
                      +...+.|....+||.|+|..|.      .....++.|+++++.+. .+|.  .+.  ++|++|+|++|.++.  +|.   
T Consensus         9 ~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---   78 (622)
T 3g06_A            9 DAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---   78 (622)
T ss_dssp             -CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---
T ss_pred             HHHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---
Confidence            3466788878899999764321      11235888999999887 6665  443  788899999888875  665   


Q ss_pred             CCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCC
Q 048289          101 RFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSS  180 (920)
Q Consensus       101 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~  180 (920)
                      .+++|++|+|++|.++ .+|.   .+++|++|++++|.+..++.        .+++|++|++++|.++.. |..   +++
T Consensus        79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~l-p~~---l~~  142 (622)
T 3g06_A           79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSL-PVL---PPG  142 (622)
T ss_dssp             CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCC-CCC---CTT
T ss_pred             cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcC-CCC---CCC
Confidence            5788888888888887 4665   67888888888887665432        345556666655555432 221   245


Q ss_pred             CCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcC
Q 048289          181 LTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSY  260 (920)
Q Consensus       181 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  260 (920)
                      |++|++++|.+++ +|.                           ..++|+.|++++|.+++ +|   ..+++|+.|++++
T Consensus       143 L~~L~Ls~N~l~~-l~~---------------------------~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~  190 (622)
T 3g06_A          143 LQELSVSDNQLAS-LPA---------------------------LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSD  190 (622)
T ss_dssp             CCEEECCSSCCSC-CCC---------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred             CCEEECcCCcCCC-cCC---------------------------ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCC
Confidence            5555555555542 222                           12344555555555543 33   3345666666666


Q ss_pred             CcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCC
Q 048289          261 NNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP  340 (920)
Q Consensus       261 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  340 (920)
                      |.+++ +|.   ..++|+.|++++|.++. +|.   .+++|+.|++++|++++ +|   ..+++|++|++++|.++ .+|
T Consensus       191 N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp  257 (622)
T 3g06_A          191 NQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLP  257 (622)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCC
T ss_pred             CCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCC
Confidence            66663 332   23566667777766663 332   23667777777777664 33   34567777777777776 455


Q ss_pred             ccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCc
Q 048289          341 SGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN  386 (920)
Q Consensus       341 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  386 (920)
                      .   .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.
T Consensus       258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence            4   4567777888877777 5566777778888888888877743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.9e-24  Score=250.69  Aligned_cols=175  Identities=26%  Similarity=0.317  Sum_probs=91.9

Q ss_pred             cccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCce
Q 048289          444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNK  523 (920)
Q Consensus       444 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~  523 (920)
                      ..++.|++++|.++ .+|..+.    ++|++|++++|.++.++. .+++|++|++++|++++.. ..+++|++|++++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNP  112 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCC-CCCTTCCEEEECSCC
T ss_pred             CCCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCC-CCCCCCCEEECcCCc
Confidence            35777777777776 5555432    567777777777766555 4566666666666665432 255566666666666


Q ss_pred             ecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccc
Q 048289          524 LSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL  603 (920)
Q Consensus       524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l  603 (920)
                      +++. |.   .+++|+.|++++|++++ +|..+  ..|+.|++++|++++. |.   .+++|+.|++++|.+++ +|   
T Consensus       113 l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---  177 (622)
T 3g06_A          113 LTHL-PA---LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---  177 (622)
T ss_dssp             CCCC-CC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---
T ss_pred             CCCC-CC---CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---
Confidence            5542 22   34555666666665553 33221  2255555555555432 22   12345555555555543 33   


Q ss_pred             cCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceee
Q 048289          604 VNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH  644 (920)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  644 (920)
                      ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++
T Consensus       178 ~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~  214 (622)
T 3g06_A          178 MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT  214 (622)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc
Confidence            233455555555555543 222   1244455555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=1.9e-24  Score=230.41  Aligned_cols=264  Identities=18%  Similarity=0.156  Sum_probs=198.3

Q ss_pred             cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCc-C
Q 048289          473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS-L  548 (920)
Q Consensus       473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l  548 (920)
                      ++++.+++.++.++....+++++|++++|.+++..+.   ..++|++|++++|.+++..|..|..+++|++|++++|. +
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            4555555555555544455666666666666655432   25678888888888888878888888999999999987 7


Q ss_pred             CCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh
Q 048289          549 NGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL  627 (920)
Q Consensus       549 ~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l  627 (920)
                      .+..|..+...+ |++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence            666677777766 9999999999988888888889999999999999987777778888999999999999987777778


Q ss_pred             cCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceee
Q 048289          628 GALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYS  707 (920)
Q Consensus       628 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  707 (920)
                      ..+++|++|++++|++.+..|..+  ..+++|+.|++++|++++..+ ..+..                           
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~---------------------------  223 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLSALPT-EALAP---------------------------  223 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCH-HHHTT---------------------------
T ss_pred             cCccccCEEECCCCcccccCHhHc--cCcccccEeeCCCCcCCcCCH-HHccc---------------------------
Confidence            889999999999999888777665  457889999999998886443 33322                           


Q ss_pred             EEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCccccc--ccCCccccCCCC
Q 048289          708 AILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLEN--LTQLESLDLSSN  782 (920)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--l~~L~~L~Ls~N  782 (920)
                                     ++.|+.|++++|.+....+.. .-...++.+..+.+.+....|+.+.+  +..++..++.+|
T Consensus       224 ---------------l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          224 ---------------LRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             ---------------CTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             ---------------CcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence                           356788999999888654421 12234555667888888888887754  556666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=6.5e-24  Score=241.96  Aligned_cols=229  Identities=26%  Similarity=0.262  Sum_probs=120.3

Q ss_pred             CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCC
Q 048289          103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT  182 (920)
Q Consensus       103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~  182 (920)
                      ++|++|+|++|.+++..|..+.++++|++|++++|.+..+..    ..+.++++|++|++++|.++...+..|..+++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV----GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh----hhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence            355555555555554445555555555555555554332111    1122233333333333333334444455556666


Q ss_pred             EEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCc
Q 048289          183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNN  262 (920)
Q Consensus       183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  262 (920)
                      +|++++|.+....+..+..+++|++|++++|..+...                       .+..+..+++|++|++++|.
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----------------------~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----------------------SEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------------------CTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----------------------ChhhccCCCCCCEEECCCCc
Confidence            6666666655444445555555555555554222211                       12234555555555555555


Q ss_pred             CCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCcc
Q 048289          263 FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG  342 (920)
Q Consensus       263 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  342 (920)
                      +++. | .+..+++|++|++++|.+++..|..|..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..
T Consensus       208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          208 IKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             CSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             cccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            5532 2 3555566666666666666555556666666666666666666555556666666666666666665444444


Q ss_pred             ccCCCCCCEEEccCCCCC
Q 048289          343 LFTSPLLESIDLRNNQLT  360 (920)
Q Consensus       343 l~~l~~L~~L~L~~n~l~  360 (920)
                      +..+++|+.|++++|.+.
T Consensus       286 ~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             STTCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEccCCCcC
Confidence            555666666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=8e-27  Score=252.54  Aligned_cols=245  Identities=22%  Similarity=0.190  Sum_probs=175.9

Q ss_pred             CCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEc
Q 048289          512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNL  590 (920)
Q Consensus       512 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  590 (920)
                      ++|++|++++|++++..|..|..+++|++|++++|.+++..+  +...+ |++|++++|++++..     ..++|+.|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence            456666666676666666677777777777777777765443  44444 777777777776433     2367777777


Q ss_pred             cCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCc
Q 048289          591 NDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT  670 (920)
Q Consensus       591 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  670 (920)
                      ++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|++.+..+..+. ..+++|+.|++++|.++
T Consensus       107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCC
T ss_pred             CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCc
Confidence            777777654433   46677777777777776666777777777777777777765444331 23577888888888776


Q ss_pred             CCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCC
Q 048289          671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL  750 (920)
Q Consensus       671 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L  750 (920)
                      +. |...                                            .++.|++|+|++|.+++ +|..+..+++|
T Consensus       183 ~~-~~~~--------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L  216 (317)
T 3o53_A          183 DV-KGQV--------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGV  216 (317)
T ss_dssp             EE-ECCC--------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred             cc-cccc--------------------------------------------ccccCCEEECCCCcCCc-chhhhcccCcc
Confidence            43 1100                                            13567888999998885 44558889999


Q ss_pred             ceEeccCccccCCcCcccccccCCccccCCCCccc-ccCcccccCCCCCCeeeccC-CcccCCCCC
Q 048289          751 KGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA-GEIPWQLTSLNFLQVLNLSQ-NQLVGPIPQ  814 (920)
Q Consensus       751 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls~-N~l~g~iP~  814 (920)
                      +.|+|++|++++ +|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++++ +.+.|..|.
T Consensus       217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            999999999984 6888888999999999999998 78888888999999999985 467877664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3e-23  Score=235.60  Aligned_cols=246  Identities=26%  Similarity=0.291  Sum_probs=131.9

Q ss_pred             EEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcC
Q 048289           56 GLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLS  135 (920)
Q Consensus        56 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls  135 (920)
                      .++.++..+. .+|.  .+.  +++++|+|++|.+... .+..|.++++|++|+|++|.+++..+..+.++++|++|+++
T Consensus        47 ~v~c~~~~l~-~iP~--~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           47 KVICVRKNLR-EVPD--GIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             EEECCSCCCS-SCCS--CCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             EEEeCCCCcC-cCCC--CCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4555555554 3443  222  4566666666665543 33455566666666666666655444555555555555555


Q ss_pred             CCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC
Q 048289          136 GNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN  215 (920)
Q Consensus       136 ~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~  215 (920)
                      +|++                            +...+..|..+++|++|++++|.+....+..+..+++|++|++++|..
T Consensus       121 ~n~l----------------------------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~  172 (440)
T 3zyj_A          121 DNRL----------------------------TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR  172 (440)
T ss_dssp             SSCC----------------------------SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred             CCcC----------------------------CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC
Confidence            5543                            333334455556666666666665544444555556666666555422


Q ss_pred             CCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhh
Q 048289          216 LTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF  295 (920)
Q Consensus       216 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  295 (920)
                      +...                       .+..|.++++|++|++++|.++. +| .+..+++|++|++++|.+++..|..|
T Consensus       173 l~~i-----------------------~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~  227 (440)
T 3zyj_A          173 LSYI-----------------------SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSF  227 (440)
T ss_dssp             CCEE-----------------------CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred             ccee-----------------------CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhh
Confidence            2211                       12234445555555555555542 22 24555555555555555555555555


Q ss_pred             hcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCC
Q 048289          296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT  360 (920)
Q Consensus       296 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  360 (920)
                      ..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            55555555666555555555555555666666666666665444444555666666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3.6e-25  Score=239.53  Aligned_cols=244  Identities=20%  Similarity=0.169  Sum_probs=202.6

Q ss_pred             CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEcc
Q 048289          513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLN  591 (920)
Q Consensus       513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  591 (920)
                      +++..+++.+.+....+..+..+++|++|++++|.+++..|..+...+ |+.|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            345567777777666666677788999999999999988888888877 9999999999987765  8899999999999


Q ss_pred             CCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289          592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG  671 (920)
Q Consensus       592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  671 (920)
                      +|++++..     ..++|++|++++|++++..+..   +++|++|++++|++++..+..+  ..+++|+.|++++|++++
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCc
Confidence            99998533     3489999999999999776543   6889999999999998766554  457899999999999997


Q ss_pred             CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc
Q 048289          672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK  751 (920)
Q Consensus       672 ~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~  751 (920)
                      ..|..+...                                          ++.|++|+|++|.+++. |. ...+++|+
T Consensus       159 ~~~~~~~~~------------------------------------------l~~L~~L~L~~N~l~~~-~~-~~~l~~L~  194 (317)
T 3o53_A          159 VNFAELAAS------------------------------------------SDTLEHLNLQYNFIYDV-KG-QVVFAKLK  194 (317)
T ss_dssp             EEGGGGGGG------------------------------------------TTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred             ccHHHHhhc------------------------------------------cCcCCEEECCCCcCccc-cc-ccccccCC
Confidence            665443221                                          35689999999999865 33 34589999


Q ss_pred             eEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc-CCCCC
Q 048289          752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV-GPIPQ  814 (920)
Q Consensus       752 ~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~  814 (920)
                      .|+|++|++++. |..+..+++|++|+|++|++++ +|..+..+++|+.|++++|++. +.+|.
T Consensus       195 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             EEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            999999999975 4559999999999999999994 7888999999999999999998 55553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.1e-25  Score=255.54  Aligned_cols=234  Identities=22%  Similarity=0.186  Sum_probs=140.7

Q ss_pred             CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEcc
Q 048289          513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLN  591 (920)
Q Consensus       513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  591 (920)
                      +|++|++++|.+++..|..|..+++|++|++++|.+++..|  +...+ |+.|++++|.+++..+     .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            55666666666666556666666666666666666665444  44444 6666666666654332     2556666666


Q ss_pred             CCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289          592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG  671 (920)
Q Consensus       592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  671 (920)
                      +|.+++..+..   +++|+.|++++|++++..|..++.+++|++|++++|.+++..|..+. ..+++|+.|+|++|.+++
T Consensus       108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcccc
Confidence            66666544432   35566666666666666566666666666666666666655444331 134566666666666654


Q ss_pred             CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc
Q 048289          672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK  751 (920)
Q Consensus       672 ~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~  751 (920)
                      ..+..                                             .++.|+.|+|++|.+++..| .++.+++|+
T Consensus       184 ~~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~  217 (487)
T 3oja_A          184 VKGQV---------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT  217 (487)
T ss_dssp             EECCC---------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred             ccccc---------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCcc
Confidence            31100                                             03456667777777765333 366777777


Q ss_pred             eEeccCccccCCcCcccccccCCccccCCCCccc-ccCcccccCCCCCCeeecc
Q 048289          752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA-GEIPWQLTSLNFLQVLNLS  804 (920)
Q Consensus       752 ~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls  804 (920)
                      .|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            77777777775 5666677777777777777776 5666666666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.5e-23  Score=219.43  Aligned_cols=226  Identities=22%  Similarity=0.237  Sum_probs=180.4

Q ss_pred             EeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCccc
Q 048289          541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN  620 (920)
Q Consensus       541 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  620 (920)
                      .+..+..++ .+|..+. ..+++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+++
T Consensus        12 ~~c~~~~l~-~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCS-SCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCcc-ccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            344444443 3444332 23788888888888777778888888999999999888777778888889999999999988


Q ss_pred             ccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCC-CchHHHhhhhccccCCCCCCCCCccee
Q 048289          621 GTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV-LPTRYFQNFQAMMHGNNNSAEGGNMYI  699 (920)
Q Consensus       621 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~~~~~~~~~~~~~~  699 (920)
                      +..+..|.++++|++|++++|++.+..+..+  ..+++|+.|++++|++++. +|..+ .+                   
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~~-~~-------------------  147 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYF-SN-------------------  147 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGG-GG-------------------
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchhh-cc-------------------
Confidence            8888888888999999999998887655443  5678899999999988763 45332 21                   


Q ss_pred             ccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc----eEeccCccccCCcCcccccccCCc
Q 048289          700 NYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK----GLNFSHNKLTGLIPYSLENLTQLE  775 (920)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~~l~~L~  775 (920)
                                             ++.|++|++++|++++..+..+..+..|+    .|++++|++++..+..+.. .+|+
T Consensus       148 -----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~  203 (276)
T 2z62_A          148 -----------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLK  203 (276)
T ss_dssp             -----------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEE
T ss_pred             -----------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-Cccc
Confidence                                   45688999999999988888888887777    8999999999877766654 4899


Q ss_pred             cccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCC
Q 048289          776 SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ  814 (920)
Q Consensus       776 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  814 (920)
                      +|++++|++++..+..|.++++|+.|++++|++.+..|.
T Consensus       204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             EEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            999999999988888889999999999999999988774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.3e-24  Score=245.52  Aligned_cols=222  Identities=21%  Similarity=0.190  Sum_probs=188.3

Q ss_pred             CCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEE
Q 048289          535 MSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLD  613 (920)
Q Consensus       535 l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  613 (920)
                      +++|+.|++++|.+++..|..+...+ |+.|+|++|.+++..|  +..+++|+.|+|++|.+++..+     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            44899999999999998888888877 9999999999998776  8899999999999999986443     38999999


Q ss_pred             CCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCC
Q 048289          614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAE  693 (920)
Q Consensus       614 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~  693 (920)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..+  ..+++|+.|++++|.+++.+|..+...             
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~-------------  167 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS-------------  167 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG-------------
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh-------------
Confidence            999999977664   46889999999999998877665  457899999999999998777553222             


Q ss_pred             CCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccC
Q 048289          694 GGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQ  773 (920)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~  773 (920)
                                                   ++.|+.|+|++|.+++..+  +..+++|+.|+|++|.+++.+| .+..+++
T Consensus       168 -----------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~  215 (487)
T 3oja_A          168 -----------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG  215 (487)
T ss_dssp             -----------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred             -----------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCC
Confidence                                         4568999999999997633  4469999999999999998655 5999999


Q ss_pred             CccccCCCCcccccCcccccCCCCCCeeeccCCccc-CCCCC
Q 048289          774 LESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV-GPIPQ  814 (920)
Q Consensus       774 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~  814 (920)
                      |+.|||++|++++ +|..+..+++|+.|++++|++. |.+|.
T Consensus       216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            9999999999996 7888999999999999999987 55553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=6.3e-26  Score=269.02  Aligned_cols=109  Identities=12%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             ccCCCCcCeEeCCCCcCCCcCcccccc-cc-cceeecCCCcccccCCccc-cCCCcccEEEccCCccccccCc-cccCCC
Q 048289          532 FCNMSSIFYVNLSNNSLNGMIPPCLAN-SS-LWFLDMRMNNFHGSIPQTF-SKGSRLTILNLNDNQLEGSVPL-SLVNCS  607 (920)
Q Consensus       532 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~-L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~  607 (920)
                      +..+++|+.|++++ .+++..+..+.. .+ |+.|++++|.+++.....+ ..+++|+.|+|++|.+++.... ....++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34455666666654 443322222221 22 5555555555443322222 3456666666666666433332 233456


Q ss_pred             CCcEEECCCCcccccCchhh-cCCCCCCEEEccCc
Q 048289          608 FLEVLDVGNNRINGTFPAWL-GALSELQVLILRSN  641 (920)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N  641 (920)
                      +|++|++++|+++......+ ..+++|++..+..+
T Consensus       507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            66666666666643333333 34555555444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=2.7e-26  Score=272.22  Aligned_cols=400  Identities=18%  Similarity=0.154  Sum_probs=222.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCcCC-CCCCCCEEeCCCC-CCccc-CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHh
Q 048289           76 SLPHLQILNLAFNDFNYSYISPGFT-RFPNLAHLNLSVS-SFSGQ-IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQ  152 (920)
Q Consensus        76 ~l~~L~~L~Ls~~~~~~~~i~~~~~-~l~~L~~L~Ls~n-~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~  152 (920)
                      .+++|++|+|++|.+++. .+..+. .+++|++|+|++| .+++. ++..+.++++|++|++++|.+.......+.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            566777777777766543 222232 5677777777776 34322 3333446777777777777655444444444455


Q ss_pred             cCCCCCEEEcCCCC--CCCC-cchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC------CCcCCCCc
Q 048289          153 NLNELQELVLNSVD--MSYE-VPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN------LTSVFPKV  223 (920)
Q Consensus       153 ~l~~L~~L~L~~~~--~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~------~~~~~~~~  223 (920)
                      .+++|++|++++|.  ++.. +...+..+++|++|++++|...+.++..+..+++|++|+++.+..      +.+..+.+
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            66777777777765  2211 112234467777777777632223555566677777777655421      11111145


Q ss_pred             CCCCCCCEE-EccCCcCcccccccccCCCCCCEEeCcCCcCCccC-cccccCCCCCCEEEccCCcCcc-cchhhhhcCCC
Q 048289          224 NWSSPLRFM-DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI-PSTLSNLQQLRHLDLSNNKFTG-QIPCIFANLTQ  300 (920)
Q Consensus       224 ~~l~~L~~L-~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~  300 (920)
                      ..+++|+.+ .+.... .+.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| +.. .++.....+++
T Consensus       262 ~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            566667766 333222 2234444456677777777777755332 222456777777777776 332 22333335677


Q ss_pred             CCEEECcC---------CCCCCcccccc-cCCCcCceeeccCccccccCCcccc-CCCCCCEEEcc--C----CCCCCC-
Q 048289          301 LSFLDFSN---------NQLNGPISSSV-SRLHSLVTIYLSYNSLNGTIPSGLF-TSPLLESIDLR--N----NQLTGS-  362 (920)
Q Consensus       301 L~~L~L~~---------n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-  362 (920)
                      |++|++.+         +.+++.....+ ..+++|++|.+..+.+++..+..+. .+++|++|+++  +    +.+++. 
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            77777732         34433222222 2367777777766666644444443 36777777777  3    344421 


Q ss_pred             ----chhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcC--C
Q 048289          363 ----ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE--F  436 (920)
Q Consensus       363 ----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--l  436 (920)
                          ++..+..+++|+.|++++ .+++.........+++|+.|++++|.+++.........+++|++|++++|.++.  +
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence                122355677777777766 554333333333477777777777776544332222346777788887777742  2


Q ss_pred             chhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCC
Q 048289          437 PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN  480 (920)
Q Consensus       437 p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n  480 (920)
                      ......+++|+.|++++|+++......+. ..++.++...+..+
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLNVEVIDER  541 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEEEEEECSS
T ss_pred             HHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCEEEEecCC
Confidence            23445577888888888876432222221 14566655555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=4e-22  Score=210.27  Aligned_cols=217  Identities=24%  Similarity=0.316  Sum_probs=128.1

Q ss_pred             CCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCc
Q 048289           37 KDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS  116 (920)
Q Consensus        37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~  116 (920)
                      .++|.|.|+.|... +.++.++++++.+. .+|.  .+.  ++|++|+|++|.+... .+..|..+++|++|++++|.++
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~   74 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ   74 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence            47899999999743 45678999998887 4554  332  5788888888887653 3346777888888888888777


Q ss_pred             ccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCC
Q 048289          117 GQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIP  196 (920)
Q Consensus       117 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  196 (920)
                      ...+..+.++++|++|++++|++..                            ..+..+..+++|++|++++|.+++..+
T Consensus        75 ~i~~~~~~~l~~L~~L~l~~n~l~~----------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~  126 (270)
T 2o6q_A           75 TLPAGIFKELKNLETLWVTDNKLQA----------------------------LPIGVFDQLVNLAELRLDRNQLKSLPP  126 (270)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCCCC----------------------------CCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             eeChhhhcCCCCCCEEECCCCcCCc----------------------------CCHhHcccccCCCEEECCCCccCeeCH
Confidence            4444445667777777777775443                            233344555666666666666554444


Q ss_pred             cccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCC
Q 048289          197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ  276 (920)
Q Consensus       197 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  276 (920)
                      ..+..+++|++|++++| .+                       .+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus       127 ~~~~~l~~L~~L~Ls~n-~l-----------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          127 RVFDSLTKLTYLSLGYN-EL-----------------------QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             TTTTTCTTCCEEECCSS-CC-----------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             HHhCcCcCCCEEECCCC-cC-----------------------CccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence            44555555555555555 22                       2222233444444455555554444443444445555


Q ss_pred             CCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289          277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN  312 (920)
Q Consensus       277 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (920)
                      |++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            555555555555444444555555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.2e-22  Score=215.26  Aligned_cols=227  Identities=22%  Similarity=0.218  Sum_probs=140.2

Q ss_pred             EecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCccccc
Q 048289          496 LDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGS  574 (920)
Q Consensus       496 L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~  574 (920)
                      ++..+..+...+...++++++|++++|++++..+..|.++++|++|++++|++++..+..+...+ |++|++++|.+++.
T Consensus        12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            34444444444444456677777777777766666777777777777777777655444444444 55555555555555


Q ss_pred             CCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCccccc-CchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289          575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT-FPAWLGALSELQVLILRSNRFHGPITYSVTR  653 (920)
Q Consensus       575 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  653 (920)
                      .+..|..+++|++|++++|++++..+..+..+++|++|++++|++++. +|..+..+                       
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-----------------------  148 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-----------------------  148 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-----------------------
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC-----------------------
Confidence            555555555555555555555544444455555555555555555432 34444444                       


Q ss_pred             CCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhccccc-EEEcC
Q 048289          654 FPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFT-TIDLS  732 (920)
Q Consensus       654 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls  732 (920)
                         ++|+.|++++|++++..+. .+..+..+                                       +.+. .|+++
T Consensus       149 ---~~L~~L~Ls~N~l~~~~~~-~~~~l~~L---------------------------------------~~l~l~L~ls  185 (276)
T 2z62_A          149 ---TNLEHLDLSSNKIQSIYCT-DLRVLHQM---------------------------------------PLLNLSLDLS  185 (276)
T ss_dssp             ---TTCCEEECCSSCCCEECGG-GGHHHHTC---------------------------------------TTCCEEEECC
T ss_pred             ---CCCCEEECCCCCCCcCCHH-Hhhhhhhc---------------------------------------cccceeeecC
Confidence               4555555555555543332 22332222                                       1222 78999


Q ss_pred             CCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289          733 GNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP  789 (920)
Q Consensus       733 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  789 (920)
                      +|.+++..+..+. ..+|+.|+|++|++++..+..|+.+++|++|++++|++++..|
T Consensus       186 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          186 LNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            9999865555444 4589999999999998878888999999999999999987654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.3e-21  Score=206.44  Aligned_cols=206  Identities=26%  Similarity=0.317  Sum_probs=135.4

Q ss_pred             CcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC
Q 048289          537 SIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN  616 (920)
Q Consensus       537 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  616 (920)
                      ..+.++++++.++. +|..+. ..++.|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            34566666666653 343322 2255666666666555555566666666666666666544444455566666666666


Q ss_pred             CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289          617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN  696 (920)
Q Consensus       617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  696 (920)
                      |++++..+..|..+++|                          +.|++++|++++..|.. +..                
T Consensus        95 n~l~~~~~~~~~~l~~L--------------------------~~L~l~~n~l~~~~~~~-~~~----------------  131 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNL--------------------------AELRLDRNQLKSLPPRV-FDS----------------  131 (270)
T ss_dssp             SCCCCCCTTTTTTCSSC--------------------------CEEECCSSCCCCCCTTT-TTT----------------
T ss_pred             CcCCcCCHhHcccccCC--------------------------CEEECCCCccCeeCHHH-hCc----------------
Confidence            66654444444444444                          44445444444332211 111                


Q ss_pred             ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcc
Q 048289          697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES  776 (920)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~  776 (920)
                                                ++.|++|+|++|.+++..+..|+.+++|+.|+|++|++++..+..|..+++|++
T Consensus       132 --------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          132 --------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             --------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence                                      355677888888888766667888889999999999998888888888999999


Q ss_pred             ccCCCCcccccCcccccCCCCCCeeeccCCcccCCCC
Q 048289          777 LDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP  813 (920)
Q Consensus       777 L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  813 (920)
                      |+|++|++++..+..|..+++|+.|++++|++...-+
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            9999999998777788889999999999998876543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=5.3e-23  Score=221.82  Aligned_cols=205  Identities=22%  Similarity=0.236  Sum_probs=152.2

Q ss_pred             cceeecCCCcccccCCccc--cCCCcccEEEccCCccccccC----ccccCCCCCcEEECCCCcccccCchhhcCCCCCC
Q 048289          561 LWFLDMRMNNFHGSIPQTF--SKGSRLTILNLNDNQLEGSVP----LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ  634 (920)
Q Consensus       561 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  634 (920)
                      |++|++++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+..+++|++|++++|++.+..|..++.+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            6677777777776666666  677777777777777776444    3345677788888888888777777777888888


Q ss_pred             EEEccCceeecc--cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEE
Q 048289          635 VLILRSNRFHGP--ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTV  712 (920)
Q Consensus       635 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (920)
                      +|++++|++.+.  ++.......+++|++|++++|+++. +|.....                                 
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~---------------------------------  218 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA---------------------------------  218 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH---------------------------------
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH---------------------------------
Confidence            888888876653  2222222457889999999998863 2221100                                 


Q ss_pred             ccchhhhhhhcccccEEEcCCCcCCCCchhhhhcc---CCCceEeccCccccCCcCcccccccCCccccCCCCcccccCc
Q 048289          713 KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKL---NSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP  789 (920)
Q Consensus       713 ~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  789 (920)
                            ....++.|++|||++|.+++.+|+.++.+   ++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. |
T Consensus       219 ------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~  288 (310)
T 4glp_A          219 ------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P  288 (310)
T ss_dssp             ------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred             ------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence                  01124678999999999999888888887   69999999999999 6687775  8999999999999975 3


Q ss_pred             ccccCCCCCCeeeccCCcccC
Q 048289          790 WQLTSLNFLQVLNLSQNQLVG  810 (920)
Q Consensus       790 ~~l~~l~~L~~L~ls~N~l~g  810 (920)
                      . +..++.|+.|++++|+++.
T Consensus       289 ~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          289 Q-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-TTSCCCCSCEECSSTTTSC
T ss_pred             h-hhhCCCccEEECcCCCCCC
Confidence            3 6788999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=3.5e-22  Score=210.94  Aligned_cols=203  Identities=22%  Similarity=0.217  Sum_probs=139.0

Q ss_pred             cCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcE
Q 048289          533 CNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV  611 (920)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  611 (920)
                      ..+++|+.|++++|.++. ++ .+...+ |++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            344555555555555542 22 233333 66666666666542  35677788888888888888777777888888888


Q ss_pred             EECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCC
Q 048289          612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNS  691 (920)
Q Consensus       612 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~  691 (920)
                      |++++|++++..+..+..+++|++|++++|++++..+..+  ..+                                   
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l-----------------------------------  156 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKL-----------------------------------  156 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTC-----------------------------------
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccC-----------------------------------
Confidence            8888888887777778888888888888887764333221  122                                   


Q ss_pred             CCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccc
Q 048289          692 AEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL  771 (920)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  771 (920)
                                                      +.|+.|++++|++++..|..++.+++|+.|+|++|++++..|..++.+
T Consensus       157 --------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  204 (272)
T 3rfs_A          157 --------------------------------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  204 (272)
T ss_dssp             --------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             --------------------------------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence                                            334556666666665555566777777777777777777777777777


Q ss_pred             cCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCC
Q 048289          772 TQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG  815 (920)
Q Consensus       772 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  815 (920)
                      ++|++|++++|.+.+..|       .|++++++.|+++|.||..
T Consensus       205 ~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          205 TSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             cCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            888888888887776544       5777888888888888864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.8e-23  Score=228.11  Aligned_cols=87  Identities=17%  Similarity=0.217  Sum_probs=42.9

Q ss_pred             cccEEEcCCCcCCCC----chhhhhcc-CCCceEeccCccccCCcCc----ccccccCCccccCCCCcccccC-------
Q 048289          725 IFTTIDLSGNKFQGR----IPEVVGKL-NSLKGLNFSHNKLTGLIPY----SLENLTQLESLDLSSNKVAGEI-------  788 (920)
Q Consensus       725 ~l~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~ip~----~~~~l~~L~~L~Ls~N~l~g~i-------  788 (920)
                      .|++|||++|.+++.    ++..+..+ ++|+.|+|++|.+++..+.    .+..+++|++|+|++|.+.+..       
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            445555555555542    33344432 3555555555555544332    2234455555555555533322       


Q ss_pred             cccccCCCCCCeeeccCCcccCC
Q 048289          789 PWQLTSLNFLQVLNLSQNQLVGP  811 (920)
Q Consensus       789 p~~l~~l~~L~~L~ls~N~l~g~  811 (920)
                      +..+..++.|+.||+++|++.+.
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHhccCCceEEEecCCCcCCCc
Confidence            22445555566666666655443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=3.6e-22  Score=210.78  Aligned_cols=219  Identities=19%  Similarity=0.236  Sum_probs=173.1

Q ss_pred             ccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCC-CCCCCCceEEecCc
Q 048289          445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIP-FLPPSLNFISVSNN  522 (920)
Q Consensus       445 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~l~~n  522 (920)
                      .+..+++..+.+.+.....    .+++|+.|++++|.++.+.. ..+++|++|++++|.+.+... ..+++|++|++++|
T Consensus        20 ~l~~l~l~~~~~~~~~~~~----~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHH----HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS
T ss_pred             HHHHHHhcCcccccccccc----cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC
Confidence            3444455555444332211    44566666666666665543 345667777777777665321 23578888999999


Q ss_pred             eecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCc
Q 048289          523 KLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL  601 (920)
Q Consensus       523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  601 (920)
                      .+++..+..|..+++|++|++++|++++..+..+...+ |++|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            98888888889999999999999999987777777766 99999999999988888889999999999999999988888


Q ss_pred             cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchH
Q 048289          602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTR  676 (920)
Q Consensus       602 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  676 (920)
                      .+..+++|++|++++|++++..|..+..+++|++|++++|++.+         .+++|+.++++.|.++|.+|..
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccCc
Confidence            88999999999999999998888889999999999999998874         4668899999999999999865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.5e-23  Score=226.26  Aligned_cols=260  Identities=17%  Similarity=0.179  Sum_probs=189.5

Q ss_pred             EecccCcCCCCCCC---CCCCCceEEecCceecccCc----ccccCCC-CcCeEeCCCCcCCCcCccccccc-----c-c
Q 048289          496 LDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGEIP----LSFCNMS-SIFYVNLSNNSLNGMIPPCLANS-----S-L  561 (920)
Q Consensus       496 L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~~-----~-L  561 (920)
                      ++++.|.+.+.+|.   .+++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+...     . |
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45556666655443   24568888888888887766    6777888 89999999999887766666653     4 9


Q ss_pred             ceeecCCCcccccCCccc----cCC-CcccEEEccCCccccccCcccc----C-CCCCcEEECCCCcccccC----chhh
Q 048289          562 WFLDMRMNNFHGSIPQTF----SKG-SRLTILNLNDNQLEGSVPLSLV----N-CSFLEVLDVGNNRINGTF----PAWL  627 (920)
Q Consensus       562 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~----p~~l  627 (920)
                      ++|++++|.+++..+..+    ..+ ++|+.|+|++|++++..+..+.    . .++|++|++++|++++..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            999999999887766543    344 7899999999999876665543    3 368999999999998644    3445


Q ss_pred             cCCC-CCCEEEccCceeecccCCCccc--CCC-CCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCc
Q 048289          628 GALS-ELQVLILRSNRFHGPITYSVTR--FPF-PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGN  703 (920)
Q Consensus       628 ~~l~-~L~~L~L~~N~l~~~~~~~~~~--~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  703 (920)
                      ..++ +|++|+|++|++++..+..+..  ..+ ++|+.|||++|.+++.........+..                    
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--------------------  222 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--------------------  222 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--------------------
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--------------------
Confidence            5665 8999999999987655433211  133 589999999999886543322221111                    


Q ss_pred             ceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchh----hhhccCCCceEeccCccccCCcC-------ccccccc
Q 048289          704 EYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPE----VVGKLNSLKGLNFSHNKLTGLIP-------YSLENLT  772 (920)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~----~l~~l~~L~~L~Ls~N~l~~~ip-------~~~~~l~  772 (920)
                                        ..+.|++|||++|.+++..+.    .+..+++|+.|+|++|.+.+..+       ..+..++
T Consensus       223 ------------------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~  284 (362)
T 3goz_A          223 ------------------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ  284 (362)
T ss_dssp             ------------------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred             ------------------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence                              134789999999999986653    44677999999999999665543       4677889


Q ss_pred             CCccccCCCCcccccCccccc
Q 048289          773 QLESLDLSSNKVAGEIPWQLT  793 (920)
Q Consensus       773 ~L~~L~Ls~N~l~g~ip~~l~  793 (920)
                      +|++||+++|++.+..|..+.
T Consensus       285 ~L~~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          285 KIILVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             EEEEECTTSCBCCGGGCHHHH
T ss_pred             ceEEEecCCCcCCCcchHHHH
Confidence            999999999999887665443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=5.2e-23  Score=229.47  Aligned_cols=196  Identities=19%  Similarity=0.179  Sum_probs=139.6

Q ss_pred             cCCCcccEEEccCCcccc----ccCccccCCCCCcEEECCCCcccccCchhhc----CC---------CCCCEEEccCce
Q 048289          580 SKGSRLTILNLNDNQLEG----SVPLSLVNCSFLEVLDVGNNRINGTFPAWLG----AL---------SELQVLILRSNR  642 (920)
Q Consensus       580 ~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~----~l---------~~L~~L~L~~N~  642 (920)
                      ..+++|++|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            567788888888888876    4666777788888888888888654443333    33         788888888888


Q ss_pred             ee-cccCCC-cccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289          643 FH-GPITYS-VTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME  720 (920)
Q Consensus       643 l~-~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (920)
                      +. +.++.- .....+++|+.|++++|+++..--.....                                      ...
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------~~l  212 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------EGL  212 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------TTG
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------HHh
Confidence            76 222210 01124568888888888776210000000                                      000


Q ss_pred             hhcccccEEEcCCCcCC----CCchhhhhccCCCceEeccCccccCC----cCccccc--ccCCccccCCCCcccc----
Q 048289          721 KVLNIFTTIDLSGNKFQ----GRIPEVVGKLNSLKGLNFSHNKLTGL----IPYSLEN--LTQLESLDLSSNKVAG----  786 (920)
Q Consensus       721 ~~~~~l~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~--l~~L~~L~Ls~N~l~g----  786 (920)
                      ..++.|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+..  +++|++|+|++|++++    
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~  292 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  292 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence            12466888999999986    67888889999999999999999876    5666633  8899999999999998    


Q ss_pred             cCcccc-cCCCCCCeeeccCCcccCCCC
Q 048289          787 EIPWQL-TSLNFLQVLNLSQNQLVGPIP  813 (920)
Q Consensus       787 ~ip~~l-~~l~~L~~L~ls~N~l~g~iP  813 (920)
                      .+|..+ .++++|++|++++|++++..|
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            588777 668999999999999987764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.2e-22  Score=218.75  Aligned_cols=250  Identities=17%  Similarity=0.170  Sum_probs=180.1

Q ss_pred             CCceEEecCceecccCcccccCC--CCcCeEeCCCCcCCCcCcccccccccceeecCCCccccc-CCccccCCCcccEEE
Q 048289          513 SLNFISVSNNKLSGEIPLSFCNM--SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS-IPQTFSKGSRLTILN  589 (920)
Q Consensus       513 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  589 (920)
                      .++.+++++|.+.   +..+..+  +.++.|++++|.+.+..+..+....|++|++++|.+++. ++..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            3566777776665   4455555  778888888888887766654433488888888887765 677778888888888


Q ss_pred             ccCCccccccCccccCCCCCcEEECCCC-ccccc-CchhhcCCCCCCEEEccCc-eeecc-cCCCcccCCCC-CCcEEEc
Q 048289          590 LNDNQLEGSVPLSLVNCSFLEVLDVGNN-RINGT-FPAWLGALSELQVLILRSN-RFHGP-ITYSVTRFPFP-KLRILDL  664 (920)
Q Consensus       590 L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l~-~L~~L~L  664 (920)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++...  ..++ +|+.|++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l  202 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNL  202 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEEC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEEEe
Confidence            8888888778888888888999999888 67753 6666788888888888888 77653 22222  3467 8888888


Q ss_pred             cCCc--Cc-CCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCc-CCCCc
Q 048289          665 SNNE--FT-GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK-FQGRI  740 (920)
Q Consensus       665 s~N~--l~-~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~i  740 (920)
                      ++|.  ++ +.+|.. +                                          ..++.|+.|++++|. +++..
T Consensus       203 ~~~~~~~~~~~l~~~-~------------------------------------------~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          203 SGYRKNLQKSDLSTL-V------------------------------------------RRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             CSCGGGSCHHHHHHH-H------------------------------------------HHCTTCSEEECTTCTTCCGGG
T ss_pred             CCCcccCCHHHHHHH-H------------------------------------------hhCCCCCEEeCCCCCcCCHHH
Confidence            8884  43 122211 1                                          124678889999998 77788


Q ss_pred             hhhhhccCCCceEeccCcc-ccCCcCcccccccCCccccCCCCcccccCcccccCC-CCCCeeeccCCcccCCCCC
Q 048289          741 PEVVGKLNSLKGLNFSHNK-LTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSL-NFLQVLNLSQNQLVGPIPQ  814 (920)
Q Consensus       741 p~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~iP~  814 (920)
                      +..++.+++|+.|++++|. +.......++++++|++|++++| ++.   ..+..+ ..+..|++++|+++|.+|.
T Consensus       240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence            8888899999999999985 32222236788899999999988 332   234444 3477778899999988875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=7.4e-21  Score=198.21  Aligned_cols=211  Identities=21%  Similarity=0.277  Sum_probs=133.0

Q ss_pred             cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289          561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS  640 (920)
Q Consensus       561 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  640 (920)
                      .+.++++++.++. +|..+.  ++++.|+|++|++++..+..|.++++|++|++++|++++..+..|..+++|       
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------   85 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-------   85 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-------
Confidence            4556666666652 333332  355666666666665555555556666666666666655555555555554       


Q ss_pred             ceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289          641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME  720 (920)
Q Consensus       641 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (920)
                                         +.|++++|++++..+ ..+..                                        
T Consensus        86 -------------------~~L~L~~n~l~~~~~-~~~~~----------------------------------------  105 (251)
T 3m19_A           86 -------------------GTLGLANNQLASLPL-GVFDH----------------------------------------  105 (251)
T ss_dssp             -------------------CEEECTTSCCCCCCT-TTTTT----------------------------------------
T ss_pred             -------------------CEEECCCCcccccCh-hHhcc----------------------------------------
Confidence                               455555555443222 11111                                        


Q ss_pred             hhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCe
Q 048289          721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV  800 (920)
Q Consensus       721 ~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~  800 (920)
                        ++.|++|+|++|.+++..+..|+.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|++
T Consensus       106 --l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          106 --LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             --CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             --cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence              345678888888888777777888899999999999999888888999999999999999999888888999999999


Q ss_pred             eeccCCcccCCCCCCCCCCCCC------cccccCCcCCCCCCCCCCCCCC
Q 048289          801 LNLSQNQLVGPIPQGKQFHTFS------SDSYNGNMGLCGFPLSEKCSND  844 (920)
Q Consensus       801 L~ls~N~l~g~iP~~~~~~~~~------~~~~~~n~~lcg~~~~~~c~~~  844 (920)
                      |++++|++.+..+....+..+-      .....|+ .+|+.|....|...
T Consensus       184 L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          184 ITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             EECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             EEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            9999999987644322111110      0111233 36666666667654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=2.8e-22  Score=223.53  Aligned_cols=155  Identities=15%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             CCCCEEeCcCCcCC-ccCc---ccccCCCCCCEEEccCCcCcc-----cchhhhhcCCCCCEEECcCCCCC----Ccccc
Q 048289          251 SQLTYLDLSYNNFS-GHIP---STLSNLQQLRHLDLSNNKFTG-----QIPCIFANLTQLSFLDFSNNQLN----GPISS  317 (920)
Q Consensus       251 ~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~~~  317 (920)
                      ++|++|++++|.++ +.++   ..+..+++|++|++++|.+..     ..+..+..+++|++|++++|.++    ..++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            44555555555444 1222   234445555555555555541     12224455555555555555553    33444


Q ss_pred             cccCCCcCceeeccCcccccc----CCcccc--CCCCCCEEEccCCCCCC----Cchhhh-hcCCCCCEEEccCCcCCCc
Q 048289          318 SVSRLHSLVTIYLSYNSLNGT----IPSGLF--TSPLLESIDLRNNQLTG----SISNSI-SELVNLIDLSLSSNNLSGN  386 (920)
Q Consensus       318 ~l~~l~~L~~L~L~~n~l~~~----~~~~l~--~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~L~~n~l~~~  386 (920)
                      .+..+++|++|++++|.+++.    ++..+.  .+++|++|++++|.+++    .++..+ .++++|+.|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            555555555555555555433    344442  26667777777777765    355555 5567777777777777765


Q ss_pred             ch--hhhhhhcCCCceEEcCC
Q 048289          387 VE--LYMFAELKNLLGLDLSH  405 (920)
Q Consensus       387 ~~--~~~~~~l~~L~~L~Ls~  405 (920)
                      .+  ......+++++.+++..
T Consensus       319 ~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          319 DDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             SHHHHHHHHHHHHHTCCEECC
T ss_pred             hhHHHHHHHHhhhcCcchhhh
Confidence            53  33334445555444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=8.1e-21  Score=204.67  Aligned_cols=206  Identities=19%  Similarity=0.215  Sum_probs=128.6

Q ss_pred             CCcCeEeCCCCcCCCcCcccc--cccc-cceeecCCCcccccCC----ccccCCCcccEEEccCCccccccCccccCCCC
Q 048289          536 SSIFYVNLSNNSLNGMIPPCL--ANSS-LWFLDMRMNNFHGSIP----QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF  608 (920)
Q Consensus       536 ~~L~~L~Ls~n~l~~~~p~~~--~~~~-L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  608 (920)
                      ++|++|++++|.+.+..|..+  .... |++|++++|.+++..+    ..+..+++|++|+|++|++++..|..|..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445555555555555555544  3333 5555555555554333    23345667777777777776666667777777


Q ss_pred             CcEEECCCCccccc--C--chhhcCCCCCCEEEccCceeecccCCCc-ccCCCCCCcEEEccCCcCcCCCchHHHhhhhc
Q 048289          609 LEVLDVGNNRINGT--F--PAWLGALSELQVLILRSNRFHGPITYSV-TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQA  683 (920)
Q Consensus       609 L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~  683 (920)
                      |++|++++|++.+.  +  +..+..+++|++|++++|+++...+... ....+++|++||+++|++++.+|..+. .+. 
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~-  248 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCM-  248 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCC-
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hcc-
Confidence            77777777776542  1  1223566777777777777652211000 012356777777777777776664321 000 


Q ss_pred             cccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCC
Q 048289          684 MMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL  763 (920)
Q Consensus       684 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  763 (920)
                                                            .++.|++|+|++|+++ .+|..+.  ++|+.|+|++|++++.
T Consensus       249 --------------------------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          249 --------------------------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             --------------------------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             --------------------------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence                                                  0246788888888888 6677664  7889999999999875


Q ss_pred             cCcccccccCCccccCCCCcccc
Q 048289          764 IPYSLENLTQLESLDLSSNKVAG  786 (920)
Q Consensus       764 ip~~~~~l~~L~~L~Ls~N~l~g  786 (920)
                       |. +..+++|++|+|++|+++.
T Consensus       288 -~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 -PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -ch-hhhCCCccEEECcCCCCCC
Confidence             33 6778889999999998874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1e-19  Score=189.46  Aligned_cols=180  Identities=19%  Similarity=0.216  Sum_probs=156.0

Q ss_pred             ccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc
Q 048289          492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN  570 (920)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~  570 (920)
                      +.+.++++++.+...+...+++++.|++++|.+++..+..|.++++|++|++++|.+++..+..+.... |+.|++++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            455667777777666656677888899999999888888899999999999999999988887787777 9999999999


Q ss_pred             ccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCC
Q 048289          571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYS  650 (920)
Q Consensus       571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  650 (920)
                      +++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence            99888888999999999999999999877778899999999999999999877778999999999999999999766654


Q ss_pred             cccCCCCCCcEEEccCCcCcCCC
Q 048289          651 VTRFPFPKLRILDLSNNEFTGVL  673 (920)
Q Consensus       651 ~~~~~l~~L~~L~Ls~N~l~~~~  673 (920)
                      +  ..+++|+.|++++|++.+..
T Consensus       175 ~--~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          175 F--DRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             T--TTCTTCCEEECCSCCBCTTS
T ss_pred             H--hCCCCCCEEEeeCCceeCCc
Confidence            4  46789999999999999873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=1.3e-19  Score=192.59  Aligned_cols=175  Identities=29%  Similarity=0.302  Sum_probs=79.2

Q ss_pred             CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCc
Q 048289          180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS  259 (920)
Q Consensus       180 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  259 (920)
                      ++++|++++|.+.+..+..+..+++|++|++++| .+.... ..+.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCccc-CCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence            4444444444444333444444444444444444 222211 1123333444444444433 334444455555555555


Q ss_pred             CCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccC
Q 048289          260 YNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI  339 (920)
Q Consensus       260 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  339 (920)
                      +|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i  187 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence            55555444444555555555555555555444444445555555555555554443344444444444444444444 33


Q ss_pred             CccccCCCCCCEEEccCCC
Q 048289          340 PSGLFTSPLLESIDLRNNQ  358 (920)
Q Consensus       340 ~~~l~~l~~L~~L~L~~n~  358 (920)
                      |..+...+.|+.+++++|.
T Consensus       188 p~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCC
T ss_pred             ChhhcccccCCeEEeCCCC
Confidence            4444333344444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=2.2e-19  Score=190.89  Aligned_cols=207  Identities=22%  Similarity=0.173  Sum_probs=173.8

Q ss_pred             ccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCC-CcCCCCCCCEEEccCCcCcccccccccCCCCC
Q 048289          175 LTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP-KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL  253 (920)
Q Consensus       175 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  253 (920)
                      +++++++++++++++.++ .+|..+.  +++++|++++| .+.+..+ .+..+++|++|++++|.+++..+  .+.+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            567888999999999888 6676554  68999999999 5666555 78889999999999999886533  2788999


Q ss_pred             CEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCc
Q 048289          254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN  333 (920)
Q Consensus       254 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  333 (920)
                      ++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999998 67788889999999999999999777788999999999999999999887888889999999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchh
Q 048289          334 SLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL  389 (920)
Q Consensus       334 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  389 (920)
                      ++++..+..+..+++|++|++++|.++ .+|..+....+|+.+++++|++.+....
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            998544455677899999999999998 5677777788999999999988765443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.9e-20  Score=193.63  Aligned_cols=196  Identities=19%  Similarity=0.160  Sum_probs=131.2

Q ss_pred             ccceeecCCCcccccCCccccCCCcccEEEccCCc-cccccCccccCCCCCcEEECCC-CcccccCchhhcCCCCCCEEE
Q 048289          560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQ-LEGSVPLSLVNCSFLEVLDVGN-NRINGTFPAWLGALSELQVLI  637 (920)
Q Consensus       560 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~  637 (920)
                      .++.|++++|++++..+..|..+++|+.|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            47777777777777777778888888888888886 7766666788888888888887 888876667777888888888


Q ss_pred             ccCceeecccCCCcccCCCCCCc---EEEccCC-cCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEc
Q 048289          638 LRSNRFHGPITYSVTRFPFPKLR---ILDLSNN-EFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVK  713 (920)
Q Consensus       638 L~~N~l~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (920)
                      +++|++++ +|.   ...+++|+   .|++++| .+++..+ ..+.+                                 
T Consensus       112 l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~---------------------------------  153 (239)
T 2xwt_C          112 IFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTSIPV-NAFQG---------------------------------  153 (239)
T ss_dssp             EEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCEECT-TTTTT---------------------------------
T ss_pred             CCCCCCcc-ccc---cccccccccccEEECCCCcchhhcCc-ccccc---------------------------------
Confidence            88887775 343   23455555   7777777 5553322 21111                                 


Q ss_pred             cchhhhhhhccccc-EEEcCCCcCCCCchhhhhccCCCceEeccCcc-ccCCcCcccccc-cCCccccCCCCcccccCcc
Q 048289          714 GVNMEMEKVLNIFT-TIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNK-LTGLIPYSLENL-TQLESLDLSSNKVAGEIPW  790 (920)
Q Consensus       714 ~~~~~~~~~~~~l~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l-~~L~~L~Ls~N~l~g~ip~  790 (920)
                               ++.|+ .|++++|.++ .+|......++|+.|+|++|+ +++..+..|..+ ++|++||+++|++++..+.
T Consensus       154 ---------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          154 ---------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             ---------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             ---------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence                     34456 6777777776 444433333667777777774 766666667777 7777777777777643332


Q ss_pred             cccCCCCCCeeeccCC
Q 048289          791 QLTSLNFLQVLNLSQN  806 (920)
Q Consensus       791 ~l~~l~~L~~L~ls~N  806 (920)
                         .++.|+.|+++++
T Consensus       224 ---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          224 ---GLEHLKELIARNT  236 (239)
T ss_dssp             ---TCTTCSEEECTTC
T ss_pred             ---HhccCceeeccCc
Confidence               4556666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=9.2e-21  Score=207.19  Aligned_cols=255  Identities=19%  Similarity=0.177  Sum_probs=136.4

Q ss_pred             CCCCEEEcCCCCCCCCcchhccCC--CCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289          155 NELQELVLNSVDMSYEVPSFLTNL--SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM  232 (920)
Q Consensus       155 ~~L~~L~L~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  232 (920)
                      ..++.++++++.+.   +..+..+  ++++.|++++|.+.+.                         .+.+..+++|++|
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-------------------------~~~~~~~~~L~~L   98 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-------------------------LAEHFSPFRVQHM   98 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC-------------------------CCSCCCCBCCCEE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc-------------------------chhhccCCCCCEE
Confidence            34556666655544   3334444  5555555555555433                         3333334444444


Q ss_pred             EccCCcCccc-ccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCC-cCcc-cchhhhhcCCCCCEEECcCC
Q 048289          233 DLYGCNFMGS-IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN-KFTG-QIPCIFANLTQLSFLDFSNN  309 (920)
Q Consensus       233 ~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n  309 (920)
                      ++++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++|
T Consensus        99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B           99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            4444454433 5555566666666666666666555556666666666666666 4543 24555566666666666666


Q ss_pred             -CCCCc-ccccccCCC-cCceeeccCc--ccc-ccCCccccCCCCCCEEEccCCC-CCCCchhhhhcCCCCCEEEccCCc
Q 048289          310 -QLNGP-ISSSVSRLH-SLVTIYLSYN--SLN-GTIPSGLFTSPLLESIDLRNNQ-LTGSISNSISELVNLIDLSLSSNN  382 (920)
Q Consensus       310 -~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~  382 (920)
                       .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence             55543 344455566 6666666666  333 2344445556666666666666 554555566666666666666664


Q ss_pred             CCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcc-cccceeccCCCccCCCCC
Q 048289          383 LSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQ-HRLQILDLSDNQIRGGIP  461 (920)
Q Consensus       383 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~-~~L~~L~Ls~n~l~~~~~  461 (920)
                      -........+..+++|+.|++++| ++.                           +.+..+ ..++.|++++|++++..|
T Consensus       259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---------------------------~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          259 DIIPETLLELGEIPTLKTLQVFGI-VPD---------------------------GTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS-SCT---------------------------TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CCCHHHHHHHhcCCCCCEEeccCc-cCH---------------------------HHHHHHHhhCcceEEecccCccccC
Confidence            111111223444444555444444 211                           122222 235666677777777776


Q ss_pred             chhh
Q 048289          462 NWIW  465 (920)
Q Consensus       462 ~~~~  465 (920)
                      ..+.
T Consensus       311 ~~~~  314 (336)
T 2ast_B          311 PTIG  314 (336)
T ss_dssp             SSCS
T ss_pred             Cccc
Confidence            6553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=2.7e-20  Score=192.50  Aligned_cols=200  Identities=21%  Similarity=0.239  Sum_probs=118.7

Q ss_pred             CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCc-CCCcCcccccccccceeecCCCcccccCCccccCCCcccEE
Q 048289          510 LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS-LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL  588 (920)
Q Consensus       510 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  588 (920)
                      .++++++|++++|++++..+..|.++++|++|++++|+ +++..+..                       |.++++|++|
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----------------------f~~l~~L~~L   85 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----------------------FYNLSKVTHI   85 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-----------------------EESCTTCCEE
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-----------------------cCCCcCCcEE
Confidence            55567777777777776666667777777777777765 55433334                       4444445555


Q ss_pred             EccC-CccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCC---EEEccCc-eeecccCCCcccCCCCCCc-EE
Q 048289          589 NLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ---VLILRSN-RFHGPITYSVTRFPFPKLR-IL  662 (920)
Q Consensus       589 ~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L  662 (920)
                      ++++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+   +|++++| ++.+..+..+  ..+++|+ .|
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L  161 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTL  161 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEE
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEE
Confidence            5544 44444444444455555555555555443 333 44444444   5555555 4443333222  2355566 66


Q ss_pred             EccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCc-CCCCch
Q 048289          663 DLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK-FQGRIP  741 (920)
Q Consensus       663 ~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~ip  741 (920)
                      ++++|+++ .+|...+.                                           .+.|+.|++++|. +++..+
T Consensus       162 ~l~~n~l~-~i~~~~~~-------------------------------------------~~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          162 KLYNNGFT-SVQGYAFN-------------------------------------------GTKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             ECCSCCCC-EECTTTTT-------------------------------------------TCEEEEEECTTCTTCCEECT
T ss_pred             EcCCCCCc-ccCHhhcC-------------------------------------------CCCCCEEEcCCCCCcccCCH
Confidence            66666665 34432211                                           1356788888884 886667


Q ss_pred             hhhhcc-CCCceEeccCccccCCcCcccccccCCccccCCCCc
Q 048289          742 EVVGKL-NSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK  783 (920)
Q Consensus       742 ~~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~  783 (920)
                      ..|..+ ++|+.|++++|++++..+.   .+++|+.|+++++.
T Consensus       198 ~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          198 DAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             HHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            778888 8999999999999865443   56788888888763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.2e-19  Score=194.83  Aligned_cols=189  Identities=21%  Similarity=0.317  Sum_probs=133.9

Q ss_pred             cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289          561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS  640 (920)
Q Consensus       561 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  640 (920)
                      |+.|++++|.+... + .+..+++|+.|++++|++++..+  +..+++|++|++++|++++.  ..+..+++|++|++++
T Consensus        43 L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred             cCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence            55555555555432 2 35566677777777777764433  66677777777777776643  2466677777777777


Q ss_pred             ceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289          641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME  720 (920)
Q Consensus       641 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (920)
                      |++++..+    ...+++|+.|++++|++++..+   +..                                        
T Consensus       117 n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~----------------------------------------  149 (308)
T 1h6u_A          117 TQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAG----------------------------------------  149 (308)
T ss_dssp             SCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGG----------------------------------------
T ss_pred             CCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccC----------------------------------------
Confidence            77665322    2456778888888887765432   111                                        


Q ss_pred             hhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCe
Q 048289          721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV  800 (920)
Q Consensus       721 ~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~  800 (920)
                        ++.|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..|  +..+++|+.
T Consensus       150 --l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  221 (308)
T 1h6u_A          150 --LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI  221 (308)
T ss_dssp             --CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred             --CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCE
Confidence              3567888899998886544  8888999999999999987654  7889999999999999987664  788999999


Q ss_pred             eeccCCcccC
Q 048289          801 LNLSQNQLVG  810 (920)
Q Consensus       801 L~ls~N~l~g  810 (920)
                      |++++|++++
T Consensus       222 L~l~~N~i~~  231 (308)
T 1h6u_A          222 VTLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEccCCeeec
Confidence            9999999876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.3e-19  Score=198.60  Aligned_cols=241  Identities=18%  Similarity=0.171  Sum_probs=140.7

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcc-cccccc--cceeecCCCc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPP-CLANSS--LWFLDMRMNN  570 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~--L~~L~L~~n~  570 (920)
                      +++++++++++..+...++++++|++++|+|+...+.+|.++++|++|+|++|++.+.+|. .+....  ++.+.++.|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            4566677777765555567888888888888876667888888899888888888765553 334433  3334555566


Q ss_pred             ccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC-CcccccCchhhcCCCCCCEEEccCceeecccCC
Q 048289          571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN-NRINGTFPAWLGALSELQVLILRSNRFHGPITY  649 (920)
Q Consensus       571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  649 (920)
                      ++...|..|..+++|+.|++++|++++..+..+....++..|++.+ +++....+..|..+.                  
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~------------------  153 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS------------------  153 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB------------------
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc------------------
Confidence            6655566666666666666666666554444454555555555543 344433333333332                  


Q ss_pred             CcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEE
Q 048289          650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTI  729 (920)
Q Consensus       650 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  729 (920)
                             ..++.|++++|+++. +|...+.                                           ...++.+
T Consensus       154 -------~~l~~L~L~~N~i~~-i~~~~f~-------------------------------------------~~~L~~l  182 (350)
T 4ay9_X          154 -------FESVILWLNKNGIQE-IHNSAFN-------------------------------------------GTQLDEL  182 (350)
T ss_dssp             -------SSCEEEECCSSCCCE-ECTTSST-------------------------------------------TEEEEEE
T ss_pred             -------hhhhhhccccccccC-CChhhcc-------------------------------------------ccchhHH
Confidence                   234555555555543 2222111                                           1235666


Q ss_pred             EcCC-CcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCc
Q 048289          730 DLSG-NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQ  807 (920)
Q Consensus       730 ~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~  807 (920)
                      ++++ |.++...+..|+.+++|+.|||++|+|+...+..|.+|++|+.+++.+  + ..+| .+.++++|+.++++++.
T Consensus       183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~--l-~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--L-KKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT--C-CCCC-CTTTCCSCCEEECSCHH
T ss_pred             hhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC--c-CcCC-CchhCcChhhCcCCCCc
Confidence            6664 344432234567777777777777777765555555555555444322  2 2455 36677777777776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=7.7e-19  Score=188.64  Aligned_cols=195  Identities=25%  Similarity=0.341  Sum_probs=120.1

Q ss_pred             ccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289           74 LFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN  153 (920)
Q Consensus        74 l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~  153 (920)
                      ...+++|++|++++|.+..  ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|++..++      .+..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~------~~~~  105 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS------AIAG  105 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG------GGTT
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch------hhcC
Confidence            4567778888888877765  44 46777888888888887774 333 777777888887777654321      2344


Q ss_pred             CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEE
Q 048289          154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD  233 (920)
Q Consensus       154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  233 (920)
                      +++|++|++++|.+++..  .+..+++|++|++++|.+.+.                         . .+..+++|++|+
T Consensus       106 l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~-------------------------~-~l~~l~~L~~L~  157 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI-------------------------S-PLAGLTNLQYLS  157 (308)
T ss_dssp             CTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC-------------------------G-GGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcC-------------------------c-cccCCCCccEEE
Confidence            445555555555444321  144445555555555544422                         1 244445555555


Q ss_pred             ccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCC
Q 048289          234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG  313 (920)
Q Consensus       234 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (920)
                      +++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       158 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             ccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            55555554322  6677777777777777764332  6777777777777777775443  6777778888887777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=3.4e-19  Score=205.16  Aligned_cols=190  Identities=24%  Similarity=0.318  Sum_probs=142.9

Q ss_pred             CCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289          536 SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG  615 (920)
Q Consensus       536 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  615 (920)
                      .+++.|++++|.+++ +|..+. ..|+.|++++|+++ .+|   ..+++|+.|+|++|++++ +|. +.+  +|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            388999999999886 666543 34899999999888 455   446888999999998886 666 554  88899999


Q ss_pred             CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCC
Q 048289          616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGG  695 (920)
Q Consensus       616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~  695 (920)
                      +|++++ +|.   .+++|++|++++|++++ +|.     .+++|+.|++++|++++ +|. +                  
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-lp~-l------------------  178 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-LPE-L------------------  178 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C------------------
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-cch-h------------------
Confidence            998886 555   57888888888888876 443     35788888888888876 553 1                  


Q ss_pred             cceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCC-------ceEeccCccccCCcCccc
Q 048289          696 NMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSL-------KGLNFSHNKLTGLIPYSL  768 (920)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~~  768 (920)
                                                 .+.|+.|+|++|.|+ .+|. +..  +|       +.|+|++|+|+ .+|..+
T Consensus       179 ---------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          179 ---------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             ---------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             ---------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence                                       134678888888888 5666 554  66       88888888887 467777


Q ss_pred             ccccCCccccCCCCcccccCcccccCCCC
Q 048289          769 ENLTQLESLDLSSNKVAGEIPWQLTSLNF  797 (920)
Q Consensus       769 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~  797 (920)
                      ..+++|+.|+|++|++++.+|..+..++.
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            77888888888888888888887776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=6.4e-19  Score=177.80  Aligned_cols=174  Identities=20%  Similarity=0.247  Sum_probs=148.8

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCccc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFH  572 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~  572 (920)
                      +.++++++.++......++++++|++++|++++..+..|..+++|++|++++|++++..+..+.... |++|++++|+++
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            3556666666655555567888888888888877777788999999999999999877666666666 999999999999


Q ss_pred             ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289          573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT  652 (920)
Q Consensus       573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  652 (920)
                      +..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+       
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------  162 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------  162 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence            8888888999999999999999998877889999999999999999998777778999999999999998873       


Q ss_pred             cCCCCCCcEEEccCCcCcCCCchH
Q 048289          653 RFPFPKLRILDLSNNEFTGVLPTR  676 (920)
Q Consensus       653 ~~~l~~L~~L~Ls~N~l~~~~p~~  676 (920)
                        .+++|+.|+++.|+++|.+|..
T Consensus       163 --~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          163 --TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             --CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             --CCCCHHHHHHHHHhCCceeecc
Confidence              4678999999999999999965

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.4e-18  Score=175.43  Aligned_cols=196  Identities=19%  Similarity=0.215  Sum_probs=133.0

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR  618 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (920)
                      +.++.+++.++. +|..+. ..+++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        10 ~~v~c~~~~l~~-~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSS-CCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccC-CCCCCC-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            345555555542 333221 136777777777776666667777777777777777776666667777778888888887


Q ss_pred             ccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcce
Q 048289          619 INGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY  698 (920)
Q Consensus       619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~  698 (920)
                      +++..+..|..+++|++|++++|++++..+..+  ..+++|+.|++++|++++..+ ..+..                  
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~-~~~~~------------------  146 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPD-GVFDR------------------  146 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCT-TTTTT------------------
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccceeCH-HHhcc------------------
Confidence            776666667777788888888887775544333  456778888888888775433 22211                  


Q ss_pred             eccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcccc
Q 048289          699 INYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD  778 (920)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  778 (920)
                                              ++.|+.|++++|.+.+.       ++.|+.|+++.|+++|.+|..++.++.    +
T Consensus       147 ------------------------l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~  191 (208)
T 2o6s_A          147 ------------------------LTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----D  191 (208)
T ss_dssp             ------------------------CTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----T
T ss_pred             ------------------------CCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC----C
Confidence                                    35678888888887754       457888899999999999988887765    5


Q ss_pred             CCCCcccccCcccc
Q 048289          779 LSSNKVAGEIPWQL  792 (920)
Q Consensus       779 Ls~N~l~g~ip~~l  792 (920)
                      +..+...|..+..+
T Consensus       192 ~~~C~~~~~~~~~~  205 (208)
T 2o6s_A          192 SAKCSGSGKPVRSI  205 (208)
T ss_dssp             CSBBTTTCCBGGGC
T ss_pred             ccccccCCCcceee
Confidence            66666666555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=2.1e-18  Score=189.09  Aligned_cols=231  Identities=16%  Similarity=0.115  Sum_probs=168.8

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccC-ccccCCCCCcE-EECCC
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP-LSLVNCSFLEV-LDVGN  616 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~-L~L~~  616 (920)
                      ++++.++++++ .+|..+. ..+++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~-~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC-TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC-CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            46777777777 4565442 238889999999987777889999999999999999876555 57888888765 66778


Q ss_pred             CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289          617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN  696 (920)
Q Consensus       617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  696 (920)
                      |+++...|..|..+++|++|++++|++.+..+...  ....++..+++.++.-...+|...+..                
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~~----------------  151 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVG----------------  151 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSSTT----------------
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccchhh----------------
Confidence            99998888899999999999999999886554433  345678888887654333444332211                


Q ss_pred             ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccC-ccccCCcCcccccccCCc
Q 048289          697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH-NKLTGLIPYSLENLTQLE  775 (920)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~ip~~~~~l~~L~  775 (920)
                                               ....++.|+|++|+|+. +|.......+|+.|++++ |.++...+++|+.+++|+
T Consensus       152 -------------------------~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~  205 (350)
T 4ay9_X          152 -------------------------LSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV  205 (350)
T ss_dssp             -------------------------SBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred             -------------------------cchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence                                     12357889999999994 665555667899999986 666655556889999999


Q ss_pred             cccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCC
Q 048289          776 SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQF  818 (920)
Q Consensus       776 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  818 (920)
                      +|||++|+|+...+..|.+|+   .|.+.++.--..+|.-..+
T Consensus       206 ~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP~l~~l  245 (350)
T 4ay9_X          206 ILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLPTLEKL  245 (350)
T ss_dssp             EEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCCCTTTC
T ss_pred             hhhcCCCCcCccChhhhccch---HhhhccCCCcCcCCCchhC
Confidence            999999999976666665554   5555544434477754333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=2.5e-18  Score=197.99  Aligned_cols=210  Identities=20%  Similarity=0.295  Sum_probs=123.4

Q ss_pred             ccCCCCCCCCCc-----cccce-EecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCC
Q 048289           29 KMISWKEEKDCC-----SWDGV-TCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRF  102 (920)
Q Consensus        29 ~l~~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l  102 (920)
                      .+.+|....++|     .|.|+ .|..  ++++.|+|+++.+.+ +|.  .+  +++|++|+|++|.++.  +|   ..+
T Consensus        32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l   99 (571)
T 3cvr_A           32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELP   99 (571)
T ss_dssp             HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCC
T ss_pred             HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---ccc
Confidence            466787677778     79999 7863  579999999999886 665  34  3789999999998884  67   457


Q ss_pred             CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCC
Q 048289          103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLT  182 (920)
Q Consensus       103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~  182 (920)
                      ++|++|+|++|.+++ +|. +.+  +|++|++++|.+..++.        .+                        ++|+
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~--------~l------------------------~~L~  143 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE--------LP------------------------ALLE  143 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC--------CC------------------------TTCC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC--------cC------------------------cccc
Confidence            889999999998885 666 654  88888888886654322        23                        4444


Q ss_pred             EEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccC-----CCCCCEEe
Q 048289          183 SLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN-----LSQLTYLD  257 (920)
Q Consensus       183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~  257 (920)
                      +|++++|.+++ +|.   .+++|++|++++| .+.+ +|.+.  ++|++|++++|.++ .+|. +..     .+.|++|+
T Consensus       144 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~L~~-lp~l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~  213 (571)
T 3cvr_A          144 YINADNNQLTM-LPE---LPTSLEVLSVRNN-QLTF-LPELP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFR  213 (571)
T ss_dssp             EEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSC-CCCCC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEE
T ss_pred             EEeCCCCccCc-CCC---cCCCcCEEECCCC-CCCC-cchhh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEe
Confidence            44444444442 332   2344444444444 2222 11111  33444444444433 2333 222     11125555


Q ss_pred             CcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhc
Q 048289          258 LSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN  297 (920)
Q Consensus       258 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  297 (920)
                      +++|.++ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus       214 Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             cCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            5555555 34544555555555555555555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=167.48  Aligned_cols=160  Identities=19%  Similarity=0.174  Sum_probs=92.6

Q ss_pred             eEecccCcCCCCCCCCCCCCceEEecCceecccCc-ccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289          495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG  573 (920)
Q Consensus       495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~  573 (920)
                      .+++++|.++..+...++.+++|++++|++++..+ ..|..+++|++|++++|+++                       +
T Consensus        15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-----------------------~   71 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-----------------------D   71 (220)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-----------------------E
T ss_pred             EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-----------------------E
Confidence            45555555544333334445555555555554433 33455555555555555554                       4


Q ss_pred             cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289          574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTR  653 (920)
Q Consensus       574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  653 (920)
                      ..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+  
T Consensus        72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--  149 (220)
T 2v70_A           72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--  149 (220)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--
T ss_pred             ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--
Confidence            444455556666666666666665555556666666666666666666556666666666666666666665555444  


Q ss_pred             CCCCCCcEEEccCCcCcCCCchHHHh
Q 048289          654 FPFPKLRILDLSNNEFTGVLPTRYFQ  679 (920)
Q Consensus       654 ~~l~~L~~L~Ls~N~l~~~~p~~~~~  679 (920)
                      ..+++|+.|++++|++.+..+..++.
T Consensus       150 ~~l~~L~~L~L~~N~l~c~c~l~~l~  175 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFNCNCYLAWLG  175 (220)
T ss_dssp             TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred             cCCCCCCEEEecCcCCcCCCchHHHH
Confidence            34666777777777777766655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.2e-17  Score=177.69  Aligned_cols=186  Identities=21%  Similarity=0.335  Sum_probs=130.7

Q ss_pred             eecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCcee
Q 048289          564 LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF  643 (920)
Q Consensus       564 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  643 (920)
                      +.+..+.+++..+  +..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            3444444443322  23456666777777766633 2 36666777777777777765443  66777777777777776


Q ss_pred             ecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhc
Q 048289          644 HGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVL  723 (920)
Q Consensus       644 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (920)
                      ++...    ...+++|+.|++++|++++. + . +.                                          .+
T Consensus       103 ~~~~~----l~~l~~L~~L~L~~n~i~~~-~-~-l~------------------------------------------~l  133 (291)
T 1h6t_A          103 KDLSS----LKDLKKLKSLSLEHNGISDI-N-G-LV------------------------------------------HL  133 (291)
T ss_dssp             CCGGG----GTTCTTCCEEECTTSCCCCC-G-G-GG------------------------------------------GC
T ss_pred             CCChh----hccCCCCCEEECCCCcCCCC-h-h-hc------------------------------------------CC
Confidence            65211    24567788888888877652 2 1 11                                          14


Q ss_pred             ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL  803 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  803 (920)
                      +.|+.|++++|.+++.  ..++.+++|+.|+|++|++++..|  +..+++|++|++++|++++. | .+..+++|+.|++
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l  207 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL  207 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence            5678899999998875  568889999999999999988766  88999999999999999864 4 4889999999999


Q ss_pred             cCCcccC
Q 048289          804 SQNQLVG  810 (920)
Q Consensus       804 s~N~l~g  810 (920)
                      ++|+++.
T Consensus       208 ~~n~i~~  214 (291)
T 1h6t_A          208 FSQECLN  214 (291)
T ss_dssp             EEEEEEC
T ss_pred             cCCcccC
Confidence            9999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=3.7e-17  Score=166.00  Aligned_cols=160  Identities=20%  Similarity=0.247  Sum_probs=86.1

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG  573 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~  573 (920)
                      +.++++++.++..+...+++++.|++++|.+++..+..|..+++|++|++++|++++..|..+                 
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-----------------   76 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-----------------   76 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-----------------
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-----------------
Confidence            345555555555444445566666666666666666666666666666666666665444444                 


Q ss_pred             cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCccc
Q 048289          574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTR  653 (920)
Q Consensus       574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  653 (920)
                            .++++|++|+|++|+++...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+  
T Consensus        77 ------~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--  148 (220)
T 2v9t_B           77 ------QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--  148 (220)
T ss_dssp             ------TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--
T ss_pred             ------hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--
Confidence                  444445555555555543333344445555555555555554444445555555555555555544333222  


Q ss_pred             CCCCCCcEEEccCCcCcCCCchHHH
Q 048289          654 FPFPKLRILDLSNNEFTGVLPTRYF  678 (920)
Q Consensus       654 ~~l~~L~~L~Ls~N~l~~~~p~~~~  678 (920)
                      ..+++|+.|++++|++.+.....++
T Consensus       149 ~~l~~L~~L~L~~N~~~c~c~l~~l  173 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPFICDCHLKWL  173 (220)
T ss_dssp             TTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             hCCCCCCEEEeCCCCcCCCCccHHH
Confidence            2345566666666666655444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=8.9e-17  Score=163.21  Aligned_cols=144  Identities=24%  Similarity=0.293  Sum_probs=120.9

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCC-ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIP-QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN  617 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (920)
                      +.+++++|.++. +|..+. ..++.|++++|++++..+ ..|..+++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus        14 ~~l~~s~n~l~~-iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCccc-CccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            478888888874 555432 227889999999988755 56899999999999999999888889999999999999999


Q ss_pred             cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccC
Q 048289          618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHG  687 (920)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~  687 (920)
                      ++++..+..|..+++|++|+|++|++++..|..+  ..+++|+.|+|++|++++..|.. +..++.+...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L  158 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF--IGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTL  158 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS--TTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc--CCCccCCEEECCCCcCCEECHHH-hcCCCCCCEE
Confidence            9998888889999999999999999998877766  56899999999999999877744 5555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=2.6e-17  Score=191.82  Aligned_cols=191  Identities=24%  Similarity=0.309  Sum_probs=130.4

Q ss_pred             CcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC
Q 048289          537 SIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG  615 (920)
Q Consensus       537 ~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  615 (920)
                      .+..+.+..+.+....+  +.... |+.|++++|.+... + .+..+++|+.|+|++|++++..|  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            45556677776664433  23334 88888888887754 2 47778888888888888876554  7778888888888


Q ss_pred             CCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCC
Q 048289          616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGG  695 (920)
Q Consensus       616 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~  695 (920)
                      +|++++ +| .+..+++|+.|+|++|++.+. +   ....+++|+.|+|++|++++. +  .+.                
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l-~--~l~----------------  150 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N---GLVHLPQLESLYLGNNKITDI-T--VLS----------------  150 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G---GGGGCTTCSEEECCSSCCCCC-G--GGG----------------
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c---cccCCCccCEEECCCCccCCc-h--hhc----------------
Confidence            888874 23 577778888888888877653 1   124567777777777777653 1  111                


Q ss_pred             cceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCc
Q 048289          696 NMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLE  775 (920)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~  775 (920)
                                                .++.|+.|+|++|.+++..|  +..+++|+.|+|++|+|++.  ..+..+++|+
T Consensus       151 --------------------------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~  200 (605)
T 1m9s_A          151 --------------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLD  200 (605)
T ss_dssp             --------------------------SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCS
T ss_pred             --------------------------ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCC
Confidence                                      13556777777777776655  77777777777777777764  3577777777


Q ss_pred             cccCCCCcccccC
Q 048289          776 SLDLSSNKVAGEI  788 (920)
Q Consensus       776 ~L~Ls~N~l~g~i  788 (920)
                      .|+|++|++++..
T Consensus       201 ~L~L~~N~l~~~p  213 (605)
T 1m9s_A          201 VLELFSQECLNKP  213 (605)
T ss_dssp             EEECCSEEEECCC
T ss_pred             EEEccCCcCcCCc
Confidence            7777777777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.1e-16  Score=162.44  Aligned_cols=143  Identities=21%  Similarity=0.281  Sum_probs=121.1

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR  618 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (920)
                      +.++++++.++. +|..+. ..++.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+
T Consensus        14 ~~v~c~~~~l~~-iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCc-CCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            567888888773 555443 349999999999998888899999999999999999999999999999999999999999


Q ss_pred             ccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhcccc
Q 048289          619 INGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH  686 (920)
Q Consensus       619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~  686 (920)
                      ++...+..|..+++|++|+|++|++++..+..+  ..+++|+.|+|++|++++..+ ..+..++.+..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~  156 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAF--QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQT  156 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHc--CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCE
Confidence            997777778999999999999999998877665  568999999999999997655 44555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=1.8e-16  Score=162.15  Aligned_cols=156  Identities=19%  Similarity=0.186  Sum_probs=92.3

Q ss_pred             cceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCccc
Q 048289          493 LRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFH  572 (920)
Q Consensus       493 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~  572 (920)
                      -+.++++++.+...+...+++|++|++++|.+++..|..|..+++|++|++++|++.+..                    
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~--------------------   80 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--------------------   80 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------------------
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--------------------
Confidence            345666666665555545566677777777777666666666777777777666665433                    


Q ss_pred             ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289          573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT  652 (920)
Q Consensus       573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  652 (920)
                         +..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+ 
T Consensus        81 ---~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~-  155 (229)
T 3e6j_A           81 ---VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF-  155 (229)
T ss_dssp             ---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT-
T ss_pred             ---hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH-
Confidence               334445555555555555555544455555556666666666655 445555556666666666665554333222 


Q ss_pred             cCCCCCCcEEEccCCcCcCCCc
Q 048289          653 RFPFPKLRILDLSNNEFTGVLP  674 (920)
Q Consensus       653 ~~~l~~L~~L~Ls~N~l~~~~p  674 (920)
                       ..+++|+.|++++|++.+..+
T Consensus       156 -~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          156 -DRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             -TTCTTCCEEECTTSCBCTTBG
T ss_pred             -hCCCCCCEEEeeCCCccCCcc
Confidence             345667777777777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=2.9e-17  Score=180.66  Aligned_cols=179  Identities=22%  Similarity=0.194  Sum_probs=141.5

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCccccc-CCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFC-NMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF  571 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l  571 (920)
                      +.++++++.++..+...++.++.|++++|++++..+..+. ++++|+.|++++|++++..+..+.... |+.|+|++|++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            4566666666665555566788888888888887777777 889999999999999877777777777 99999999999


Q ss_pred             cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhh---cCCCCCCEEEccCceeecccC
Q 048289          572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWL---GALSELQVLILRSNRFHGPIT  648 (920)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~~  648 (920)
                      ++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|   ..+++|+.|+|++|++++..+
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence            88888889999999999999999998888899999999999999999986555555   568999999999999875432


Q ss_pred             CCcccCCCCC--CcEEEccCCcCcCCCc
Q 048289          649 YSVTRFPFPK--LRILDLSNNEFTGVLP  674 (920)
Q Consensus       649 ~~~~~~~l~~--L~~L~Ls~N~l~~~~p  674 (920)
                      ..+  ..++.  ++.|+|++|++.+...
T Consensus       181 ~~~--~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          181 TDL--QKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             HHH--HHSCHHHHTTEECCSSCEECCHH
T ss_pred             HHh--hhccHhhcceEEecCCCccCCcC
Confidence            222  22444  4789999999987654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=1.2e-16  Score=186.29  Aligned_cols=196  Identities=18%  Similarity=0.209  Sum_probs=144.8

Q ss_pred             CCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEcc
Q 048289          513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLN  591 (920)
Q Consensus       513 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  591 (920)
                      .+..+.+..+.+....+  +..++.|+.|++++|.+... + .+..++ |+.|+|++|++++..+  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            34455566666654433  45678888888888888743 3 355555 8889998888887655  7888888999999


Q ss_pred             CCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289          592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG  671 (920)
Q Consensus       592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  671 (920)
                      +|.+++ +| .+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++.  .  ....+++|+.|+|++|++.+
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCC
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h--hhcccCCCCEEECcCCcCCC
Confidence            888875 33 688888899999999888853  4578888899999988888764  1  23467888899999888887


Q ss_pred             CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCc
Q 048289          672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK  751 (920)
Q Consensus       672 ~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~  751 (920)
                      ..|   +..                                          ++.|+.|+|++|.+++. | .+..+++|+
T Consensus       168 ~~~---l~~------------------------------------------l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~  200 (605)
T 1m9s_A          168 IVP---LAG------------------------------------------LTKLQNLYLSKNHISDL-R-ALAGLKNLD  200 (605)
T ss_dssp             CGG---GTT------------------------------------------CTTCCEEECCSSCCCBC-G-GGTTCTTCS
T ss_pred             chh---hcc------------------------------------------CCCCCEEECcCCCCCCC-h-HHccCCCCC
Confidence            555   221                                          35678888888888864 3 588888889


Q ss_pred             eEeccCccccCCcCcccc
Q 048289          752 GLNFSHNKLTGLIPYSLE  769 (920)
Q Consensus       752 ~L~Ls~N~l~~~ip~~~~  769 (920)
                      .|+|++|++++.....+.
T Consensus       201 ~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          201 VLELFSQECLNKPINHQS  218 (605)
T ss_dssp             EEECCSEEEECCCCCCCS
T ss_pred             EEEccCCcCcCCcccccc
Confidence            999998888876443333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=7.5e-16  Score=157.50  Aligned_cols=144  Identities=20%  Similarity=0.243  Sum_probs=119.8

Q ss_pred             cCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289          538 IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN  617 (920)
Q Consensus       538 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (920)
                      .+.++.+++.++ .+|..+. ..|+.|++++|++++..|..|..+++|+.|+|++|+++...+..|..+++|++|+|++|
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            456788888776 4554433 34999999999999988999999999999999999998777788899999999999999


Q ss_pred             cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccC
Q 048289          618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHG  687 (920)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~  687 (920)
                      ++++..+..|..+++|++|++++|+++ .+|..+  ..+++|+.|++++|++++..+ ..+..++.+...
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L  164 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI--ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHA  164 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG--GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCccc--ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEE
Confidence            999888888999999999999999998 566655  568999999999999996544 555666655543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=2.1e-16  Score=173.85  Aligned_cols=172  Identities=21%  Similarity=0.148  Sum_probs=137.5

Q ss_pred             EEECCCCcCcCccCCCCcccceEecccCcCCCCCCC----CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCC
Q 048289          474 HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF----LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN  549 (920)
Q Consensus       474 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (920)
                      .++++++.++.++......++.|++++|++++..+.    ..++|++|++++|+|++..+..|.++++|++|++++|+++
T Consensus        22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH  101 (361)
T ss_dssp             EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence            444445555444443344556666666665554332    3568899999999999888889999999999999999999


Q ss_pred             CcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccc---cCCCCCcEEECCCCcccccCch
Q 048289          550 GMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSL---VNCSFLEVLDVGNNRINGTFPA  625 (920)
Q Consensus       550 ~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~  625 (920)
                      +..+..+.... |+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|   ..+++|+.|+|++|++++..+.
T Consensus       102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred             cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence            87777787777 9999999999999999999999999999999999997555555   5799999999999999977777


Q ss_pred             hhcCCCC--CCEEEccCceeec
Q 048289          626 WLGALSE--LQVLILRSNRFHG  645 (920)
Q Consensus       626 ~l~~l~~--L~~L~L~~N~l~~  645 (920)
                      .+..++.  ++.|+|++|++..
T Consensus       182 ~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHHHSCHHHHTTEECCSSCEEC
T ss_pred             HhhhccHhhcceEEecCCCccC
Confidence            8888887  4899999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=8.9e-16  Score=163.14  Aligned_cols=149  Identities=26%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             cCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 048289          176 TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY  255 (920)
Q Consensus       176 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  255 (920)
                      ..+++|++|++++|.+++.. . +..+++|++|++++| .+.. ++.+..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~  138 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDEN-KVKD-LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES  138 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSS-CCCC-GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred             hcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCC-cCCC-ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence            33444444444444443221 1 444444444444444 2221 12233333333333333333321  23444555555


Q ss_pred             EeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccc
Q 048289          256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL  335 (920)
Q Consensus       256 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  335 (920)
                      |++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|.+
T Consensus       139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred             EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcc
Confidence            55555555532  345555555555555555554333  45555555555555555432 1 244445555555555544


Q ss_pred             c
Q 048289          336 N  336 (920)
Q Consensus       336 ~  336 (920)
                      .
T Consensus       213 ~  213 (291)
T 1h6t_A          213 L  213 (291)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2.8e-17  Score=196.75  Aligned_cols=191  Identities=19%  Similarity=0.220  Sum_probs=89.1

Q ss_pred             CCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecc
Q 048289          567 RMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP  646 (920)
Q Consensus       567 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  646 (920)
                      ..|++. ..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|+++++|++|+|++|+++ .
T Consensus       209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence            334443 44555666666666666666666 45555556666666666666666 56666666666666666666666 4


Q ss_pred             cCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccc
Q 048289          647 ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIF  726 (920)
Q Consensus       647 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  726 (920)
                      +|..+  ..+++|++|+|++|.++ .+|.. +.+                                          ++.|
T Consensus       285 lp~~~--~~l~~L~~L~L~~N~l~-~lp~~-~~~------------------------------------------l~~L  318 (727)
T 4b8c_D          285 LPAEL--GSCFQLKYFYFFDNMVT-TLPWE-FGN------------------------------------------LCNL  318 (727)
T ss_dssp             CCSSG--GGGTTCSEEECCSSCCC-CCCSS-TTS------------------------------------------CTTC
T ss_pred             cChhh--cCCCCCCEEECCCCCCC-ccChh-hhc------------------------------------------CCCc
Confidence            45444  34566666666666665 44533 211                                          3455


Q ss_pred             cEEEcCCCcCCCCchhhhhccCCC-ceEeccCccccCCcCcccccccCCccccCCCC--------cccccCcccccCCCC
Q 048289          727 TTIDLSGNKFQGRIPEVVGKLNSL-KGLNFSHNKLTGLIPYSLENLTQLESLDLSSN--------KVAGEIPWQLTSLNF  797 (920)
Q Consensus       727 ~~L~Ls~N~l~~~ip~~l~~l~~L-~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N--------~l~g~ip~~l~~l~~  797 (920)
                      +.|+|++|.|++.+|..++.+... ..|+|++|.++|.+|..      |+.|++++|        .+.+.++..+..+..
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~  392 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAK  392 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccc
Confidence            667777777777777666554322 23677777777777754      344555555        444555555666677


Q ss_pred             CCeeeccCCcccCCCC
Q 048289          798 LQVLNLSQNQLVGPIP  813 (920)
Q Consensus       798 L~~L~ls~N~l~g~iP  813 (920)
                      +....+++|-+++...
T Consensus       393 ~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          393 RTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             ---------CCCGGGC
T ss_pred             cceeeeeccccccccC
Confidence            7777788887765443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=6.5e-17  Score=160.43  Aligned_cols=113  Identities=26%  Similarity=0.402  Sum_probs=93.6

Q ss_pred             cccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeee
Q 048289          723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLN  802 (920)
Q Consensus       723 ~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  802 (920)
                      ++.|+.|+|++|.+++..|..|+.+++|+.|+|++|+|++..|..|+.+++|++|+|++|++++.+|..|..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45678999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccCCCCCCCCCCC-CCcccccCCcCCCCCC
Q 048289          803 LSQNQLVGPIPQGKQFHT-FSSDSYNGNMGLCGFP  836 (920)
Q Consensus       803 ls~N~l~g~iP~~~~~~~-~~~~~~~~n~~lcg~~  836 (920)
                      +++|+++|..|... +.. +....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence            99999998876321 111 1122334555566655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=9e-17  Score=168.01  Aligned_cols=167  Identities=21%  Similarity=0.275  Sum_probs=102.9

Q ss_pred             cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289          561 LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS  640 (920)
Q Consensus       561 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  640 (920)
                      +..+++++|.+++..  .+..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            555566666665433  34555666666666666653 33 45556666666666666654333  55555555555555


Q ss_pred             ceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhh
Q 048289          641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME  720 (920)
Q Consensus       641 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (920)
                      |+++                          + +|...                                           
T Consensus        95 N~l~--------------------------~-l~~~~-------------------------------------------  104 (263)
T 1xeu_A           95 NRLK--------------------------N-LNGIP-------------------------------------------  104 (263)
T ss_dssp             SCCS--------------------------C-CTTCC-------------------------------------------
T ss_pred             CccC--------------------------C-cCccc-------------------------------------------
Confidence            5444                          3 11000                                           


Q ss_pred             hhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCe
Q 048289          721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQV  800 (920)
Q Consensus       721 ~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~  800 (920)
                        .+.|+.|++++|.+++. | .++.+++|+.|+|++|++++. | .++.+++|++|++++|++++.  ..+..+++|++
T Consensus       105 --~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~  176 (263)
T 1xeu_A          105 --SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW  176 (263)
T ss_dssp             --CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred             --cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence              02356677777777653 3 477777777777877777765 3 577778888888888887776  56777888888


Q ss_pred             eeccCCcccCC
Q 048289          801 LNLSQNQLVGP  811 (920)
Q Consensus       801 L~ls~N~l~g~  811 (920)
                      |++++|++++.
T Consensus       177 L~l~~N~~~~~  187 (263)
T 1xeu_A          177 IDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEECC
T ss_pred             EeCCCCcccCC
Confidence            88888887755

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.1e-18  Score=199.94  Aligned_cols=185  Identities=24%  Similarity=0.288  Sum_probs=128.9

Q ss_pred             CCcccEEEccCCccccccCccccCCCCCcEEECCCCc-------------ccccCchhhcCCCCCCEEE-ccCceeeccc
Q 048289          582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR-------------INGTFPAWLGALSELQVLI-LRSNRFHGPI  647 (920)
Q Consensus       582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~-L~~N~l~~~~  647 (920)
                      +++|+.|+|++|+++ .+|..+++|++|++|++++|.             +.+..|..++.+++|+.|+ ++.|.+....
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            444555555555554 445555555555555554443             3445555666666666666 4444322100


Q ss_pred             CC-----CcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhh
Q 048289          648 TY-----SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKV  722 (920)
Q Consensus       648 ~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  722 (920)
                      ..     .+.......|+.|++++|.+++ +|.  +..                                          
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~--~~~------------------------------------------  461 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH--LEQ------------------------------------------  461 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC--GGG------------------------------------------
T ss_pred             hhhhhcccccccCccCceEEEecCCCCCC-CcC--ccc------------------------------------------
Confidence            00     0000112358899999999986 553  222                                          


Q ss_pred             cccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccC-cccccCCCCCCee
Q 048289          723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI-PWQLTSLNFLQVL  801 (920)
Q Consensus       723 ~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L  801 (920)
                      ++.|+.|+|++|.|+ .+|..++.+++|+.|+|++|+|++ +| .++.+++|++|+|++|+|++.+ |..+..+++|++|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            356789999999999 789999999999999999999998 57 8999999999999999999987 9999999999999


Q ss_pred             eccCCcccCCCCCC
Q 048289          802 NLSQNQLVGPIPQG  815 (920)
Q Consensus       802 ~ls~N~l~g~iP~~  815 (920)
                      ++++|+++|.+|..
T Consensus       539 ~L~~N~l~~~~~~~  552 (567)
T 1dce_A          539 NLQGNSLCQEEGIQ  552 (567)
T ss_dssp             ECTTSGGGGSSSCT
T ss_pred             EecCCcCCCCccHH
Confidence            99999999887643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.1e-16  Score=167.23  Aligned_cols=170  Identities=22%  Similarity=0.303  Sum_probs=123.9

Q ss_pred             CCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEE
Q 048289          534 NMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVL  612 (920)
Q Consensus       534 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  612 (920)
                      .+..+..+++++|.+++..  .+.... |+.|++++|.++.. + .+..+++|+.|+|++|++++..+  +..+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            4567888899999998543  355555 99999999999854 4 68899999999999999997655  9999999999


Q ss_pred             ECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCC
Q 048289          613 DVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA  692 (920)
Q Consensus       613 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~  692 (920)
                      ++++|++++. |.. .. ++|++|++++|++++. + .  ...                                     
T Consensus        91 ~L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~-~-~--l~~-------------------------------------  126 (263)
T 1xeu_A           91 SVNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT-D-S--LIH-------------------------------------  126 (263)
T ss_dssp             ECCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS-G-G--GTT-------------------------------------
T ss_pred             ECCCCccCCc-Ccc-cc-CcccEEEccCCccCCC-h-h--hcC-------------------------------------
Confidence            9999999863 322 12 5555555555554431 0 0  111                                     


Q ss_pred             CCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCccccccc
Q 048289          693 EGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT  772 (920)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~  772 (920)
                                                    ++.|+.|++++|++++. | .++.+++|+.|+|++|++++.  ..+..++
T Consensus       127 ------------------------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~  172 (263)
T 1xeu_A          127 ------------------------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLK  172 (263)
T ss_dssp             ------------------------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCC
T ss_pred             ------------------------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCC
Confidence                                          34566777777777654 3 577777888888888888776  6677788


Q ss_pred             CCccccCCCCccccc
Q 048289          773 QLESLDLSSNKVAGE  787 (920)
Q Consensus       773 ~L~~L~Ls~N~l~g~  787 (920)
                      +|+.|++++|++++.
T Consensus       173 ~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          173 KVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCEEEEEEEEEECC
T ss_pred             CCCEEeCCCCcccCC
Confidence            888888888887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=2.8e-18  Score=198.93  Aligned_cols=205  Identities=19%  Similarity=0.144  Sum_probs=136.7

Q ss_pred             CCCCcCceEeeeccCCcCCchhhhcccccceeccCCCc-------------cCCCCCchhhccCCCCCcEEECCCCcCcC
Q 048289          418 SSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQ-------------IRGGIPNWIWNVGKDTLNHLNLSHNFLTG  484 (920)
Q Consensus       418 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  484 (920)
                      ...+.|+.|++++|.++.+|+.++.+++|+.|++++|.             ..+..|..+.  .                
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~----------------  407 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--Y----------------  407 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--H----------------
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--H----------------
Confidence            45778899999999999999999999999999998775             2222232222  2                


Q ss_pred             ccCCCCcccceEe-cccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cc
Q 048289          485 IELLPWKNLRYLD-LRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LW  562 (920)
Q Consensus       485 ~~~~~~~~L~~L~-L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~  562 (920)
                           +++|+.|+ ++.|.+.        .|+.+.+++|.++...+      ..|+.|++++|.+++ +|. +...+ |+
T Consensus       408 -----l~~L~~L~~l~~n~~~--------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~  466 (567)
T 1dce_A          408 -----FSTLKAVDPMRAAYLD--------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVT  466 (567)
T ss_dssp             -----HHHHHHHCGGGHHHHH--------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred             -----HHhcccCcchhhcccc--------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCc
Confidence                 23444444 3433322        34445555555553322      236777777777765 454 55555 77


Q ss_pred             eeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccC-chhhcCCCCCCEEEccCc
Q 048289          563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTF-PAWLGALSELQVLILRSN  641 (920)
Q Consensus       563 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N  641 (920)
                      .|++++|.++ .+|..+..+++|+.|+|++|++++ +| .+.++++|++|+|++|++++.. |..++.+++|++|+|++|
T Consensus       467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            7777777777 567777777888888888888875 55 6777788888888888887766 777777888888888888


Q ss_pred             eeecccCCCcc-cCCCCCCcEEEc
Q 048289          642 RFHGPITYSVT-RFPFPKLRILDL  664 (920)
Q Consensus       642 ~l~~~~~~~~~-~~~l~~L~~L~L  664 (920)
                      ++++..+.... ...+|+|+.||+
T Consensus       544 ~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          544 SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCccHHHHHHHHCcccCccCC
Confidence            77766553321 112667777754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=6.4e-17  Score=193.60  Aligned_cols=125  Identities=24%  Similarity=0.261  Sum_probs=61.1

Q ss_pred             EecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccc
Q 048289          518 SVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE  596 (920)
Q Consensus       518 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  596 (920)
                      +++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+.... |+.|+|++|.++ .+|..|..+++|+.|+|++|.|+
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            34444444 44566666777777777777766 3444433333 555555555555 44555555555555555555555


Q ss_pred             cccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeeccc
Q 048289          597 GSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPI  647 (920)
Q Consensus       597 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  647 (920)
                       .+|..|.++++|++|+|++|.|+ .+|..|+.+++|++|+|++|++++.+
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence             44555555555555555555554 44444555555555555555444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=3e-15  Score=149.18  Aligned_cols=152  Identities=21%  Similarity=0.308  Sum_probs=77.4

Q ss_pred             cCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 048289          176 TNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY  255 (920)
Q Consensus       176 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  255 (920)
                      +.+++|++|++++|.+. .+| .+..+++|++|++++| .+. .++.+..+++|++|++++|.+.+..+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44556667777766666 444 4666666666666666 222 1224444555555555555555444455555555555


Q ss_pred             EeCcCCcCCccCcccccCCCCCCEEEccCCc-CcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCcc
Q 048289          256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNK-FTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS  334 (920)
Q Consensus       256 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  334 (920)
                      |++++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++..  .+..+++|++|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence            5555555554444455555555555555554 33 223 3445555555555555544321  34444444444444444


Q ss_pred             c
Q 048289          335 L  335 (920)
Q Consensus       335 l  335 (920)
                      +
T Consensus       193 i  193 (197)
T 4ezg_A          193 I  193 (197)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.8e-15  Score=149.43  Aligned_cols=106  Identities=19%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             CCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEE
Q 048289          201 RLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHL  280 (920)
Q Consensus       201 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  280 (920)
                      .+++|++|++++| .+. .++.+..+++|++|++++|.+..  +..+..+++|++|++++|.+++..+..++.+++|++|
T Consensus        42 ~l~~L~~L~l~~n-~i~-~l~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANI-NVT-DLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESS-CCS-CCTTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCC-Ccc-ChHHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3445555555554 222 22234444444444444443221  1233444444444444444443333334444444444


Q ss_pred             EccCCcCcccchhhhhcCCCCCEEECcCCC
Q 048289          281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQ  310 (920)
Q Consensus       281 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  310 (920)
                      ++++|.+++..+..+..+++|++|++++|.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            444444443333334444444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=6.7e-15  Score=145.84  Aligned_cols=138  Identities=23%  Similarity=0.260  Sum_probs=110.3

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCc-cccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQ-TFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN  617 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (920)
                      +.+++++|.++ .+|..+.. .++.|++++|++++..+. .|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            56777777774 45554332 577888888888776664 4788888999999999998888888888999999999999


Q ss_pred             cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhh
Q 048289          618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQN  680 (920)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  680 (920)
                      ++++..+..|.++++|++|+|++|++++..|..+  ..+++|+.|++++|++.+..+..++..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~  149 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAE  149 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHH
Confidence            9988888888889999999999999988877665  467899999999999998888665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.3e-13  Score=136.44  Aligned_cols=138  Identities=21%  Similarity=0.269  Sum_probs=100.9

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR  618 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (920)
                      +.+++++|.++ .+|..+. ..++.|++++|+++ .+|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            45666776665 3444332 23777777777776 456777788888888888888887777778888888888888888


Q ss_pred             ccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289          619 INGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF  681 (920)
Q Consensus       619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l  681 (920)
                      +++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.+.....++..+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~~  150 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSDW  150 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHHH
Confidence            887777778888888888888888876544333  4577888888888888877765555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.2e-14  Score=157.58  Aligned_cols=102  Identities=15%  Similarity=0.074  Sum_probs=61.2

Q ss_pred             CCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCC-EEEccCCCCCCCchhhhhcCCCCCEE
Q 048289          298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE-SIDLRNNQLTGSISNSISELVNLIDL  376 (920)
Q Consensus       298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L  376 (920)
                      +++|+.+++++|+++.+.+.+|.++++|+++++.+| +...-+.+|..+++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566666666666666555566666666666666665 4433444555666666 666665 4554455566666666666


Q ss_pred             EccCCcCCCcchhhhhhhcCCCceEE
Q 048289          377 SLSSNNLSGNVELYMFAELKNLLGLD  402 (920)
Q Consensus       377 ~L~~n~l~~~~~~~~~~~l~~L~~L~  402 (920)
                      +++.|.++ .++..+|.++++|+.++
T Consensus       303 ~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             EeCCCccC-ccchhhhcCCcchhhhc
Confidence            66666655 45555566666655554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=2.7e-14  Score=138.27  Aligned_cols=129  Identities=22%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCCceEEecCceec-ccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEE
Q 048289          512 PSLNFISVSNNKLS-GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILN  589 (920)
Q Consensus       512 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  589 (920)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+...+ |++|++++|++++.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555555 44555555555555555555555533  2233332 44444444444443444444444444444


Q ss_pred             ccCCcccccc-CccccCCCCCcEEECCCCcccccCc---hhhcCCCCCCEEEccCce
Q 048289          590 LNDNQLEGSV-PLSLVNCSFLEVLDVGNNRINGTFP---AWLGALSELQVLILRSNR  642 (920)
Q Consensus       590 L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~N~  642 (920)
                      +++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            4444444321 1344444444444444444443322   234444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=2.1e-14  Score=155.76  Aligned_cols=217  Identities=12%  Similarity=0.078  Sum_probs=119.9

Q ss_pred             CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCC--CCcCCC--CcCCCCCC
Q 048289          154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKN--LTSVFP--KVNWSSPL  229 (920)
Q Consensus       154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~--~~~~~~--~~~~l~~L  229 (920)
                      |++|++|++.+ .++.....+|.+|++|+.+++++|.+....+..|..+.++..+....+..  ....+.  .+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            55555555555 45545555666666666666666666544455555555555554433100  000111  33444455


Q ss_pred             C-EEEccCCcCcccccccc----cCCCCCCEEeCcCCcCCccCcccc-cCCCCCCEEEccCCcCcccchhhhhcCCCCCE
Q 048289          230 R-FMDLYGCNFMGSIPASL----GNLSQLTYLDLSYNNFSGHIPSTL-SNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF  303 (920)
Q Consensus       230 ~-~L~L~~n~~~~~~~~~l----~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  303 (920)
                      + .+.+....   .++..+    ....+++.+.+.++-.. .....+ ..+++|+.+++++|.++...+..|.++++|+.
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            4 33333221   112111    12344555555543211 111111 23667777777777666555566777777777


Q ss_pred             EECcCCCCCCcccccccCCCcCc-eeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEE
Q 048289          304 LDFSNNQLNGPISSSVSRLHSLV-TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLS  377 (920)
Q Consensus       304 L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  377 (920)
                      +++.+| +..+.+.+|.++++|+ .+++.+ .++..-+.+|..+++|+.++++.|.++...+.+|.++++|+.++
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            777766 6556666677777777 777766 55544456666777777777777777766666777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=2.5e-14  Score=135.49  Aligned_cols=126  Identities=19%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             CCCceEEecCceec-ccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEE
Q 048289          512 PSLNFISVSNNKLS-GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILN  589 (920)
Q Consensus       512 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  589 (920)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+...+ |++|++++|.+++.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666666 56666667777777777777777654  3344333 66666666666555555555556666666


Q ss_pred             ccCCccccc-cCccccCCCCCcEEECCCCcccccCc---hhhcCCCCCCEEEcc
Q 048289          590 LNDNQLEGS-VPLSLVNCSFLEVLDVGNNRINGTFP---AWLGALSELQVLILR  639 (920)
Q Consensus       590 L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~  639 (920)
                      +++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666542 23455566666666666666654444   345555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=134.97  Aligned_cols=127  Identities=22%  Similarity=0.250  Sum_probs=75.5

Q ss_pred             eEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCccccc
Q 048289          495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS  574 (920)
Q Consensus       495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~  574 (920)
                      .+++++|.++..+...++++++|++++|.++ .+|..|.++++|+.|++++|++                       ++.
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i-----------------------~~i   69 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-----------------------STL   69 (193)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCC-----------------------CCC
T ss_pred             EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcC-----------------------CEe
Confidence            4444444444333333445555555555554 3444555555555555555554                       444


Q ss_pred             CCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeec
Q 048289          575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG  645 (920)
Q Consensus       575 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  645 (920)
                      .+..|.++++|+.|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.+
T Consensus        70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            45556666677777777777766666667777777777777777775555566677777777777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=2.1e-13  Score=133.18  Aligned_cols=130  Identities=22%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG  573 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~  573 (920)
                      +.++++++++.......++++++|++++|++++..+..|..+++|++|++++|++++                       
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------   66 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-----------------------   66 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-----------------------
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-----------------------
Confidence            344444444444333334455555555555554444455555555555555555553                       


Q ss_pred             cCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecc
Q 048289          574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP  646 (920)
Q Consensus       574 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  646 (920)
                      ..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus        67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            3344455566666666666666655555556666666666666666654444456666666666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=1.3e-13  Score=133.39  Aligned_cols=132  Identities=23%  Similarity=0.305  Sum_probs=77.2

Q ss_pred             CCCCEEEccCCcCc-ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEE
Q 048289          227 SPLRFMDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD  305 (920)
Q Consensus       227 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  305 (920)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555555 45555566666666666666666643  4566666666666666666655566666666666666


Q ss_pred             CcCCCCCCcc-cccccCCCcCceeeccCccccccCC---ccccCCCCCCEEEccCCCCC
Q 048289          306 FSNNQLNGPI-SSSVSRLHSLVTIYLSYNSLNGTIP---SGLFTSPLLESIDLRNNQLT  360 (920)
Q Consensus       306 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~  360 (920)
                      +++|.+++.. +..+..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666665432 2455556666666666666553322   24455555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=3.7e-13  Score=131.44  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=112.4

Q ss_pred             cCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289          538 IFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN  617 (920)
Q Consensus       538 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (920)
                      .+.+++++|.++. +|..+. ..++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~-~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCcc-CCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4677778887764 443332 24889999999998877788899999999999999999877788899999999999999


Q ss_pred             cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCc
Q 048289          618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLP  674 (920)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  674 (920)
                      ++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|++.+..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            9998888889999999999999999986544333  458899999999999999877

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=1.4e-13  Score=130.32  Aligned_cols=127  Identities=18%  Similarity=0.275  Sum_probs=77.6

Q ss_pred             CCCCEEEccCCcCc-ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEE
Q 048289          227 SPLRFMDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD  305 (920)
Q Consensus       227 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  305 (920)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 55666666677777777777776654  5566677777777777777665666666677777777


Q ss_pred             CcCCCCCCc-ccccccCCCcCceeeccCccccccCC---ccccCCCCCCEEEcc
Q 048289          306 FSNNQLNGP-ISSSVSRLHSLVTIYLSYNSLNGTIP---SGLFTSPLLESIDLR  355 (920)
Q Consensus       306 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~  355 (920)
                      +++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777766653 23555556666666666665553322   234444555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=6.9e-12  Score=138.73  Aligned_cols=214  Identities=11%  Similarity=0.143  Sum_probs=100.7

Q ss_pred             CCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCC-CCcCCCCCCCEEEcc
Q 048289          157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVF-PKVNWSSPLRFMDLY  235 (920)
Q Consensus       157 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~  235 (920)
                      |+.+.+.. .+......+|.+|++|+.++++.|.++. ++.....+.+|+.+.+..+  +...- ..|..+++|+.+++.
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence            44444443 3333444556666666666666655552 3322222456666665533  22111 145555555555554


Q ss_pred             CCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCc-----ccchhhhhcCCCCCEEECcCCC
Q 048289          236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT-----GQIPCIFANLTQLSFLDFSNNQ  310 (920)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~  310 (920)
                      .+ +...-..+|.+ .+|+.+.+. +.++.....+|.++++|+.+++.++.+.     ...+..|.+|++|+.+.+. +.
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~  310 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES  310 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred             CC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence            42 23222334444 455555552 2344344455555555555555554443     2333455555555555555 23


Q ss_pred             CCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCC-CCCEEEccC
Q 048289          311 LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELV-NLIDLSLSS  380 (920)
Q Consensus       311 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~  380 (920)
                      +..+...+|.++++|+.+.+..+ ++..-..+|..+ +|+.+++.+|.+.......|..++ +++.|.+..
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            44444455555555555555333 332223344444 555555555544433333444442 344444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=4.8e-15  Score=147.86  Aligned_cols=82  Identities=24%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcC-cccccccCCccccCCCCcccccCccc----------c
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP-YSLENLTQLESLDLSSNKVAGEIPWQ----------L  792 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------l  792 (920)
                      +.|+.|++++|.+++ +| .++.+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|..          +
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            456778888888875 45 57778888888888888876433 46777888888888888887776653          6


Q ss_pred             cCCCCCCeeeccCCccc
Q 048289          793 TSLNFLQVLNLSQNQLV  809 (920)
Q Consensus       793 ~~l~~L~~L~ls~N~l~  809 (920)
                      ..+++|++||  +|.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            7788888876  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=4.2e-13  Score=129.84  Aligned_cols=90  Identities=24%  Similarity=0.253  Sum_probs=84.7

Q ss_pred             ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL  803 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  803 (920)
                      +.++.|+|++|.+++..|..|+.+++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            45789999999999999999999999999999999999998888999999999999999999988888999999999999


Q ss_pred             cCCcccCCCC
Q 048289          804 SQNQLVGPIP  813 (920)
Q Consensus       804 s~N~l~g~iP  813 (920)
                      ++|++.+..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999987655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.39  E-value=1e-11  Score=138.07  Aligned_cols=327  Identities=13%  Similarity=0.130  Sum_probs=149.8

Q ss_pred             ccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCc
Q 048289          245 ASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHS  324 (920)
Q Consensus       245 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  324 (920)
                      .+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++..-...|.++.+|+.+.+..+ +......+|.++..
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            34555555555555432 44333445555555665555433 33233344555555555544432 22233344444433


Q ss_pred             CceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcC
Q 048289          325 LVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLS  404 (920)
Q Consensus       325 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls  404 (920)
                      ++.........  ....++..+++|+.+.+.++. ......+|..+.+|+.+.+..+ ++ .+...+|.++..|+.+.+.
T Consensus       142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             SEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCC
T ss_pred             cccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecC
Confidence            22222211111  122345555666666665432 2233445666666666666554 22 4455566666666666655


Q ss_pred             CCccccCccCCCCCCCCcCceEeeeccCCcCCc-hhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCc
Q 048289          405 HNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLT  483 (920)
Q Consensus       405 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~  483 (920)
                      .+.....   ........|+.+.+... ++.+. ..+..+..++.+.+..+...                        +.
T Consensus       217 ~~~~~i~---~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~------------------------i~  268 (394)
T 4fs7_A          217 NSLYYLG---DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR------------------------IG  268 (394)
T ss_dssp             TTCCEEC---TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE------------------------EC
T ss_pred             CCceEee---hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce------------------------ee
Confidence            5432211   11122234444444322 11111 22333333333333322111                        00


Q ss_pred             CccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cc
Q 048289          484 GIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LW  562 (920)
Q Consensus       484 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~  562 (920)
                      ...+..+..++.+......+.                        ...|..+.+|+.+.+.++ ++..-..+|..+. |+
T Consensus       269 ~~~F~~~~~l~~~~~~~~~i~------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~  323 (394)
T 4fs7_A          269 GSLFYNCSGLKKVIYGSVIVP------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV  323 (394)
T ss_dssp             SCTTTTCTTCCEEEECSSEEC------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccccccceeccCceeec------------------------cccccccccccccccccc-cceechhhhcCCCCCC
Confidence            111112222332222222111                        223444445555544432 3222233344443 55


Q ss_pred             eeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEE
Q 048289          563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVL  636 (920)
Q Consensus       563 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  636 (920)
                      .+++.++ ++.+...+|.+|++|+.+++..+ ++.+...+|.+|++|+.+++..+ ++ .+...|.++++|+.+
T Consensus       324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            5555432 44445567777777777777665 55556667777777777777654 22 234456677766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.38  E-value=2.5e-11  Score=134.33  Aligned_cols=178  Identities=11%  Similarity=0.125  Sum_probs=83.2

Q ss_pred             CcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCC
Q 048289          222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL  301 (920)
Q Consensus       222 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  301 (920)
                      .|..+++|+.+++..|.+......+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++..-..+|.+ .+|
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence            344444444444444444433333333 345555555432 43344445555555555555543 33233344444 455


Q ss_pred             CEEECcCCCCCCcccccccCCCcCceeeccCcccc-----ccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEE
Q 048289          302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN-----GTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDL  376 (920)
Q Consensus       302 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  376 (920)
                      +.+.+. +.+..+...+|.++++|+.+++.++.+.     ..-+..|..+++|+.+.+.+ .++.....+|.+|.+|+.+
T Consensus       251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred             cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence            555552 3344344455555555555555554432     12233444555555555552 2443444455555555555


Q ss_pred             EccCCcCCCcchhhhhhhcCCCceEEcCCCcc
Q 048289          377 SLSSNNLSGNVELYMFAELKNLLGLDLSHNSL  408 (920)
Q Consensus       377 ~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  408 (920)
                      .+..+ ++ .+...+|.++ +|+.+++.+|..
T Consensus       329 ~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          329 TIPAN-VT-QINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             EECTT-CC-EECTTSSSSS-CCCEEEECCSSC
T ss_pred             EECcc-cc-EEcHHhCCCC-CCCEEEEcCCCC
Confidence            55433 22 3444455555 555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=1.6e-14  Score=144.09  Aligned_cols=133  Identities=22%  Similarity=0.224  Sum_probs=90.6

Q ss_pred             cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289          602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF  681 (920)
Q Consensus       602 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l  681 (920)
                      .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|...  ..+++|+.|++++|++++ +| . +.. 
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~~~L~~L~L~~N~l~~-l~-~-~~~-  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AVADTLEELWISYNQIAS-LS-G-IEK-  113 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HHHHHCSEEEEEEEECCC-HH-H-HHH-
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hcCCcCCEEECcCCcCCc-CC-c-ccc-
Confidence            55566666666666666664 44 5566666666666666665 233221  224567777777777765 33 1 222 


Q ss_pred             hccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch-hhhhccCCCceEeccCccc
Q 048289          682 QAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP-EVVGKLNSLKGLNFSHNKL  760 (920)
Q Consensus       682 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l  760 (920)
                                                               ++.|+.|++++|.+++..+ ..+..+++|+.|++++|++
T Consensus       114 -----------------------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          114 -----------------------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             -----------------------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             -----------------------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence                                                     3567889999999986433 5788999999999999999


Q ss_pred             cCCcCcc----------cccccCCccccCCCCcccc
Q 048289          761 TGLIPYS----------LENLTQLESLDLSSNKVAG  786 (920)
Q Consensus       761 ~~~ip~~----------~~~l~~L~~L~Ls~N~l~g  786 (920)
                      ++.+|..          +..+++|+.||  +|.++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            8887764          88899999987  666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=1.3e-12  Score=126.73  Aligned_cols=89  Identities=27%  Similarity=0.265  Sum_probs=82.7

Q ss_pred             ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL  803 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  803 (920)
                      +.++.|+|++|.+++..|..|+.+++|+.|+|++|+|++..+..|..+++|++|||++|+|++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            45789999999999999999999999999999999999988888899999999999999999887778999999999999


Q ss_pred             cCCcccCCC
Q 048289          804 SQNQLVGPI  812 (920)
Q Consensus       804 s~N~l~g~i  812 (920)
                      ++|++....
T Consensus       113 ~~N~~~c~~  121 (174)
T 2r9u_A          113 YNNPWDCEC  121 (174)
T ss_dssp             CSSCBCTTB
T ss_pred             CCCCccccc
Confidence            999998653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=1.1e-12  Score=127.92  Aligned_cols=136  Identities=18%  Similarity=0.135  Sum_probs=101.8

Q ss_pred             cccCCCCcCeEeCCCCcCCCcCccccccc-ccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCC
Q 048289          531 SFCNMSSIFYVNLSNNSLNGMIPPCLANS-SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFL  609 (920)
Q Consensus       531 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  609 (920)
                      .+.++++|+.|++++|.++. +|...... .|+.|++++|.+++.  ..+..+++|+.|++++|++++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            45667788888888888874 35444444 488888888888865  577888889999999999886655666888899


Q ss_pred             cEEECCCCcccccCch--hhcCCCCCCEEEccCceeecccCCC--cccCCCCCCcEEEccCCcCcC
Q 048289          610 EVLDVGNNRINGTFPA--WLGALSELQVLILRSNRFHGPITYS--VTRFPFPKLRILDLSNNEFTG  671 (920)
Q Consensus       610 ~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~  671 (920)
                      ++|++++|+++ .+|.  .+..+++|++|++++|++... |..  .....+++|+.||+++|....
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999886 4554  788888999999999988743 331  012457889999999887653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.35  E-value=4e-11  Score=133.35  Aligned_cols=288  Identities=11%  Similarity=0.064  Sum_probs=128.2

Q ss_pred             CccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHh
Q 048289           73 SLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQ  152 (920)
Q Consensus        73 ~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~  152 (920)
                      +|.++++|+.+.+..+ ++.. -..+|.+|++|+.+++..+ ++..-..++.++++|+.+.+..+ +..++..+    +.
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a----F~  137 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA----FK  137 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT----TT
T ss_pred             HhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee----ee
Confidence            6777888888888643 3321 1345777888888888654 44334456677777777666554 33222222    22


Q ss_pred             cCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289          153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM  232 (920)
Q Consensus       153 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  232 (920)
                      ++..++......  .......+|.++++|+.+.+.++. .......|..+.+|+.+.+..+                   
T Consensus       138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-------------------  195 (394)
T 4fs7_A          138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-------------------  195 (394)
T ss_dssp             TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-------------------
T ss_pred             cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-------------------
Confidence            232222111111  111223345555555555554332 1122334444555555544433                   


Q ss_pred             EccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289          233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN  312 (920)
Q Consensus       233 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (920)
                            +......++.++..|+.+.+..+...  +.........|+.+.+... ++......|..+..|+.+.+..+.. 
T Consensus       196 ------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-  265 (394)
T 4fs7_A          196 ------LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-  265 (394)
T ss_dssp             ------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-
T ss_pred             ------ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-
Confidence                  12122233444444444444332211  1111222334444444322 1112223344445555555444322 


Q ss_pred             CcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhh
Q 048289          313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF  392 (920)
Q Consensus       313 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  392 (920)
                      ......|..+..++.+......+.   ...+..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++ .+...+|
T Consensus       266 ~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF  339 (394)
T 4fs7_A          266 RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSF  339 (394)
T ss_dssp             EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTT
T ss_pred             eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhc
Confidence            133334444444544444333221   123334455555555433 33233344555555555555432 22 3444555


Q ss_pred             hhcCCCceEEcCCC
Q 048289          393 AELKNLLGLDLSHN  406 (920)
Q Consensus       393 ~~l~~L~~L~Ls~n  406 (920)
                      .+|.+|+.+.+..+
T Consensus       340 ~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          340 RGCTSLSNINFPLS  353 (394)
T ss_dssp             TTCTTCCEECCCTT
T ss_pred             cCCCCCCEEEECcc
Confidence            55555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.5e-12  Score=126.90  Aligned_cols=130  Identities=14%  Similarity=0.054  Sum_probs=97.0

Q ss_pred             CCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEE
Q 048289          511 PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILN  589 (920)
Q Consensus       511 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  589 (920)
                      +++|++|++++|.++.. |......++|++|++++|.+++.  ..+...+ |+.|++++|.+++..+..|..+++|+.|+
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            34566666777766633 43222334788888888888764  4455555 88888888888876666668889999999


Q ss_pred             ccCCccccccCc--cccCCCCCcEEECCCCcccccCchh----hcCCCCCCEEEccCceeec
Q 048289          590 LNDNQLEGSVPL--SLVNCSFLEVLDVGNNRINGTFPAW----LGALSELQVLILRSNRFHG  645 (920)
Q Consensus       590 L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~  645 (920)
                      +++|+++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|++|++++|....
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999996 4555  7888999999999999998 45553    8889999999999997653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=1e-11  Score=119.97  Aligned_cols=90  Identities=22%  Similarity=0.203  Sum_probs=44.6

Q ss_pred             CcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEE
Q 048289          583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRIL  662 (920)
Q Consensus       583 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  662 (920)
                      ++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+  ..+++|+.|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L  107 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF--DNLKSLTHI  107 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh--cCCCCCCEE
Confidence            344444455554444444444445555555555555554444444455555555555555544333222  234556666


Q ss_pred             EccCCcCcCCCc
Q 048289          663 DLSNNEFTGVLP  674 (920)
Q Consensus       663 ~Ls~N~l~~~~p  674 (920)
                      +|++|++++..+
T Consensus       108 ~L~~N~~~c~c~  119 (170)
T 3g39_A          108 WLLNNPWDCACS  119 (170)
T ss_dssp             ECCSSCBCTTBG
T ss_pred             EeCCCCCCCCch
Confidence            666666665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=2.4e-11  Score=117.77  Aligned_cols=102  Identities=22%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCc
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNR  618 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (920)
                      +.+++++|.++ .+|..+. ..|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            45555555553 3333322 225555555555554445555555555555555555554433444455555555555555


Q ss_pred             ccccCchhhcCCCCCCEEEccCce
Q 048289          619 INGTFPAWLGALSELQVLILRSNR  642 (920)
Q Consensus       619 l~~~~p~~l~~l~~L~~L~L~~N~  642 (920)
                      +++..+..|..+++|++|+|++|+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             cceeCHHHhccccCCCEEEeCCCC
Confidence            553333334444444444444433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=5.7e-13  Score=146.02  Aligned_cols=69  Identities=19%  Similarity=0.178  Sum_probs=35.9

Q ss_pred             ccccEEEcCCCcCCCC----chhhhhccCCCceEeccCccccCC----cCcccccccCCccccCCCCcccccCcccc
Q 048289          724 NIFTTIDLSGNKFQGR----IPEVVGKLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAGEIPWQL  792 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l  792 (920)
                      +.|++|||++|.++..    ++..+...+.|+.|+|++|.|++.    ++..+...++|++|||++|.|+..-...+
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            3455666666665532    244445555666666666666542    22333344566666666666554433333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1.7e-12  Score=142.17  Aligned_cols=87  Identities=23%  Similarity=0.259  Sum_probs=71.9

Q ss_pred             ccccEEEcCCCcCCC----CchhhhhccCCCceEeccCccccCC----cCcccccccCCccccCCCCccccc----Cccc
Q 048289          724 NIFTTIDLSGNKFQG----RIPEVVGKLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAGE----IPWQ  791 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~  791 (920)
                      +.|++|+|++|.++.    .++..+...++|++|+|++|.|++.    ++..+...++|++|||++|.|+..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            568999999999875    3556668899999999999999864    366778889999999999999863    4455


Q ss_pred             ccCCCCCCeeeccCCcccC
Q 048289          792 LTSLNFLQVLNLSQNQLVG  810 (920)
Q Consensus       792 l~~l~~L~~L~ls~N~l~g  810 (920)
                      +...+.|++||+++|+++.
T Consensus       235 L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCH
T ss_pred             HHhCCCCCEEeccCCCCCH
Confidence            6677999999999999864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.12  E-value=4.9e-09  Score=116.41  Aligned_cols=331  Identities=11%  Similarity=0.118  Sum_probs=165.5

Q ss_pred             CcccccCCC-CCCEEEccCCcCcccchhhhhcCCCCCEEECcCCC---CCCcccccccCCCcCceeeccCccccccCCcc
Q 048289          267 IPSTLSNLQ-QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQ---LNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG  342 (920)
Q Consensus       267 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  342 (920)
                      -..+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..+.   ++.+...+|..+.+|+.+.+..+ ++......
T Consensus        55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            345566663 5777777654 554556677777888887776653   44445566667777776665543 22122344


Q ss_pred             ccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCc
Q 048289          343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPY  422 (920)
Q Consensus       343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  422 (920)
                      +..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++ .+...+|.. .+|+.+.+..+.               
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~---------------  193 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKV---------------  193 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTC---------------
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCcc---------------
Confidence            455566666666433 22233344555555555555433 11 223333322 233333333221               


Q ss_pred             CceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCc
Q 048289          423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS  502 (920)
Q Consensus       423 L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~  502 (920)
                                ..--..++..+..++........... +...+.. ....                   .........   
T Consensus       194 ----------~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~-~~~~-------------------~~~~~~~~~---  239 (394)
T 4gt6_A          194 ----------TRIGTNAFSECFALSTITSDSESYPA-IDNVLYE-KSAN-------------------GDYALIRYP---  239 (394)
T ss_dssp             ----------CEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEE-ECTT-------------------SCEEEEECC---
T ss_pred             ----------cccccchhhhccccceeccccccccc-ccceeec-cccc-------------------ccccccccc---
Confidence                      11111233333334333332222110 0000000 0000                   000000000   


Q ss_pred             CCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccC
Q 048289          503 LKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSK  581 (920)
Q Consensus       503 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~  581 (920)
                             ....+..+.+. +.++.....+|.++..|+.+.+.++... .-...+..+. |+.+.+. +.++.+...+|.+
T Consensus       240 -------~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~  309 (394)
T 4gt6_A          240 -------SQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG  309 (394)
T ss_dssp             -------TTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT
T ss_pred             -------cccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecC
Confidence                   00112222221 1223334556777777777777654332 3344555555 7777775 4555566678888


Q ss_pred             CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289          582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI  661 (920)
Q Consensus       582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  661 (920)
                      |.+|+.++|..+ ++.+...+|.+|++|+.+.+..+ ++......|.++++|+.+++.++.....     .+.....|+.
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~~L~~  382 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDSGLQN  382 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCCCC--
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccCCCCE
Confidence            888888888754 65566678888888888888654 6655667788888888888888754321     1234567777


Q ss_pred             EEccCCcC
Q 048289          662 LDLSNNEF  669 (920)
Q Consensus       662 L~Ls~N~l  669 (920)
                      +.+..|.+
T Consensus       383 i~i~~~~~  390 (394)
T 4gt6_A          383 LPVAPGSI  390 (394)
T ss_dssp             --------
T ss_pred             EEeCCCCE
Confidence            77766544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1e-08  Score=113.77  Aligned_cols=327  Identities=12%  Similarity=0.090  Sum_probs=144.8

Q ss_pred             CccCCC-CCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCC---CcccCCccccCCCCCCEEEcCCCCCCCCCCchHH
Q 048289           73 SLFSLP-HLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSS---FSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLK  148 (920)
Q Consensus        73 ~l~~l~-~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~---~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~  148 (920)
                      +|.+++ .|+.+.+..+ ++.. -..+|.+|++|+.+.++.+.   ++..-..+|..+.+|+.+.+..+ +..++..   
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~---  131 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE---  131 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT---
T ss_pred             hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh---
Confidence            565653 4777777643 2221 23457777777777776542   43333445666666766665544 3322222   


Q ss_pred             HHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCC
Q 048289          149 ALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP  228 (920)
Q Consensus       149 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  228 (920)
                       .+..+.+|+.+.+... +.......|..+..|+.+.+..+ +. .+.........|+.+.+..+ ........+..+..
T Consensus       132 -aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~  206 (394)
T 4gt6_A          132 -AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFA  206 (394)
T ss_dssp             -TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred             -hhhhhcccccccccce-eeeecccceecccccccccccce-ee-EeccccccccceeEEEECCc-ccccccchhhhccc
Confidence             2344555555555432 22233344555555555555443 22 11111112344555555433 11111123444444


Q ss_pred             CCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcC
Q 048289          229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN  308 (920)
Q Consensus       229 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  308 (920)
                      +.................+........           ....+.....+..+.+.. .+...-..+|..+..|+.+.+..
T Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~  274 (394)
T 4gt6_A          207 LSTITSDSESYPAIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD  274 (394)
T ss_dssp             CCEEEECCSSSCBSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT
T ss_pred             cceecccccccccccceeecccccccc-----------cccccccccccceEEcCC-cceEcccceeeecccccEEeccc
Confidence            444433322211100000000000000           000011112233333321 12222334555666666666654


Q ss_pred             CCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcch
Q 048289          309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVE  388 (920)
Q Consensus       309 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  388 (920)
                      +.. .+...+|.++++|+.+.+.. .+...-...|..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++ .+.
T Consensus       275 ~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~  349 (394)
T 4gt6_A          275 SVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIP  349 (394)
T ss_dssp             TCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCC
T ss_pred             ccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEh
Confidence            332 23445556666666666642 233223344555666666666543 44344456666777777766543 33 455


Q ss_pred             hhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeecc
Q 048289          389 LYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC  431 (920)
Q Consensus       389 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~  431 (920)
                      ..+|.+|.+|+.+++.++....    .....+..|+.+.+..+
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC--------
T ss_pred             HhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCC
Confidence            6667777777777776654332    12234455665555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=8.7e-10  Score=120.30  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=73.3

Q ss_pred             eecCCC-cccccCCccccCCCcccEEEccC-CccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCc
Q 048289          564 LDMRMN-NFHGSIPQTFSKGSRLTILNLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN  641 (920)
Q Consensus       564 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  641 (920)
                      ++++++ +++. +|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 5553 444 66666777777774 7777666666777777777777777777766667777777777777777


Q ss_pred             eeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289          642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF  681 (920)
Q Consensus       642 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l  681 (920)
                      ++++..+..+.  .+ .|+.|+|++|++.+.....++..+
T Consensus        91 ~l~~~~~~~~~--~~-~L~~l~l~~N~~~c~c~l~~~~~~  127 (347)
T 2ifg_A           91 ALESLSWKTVQ--GL-SLQELVLSGNPLHCSCALRWLQRW  127 (347)
T ss_dssp             CCSCCCSTTTC--SC-CCCEEECCSSCCCCCGGGHHHHHH
T ss_pred             ccceeCHHHcc--cC-CceEEEeeCCCccCCCccHHHHHH
Confidence            77654333321  22 377888888888776665555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=3.6e-10  Score=123.33  Aligned_cols=87  Identities=23%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             cccccEEEcCC-CcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCee
Q 048289          723 LNIFTTIDLSG-NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVL  801 (920)
Q Consensus       723 ~~~l~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  801 (920)
                      +..|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++.+|..|++|++|++|||++|+|++..|..|..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34577777775 777776667777777777777777777777777777777777777777777766666666655 7777


Q ss_pred             eccCCcccC
Q 048289          802 NLSQNQLVG  810 (920)
Q Consensus       802 ~ls~N~l~g  810 (920)
                      ++++|++..
T Consensus       109 ~l~~N~~~c  117 (347)
T 2ifg_A          109 VLSGNPLHC  117 (347)
T ss_dssp             ECCSSCCCC
T ss_pred             EeeCCCccC
Confidence            777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=9.1e-09  Score=111.50  Aligned_cols=62  Identities=27%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             HHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccC--CCCCCCEEEcc
Q 048289          147 LKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF--RLPNLQNLILS  211 (920)
Q Consensus       147 l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~  211 (920)
                      +...+..+++|+.|.++++.-. .++. +. +++|++|++..|.+.......+.  .+++|++|+|+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            4455566666666666655211 1122 22 56677777766655432222222  56666666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.72  E-value=7.8e-07  Score=98.02  Aligned_cols=300  Identities=13%  Similarity=0.091  Sum_probs=148.7

Q ss_pred             ccCCCCCCEEECCCCCCCCCCC-CCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHh
Q 048289           74 LFSLPHLQILNLAFNDFNYSYI-SPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQ  152 (920)
Q Consensus        74 l~~l~~L~~L~Ls~~~~~~~~i-~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~  152 (920)
                      +....+|+.+.+... ++.  | ..+|.+|.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +..++..++    .
T Consensus        42 ~~~~~~i~~v~ip~~-vt~--Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF----~  111 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITS--IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVF----Q  111 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEE--ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTT----T
T ss_pred             cccccCCEEEEeCCC-ccC--hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecccee----c
Confidence            344556777776543 221  2 235777777777777543 443334455555 5666665544 333333222    1


Q ss_pred             cCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEE
Q 048289          153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFM  232 (920)
Q Consensus       153 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  232 (920)
                      . .+|+.+.+..+ +.......|.++ +|+.+.+..+ ++..-...+..+..++.+.+..+. .........        
T Consensus       112 ~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~-~~~~~~~~~--------  178 (379)
T 4h09_A          112 G-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNN-KNYVAENYV--------  178 (379)
T ss_dssp             T-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTC-SSEEEETTE--------
T ss_pred             c-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccccccccccccc-ceeecccce--------
Confidence            2 24555555432 111122222222 2333333221 111222333344444444433321 000000000        


Q ss_pred             EccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289          233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN  312 (920)
Q Consensus       233 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (920)
                      .   ..........+..+..+..+.+..... ......+..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++
T Consensus       179 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~  252 (379)
T 4h09_A          179 L---YNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT  252 (379)
T ss_dssp             E---EETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC
T ss_pred             e---cccccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc
Confidence            0   000011222344455555555544322 233445556667777776544 33344455667777777777654 44


Q ss_pred             CcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhh
Q 048289          313 GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF  392 (920)
Q Consensus       313 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  392 (920)
                      .+...+|.++.+|+.+.+..+ +...-...+..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++ .+...+|
T Consensus       253 ~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF  329 (379)
T 4h09_A          253 SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAF  329 (379)
T ss_dssp             EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT
T ss_pred             EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHh
Confidence            455566777777777776543 33233345566777777777776666555667777777777777543 33 5566677


Q ss_pred             hhcCCCceEEcCC
Q 048289          393 AELKNLLGLDLSH  405 (920)
Q Consensus       393 ~~l~~L~~L~Ls~  405 (920)
                      .+|.+|+.+.+..
T Consensus       330 ~~C~~L~~i~ip~  342 (379)
T 4h09_A          330 KNCKALSTISYPK  342 (379)
T ss_dssp             TTCTTCCCCCCCT
T ss_pred             hCCCCCCEEEECC
Confidence            7777777666644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=4.7e-09  Score=113.77  Aligned_cols=63  Identities=14%  Similarity=0.188  Sum_probs=29.5

Q ss_pred             ccccEEEcCCCcCCCCchhhhh---ccCCCceEeccCccccCC----cCcccccccCCccccCCCCcccc
Q 048289          724 NIFTTIDLSGNKFQGRIPEVVG---KLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAG  786 (920)
Q Consensus       724 ~~l~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g  786 (920)
                      +.|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++.
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            3445555555554433332222   244555555555555442    23333445555555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.68  E-value=7.7e-07  Score=98.09  Aligned_cols=63  Identities=14%  Similarity=0.156  Sum_probs=31.5

Q ss_pred             ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289          577 QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS  640 (920)
Q Consensus       577 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  640 (920)
                      .+|.++++|+.+.+.++.++.+...+|.+|++|+.+.|..+ ++......|.++++|+.+.+..
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            44555555555555555554444455555555555555433 3333344455555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.1e-07  Score=97.53  Aligned_cols=84  Identities=25%  Similarity=0.324  Sum_probs=62.4

Q ss_pred             EEcCCCcC---CCCchhhhhccCCCceEeccCccccC--CcCcccccccCCccccCCCCcccccCcccccCCC--CCCee
Q 048289          729 IDLSGNKF---QGRIPEVVGKLNSLKGLNFSHNKLTG--LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLN--FLQVL  801 (920)
Q Consensus       729 L~Ls~N~l---~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L  801 (920)
                      ++++.|..   .+.++....+++.|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            67777743   22333333668889999999999988  5567788889999999999998875  2344444  88999


Q ss_pred             eccCCcccCCCCC
Q 048289          802 NLSQNQLVGPIPQ  814 (920)
Q Consensus       802 ~ls~N~l~g~iP~  814 (920)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999887773

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=6.7e-08  Score=94.33  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=40.0

Q ss_pred             cCCCCCCEEECCCC-CCCCC---CCCCcCCCCCCCCEEeCCCCCCccc----CCccccCCCCCCEEEcCCCCCCCCCCch
Q 048289           75 FSLPHLQILNLAFN-DFNYS---YISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLSGNSQLGLDTPV  146 (920)
Q Consensus        75 ~~l~~L~~L~Ls~~-~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  146 (920)
                      ...+.|++|+|++| .+...   .+...+...++|++|+|++|.+.+.    +...+...+.|++|+|++|.+...+...
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            34455555555555 44321   0122233444555555555554421    2222333344555555555443322223


Q ss_pred             HHHHHhcCCCCCEEEc--CCCCCC
Q 048289          147 LKALVQNLNELQELVL--NSVDMS  168 (920)
Q Consensus       147 l~~~~~~l~~L~~L~L--~~~~~~  168 (920)
                      +...+...+.|++|++  ++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhCCCceEEEecCCCCCCC
Confidence            3334444444444444  444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=1.7e-07  Score=91.39  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=81.9

Q ss_pred             CcCCCCCCCCEEeCCCC-CCccc----CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCc
Q 048289           97 PGFTRFPNLAHLNLSVS-SFSGQ----IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV  171 (920)
Q Consensus        97 ~~~~~l~~L~~L~Ls~n-~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~  171 (920)
                      ..+...+.|++|+|++| .+.+.    +...+...++|++|+|++|.+...+...+...+...++|++|+|++|.+....
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34677889999999998 87642    44556777889999999997765445556677777888888888888887653


Q ss_pred             ----chhccCCCCCCEEEc--cCCcCCCC----CCcccCCCCCCCEEEccCC
Q 048289          172 ----PSFLTNLSSLTSLDL--GNCGLQGS----IPENIFRLPNLQNLILSYN  213 (920)
Q Consensus       172 ----~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n  213 (920)
                          ...+...++|++|++  ++|.+...    +...+...+.|++|++++|
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence                455666677888888  66776643    2233344566666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=4.3e-07  Score=93.03  Aligned_cols=79  Identities=25%  Similarity=0.296  Sum_probs=68.4

Q ss_pred             hcccccEEEcCCCcCCC--CchhhhhccCCCceEeccCccccCCcCccccccc--CCccccCCCCcccccCcc-------
Q 048289          722 VLNIFTTIDLSGNKFQG--RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT--QLESLDLSSNKVAGEIPW-------  790 (920)
Q Consensus       722 ~~~~l~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~L~Ls~N~l~g~ip~-------  790 (920)
                      .++.|+.|+||+|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.+++.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            36789999999999998  5678889999999999999999986  4566666  999999999999988773       


Q ss_pred             cccCCCCCCeee
Q 048289          791 QLTSLNFLQVLN  802 (920)
Q Consensus       791 ~l~~l~~L~~L~  802 (920)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467888999887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=4.6e-06  Score=78.91  Aligned_cols=86  Identities=14%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc---CCCCCEEEcCCCC-CCCCcchhccCC
Q 048289          103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN---LNELQELVLNSVD-MSYEVPSFLTNL  178 (920)
Q Consensus       103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~---l~~L~~L~L~~~~-~~~~~~~~l~~l  178 (920)
                      ..|++||++++.+++.--..+.++++|++|+|++|..  +.+.++...-..   +++|++|++++|. +++..-..+.++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~--ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY--IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT--CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc--cCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            4566666666666655445566677777777777632  222333332221   2356666666653 555444555556


Q ss_pred             CCCCEEEccCCc
Q 048289          179 SSLTSLDLGNCG  190 (920)
Q Consensus       179 ~~L~~L~Ls~n~  190 (920)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            666666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.57  E-value=3.7e-05  Score=72.70  Aligned_cols=13  Identities=15%  Similarity=-0.059  Sum_probs=5.7

Q ss_pred             CCCCCCEEEccCC
Q 048289          345 TSPLLESIDLRNN  357 (920)
Q Consensus       345 ~l~~L~~L~L~~n  357 (920)
                      .+++|++|++++|
T Consensus       137 ~~~~L~~L~L~~c  149 (176)
T 3e4g_A          137 HFRNLKYLFLSDL  149 (176)
T ss_dssp             GCTTCCEEEEESC
T ss_pred             cCCCCCEEECCCC
Confidence            3444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.00  E-value=0.00014  Score=70.06  Aligned_cols=66  Identities=14%  Similarity=0.106  Sum_probs=30.1

Q ss_pred             ccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcc----hhccCCCCCCEEEccC
Q 048289          123 ISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVP----SFLTNLSSLTSLDLGN  188 (920)
Q Consensus       123 l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~Ls~  188 (920)
                      +..-+.|+.|+|++|.+.+.....+...+..-+.|++|+|++|.|.....    ..+..-+.|++|+|++
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            33344455555555544433334444444444555555555555543322    2233334455555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.00032  Score=67.68  Aligned_cols=116  Identities=10%  Similarity=0.011  Sum_probs=75.4

Q ss_pred             cCCCCCCEEECCCC-CCCCC---CCCCcCCCCCCCCEEeCCCCCCcccC----CccccCCCCCCEEEcCCCCCCCCCCch
Q 048289           75 FSLPHLQILNLAFN-DFNYS---YISPGFTRFPNLAHLNLSVSSFSGQI----PAEISHLSKLVSLDLSGNSQLGLDTPV  146 (920)
Q Consensus        75 ~~l~~L~~L~Ls~~-~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~~~----p~~l~~l~~L~~L~Ls~n~~~~~~~~~  146 (920)
                      ..-+.|++|+|+++ .+...   .+-.++..-+.|+.|+|++|.+.+.-    ...+..-+.|++|+|++|.+...+...
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34577888888875 65432   12344566778888888888887432    333445677888888888776655556


Q ss_pred             HHHHHhcCCCCCEEEcCCC---CCCCC----cchhccCCCCCCEEEccCCc
Q 048289          147 LKALVQNLNELQELVLNSV---DMSYE----VPSFLTNLSSLTSLDLGNCG  190 (920)
Q Consensus       147 l~~~~~~l~~L~~L~L~~~---~~~~~----~~~~l~~l~~L~~L~Ls~n~  190 (920)
                      +...+..-+.|++|+|+++   .+...    +...+..-+.|+.|+++.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            6667777777888888765   33322    23445555677777776554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.40  E-value=0.0035  Score=56.34  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             cEEEcCCCcCC-CCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289          727 TTIDLSGNKFQ-GRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA  785 (920)
Q Consensus       727 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  785 (920)
                      +.+|.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777777776 34554332  35677777777777666666677777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.06  E-value=0.0086  Score=53.76  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             ceEecccCcCC--CCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCC
Q 048289          494 RYLDLRSNSLK--GSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN  549 (920)
Q Consensus       494 ~~L~L~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (920)
                      ..++.+++.++  ..+...+++++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777776  444456778999999999998877888888999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	920
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 99.1 bits (245), Expect = 3e-23
 Identities = 74/284 (26%), Positives = 109/284 (38%), Gaps = 24/284 (8%)

Query: 32  SWKEEKDCC--SWDGVTCDMMTG--HVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAF 87
           SW    DCC  +W GV CD  T    V  LDLS   L    P  SSL +LP+L  L +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 88  NDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVL 147
            +     I P   +   L +L ++ ++ SG IP  +S +  LV+LD S N+  G   P +
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 148 KALVQNL------NELQELVLNSVDMSY-------------EVPSFLTNLSSLTSLDLGN 188
            +L   +      N +   + +S                        T  +   +    +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 189 CGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLG 248
             +       +F        I     +L     KV  S  L  +DL      G++P  L 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292
            L  L  L++S+NN  G IP    NLQ+      +NNK     P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 1e-16
 Identities = 74/306 (24%), Positives = 120/306 (39%), Gaps = 30/306 (9%)

Query: 233 DLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSG--HIPSTLSNLQQLRHLDLSNN-KFTG 289
           D     ++G +  +     ++  LDLS  N      IPS+L+NL  L  L +       G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
            IP   A LTQL +L  ++  ++G I   +S++ +LVT+  SYN+L+GT+P  + + P L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409
             I    N+++G+I +S      L      S N         FA L         +    
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 410 LSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK 469
            +++L  +        L+ +S         L         DL +N+I G +P  +     
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL--DLRNNRIYGTLPQGLTQ--- 266

Query: 470 DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGE 527
                                K L  L++  N+L G IP        +  + +NNK    
Sbjct: 267 --------------------LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Query: 528 IPLSFC 533
            PL  C
Sbjct: 307 SPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 1e-15
 Identities = 64/270 (23%), Positives = 95/270 (35%), Gaps = 10/270 (3%)

Query: 580 SKGSRLTILNLNDNQLEGSVPL--SLVNCSFLEVLDV-GNNRINGTFPAWLGALSELQVL 636
           ++  R+  L+L+   L    P+  SL N  +L  L + G N + G  P  +  L++L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 637 ILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696
            +      G I           L  LD S N  +G LP         +    + +   G 
Sbjct: 107 YITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 697 MYINYGNEYYSAILTVKGVN----MEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKG 752
           +  +YG+            N           N+                 V+   +    
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 753 LNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPI 812
                          +     L  LDL +N++ G +P  LT L FL  LN+S N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 813 PQGKQFHTFSSDSYNGNMGLCGFPLSEKCS 842
           PQG     F   +Y  N  LCG PL   C+
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.2 bits (165), Expect = 7e-13
 Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 23/281 (8%)

Query: 365 NSISELVNLIDLSLSSNNLSGNVEL-YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYL 423
           ++ ++   + +L LS  NL     +    A L  L  L +   +  +  + P  +    L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 424 SMLSLSSCNISEFPDFLRTQHR-LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
             L ++  N+S       +Q + L  LD S N + G +P  I ++        +   N +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD--GNRI 161

Query: 483 TGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
           +G                 ++  S          +++S N+L+G+IP +F N++ + +V+
Sbjct: 162 SG-----------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203

Query: 543 LSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLS 602
           LS N L G       +           N              L  L+L +N++ G++P  
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 603 LVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
           L    FL  L+V  N + G  P   G L    V    +N+ 
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.8 bits (151), Expect = 5e-11
 Identities = 41/257 (15%), Positives = 80/257 (31%), Gaps = 29/257 (11%)

Query: 349 LESIDLRNNQLTG--SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
           + ++DL    L     I +S++ L  L  L +   N          A+L  L  L ++H 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 407 SLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
           ++S +    ++     +++    +      P  + +   L  +    N+I G IP+   +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRS-------------------------- 500
             K   +     +     I              S                          
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 501 -NSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
             +       L  +LN + + NN++ G +P     +  +  +N+S N+L G IP      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 560 SLWFLDMRMNNFHGSIP 576
                    N      P
Sbjct: 292 RFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.8 bits (229), Expect = 4e-21
 Identities = 57/292 (19%), Positives = 106/292 (36%), Gaps = 13/292 (4%)

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
           +  L  V    +       +DL              NL  L  L L  N  S   P   +
Sbjct: 19  DLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 273 NLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332
            L +L  L LS N+       +   L +L   +    ++   + + ++    +V +  + 
Sbjct: 77  PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNP 135

Query: 333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMF 392
              +G           L  I + +  +T +I   +    +L +L L  N ++        
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDA-ASL 191

Query: 393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLS 452
             L NL  L LS NS   +      ++ P+L  L L++  + + P  L     +Q++ L 
Sbjct: 192 KGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250

Query: 453 DNQIRGGIPNWIWNVGKDT----LNHLNLSHNFLTGIELLPWKNLRYLDLRS 500
           +N I     N     G +T     + ++L  N +   E+ P    R + +R+
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 8e-17
 Identities = 52/302 (17%), Positives = 97/302 (32%), Gaps = 28/302 (9%)

Query: 103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVL 162
           P+ A L+L  +  +     +  +L  L +L L  N    +           L +L+ L L
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLYL 86

Query: 163 NSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPK 222
           +   +          L  L   +         + +++F   N   ++      L S   +
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEIT----KVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 223 VNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDL 282
                 ++ +               G    LT L L  N  +    ++L  L  L  L L
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 283 SNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG 342
           S N  +       AN   L  L  +NN+L       ++    +  +YL  N+++  I S 
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNIS-AIGSN 260

Query: 343 LFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLS-GNVELYMFAELKNLLGL 401
            F  P                    ++  +   +SL SN +    ++   F  +     +
Sbjct: 261 DFCPPGY-----------------NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

Query: 402 DL 403
            L
Sbjct: 304 QL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 3e-16
 Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 34/303 (11%)

Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383
            L  +  S   L   +P  L        +DL+NN++T         L NL  L L +N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQ 443
           S  +    FA L  L  L LS N L                                +T 
Sbjct: 68  SK-ISPGAFAPLVKLERLYLSKNQLK------------------------ELPEKMPKTL 102

Query: 444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503
             L++ +    ++R  + N +  +    L    L  + +        K L Y+ +   ++
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
                 LPPSL  + +  NK++     S   ++++  + LS NS++ +    LAN+    
Sbjct: 163 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 564 LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG------SVPLSLVNCSFLEVLDVGNN 617
                NN    +P   +    + ++ L++N +          P      +    + + +N
Sbjct: 223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

Query: 618 RIN 620
            + 
Sbjct: 283 PVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 3e-14
 Identities = 52/257 (20%), Positives = 91/257 (35%), Gaps = 10/257 (3%)

Query: 422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
           +L ++  S   + + P  L       +LDL +N+I         N+    L+ L L +N 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKN--LHTLILINNK 66

Query: 482 LTGI---ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSI 538
           ++ I      P   L  L L  N LK     +P +L  + V  N+++      F  ++ +
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGS 598
             V L  N L        A   +  L                    LT L+L+ N++   
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186

Query: 599 VPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK 658
              SL   + L  L +  N I+      L     L+ L L +N+                
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKY 243

Query: 659 LRILDLSNNEFTGVLPT 675
           ++++ L NN  + +   
Sbjct: 244 IQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 49/324 (15%), Positives = 99/324 (30%), Gaps = 36/324 (11%)

Query: 492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM 551
           +LR +      L+     LPP    + + NNK++      F N+ ++  + L NN ++ +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 552 IPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLE 610
            P   A    L  L +  N       +       L +      ++  SV   L     +E
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 611 VLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
            L     + +G        + +L  + +           ++ +   P L  L L  N+ T
Sbjct: 131 -LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGNKIT 184

Query: 671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTID 730
            V              G + ++       +  N  +   L +    +             
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----------- 233

Query: 731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL------IPYSLENLTQLESLDLSSNKV 784
                    +P  +     ++ +   +N ++ +       P           + L SN V
Sbjct: 234 ---------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

Query: 785 AGEIPWQLTSLNFLQVLNLSQNQL 808
                W++    F  V   +  QL
Sbjct: 285 QY---WEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 43/230 (18%), Positives = 66/230 (28%), Gaps = 29/230 (12%)

Query: 609 LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNE 668
             +LD+ NN+I          L  L  LIL +N+       +       KL  L LS N+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQ 90

Query: 669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTT 728
              +         +  +H N  +                       V   +   LN    
Sbjct: 91  LKELPEKMPKTLQELRVHENEIT----------------------KVRKSVFNGLNQMIV 128

Query: 729 IDLSG--NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
           ++L     K  G        +  L  +  +   +T +          L  L L  NK+  
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITK 185

Query: 787 EIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFP 836
                L  LN L  L LS N +               + +  N  L   P
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             +  S    + ++P+ +        L+  +NK+T +     +NL  L +L L +NK++ 
Sbjct: 13  RVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 787 EIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLS 838
             P     L  L+ L LS+NQL     +  +         N    +     +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 22/112 (19%), Positives = 38/112 (33%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
             +DL  NK           L +L  L   +NK++ + P +   L +LE L LS N++  
Sbjct: 34  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

Query: 787 EIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFPLS 838
                  +L  L+V      ++   +  G           N          +
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.0 bits (227), Expect = 3e-20
 Identities = 60/353 (16%), Positives = 117/353 (33%), Gaps = 29/353 (8%)

Query: 470 DTLNHLNLSHNFLTGIELLPW-KNLRYLDLRSNSLKGSIPF--------LPPSLNFISVS 520
           D +  L      +  I+ + +  NL  ++  +N L    P         +  + N I+  
Sbjct: 44  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI 103

Query: 521 NNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFS 580
               +          ++         +L  +    L+++++  +               +
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 163

Query: 581 KGSRLTILNLNDNQLEGSVPLSLV-------NCSFLEVLDVGNNRINGTFPAWLGALSEL 633
           + + L  L          +  + V         + LE L   NN+I+   P  +   + L
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNL 221

Query: 634 QVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAE 693
             L L  N+     T +        L  LDL+NN+ + + P         +  G N    
Sbjct: 222 DELSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI-S 276

Query: 694 GGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGL 753
             +            +   +  ++     L   T + L  N      P  V  L  L+ L
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 334

Query: 754 NFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN 806
            F++NK++     SL NLT +  L    N+++   P  L +L  +  L L+  
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 2e-18
 Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 20/233 (8%)

Query: 77  LPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSG 136
           L +L  L       N         +  NL  L  + +  S   P  I     L  L L+G
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNG 228

Query: 137 NSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIP 196
           N    + T      + +L  L +L L +  +S   P  L+ L+ LT L LG   +    P
Sbjct: 229 NQLKDIGT------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

Query: 197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL 256
                           N+N       ++    L ++ LY  N     P  + +L++L  L
Sbjct: 281 LAGLTALTNLE----LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 334

Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNN 309
             + N  S    S+L+NL  +  L   +N+ +   P   ANLT+++ L  ++ 
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 8e-18
 Identities = 70/400 (17%), Positives = 149/400 (37%), Gaps = 40/400 (10%)

Query: 126 LSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLD 185
           L++ +   L   +     +        +L+++  L  + + +       +  L++LT ++
Sbjct: 21  LAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 186 LGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPA 245
             N  L    P  +  L  L +++++ N+           +     +       +     
Sbjct: 73  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID---- 126

Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
                      +L+  N      +T+S++  L  L        G        L  L+ L+
Sbjct: 127 --------PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 306 FSNNQLN-GPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSIS 364
             +   N     S +++L +L ++  + N ++   P G+ T+  L+ + L  NQL     
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--I 234

Query: 365 NSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLS 424
            +++ L NL DL L++N +S    L   + L  L  L L  N +S  + L   ++   L 
Sbjct: 235 GTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 425 MLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTG 484
           +    + N  E    +     L  L L  N I    P  + ++ K  L  L  ++N ++ 
Sbjct: 292 L----NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK--LQRLFFANNKVSD 343

Query: 485 I-ELLPWKNLRYLDLRSNSLKGSIPFLP-PSLNFISVSNN 522
           +  L    N+ +L    N +    P      +  + +++ 
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 1e-17
 Identities = 74/367 (20%), Positives = 128/367 (34%), Gaps = 43/367 (11%)

Query: 67  SIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHL 126
           ++    S   L  +  L              G     NL  +N S +  +   P  + +L
Sbjct: 33  NVTDTVSQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNL 87

Query: 127 SKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDL 186
           +KLV + ++ N    +        +  L      + +   +          LSS T  D+
Sbjct: 88  TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 147

Query: 187 GNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNW-------SSPLRFMDLYGCNF 239
                  S+ +  F         L+    L  +    N        +       L   N 
Sbjct: 148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 207

Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
             S    LG L+ L  L L+ N        TL++L  L  LDL+NN+ +   P   + LT
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 263

Query: 300 QLSFLDFSNNQLNGPIS--------------------SSVSRLHSLVTIYLSYNSLNGTI 339
           +L+ L    NQ++                        S +S L +L  + L +N+++   
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 340 PSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLL 399
           P    T   L+ +   NN+++    +S++ L N+  LS   N +S    L   A L  + 
Sbjct: 324 PVSSLTK--LQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPL---ANLTRIT 376

Query: 400 GLDLSHN 406
            L L+  
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 3e-17
 Identities = 79/402 (19%), Positives = 142/402 (35%), Gaps = 37/402 (9%)

Query: 186 LGNCGLQGSIPEN-IFRLPNLQNLILSY--NKNLTSVFPKVNWSSPLRFMDLYGCNFMGS 242
           LG+  +    P N IF    L   + +     N+T    + +    +  +       + S
Sbjct: 1   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLG-IKS 58

Query: 243 IPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLS-------------NNKFTG 289
           I   +  L+ LT ++ S N  +   P  L NL +L  + ++              N    
Sbjct: 59  ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGL 115

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
            +               + N+L    ++            L   S    +      + L 
Sbjct: 116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT 175

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409
               L  +    S  + +++L NL  L  ++N +S    L +     NL  L L+ N L 
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQL- 231

Query: 410 LSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK 469
               +   +S   L+ L L++  IS          +L  L L  NQI    P        
Sbjct: 232 --KDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTALT 288

Query: 470 DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEI 528
           +   + N   +      L   KNL YL L  N++    P      L  +  +NNK+S   
Sbjct: 289 NLELNENQLEDISPISNL---KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-- 343

Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMN 569
             S  N+++I +++  +N ++ + P  LAN + +  L +   
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 7e-15
 Identities = 77/380 (20%), Positives = 141/380 (37%), Gaps = 44/380 (11%)

Query: 104 NLAHLNLS---VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQEL 160
            +  L      + S  G     + +L+ L  ++ S N    +        ++NL +L ++
Sbjct: 45  QVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP------LKNLTKLVDI 93

Query: 161 VLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVF 220
           ++N+  ++   P                 GL     +     P      L+  +  ++  
Sbjct: 94  LMNNNQIADITPLANLTN---------LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 144

Query: 221 PKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHL 280
             ++  S L  +         +    L NL+ L  LD+S N       S L+ L  L  L
Sbjct: 145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESL 202

Query: 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
             +NN+ +   P      T L  L  + NQL      +++ L +L  + L+ N ++   P
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 258

Query: 341 SGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLG 400
               T   L  + L  NQ++      IS L  L  L+    N +   ++   + LKNL  
Sbjct: 259 LSGLTK--LTELKLGANQISN-----ISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGI 460
           L L  N++S    +   SS   L  L  ++  +S+        + +  L    NQI    
Sbjct: 312 LTLYFNNIS---DISPVSSLTKLQRLFFANNKVSDVSSLANLTN-INWLSAGHNQISDLT 367

Query: 461 PNWIWNVGKDTLNHLNLSHN 480
           P  + N+ +  +  L L+  
Sbjct: 368 P--LANLTR--ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 33  WKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNY 92
              E +    + ++      ++T L L  + +    P    + SL  LQ L  A N  + 
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFANNKVS- 342

Query: 93  SYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGN 137
                      N+  L+   +  S   P  +++L+++  L L+  
Sbjct: 343 --DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.002
 Identities = 66/345 (19%), Positives = 113/345 (32%), Gaps = 47/345 (13%)

Query: 475 LNLSHNFLTG-IELLPWKNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGEIPLS 531
             L    +T  +       +  L      +K SI  +    +L  I+ SNN+L+   PL 
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLK 85

Query: 532 FCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLN 591
                     NL+      M    +A+ +       +        Q         + NLN
Sbjct: 86  ----------NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 592 DNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV 651
             +L  +    +   S L  L   +     T    L  L+ L+ L + SN+         
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL-- 193

Query: 652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILT 711
                  L  L  +NN+ + + P     N   +    N   + G +              
Sbjct: 194 --AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-------------- 237

Query: 712 VKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL 771
                      L   T +DL+ N+     P  +  L  L  L    N+++ + P  L  L
Sbjct: 238 ---------ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 284

Query: 772 TQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGK 816
           T L +L+L+ N++  E    +++L  L  L L  N +    P   
Sbjct: 285 TALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSS 327

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 53/269 (19%), Positives = 92/269 (34%), Gaps = 11/269 (4%)

Query: 118 QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTN 177
            +P  I        + L GN    +         +    L  L L+S  ++    +  T 
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTG 78

Query: 178 LSSLTSLDLGNCGLQGSI-PENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYG 236
           L+ L  LDL +     S+ P     L  L  L L                + L+++ L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 237 CNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
                    +  +L  LT+L L  N  S         L  L  L L  N+     P  F 
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN 356
           +L +L  L    N L+   + +++ L +L  + L+ N       +       L+     +
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSS 257

Query: 357 NQLTGSISNSISELVNLIDLSLSSNNLSG 385
           +++  S+      L       L++N+L G
Sbjct: 258 SEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 5e-16
 Identities = 51/264 (19%), Positives = 87/264 (32%), Gaps = 6/264 (2%)

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
            VP  +   ++   + L    +      +     NL  L L  N             + L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 230 RFMDLYGCNFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
             +DL     + S+ PA+   L +L  L L         P     L  L++L L +N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
                 F +L  L+ L    N+++     +   LHSL  + L  N +    P        
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
           L ++ L  N L+   + +++ L  L  L L+ N    +           L     S + +
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEV 260

Query: 409 SLSTLLPV-NSSFPYLSMLSLSSC 431
             S    +       L+   L  C
Sbjct: 261 PCSLPQRLAGRDLKRLAANDLQGC 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 8e-15
 Identities = 61/308 (19%), Positives = 105/308 (34%), Gaps = 37/308 (12%)

Query: 179 SSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP-LRFMDLYGC 237
               +      GLQ ++P  I      Q + L  N  ++ V      +   L  + L+  
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN 66

Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHI-PSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
                  A+   L+ L  LDLS N     + P+T   L +L  L L         P +F 
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN 356
            L  L +L   +N L      +   L +L  ++L  N ++            L+ + L  
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 357 NQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV 416
           N++     ++  +L  L+ L L +NNLS  +     A L+ L  L L+ N          
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV------- 238

Query: 417 NSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLN 476
                         C       +L+          S +++   +P  +        +   
Sbjct: 239 ------------CDCRARPLWAWLQK------FRGSSSEVPCSLPQRLAG-----RDLKR 275

Query: 477 LSHNFLTG 484
           L+ N L G
Sbjct: 276 LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 56/279 (20%), Positives = 93/279 (33%), Gaps = 16/279 (5%)

Query: 326 VTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSG 385
           VT       L   +P G+  +   + I L  N+++   + S     NL  L L SN L+ 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 386 NVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE-FPDFLRTQH 444
                              +  L              L  L L  C + E  P   R   
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYL---DLRSN 501
            LQ L L DN ++    +   ++G   L HL L  N ++ +    ++ L  L    L  N
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGN--LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 502 SLKGSIPFLPPSLNFI---SVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN 558
            +    P     L  +    +  N LS     +   + ++ Y+ L++N            
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247

Query: 559 SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG 597
           + L       +    S+PQ     +   +  L  N L+G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 3e-09
 Identities = 49/317 (15%), Positives = 84/317 (26%), Gaps = 51/317 (16%)

Query: 496 LDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPC 555
                  L+     +P +   I +  N++S     SF    ++  + L +N L  +    
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 556 LANSSLWFLDMRMNNFHGSI--PQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLD 613
               +L       +N       P TF    RL  L+L+   L+   P      + L+ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 614 VGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVL 673
           + +N +          L  L  L L  NR       +        L  L L  N    V 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH--SLDRLLLHQNRVAHVH 193

Query: 674 PTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSG 733
           P  +    + M      +                                     + L+ 
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRA-------------------LQYLRLND 234

Query: 734 NKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLT 793
           N +                              +      L+    SS++V   +P    
Sbjct: 235 NPWVCDCR-------------------------ARPLWAWLQKFRGSSSEVPCSLP---Q 266

Query: 794 SLNFLQVLNLSQNQLVG 810
            L    +  L+ N L G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 52/300 (17%), Positives = 92/300 (30%), Gaps = 28/300 (9%)

Query: 533 CNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLND 592
           C        +     L   +P  +  ++   + +  N        +F     LTIL L+ 
Sbjct: 8   CYNEPKVTTSCPQQGLQA-VPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 593 NQLEGSVPLSLVNCSFLEVLDVGNNRINGT-FPAWLGALSELQVLILRSNRFHGPITYSV 651
           N L      +    + LE LD+ +N    +  PA    L  L  L L  +R         
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL--DRCGLQELGPG 123

Query: 652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILT 711
                  L+ L L +N    +    +                   ++ N           
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL---------FLHGNR---------- 164

Query: 712 VKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENL 771
           +  V     + L+    + L  N+     P     L  L  L    N L+ L   +L  L
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 772 TQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP---QGKQFHTFSSDSYNG 828
             L+ L L+ N    +         +LQ    S +++   +P    G+     +++   G
Sbjct: 225 RALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 44/318 (13%), Positives = 85/318 (26%), Gaps = 53/318 (16%)

Query: 470 DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP---PSLNFISVSNNKLSG 526
           +     +     L  + +      + + L  N +            +L  + + +N L+ 
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 527 EIPLSFCNMSSIFYVNLSNNSLNGMIPPCL--ANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
               +F  ++ +  ++LS+N+    + P        L  L +         P  F   + 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
           L  L L DN L+     +  +   L  L +  NRI+         L              
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-------------- 176

Query: 645 GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNE 704
                         L  L L  N    V P  +    + M      +             
Sbjct: 177 ------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 705 YYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLI 764
                                   + L+ N +             L+    S +++   +
Sbjct: 225 RA-------------------LQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 765 PYSLEN--LTQLESLDLS 780
           P  L    L +L + DL 
Sbjct: 265 PQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 11/263 (4%)

Query: 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641
                  +     L+ +VP+ +      + + +  NRI+    A   A   L +L L SN
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINY 701
                   + T     +   L   +N     +    F     +   + +      +    
Sbjct: 67  VLARIDAAAFTGLALLEQLDLS--DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 702 GNEYYSAILTVKGVNMEMEKVLNIFT------TIDLSGNKFQGRIPEVVGKLNSLKGLNF 755
                +        N       + F        + L GN+           L+SL  L  
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 756 SHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQG 815
             N++  + P++  +L +L +L L +N ++      L  L  LQ L L+ N  V      
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 816 KQFHTFSSDSYNGNMGLCGFPLS 838
             +        + +   C  P  
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQR 267

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 2e-11
 Identities = 50/448 (11%), Positives = 115/448 (25%), Gaps = 23/448 (5%)

Query: 371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS---LSTLLPVNSSFPYLSMLS 427
           +++  L +    LS      +   L+    + L    L+      +       P L+ L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 428 LSSCNISE-----FPDFLRTQH-RLQILDLSDNQIRGGIPNWIWNVGK--DTLNHLNLSH 479
           L S  + +         L+T   ++Q L L +  + G     + +  +   TL  L+LS 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 480 NFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF 539
           N L    L                         + +   +++   +          ++  
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 540 YVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599
                     G+        +L      + + +                    +   G V
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 600 PLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKL 659
            ++ +    L                      +L  ++                      
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEM 719
            + +        +               ++ S+           +  +  L   GV    
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 720 EKVLNIF---TTIDLSGNKFQGR----IPEVVGKLNSLKGLNFSHNKLTGLIPYSL---- 768
           + +         + L+           +   +   +SL+ L+ S+N L       L    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 769 -ENLTQLESLDLSSNKVAGEIPWQLTSL 795
            +    LE L L     + E+  +L +L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (150), Expect = 9e-11
 Identities = 45/442 (10%), Positives = 91/442 (20%), Gaps = 24/442 (5%)

Query: 397 NLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISE-----FPDFLRTQHRLQILDL 451
           ++  LD+    LS +    +        ++ L  C ++E         LR    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 452 SDNQIRGGIPNWIWNVGKD---TLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIP 508
             N++     + +    +     +  L+L +  LTG       +          L  S  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 509 FLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRM 568
            L  +   +                               + +             +   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 569 NNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG-------NNRING 621
                 + Q              ++    S     +         +             G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 622 TFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681
                 G L     L        G                  L      G          
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 682 QAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP 741
                             +              +      +    +   L     +    
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 742 EVVGKLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAGEIPWQLTS--- 794
            +    + L+ L  +   ++      +  +L     L  LDLS+N +      QL     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 795 --LNFLQVLNLSQNQLVGPIPQ 814
                L+ L L        +  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 1e-09
 Identities = 55/459 (11%), Positives = 111/459 (24%), Gaps = 22/459 (4%)

Query: 226 SSPLRFMDLYGCNF-MGSIPASLGNLSQLTYLDLSYNNFSG----HIPSTLSNLQQLRHL 280
           S  ++ +D+             L  L Q   + L     +      I S L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 281 DLSNNKFTGQIPCIFA-----NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335
           +L +N+                  ++  L   N  L G     +S     +      +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 336 NGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAEL 395
           +  +            +D +       +        +   L+          EL +    
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQ 455
            N  G+ +    L  S             + S +  ++        +   L +       
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 456 IRGGIPNWIWNVGKDTLN-HLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSL 514
           +               L                   + LR  +                 
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 515 NFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS 574
             +  +  +   ++   +    S      S+ S        L    +    +        
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 575 IPQTFSKGSRLTILNLNDNQLEG----SVPLSLVNCSFLEVLDVGNNRINGTFPAWLGA- 629
                  GS L +L L D  +      S+  +L+    L  LD+ NN +       L   
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 630 ----LSELQVLILRSNRFHGPITYSVTRFP--FPKLRIL 662
                  L+ L+L    +   +   +       P LR++
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (138), Expect = 3e-09
 Identities = 57/440 (12%), Positives = 112/440 (25%), Gaps = 18/440 (4%)

Query: 253 LTYLDLSYNNFS-GHIPSTLSNLQQLRHLDLSNNKFTGQ----IPCIFANLTQLSFLDFS 307
           +  LD+     S       L  LQQ + + L +   T      I         L+ L+  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 308 NNQLNGPISSSVSRL-----HSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGS 362
           +N+L       V +        +  + L    L G     L ++          +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 363 ISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPY 422
           + ++  +L+    L          +E    +         +         L   N+    
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
             +  L              +     +   + +   GI     ++ +  L    L    +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 483 TGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
             +          L        G        L  +  +   L                + 
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 543 LSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR-LTILNLNDNQLEGSVPL 601
                  G     L   S  F     ++F   + Q        ++   L D  +      
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 602 SLVNCSFLEVLDVGNNRINGT----FPAWLGALSELQVLILRSNRFHGPITYSVT---RF 654
                S L VL + +  ++ +      A L A   L+ L L +N         +    R 
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 655 PFPKLRILDLSNNEFTGVLP 674
           P   L  L L +  ++  + 
Sbjct: 424 PGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 53/468 (11%), Positives = 109/468 (23%), Gaps = 34/468 (7%)

Query: 180 SLTSLDLGNCGLQGS-IPENIFRLPNLQNLILSYNK----NLTSVFPKVNWSSPLRFMDL 234
            + SLD+    L  +   E +  L   Q + L            +   +  +  L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 235 YGCNFMGSIPASLG-----NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
                       +         ++  L L     +G     LS+  +        +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
            +      L     LD         +        S   +     +        +  + + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 350 ESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409
           E+      Q        +  L        S N       +   A L+ L         + 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 410 LSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK 469
           ++ L P                              L+  +        G          
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 470 DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP 529
                L       +                S+ L  +   L   ++   + +  +     
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 530 LSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
                 S +  + L++  ++                        S+  T      L  L+
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSC-------------------SSLAATLLANHSLRELD 403

Query: 590 LNDNQLEGSVPLSLV-----NCSFLEVLDVGNNRINGTFPAWLGALSE 632
           L++N L  +  L LV         LE L + +   +      L AL +
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-06
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 723 LNIFTTIDLSGNKFQ-GRIPEVVGKLNSLKGLNFSHNKLTG----LIPYSLENLTQLESL 777
           L+I  ++D+   +    R  E++  L   + +      LT      I  +L     L  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 778 DLSSNKVAGEIPWQLTSL-----NFLQVLNLSQNQ 807
           +L SN++       +          +Q L+L    
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 53/450 (11%), Positives = 97/450 (21%), Gaps = 27/450 (6%)

Query: 129 LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYE----VPSFLTNLSSLTSL 184
           + SLD+       L       L+  L + Q + L+   ++      + S L    +L  L
Sbjct: 4   IQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 185 DLGNCGLQGSIPENIFRL-----PNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF 239
           +L +  L       + +        +Q L L       +    ++ +             
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
              +  +   L     LD         +     +      L               +N  
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
                     Q        +  L        S N  +         S    ++       
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 360 TGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419
            G        L     L        G          + L   +           L    +
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
                 L    C +        +         S    +      +           +   
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI---SNNRLEDAGV 357

Query: 480 NFLTGIELLPWKNLRYLDLRSNSLKG-SIPFLP------PSLNFISVSNNKLSGEIPLSF 532
             L      P   LR L L    +   S   L        SL  + +SNN L     L  
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 533 C-----NMSSIFYVNLSNNSLNGMIPPCLA 557
                     +  + L +   +  +   L 
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 53/461 (11%), Positives = 113/461 (24%), Gaps = 22/461 (4%)

Query: 80  LQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLS 135
           +Q L++   + + +  +           + L     +      I + +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 136 GNSQLGLDTPVL-KALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGS 194
            N    +    + + L     ++Q+L L +  ++      L++             L  S
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP---TLQELHLS 120

Query: 195 IPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLT 254
                     L    L   +           S      +                +S   
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 255 YLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGP 314
             +         +  +   L+ L+           +  C     ++ S  + +       
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLG 239

Query: 315 ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI 374
                     L+       +L                  LR  +    +S + +EL +  
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNIS 434
              L    L    +L                +  S+             +     +    
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 435 EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNV--GKDTLNHLNLSHNFLT--GIELL-- 488
                 +    L++L L+D  +     + +        +L  L+LS+N L   GI  L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 489 ----PWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLS 525
               P   L  L L        +      L  +      L 
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEM---EDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 78  PHLQILNLAFNDFN---YSYISPGFTRFPNLAHLNLSVSSFSGQIPAEIS-----HLSKL 129
             L++L LA  D +    S ++       +L  L+LS +        ++          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 130 VSLDLSGNSQLGLDTPVLKALVQNLNELQEL 160
             L L            L+AL ++   L+ +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFN---YSYISPGFTRFPNLAHLNLSVS 113
           LD+ C  L         L  L   Q++ L            IS      P LA LNL  +
Sbjct: 7   LDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 114 SFSGQIPAEISHL-----SKLVSLDLSGN 137
                    +         K+  L L   
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 6/190 (3%)

Query: 170 EVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL 229
            +P  L      T L L    L       +     L  L L   +       +V+ + P+
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPV 78

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
                   N + S+P     L  LT LD+S+N  +      L  L +L+ L L  N+   
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 290 QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
             P +     +L  L  +NN L    +  ++ L +L T+ L  NSL  TIP G F S LL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 350 ESIDLRNNQL 359
               L  N  
Sbjct: 198 PFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 8/186 (4%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
             +   L+LS +       A +   ++L  L+L       L           L  L  L 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------GTLPVLGTLD 83

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP 221
           L+   +          L +LT LD+    L       +  L  LQ L L  N+  T    
Sbjct: 84  LSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
            +  +  L  + L   N        L  L  L  L L  N+    IP        L    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 282 LSNNKF 287
           L  N +
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 8/206 (3%)

Query: 605 NCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDL 664
             +    ++     +    P  L    +  +L L  N  +     ++   P+ +L  L+L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNL 62

Query: 665 SNNEFTGVLPTRYFQN--FQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKV 722
              E T +             + H    S       +        +   +  + +   + 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
           L     + L GN+ +   P ++     L+ L+ ++N LT L    L  L  L++L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 783 KVAGEIPWQLTSLNFLQVLNLSQNQL 808
            +   IP      + L    L  N  
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 15/247 (6%)

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
           +V+  +    ++    N   ++P  L      T L LS N       +TL    +L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
           L   + T         +     L  +  Q    +  ++  L  L   +    SL      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA-- 119

Query: 342 GLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGL 401
                               ++   +      ++    +NN    +   +   L+NL  L
Sbjct: 120 --LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 402 DLSHNSLSLSTLLPVNSSFPYLSMLSLS------SCNISEFPDFLRTQHRLQILDLSDNQ 455
            L  N  SL T+         L    L       +C I  F  +L+       +      
Sbjct: 178 LLQEN--SLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVD 235

Query: 456 IRGGIPN 462
           ++    N
Sbjct: 236 VKAMTSN 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 5/177 (2%)

Query: 472 LNHLNLSHNFLTGI---ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEI 528
              L+LS N L       L+P+  L  L+L    L          +      ++     +
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
           PL    + ++  +++S N L  +    L             N   ++P      +     
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 589 NLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
                N L       L     L+ L +  N +  T P        L    L  N + 
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 7e-08
 Identities = 39/212 (18%), Positives = 61/212 (28%), Gaps = 25/212 (11%)

Query: 492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM 551
           +   ++    +L    P LP     + +S N L      +    + +  +NL    L  +
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 552 I----------------------PPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILN 589
                                         +L  LD+  N               L  L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITY 649
           L  N+L+   P  L     LE L + NN +       L  L  L  L+L+ N      T 
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL---YTI 187

Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF 681
               F    L    L  N +       YF+ +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 32/255 (12%), Positives = 61/255 (23%), Gaps = 51/255 (20%)

Query: 318 SVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLS 377
            VS++ S + +     +L   +P  L        + L  N L      ++     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 378 LSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP 437
           L                                                        +  
Sbjct: 62  LDRAE------------------------------------------------LTKLQVD 73

Query: 438 DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLD 497
             L     L +       +             D   +   S        L   + L    
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 498 LRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA 557
               +L   +    P L  +S++NN L+         + ++  + L  NSL  +      
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 558 NSSLWFLDMRMNNFH 572
           +  L F  +  N + 
Sbjct: 194 SHLLPFAFLHGNPWL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 40/247 (16%), Positives = 69/247 (27%), Gaps = 10/247 (4%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
           +   C R     P     FS   +Q ++L+ +    S +    ++   L +L+L     S
Sbjct: 26  IAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84

Query: 117 GQIPAEISHLSKLVSLDLSGNSQLGLDT-----PVLKALVQNLNELQELVLNSVDMSYEV 171
             I   ++  S LV L+LSG S                L +                   
Sbjct: 85  DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRF 231
               T      S    N                +   +          F +    + L+ 
Sbjct: 145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204

Query: 232 MDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ 290
           + L  C  +       LG +  L  L +      G +       + L HL ++ + FT  
Sbjct: 205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTI 261

Query: 291 IPCIFAN 297
                 N
Sbjct: 262 ARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 38/262 (14%), Positives = 83/262 (31%), Gaps = 15/262 (5%)

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
           ++L+  +L+  +   L +  +       +     + + FS   R+  ++L+++ +E S  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTL 63

Query: 601 LSLV-NCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKL 659
             ++  CS L+ L +   R++      L   S L  L L                   +L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEM 719
             L+              +       H     A             Y   L    ++  +
Sbjct: 124 DELN------------LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 720 EKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSH-NKLTGLIPYSLENLTQLESLD 778
            +  N+           +    +   +LN L+ L+ S    +       L  +  L++L 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 779 LSSNKVAGEIPWQLTSLNFLQV 800
           +      G +     +L  LQ+
Sbjct: 232 VFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 25/286 (8%)

Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
             LDL+  N    +   L +   +       +     +   F+   ++  +D SN+ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 314 -PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVN 372
             +   +S+   L  + L    L+  I + L  +  L  ++L         S    + + 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLL 117

Query: 373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCN 432
                L   NLS   +         +  +  +   L+LS                  +  
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK--------------NLQ 163

Query: 433 ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH-NFLTG---IELL 488
            S+    +R    L  LDLSD+ +        +      L HL+LS    +     +EL 
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-LQHLSLSRCYDIIPETLLELG 222

Query: 489 PWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCN 534
               L+ L +      G++  L  +L  + ++ +  +     +  N
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 43/266 (16%), Positives = 81/266 (30%), Gaps = 15/266 (5%)

Query: 348 LLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS 407
           L +++DL    L   ++  +     +I      + +     L        +  +DLS++ 
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSV 57

Query: 408 LSLSTLLPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
           + +STL  + S    L  LSL    +S    + L     L  L+LS              
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 467 VGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSG 526
                L+ LNLS  F    + +                 S      +L+    +  K   
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHV----------SETITQLNLSGYRKNLQKSDL 167

Query: 527 EIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDM-RMNNFHGSIPQTFSKGSRL 585
              +  C       ++ S    N         + L  L + R  +          +   L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEV 611
             L +     +G++ L       L++
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
            T+DL+G      +   +     +       + +   +     +  +++ +DLS++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 787 E-IPWQLTSLNFLQVLNLSQNQLVGPIPQ 814
             +   L+  + LQ L+L   +L  PI  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 55/320 (17%), Positives = 100/320 (31%), Gaps = 23/320 (7%)

Query: 491 KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNG 550
           +    L+L +  L  S+P LPP L  +  S N L+ E+P    ++ S+   N +  +L+ 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 95

Query: 551 MIP--PCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF 608
           + P    L  S+     +        +       + L  L      LE     +      
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 609 LEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNE 668
            E+ ++            L  L +L + +      +  +         P L  +   NN 
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTT 728
              +           +              + + +               +   L+    
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS-----------ENIFSGLSELPP 264

Query: 729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEI 788
                N     I  +     SL+ LN S+NKL  L         +LE L  S N +  E+
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHL-AEV 319

Query: 789 PWQLTSLNFLQVLNLSQNQL 808
           P    +   L+ L++  N L
Sbjct: 320 PELPQN---LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 2e-08
 Identities = 56/336 (16%), Positives = 102/336 (30%), Gaps = 27/336 (8%)

Query: 472 LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLS 531
            + L L++  L+ +  LP  +L  L    NSL   +P LP SL  + V NN L     L 
Sbjct: 40  AHELELNNLGLSSLPELP-PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 532 -----FCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLT 586
                    ++         + + +    + N+SL  L     +                
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 587 ILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGP 646
           + NL       +   SL     L +  + +          L  L  L  L       +  
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPL-SLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 647 ITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYY 706
            T          L + D    +   +  +  F +    +    +       Y+N  +   
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 707 SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPY 766
                       +  +      +++S NK      E+      L+ L  S N L  +   
Sbjct: 277 ----------RSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVP-- 320

Query: 767 SLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLN 802
             E    L+ L +  N +  E P    S+  L++ +
Sbjct: 321 --ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 57/331 (17%), Positives = 106/331 (32%), Gaps = 26/331 (7%)

Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQ 310
            Q   L+L+    S  +P    +L+    L  S N  T ++P +  +L  L   + +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 311 LNGPISSSVSRLHSLVTIYL-----------SYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
           L+           S   +               +  N ++       P LE I   NNQL
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 360 TGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419
                      +  I    +S     ++ L + + +     L+      +L  L  + + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479
              L  L     ++            L  L  S   +      +          +   + 
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 480 NFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF 539
           +           +L  L++ +N L   +P LPP L  +  S N L+ E+P    N+  + 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVPELPQNLKQL- 329

Query: 540 YVNLSNNSLNGMIPPCLANSSLWFLDMRMNN 570
             ++  N L    P    +      D+RMN+
Sbjct: 330 --HVEYNPLRE-FPDIPES----VEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 8e-07
 Identities = 48/318 (15%), Positives = 86/318 (27%), Gaps = 16/318 (5%)

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
              ++L     + S+P    +L     L  S N+ +  +P    +L+ L   + +    +
Sbjct: 40  AHELELNNLG-LSSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 289 GQIP--CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS 346
              P                     +      V          L  +       +     
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 347 PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406
                       +    ++        + L       +   EL     L  L  +   +N
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 407 SLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWN 466
            L     LP +     +    L+                     LS+        N   N
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 467 VGKD------TLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVS 520
             +       +L  LN+S+N L  +  LP   L  L    N L   +P LP +L  + V 
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPALP-PRLERLIASFNHLA-EVPELPQNLKQLHVE 332

Query: 521 NNKLSGEIPLSFCNMSSI 538
            N L  E P    ++  +
Sbjct: 333 YNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 210 LSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPS 269
              N +   +    +    L  +++     +  +PA    L     L  S+N+ +  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321

Query: 270 TLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303
              N   L+ L +  N    + P I  ++  L  
Sbjct: 322 LPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 8e-06
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 9/102 (8%)

Query: 224 NWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLS 283
           +  S L     Y       I +       L  L++S N     +P+    L+    L  S
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIAS 312

Query: 284 NNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSL 325
            N    ++P +  NL Q   L    N L          +  L
Sbjct: 313 FNHLA-EVPELPQNLKQ---LHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 51/327 (15%), Positives = 97/327 (29%), Gaps = 29/327 (8%)

Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383
               + L+   L+ ++P      P LES+    N LT  +      L +L+  + +   L
Sbjct: 39  QAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQ 443
           S    L  +  + N     L     S    +    +     +  L            + +
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 444 HRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503
              ++ +L          N +  +    L+  ++        EL   +NL +L       
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 504 KGSIPFLPPSLNFISVSNNKLS---------------GEIPLSFCNMSSIFYVNLSNNSL 548
                      +  +++                        +          +   N S 
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 549 NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF 608
           N +   C    SL  L++  N     +P       RL  L  + N L   VP    N   
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQN--- 325

Query: 609 LEVLDVGNNRINGTFPAWLGALSELQV 635
           L+ L V  N +   FP    ++ +L++
Sbjct: 326 LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 48/326 (14%), Positives = 86/326 (26%), Gaps = 28/326 (8%)

Query: 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
              ++L N  L+ S+        +L  L  S N+L+      +    ++L  L + +N+L
Sbjct: 40  AHELELNNLGLS-SLPELPP---HLESLVASCNSLT-----ELPELPQSLKSLLVDNNNL 90

Query: 409 SLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468
              + LP    +  +S   L      +   FL+              +   +        
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEI 528
           +        +  FLT I        +  DL  +                  +   L+   
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
             +    +               +       +      +   F       FS  S L   
Sbjct: 211 ADNNLLKTLPDLPPSLE-----ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPIT 648
               N     +         LE L+V NN++    PA       L+ LI   N       
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL----- 316

Query: 649 YSVTRFP--FPKLRILDLSNNEFTGV 672
                 P     L+ L +  N     
Sbjct: 317 ---AEVPELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 48/322 (14%), Positives = 92/322 (28%), Gaps = 20/322 (6%)

Query: 57  LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS----- 111
           L+L+   L  S+P        PHL+ L  + N        P   +   + + NL      
Sbjct: 43  LELNNLGLS-SLPE-----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV 171
                    +           + S    + +D   LK L      L+ +   +  +    
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 172 PSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRF 231
                   +    D  +      +P ++  +    N++    +     F    ++     
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
             L              N             F     +  S L +L       N  + +I
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLES 351
             +      L  L+ SNN+L   + +   RL  L     S+N L   +P        L+ 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVPELPQN---LKQ 328

Query: 352 IDLRNNQLTGSISNSISELVNL 373
           + +  N L     +    + +L
Sbjct: 329 LHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 31/295 (10%)

Query: 396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQ 455
           +    L+L++  L   + LP     P+L  L  S  +++E P+  ++   L + + +   
Sbjct: 38  RQAHELELNNLGL---SSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 456 IRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLN 515
           +    P   +    +            + ++++   N     L              +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 516 FISVSNNKLSGEIPLSFCNMSS--------IFYVNLSNNSLNGMIPPCLANSSLWFLDMR 567
                   L     +   N S              ++ N++   +P       L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 568 MNNFHGSIPQTFSKGSRLTILNLNDNQLEG--------SVPLSLVNCSFLEVLDVGNNRI 619
            N          S  +     N   +  E                  S L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 620 NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFP--FPKLRILDLSNNEFTGV 672
           +    +       L+ L + +N+            P   P+L  L  S N    V
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKL--------IELPALPPRLERLIASFNHLAEV 319

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 33/105 (31%)

Query: 174 FLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD 233
                 SL  L++ N  L   +P      P L+ LI S+N                    
Sbjct: 279 LCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNH------------------- 315

Query: 234 LYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLR 278
                 +  +P    N   L  L + YN      P    +++ LR
Sbjct: 316 ------LAEVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 8e-09
 Identities = 31/225 (13%), Positives = 72/225 (32%), Gaps = 16/225 (7%)

Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
           +    +    + +  +V  +  +   +  L      +       +  L+ L  L L+ N+
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 643 FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
                           L  +         +         Q++   +  S +  ++    G
Sbjct: 75  ITDLAPLK-------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
                 +         +  +  +     LS    Q      +  L+ L  L    NK++ 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 763 LIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQ 807
           + P  L +L  L  + L +N+++   P  L + + L ++ L+ NQ
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 9e-08
 Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 14/215 (6%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDT----PVLKALVQNLNEL 157
             N   +    S+ +  +    + L  + +L   G     ++       L  L    N++
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 158 QELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLT 217
            +L                N     S   G   ++     +           LS  + L 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 218 SVFPKVNWSSPLRFMDLY----GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSN 273
               ++   SPL  +         N   S    L NLS+LT L    N  S   P  L++
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
           L  L  + L NN+ +   P   AN + L  +  +N
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 17/225 (7%)

Query: 322 LHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSN 381
           L + + I    +++  T+         + ++      +T +I   +  L NLI L L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 382 NLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLR 441
            +               L                   +          +         L 
Sbjct: 74  QI-------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 442 TQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSN 501
               LQ+L L  NQI    P        +       +        L     L  L    N
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLT---NLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 502 SLKGSIPFLP-PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSN 545
            +    P    P+L  + + NN++S   PL+  N S++F V L+N
Sbjct: 184 KISDISPLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 35/222 (15%), Positives = 76/222 (34%), Gaps = 13/222 (5%)

Query: 395 LKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDN 454
           L N + +    ++++ +      +    ++ LS     ++     ++  + L  L+L DN
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDN 73

Query: 455 QIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSL 514
           QI       + N+ K T   L+ +                     +     +      +L
Sbjct: 74  QIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 515 NFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS 574
             + +  N+++   PL+         +  +  S    +      S L  L    N     
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL---SKLTTLKADDNKISDI 188

Query: 575 IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616
            P   +    L  ++L +NQ+    PL+  N S L ++ + N
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 29/234 (12%)

Query: 193 GSIPEN-----IFRLPNLQNLILS--YNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPA 245
           GSI +      IF  P L N I       N+T    + +    +  +  +G     +I  
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDG-ITTLSAFGTGVT-TIEG 58

Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
            +  L+ L  L+L  N  +   P           L  +  K    I  + +  T      
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 306 FSNNQLNGPISSSVSRL--------------HSLVTIYLSYNSLNGTIPSGLFTSPLLES 351
              +       S++  L                    YLS  +   +  + L     L +
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 352 IDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSH 405
           +   +N+++      ++ L NLI++ L +N +S    L   A   NL  + L++
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL---ANTSNLFIVTLTN 226

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 170 EVPSFLTNLSSLTSLDL-GNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSP 228
           E+P  +      T L L  N   + S      RLP+L  L L  N+           +S 
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
           ++ + L               L QL  L+L  N  S  +P +  +L  L  L+L++N F 
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
               C         +L   +         + S++  +    L ++    +  +
Sbjct: 140 ----CNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 10/180 (5%)

Query: 494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSI--FYVNLSNNSLNGM 551
             +D     LK     +P     + +++N+L                      N      
Sbjct: 11  TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70

Query: 552 IPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV 611
                  S +  L +  N       + F    +L  LNL DNQ+   +P S  + + L  
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130

Query: 612 LDVGNNRINGTFP-AWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFT 670
           L++ +N  N     AW       + L   + R   P            ++I DL ++EF 
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP-------SKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 8/168 (4%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTL-SNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
            IP  +      T L L+ N         L   L  L  L+L  N+ TG  P  F   + 
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 301 LSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360
           +  L    N++    +     LH L T+ L  N ++  +P        L S++L +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 361 GSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSL 408
                    L    +     +   G       ++++++   DL H+  
Sbjct: 140 C-----NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 22/175 (12%), Positives = 59/175 (33%), Gaps = 10/175 (5%)

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGK-----DTLNHLNLSHN 480
           +  +   + E P  +        L L+DN++     + ++         +   +      
Sbjct: 13  VDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70

Query: 481 FLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
                     + L+  + +   +   +      L  +++ +N++S  +P SF +++S+  
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130

Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQL 595
           +NL++N  N           L    +         P        + I +L  ++ 
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG 289
           R + L   +   ++   L  L  +T+LDLS+N      P+ L+ L+ L  L  S+N    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 290 QIPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNG 337
                     Q   L   NN+L        +     LV + L  NSL  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 475 LNLSHNFLTGIELLPW-KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFC 533
           L+L+H  LT +  L     + +LDL  N L+   P L        +  +  + E      
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 534 NMSSIFYVNLSNNSLNGMIPP-CLAN-SSLWFLDMRMNNFHG 573
           N+  +  + L NN L        L +   L  L+++ N+   
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 401 LDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGI 460
           L L+H  L   T+L        ++ L LS   +   P  L     L++L  SDN +    
Sbjct: 3   LHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 461 PNWIWNVGKDTLNHLNLSHNFLTGIELLPW----KNLRYLDLRSNSLKGSIPFLPPSL 514
                   +     L L +N L     +        L  L+L+ NSL      +   L
Sbjct: 60  GVANLPRLQ----ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERL 112

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSI 363
           L  ++  L       + +L  +  + LS+N L    P+    + L     L+ +      
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALEN 57

Query: 364 SNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP--VNSSFP 421
            + ++ L  L +L L +N L  +  +        L+ L+L  NSL     +   +    P
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 422 YLSML 426
            +S +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 161 VLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVF 220
           VL+       V   L  L  +T LDL +  L+   P  +  L  L+  +L  + N     
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLE--VLQASDNALENV 58

Query: 221 PKVNWSSPLRFMDLYGCNF-MGSIPASLGNLSQLTYLDLSYNNFS---GHIPSTLSNLQQ 276
             V     L+ + L        +    L +  +L  L+L  N+     G        L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 277 LRHL 280
           +  +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 517 ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIP 576
           + +++  L+  +      +  + +++LS+N L  + P   A   L  L    N       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 577 QTFSKGSRLTILNLNDNQLEG-SVPLSLVNCSFLEVLDVGNNRING 621
                  +   L L +N+L+  +    LV+C  L +L++  N +  
Sbjct: 61  VANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 4/122 (3%)

Query: 660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEM 719
           R+L L++ + T +           +   +N                          N++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 720 EKVLNIFTTIDLSGNKFQG-RIPEVVGKLNSLKGLNFSHNKLT---GLIPYSLENLTQLE 775
              L     + L  N+ Q     + +     L  LN   N L    G+     E L  + 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

Query: 776 SL 777
           S+
Sbjct: 121 SI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 376 LSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC--NI 433
           L L+  +L+    L    +L  +  LDLSHN L       +  +   L  L +     N 
Sbjct: 3   LHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNA 54

Query: 434 SEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNL 493
            E  D +    RLQ L L +N+++              L  LNL  N L   E +  +  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 494 RYL 496
             L
Sbjct: 114 EML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 327 TIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGN 386
            ++L++  L  T+   L    L+  +DL +N+L          L  L  L +   + +  
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNAL 55

Query: 387 VELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDF 439
             +   A L  L  L L +N L  S  +    S P L +L+L   ++ +    
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 6e-07
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            +   +      +   L            L        L+  ++     +  I  N+ +L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPEL 67

Query: 302 SFLDFSNNQLNG--PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
             L+ SNN+L     +SS V +  +L  + LS N L             LE + L  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 360 TGSISN 365
           + +  +
Sbjct: 128 SDTFRD 133

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 5/146 (3%)

Query: 194 SIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL 253
            +   + +  +     L          P +   +    ++    +   ++     N+ +L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPEL 67

Query: 254 TYLDLSYNNFSGH--IPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311
             L+LS N       + S +     L+ L+LS N+   +         +L  L    N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 312 NGPISSSVSRLHSLVTIYLSYNSLNG 337
           +       + + ++   +     L+G
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLDG 153

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 180 SLTSLDLGNCG-LQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCN 238
           S  +LDL         + +NI  + N ++ + +  + +    P+      L  ++L    
Sbjct: 23  SQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPE------LLSLNLSNNR 76

Query: 239 F--MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC--- 293
              +  + + +     L  L+LS N              +L  L L  N  +        
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 294 ----IFANLTQLSFLDFSNNQLNGPIS 316
               I     +L  LD   ++L  PI+
Sbjct: 137 YISAIRERFPKLLRLD--GHELPPPIA 161

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 11/133 (8%)

Query: 428 LSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL 487
           L    + +    +  ++      L    +R   P+    V ++    LN   +    + +
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRS-DPDL---VAQNIDVVLNRRSSMAATLRI 59

Query: 488 LP--WKNLRYLDLRSNSLKGSIPFLP-----PSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
           +      L  L+L +N L             P+L  +++S N+L  E  L       +  
Sbjct: 60  IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 541 VNLSNNSLNGMIP 553
           + L  NSL+    
Sbjct: 120 LWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 402 DLSHNSLSLSTL--LPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGG 459
           D S  +L L  L   P   +     +L+  S   +           L  L+LS+N++   
Sbjct: 21  DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 80

Query: 460 IPNWIWNVGKDTLNHLNLSHNFLTGIELL---PWKNLRYLDLRSNSLKGSIPFLPPSLNF 516
                       L  LNLS N L     L       L  L L  NSL  +       ++ 
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

Query: 517 I 517
           I
Sbjct: 141 I 141

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 16/81 (19%), Positives = 21/81 (25%)

Query: 206 QNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSG 265
             L L+ N          N +           N            S    LD+S      
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215

Query: 266 HIPSTLSNLQQLRHLDLSNNK 286
                L NL++LR     N K
Sbjct: 216 LPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 9e-07
 Identities = 24/229 (10%), Positives = 55/229 (24%), Gaps = 10/229 (4%)

Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645
            +    ++++   +P  L        L     ++            +L+ + +  N    
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 646 PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN-------MY 698
            I   V         I     N    + P  +           +N+              
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 699 INYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHN 758
                +    I            +      + L+ N  Q             +     +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 759 KLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQ 807
            L  L        +    LD+S  ++     + L +L  L+  +    +
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 9/217 (4%)

Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL 633
            IP    +      L     +L      +      LE +++  N +     A + +    
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 634 QVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAE 693
              I      +            P L+ L +SN     +       + Q ++    ++  
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 694 GGNMYINYGNEYY------SAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP-EVVGK 746
              +  N                                  ++LS N     +P +V   
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 747 LNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK 783
            +    L+ S  ++  L  Y LENL +L +    + K
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 24/209 (11%), Positives = 51/209 (24%)

Query: 102 FPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV 161
             N   L   ++          S    L  +++S N  L +    + + +  L+E++   
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 162 LNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFP 221
            N++                  +          + +       L ++  + N +      
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLD 281
            V  S     + L           +              NN                 LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQ 310
           +S  +          NL +L      N +
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 29/224 (12%), Positives = 57/224 (25%), Gaps = 5/224 (2%)

Query: 118 QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTN 177
           +IP+++      + L         +                        +  +V S L  
Sbjct: 22  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 178 LSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGC 237
           L  +      N                   +  +  K+L  V    +    L  +     
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
                  + +G   +   L L+ N          +  Q        NN        +F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
            +    LD S  +++   S  +  L  L     S  +L   +P+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKL--RARSTYNL-KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 24/226 (10%), Positives = 52/226 (23%), Gaps = 11/226 (4%)

Query: 426 LSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGI 485
                  ++E P  L        L     ++R          G      ++ +       
Sbjct: 13  FLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70

Query: 486 ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSN 545
             +     +  ++R       +   P +   +      L     +         +     
Sbjct: 71  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130

Query: 546 NSLNGMIPPCLANSSLWF---------LDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596
                            F         L +  N         F+      +   ++N LE
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190

Query: 597 GSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
                     S   +LD+   RI+      L  L +L+     + +
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 32/231 (13%), Positives = 70/231 (30%), Gaps = 10/231 (4%)

Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383
           S        + +   IPS L  +     +     +L      + S   +L  + +S N++
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQ 443
              +E  +F+ L  L  + +   +  L        + P L  L +S+  I   PD  +  
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 444 HRLQILDLSDN-QIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS 502
              ++L    +      I    +         L L+ N +  I    +   +  +L  + 
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 503 LKGSIPFLP------PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS 547
                               + +S  ++         N+  +   +  N  
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 31/217 (14%), Positives = 59/217 (27%), Gaps = 5/217 (2%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
            IP+ L        L               S    L  +++S N     I     +    
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 302 SFLDFSNNQLNGPI--SSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
                     N       +   L +L  + +S   +          S     +D+++N  
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 360 TGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419
             +I  +    ++   + L  N                L  L+LS N+        V   
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 420 FPYLSMLSLSSCNISEFPDF-LRTQHRLQILDLSDNQ 455
                +L +S   I   P + L    +L+     + +
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 13/199 (6%)

Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
           +     NL    +  +V  +    + ++ +   N+ I       +  L  +  L L  N+
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 643 FHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
                          K       +      L +         +   +N     N  ++  
Sbjct: 80  LTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTG 762
                 +   K  ++ +   L    T+ L  N+    +P  +  L  L+ L  S N ++ 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192

Query: 763 LIPYSLENLTQLESLDLSS 781
           L   +L  L  L+ L+L S
Sbjct: 193 L--RALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 28/195 (14%), Positives = 61/195 (31%), Gaps = 20/195 (10%)

Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
             ++    +L   + +  +  T + L  +  +  +N+            L  ++ L  + 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-------------PLLESIDLR 355
           N+L      +  +    + +  +      ++                     L+    L 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 356 NNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLP 415
           +  L  +    I+ L  L  L   S   +   ++   A L  L  L LS N +   + L 
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI---SDLR 194

Query: 416 VNSSFPYLSMLSLSS 430
             +    L +L L S
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 22/194 (11%)

Query: 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSY 212
              E  +  L    ++  V      L+S+  +   N  ++    + I  LPN+  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 213 NK---------------NLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLD 257
           NK                        + SS      L   +   +  + +  L  L  L+
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 258 LSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISS 317
             Y   +     T+ +           +     I    A LT+L  L  S N ++     
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R 194

Query: 318 SVSRLHSLVTIYLS 331
           +++ L +L  + L 
Sbjct: 195 ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 19/223 (8%)

Query: 185 DLGNCGLQGSIPEN-IFRLPNLQNLILS--YNKNLTSVFPKVNWSSPLRFMDLYGCNFMG 241
            LG+  +    P   IF        I      K++T    +   +S +  +     +   
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIKS 60

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQL 301
                +  L  +T L L+ N  +         L  L++L                   + 
Sbjct: 61  VQG--IQYLPNVTKLFLNGNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKK 113

Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTG 361
                  +     I+  V           +    + T+ S L     L   D + + +  
Sbjct: 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV- 172

Query: 362 SISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLS 404
                ++ L  L +L LS N++S   +L   A LKNL  L+L 
Sbjct: 173 ----PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 30/175 (17%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 630 LSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNN 689
           L+ +  +I  ++     I         P +  L L+ N+ T     +   N + +     
Sbjct: 45  LNSIDQIIANNSD----IKSVQGIQYLPNVTKLFLNGNKLTD---IKPLANLKNLGWLFL 97

Query: 690 NSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNS 749
           +  +  ++      +   ++        ++  ++++     L     +     V+ +L  
Sbjct: 98  DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK 157

Query: 750 LKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLS 804
           L  L+   N+++ ++P  L  LT+L++L LS N ++ ++   L  L  L VL L 
Sbjct: 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 22/199 (11%), Positives = 59/199 (29%), Gaps = 12/199 (6%)

Query: 368 SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLS 427
                 I  +L   +++  V      EL ++  +  +++ +     +      P ++ L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGI---QYLPNVTKLF 74

Query: 428 LSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL 487
           L+   +++          L+ L                   K   +     +       L
Sbjct: 75  LNGNKLTDIKPL----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 488 LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS 547
           +    L  L L +N +         +        +    +I      ++ +  + LS N 
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNH 189

Query: 548 LNGMIPPCLANSSLWFLDM 566
           ++  +       +L  L++
Sbjct: 190 ISD-LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 15/213 (7%)

Query: 409 SLSTLLPVNSSFP--YLSMLSLSSCNISEFPDFLRTQ--HRLQILDLSDNQIRGGIPNWI 464
           +++   P+   F     +     +       D +     + +  +  +++ I       +
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI-----KSV 61

Query: 465 WNVGKDT-LNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNK 523
             +     +  L L+ N LT I+ L             +    +  L       S+S   
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121

Query: 524 LSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGS 583
                     ++  +  + L NN +  +              + + +   S     +  +
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLT---KLDTLSLEDNQISDIVPLAGLT 178

Query: 584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616
           +L  L L+ N +     L+      L+VL++ +
Sbjct: 179 KLQNLYLSKNHISDLRALA--GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 470 DTLNHLNLSHNFLT---GIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSG 526
           ++++ +  +++ +    GI+ LP  N+  L L  N L    P    +L  +       + 
Sbjct: 46  NSIDQIIANNSDIKSVQGIQYLP--NVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENK 101

Query: 527 EIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLT 586
              LS              ++    I   +    L  L +  N        +     +L 
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT--KLD 159

Query: 587 ILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640
            L+L DNQ+   VPL+    + L+ L +  N I  +    L  L  L VL L S
Sbjct: 160 TLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 31/311 (9%), Positives = 71/311 (22%), Gaps = 20/311 (6%)

Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSG----HIPSTLSNLQQLRHLDLSNNKF 287
           +D        S+ A L     +  + LS N         +   +++ + L   + S+   
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 288 TGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSP 347
                 I   L  L        +L+    S  +   +     + + S +  +      + 
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 348 LLESIDLRNNQLTGSISNSISELVNLID---LSLSSNNLSGNVELYMFAELKNLLGLDLS 404
            L                   +  N      +    N L            ++   L   
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 405 HNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWI 464
               +      +                +    +         +     +          
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 465 WNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFL--------PPSLNF 516
             +         +          L    L+ L L+ N ++               P L F
Sbjct: 252 DCLLSARGAAAVVDA-----FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 517 ISVSNNKLSGE 527
           + ++ N+ S E
Sbjct: 307 LELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 39/330 (11%), Positives = 84/330 (25%), Gaps = 17/330 (5%)

Query: 491 KNLRYLDLRSNSLKGSIPFLP--PSLNFISVSNNKLSGE----IPLSFCNMSSIFYVNLS 544
           K+L+   + +   K     L    S+  I +S N +  E    +  +  +   +     S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 545 NNS---LNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
           +     +   IP  L           +++    S            I  L+ +     + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLR 660
           L            +                  L+ +I   NR     +       F   R
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHR 186

Query: 661 ILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEME 720
           +L        G+ P          +               + +   SA+         + 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 721 KVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSL-----ENLTQLE 775
           ++      +   G            +   L+ L   +N++      +L     E +  L 
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSK-LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 776 SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQ 805
            L+L+ N+ + E                 +
Sbjct: 306 FLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 224 NWSSPLRFMDLYGCNFMGSIPASLGN------LSQLTYLDLSYNNFSGHIPSTL-----S 272
                LR + L  C       A++ +         L  L L YN        TL      
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 273 NLQQLRHLDLSNNKFTGQIPCI 294
            +  L  L+L+ N+F+ +   +
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVV 321

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 38/307 (12%), Positives = 83/307 (27%), Gaps = 12/307 (3%)

Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA-----NSSLWFLDMR 567
           SL   +++       +        S+  + LS N++       L+        L   +  
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 568 MNNFHGSIPQTFSKGSRLTILNLNDNQLEG-SVPLSLVNCSFLEVLDVGNNRINGTFPAW 626
                    +       L    L   +L    +  +    +  E L    ++       +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686
           L           +  R    +  +      P LR +    N         + + FQ+   
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGK 746
            +        +            L        ++   N FT +  S      +    + +
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 747 LNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS-----LNFLQVL 801
           L     L  +      +  +S      L++L L  N++  +    L +     +  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 802 NLSQNQL 808
            L+ N+ 
Sbjct: 308 ELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 40/318 (12%), Positives = 80/318 (25%), Gaps = 15/318 (4%)

Query: 72  SSLFSLPHLQILNLAFNDFNY---SYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSK 128
           + L     ++ + L+ N        ++S       +L     S   F+G++  EI    +
Sbjct: 25  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALR 83

Query: 129 LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGN 188
           L+   L    +L        A      E     L+       +      L       +  
Sbjct: 84  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 143

Query: 189 CGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLG 248
              + ++ +     P L+++I   N  L +   K    +      L+             
Sbjct: 144 ALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKM--VQNGIRP 200

Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
              +   L+         +     N                        L          
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS-----PLLESIDLRNNQLTGSI 363
             +    S        L T+ L YN +       L T      P L  ++L  N+     
Sbjct: 261 AAVVDAFSKL--ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEE 317

Query: 364 SNSISELVNLIDLSLSSN 381
            + + E+  +        
Sbjct: 318 DDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 49/311 (15%), Positives = 83/311 (26%), Gaps = 39/311 (12%)

Query: 372 NLIDLSLSSNNLSGNVELYMFAELKN---LLGLDLSHNSLS---LSTLLPVNSSFPYLSM 425
           ++   SL  + ++   E  +FA L     +  + LS N++       L    +S   L +
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 426 LSLSSCNISEFPD--------FLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNL 477
              S        D         L+   +   L           P     +      H  L
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 478 SHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCN--- 534
            H +L    L P    +                 P L  I    N+L       +     
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 535 -----------MSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGS 583
                       + I    + +  L G+             +   +    ++        
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 584 RLTILNLNDNQLEGSVPLSLVNC------SFLEVLDVGNNRINGTFPAWLGA-----LSE 632
            L  L LND  L      ++V+         L+ L +  N I       L       + +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 633 LQVLILRSNRF 643
           L  L L  NRF
Sbjct: 304 LLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 39/309 (12%), Positives = 89/309 (28%), Gaps = 29/309 (9%)

Query: 118 QIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTN 177
            + A +     +  + LSGN+        L   + +  +L+    + +            
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 178 LSSLTSLDLGNCGLQ---GSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDL 234
           L  L    L    L     S               LS +  L  ++   N   P     +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFS-GHIPSTLSNLQQLRHLDLSNNKFTGQIPC 293
                  ++     N   L  +    N    G +       Q  R L        G  P 
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 294 IFANLTQLSFLDFSN------------NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
              +L                      +  +  ++ ++    +L  + L+   L+    +
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 342 GLF------TSPLLESIDLRNNQLTGSISNSISE-----LVNLIDLSLSSNNLSGNVELY 390
            +        +  L+++ L+ N++      ++       + +L+ L L+ N  S   ++ 
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV- 320

Query: 391 MFAELKNLL 399
              E++ + 
Sbjct: 321 -VDEIREVF 328

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 245 ASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFL 304
           A   N  +   LDL        I +  + L Q   +D S+N+           L +L  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTL 68

Query: 305 DFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
             +NN++          L  L  + L+ NSL 
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
            R +DL G      I      L Q   +D S N            L++L+ L ++NN+  
Sbjct: 20  DRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRIC 76

Query: 289 GQIPCIFANLTQLSFLDFSNNQLNG-PISSSVSRLHSLVTIYLS---YNSLNGTIPSGLF 344
                +   L  L+ L  +NN L        ++ L SL  + +      +        ++
Sbjct: 77  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 136

Query: 345 TSPLLESIDLR 355
             P +  +D +
Sbjct: 137 KVPQVRVLDFQ 147

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 1/138 (0%)

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPA-SLGNLSQLTYLDLSYNNFSGHIPSTL 271
                     +  +  L  + +     +  +    L  L +L  L +  +      P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 272 SNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLS 331
               +L  L+LS N            L+    +   N          + R        + 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVP 136

Query: 332 YNSLNGTIPSGLFTSPLL 349
              L       L   P  
Sbjct: 137 EQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 4/135 (2%)

Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP-CIFANLTQLSFLDFSNN 309
              + L  + +         L   + L  L + N +    +       L +L  L    +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNS-IS 368
            L      +      L  + LS+N+   ++         L+ + L  N L  S +   + 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 369 ELVNLIDLSLSSNNL 383
                    +    L
Sbjct: 126 RWEEEGLGGVPEQKL 140

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 3/134 (2%)

Query: 242 SIPASLGNLSQLTYLDLSYNNFSGHIPS-TLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
                L     LT L +       H+    L  L +LR+L +  +      P  F    +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 301 LSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESI-DLRNNQL 359
           LS L+ S N L   +S    +  SL  + LS N L+ +           E +  +   +L
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

Query: 360 TGSISNSISELVNL 373
                  ++ + N 
Sbjct: 141 QCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 4/147 (2%)

Query: 492 NLRYLDLRSNSLKGSIPFLPPSLNFISV---SNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548
               L    +    S+  LP + N   +   +   L          +  +  + +  + L
Sbjct: 9   GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 549 NGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLS-LVNCS 607
             + P     +          N   S+     +G  L  L L+ N L  S  L  L    
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 608 FLEVLDVGNNRINGTFPAWLGALSELQ 634
              +  V   ++       L  +    
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 19/188 (10%)

Query: 153 NLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSY 212
            L E  + VL   +++  V    T+L  +T+L     G++ SI + +  L NL  +  S 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 71

Query: 213 NKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS 272
           N+       K         M+      +  +           + +   +       + L+
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 273 NLQQLRHLDLSNNKFTGQIPCI--------------FANLTQLSFLDFSNNQLNG-PISS 317
            L+   +     +  +G                    ANLT L  LD S+N+++   + +
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLA 191

Query: 318 SVSRLHSL 325
            ++ L SL
Sbjct: 192 KLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 30/197 (15%), Positives = 58/197 (29%), Gaps = 28/197 (14%)

Query: 100 TRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE 159
           T         L  ++ +  +    + L ++ +L         +D       V+ LN L +
Sbjct: 15  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQ 66

Query: 160 LVLNS----------------VDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLP 203
           +  ++                  +            +  +   G       I +      
Sbjct: 67  INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 126

Query: 204 NLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF 263
                 L  + N  S    ++  + L+ ++          P  L NL+ L  LD+S N  
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 184

Query: 264 SGHIPSTLSNLQQLRHL 280
           S    S L+ L  L  L
Sbjct: 185 SD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 28/203 (13%)

Query: 616 NNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPT 675
           +  IN  F     AL+E    +L        ++ +       ++  L         +   
Sbjct: 5   DTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSIDGV 58

Query: 676 RYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNK 735
            Y  N   +   NN   +   +                     +  + N+      +   
Sbjct: 59  EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 118

Query: 736 FQGRIPEVVGKLNSLKGLNFS-------------------HNKLTGLIPYSLENLTQLES 776
                 + +  LN L+  + +                    N++T L P  L NLT LE 
Sbjct: 119 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 176

Query: 777 LDLSSNKVAG-EIPWQLTSLNFL 798
           LD+SSNKV+   +  +LT+L  L
Sbjct: 177 LDISSNKVSDISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	920
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.96
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.2e-35  Score=317.07  Aligned_cols=284  Identities=30%  Similarity=0.449  Sum_probs=199.8

Q ss_pred             CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCCc--cccceEecCCC--CcEEEEECCCCCCccc--CCCCCCc
Q 048289            1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCC--SWDGVTCDMMT--GHVTGLDLSCSRLHGS--IPSDSSL   74 (920)
Q Consensus         1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c--~w~gv~c~~~~--~~v~~L~L~~~~l~~~--~~~~~~l   74 (920)
                      ||++||+++.+|.               .+++|..++|||  .|+||+|+..+  +||++|+|+++++.|.  +|+  ++
T Consensus        10 aLl~~k~~~~~~~---------------~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~--~l   72 (313)
T d1ogqa_          10 ALLQIKKDLGNPT---------------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SL   72 (313)
T ss_dssp             HHHHHHHHTTCCG---------------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GG
T ss_pred             HHHHHHHHCCCCC---------------cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh--HH
Confidence            7999999998763               689999889999  49999998643  4899999999999873  555  67


Q ss_pred             cCCCCCCEEECCC-CCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhc
Q 048289           75 FSLPHLQILNLAF-NDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQN  153 (920)
Q Consensus        75 ~~l~~L~~L~Ls~-~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~  153 (920)
                      .++++|++|+|++ |++.+. +|+.|+++++|++|+|++|++.+..+..+..+.+|+++++++|                
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N----------------  135 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN----------------  135 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS----------------
T ss_pred             hcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccc----------------
Confidence            7777777777765 566654 6777777777777777777777666666666666666666666                


Q ss_pred             CCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCC-CEEEccCCCCCCcCCC-CcCCCCCCCE
Q 048289          154 LNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNL-QNLILSYNKNLTSVFP-KVNWSSPLRF  231 (920)
Q Consensus       154 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-~~L~L~~n~~~~~~~~-~~~~l~~L~~  231 (920)
                                  .+.+.+|..+.+++.|+++++++|.+.+.+|..+..+..+ +.+++++| .+.+..+ .+..+ ....
T Consensus       136 ------------~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l-~~~~  201 (313)
T d1ogqa_         136 ------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANL-NLAF  201 (313)
T ss_dssp             ------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGC-CCSE
T ss_pred             ------------cccccCchhhccCcccceeeccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence                        3344566667777777777777777776777766666654 56666666 4554444 33333 2335


Q ss_pred             EEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCC
Q 048289          232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL  311 (920)
Q Consensus       232 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  311 (920)
                      +++..+...+.+|..+..+++++.++++++.+.+.+| .+..+++|+.|++++|++++.+|..|+++++|++|++++|++
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            6666666666777777777777777777777765443 466677777777777777777777777777777777777777


Q ss_pred             CCcccccccCCCcCceeeccCcc
Q 048289          312 NGPISSSVSRLHSLVTIYLSYNS  334 (920)
Q Consensus       312 ~~~~~~~l~~l~~L~~L~L~~n~  334 (920)
                      +|.+|. ++.+++|+.+++++|+
T Consensus       281 ~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         281 CGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccCCC-cccCCCCCHHHhCCCc
Confidence            766663 4566677777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=2.5e-31  Score=285.29  Aligned_cols=259  Identities=31%  Similarity=0.513  Sum_probs=186.3

Q ss_pred             CCceEEecCceecc--cCcccccCCCCcCeEeCCC-CcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEE
Q 048289          513 SLNFISVSNNKLSG--EIPLSFCNMSSIFYVNLSN-NSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILN  589 (920)
Q Consensus       513 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  589 (920)
                      .++.|++++|.+++  .+|..++++++|++|++++ |+++|.                       +|..|.++++|++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-----------------------iP~~i~~L~~L~~L~  107 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-----------------------IPPAIAKLTQLHYLY  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-----------------------CCGGGGGCTTCSEEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-----------------------cccccccccccchhh
Confidence            46666666666665  3555666666666666654 455544                       445555555555666


Q ss_pred             ccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCC-CcEEEccCCc
Q 048289          590 LNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK-LRILDLSNNE  668 (920)
Q Consensus       590 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~  668 (920)
                      |++|++.+..+..+..+..|+.+++++|++.+.+|..+.++++|+++++++|.+.+.+|...  ..+.. ++.+++++|+
T Consensus       108 Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSE
T ss_pred             hccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccc--cccccccccccccccc
Confidence            66665555555555555566666666666555556566666666666666666655555443  22333 3667777777


Q ss_pred             CcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccC
Q 048289          669 FTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLN  748 (920)
Q Consensus       669 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~  748 (920)
                      +++..|..+ .+                                           .....++++++.+.|.+|..++.++
T Consensus       186 l~~~~~~~~-~~-------------------------------------------l~~~~l~l~~~~~~~~~~~~~~~~~  221 (313)
T d1ogqa_         186 LTGKIPPTF-AN-------------------------------------------LNLAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             EEEECCGGG-GG-------------------------------------------CCCSEEECCSSEEEECCGGGCCTTS
T ss_pred             ccccccccc-cc-------------------------------------------ccccccccccccccccccccccccc
Confidence            777666432 11                                           1234688999999999999999999


Q ss_pred             CCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCCCCCCCCCCcccccC
Q 048289          749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQGKQFHTFSSDSYNG  828 (920)
Q Consensus       749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~  828 (920)
                      .++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|.+|+++++|++|||++|+|+|.||+.+.+..+....+.|
T Consensus       222 ~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence            99999999999998866 58889999999999999999999999999999999999999999999888888888888999


Q ss_pred             CcCCCCCCCCCCCC
Q 048289          829 NMGLCGFPLSEKCS  842 (920)
Q Consensus       829 n~~lcg~~~~~~c~  842 (920)
                      |+.+||.|++ .|.
T Consensus       301 N~~l~g~plp-~c~  313 (313)
T d1ogqa_         301 NKCLCGSPLP-ACT  313 (313)
T ss_dssp             SSEEESTTSS-CCC
T ss_pred             CccccCCCCC-CCC
Confidence            9999999875 673

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=5e-25  Score=243.41  Aligned_cols=317  Identities=25%  Similarity=0.304  Sum_probs=194.0

Q ss_pred             CCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCC-CCcccceEec
Q 048289          420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELL-PWKNLRYLDL  498 (920)
Q Consensus       420 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~L~~L~L  498 (920)
                      +++|++|++++|+++.+++ +.++++|++|++++|++.+..+  +.  .+++|+.++++++.+++.... ....+.....
T Consensus        65 L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~--l~--~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~  139 (384)
T d2omza2          65 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LA--NLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  139 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             CCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc--cc--cccccccccccccccccccccccccccccccc
Confidence            4444444444444444443 5555555555555555543222  22  455555555555555544332 2233444444


Q ss_pred             ccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCc
Q 048289          499 RSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQ  577 (920)
Q Consensus       499 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~  577 (920)
                      ..|.+..................  ........+...+.........|...  ......... ++.+++++|.+++..| 
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-  214 (384)
T d2omza2         140 SSNTISDISALSGLTSLQQLSFG--NQVTDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-  214 (384)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEE--ESCCCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             ccccccccccccccccccccccc--cccchhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc-
Confidence            44433322211111111111110  01111223334444444555555443  222233333 7777777777776544 


Q ss_pred             cccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCC
Q 048289          578 TFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP  657 (920)
Q Consensus       578 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  657 (920)
                       +..+++|+.|++++|+++.  +..+..+++|+.|++++|++++..+  +..+++|++|++++|++.+..+    ...++
T Consensus       215 -~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~----~~~~~  285 (384)
T d2omza2         215 -LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLT  285 (384)
T ss_dssp             -GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCT
T ss_pred             -ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc----ccccc
Confidence             3456678888888887764  2356777888888888888875443  6677888888888887765433    23467


Q ss_pred             CCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCC
Q 048289          658 KLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQ  737 (920)
Q Consensus       658 ~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~  737 (920)
                      .++.++++.|.+++...   +                                          ..++.++.|++++|+++
T Consensus       286 ~l~~l~~~~n~l~~~~~---~------------------------------------------~~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         286 ALTNLELNENQLEDISP---I------------------------------------------SNLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             TCSEEECCSSCCSCCGG---G------------------------------------------GGCTTCSEEECCSSCCS
T ss_pred             ccccccccccccccccc---c------------------------------------------chhcccCeEECCCCCCC
Confidence            78888888888775211   1                                          11456789999999999


Q ss_pred             CCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCC
Q 048289          738 GRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN  806 (920)
Q Consensus       738 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N  806 (920)
                      +..|  +..+++|++|++++|++++. | .++++++|++||+++|++++.+|  +.++++|++|++++|
T Consensus       321 ~l~~--l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         321 DISP--VSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCcc--cccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            7643  88899999999999999863 3 68999999999999999998776  899999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.2e-24  Score=238.13  Aligned_cols=191  Identities=24%  Similarity=0.291  Sum_probs=94.9

Q ss_pred             hhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC-CCCcccceEecccCcCCCCCCCCCCCCce
Q 048289          438 DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL-LPWKNLRYLDLRSNSLKGSIPFLPPSLNF  516 (920)
Q Consensus       438 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~L~~  516 (920)
                      .....+++++.+++++|.+++..|..    ..++|+++++++|.++.++. ..+++|+.+++++|.+++.          
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~~~----~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~----------  256 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITPLG----ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL----------  256 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGG----GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC----------
T ss_pred             cccccccccceeeccCCccCCCCccc----ccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC----------
Confidence            33445555666666666555443321    34556666666665555432 2234444444444444332          


Q ss_pred             EEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCcc
Q 048289          517 ISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQL  595 (920)
Q Consensus       517 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  595 (920)
                                 .+  +..+++|++|++++|++++..+  +.... ++.+++++|.+++.  ..+..+++++.|++++|++
T Consensus       257 -----------~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l  319 (384)
T d2omza2         257 -----------AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNI  319 (384)
T ss_dssp             -----------GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCC
T ss_pred             -----------Cc--ccccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCC
Confidence                       21  3444555555555555543221  22222 55555555555432  2344555566666666665


Q ss_pred             ccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCC
Q 048289          596 EGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNN  667 (920)
Q Consensus       596 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  667 (920)
                      ++..+  +..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|    ...+++|+.|+|++|
T Consensus       320 ~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~----l~~l~~L~~L~L~~N  383 (384)
T d2omza2         320 SDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCCE
T ss_pred             CCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh----hccCCCCCEeeCCCC
Confidence            54322  5555666666666666553 22 35556666666666666555433    134556666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.9e-23  Score=219.16  Aligned_cols=271  Identities=20%  Similarity=0.239  Sum_probs=209.5

Q ss_pred             ccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc
Q 048289          492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN  570 (920)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~  570 (920)
                      ..+.++.++++++..++..++++++|++++|+|+...+.+|.++++|++|++++|.+....|..+.... |+.|++++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            355667777777766555677888888888888877667888889999999999998877777787766 8889998888


Q ss_pred             ccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCccc--ccCchhhcCCCCCCEEEccCceeecccC
Q 048289          571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN--GTFPAWLGALSELQVLILRSNRFHGPIT  648 (920)
Q Consensus       571 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~  648 (920)
                      ++.. |..+  ...++.|++.+|.+.+..+..+.....++.++...|...  ...+..+..+++|+++++++|.+.. +|
T Consensus        91 l~~l-~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~  166 (305)
T d1xkua_          91 LKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP  166 (305)
T ss_dssp             CSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred             cCcC-ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cC
Confidence            8754 3322  346888888999888777777777888888888887543  3445677888899999999988764 23


Q ss_pred             CCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccE
Q 048289          649 YSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTT  728 (920)
Q Consensus       649 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  728 (920)
                      ..    .+++|+.|++++|..++..+..+ .+                                          ++.++.
T Consensus       167 ~~----~~~~L~~L~l~~n~~~~~~~~~~-~~------------------------------------------~~~l~~  199 (305)
T d1xkua_         167 QG----LPPSLTELHLDGNKITKVDAASL-KG------------------------------------------LNNLAK  199 (305)
T ss_dssp             SS----CCTTCSEEECTTSCCCEECTGGG-TT------------------------------------------CTTCCE
T ss_pred             cc----cCCccCEEECCCCcCCCCChhHh-hc------------------------------------------cccccc
Confidence            22    36789999999998887665332 11                                          345688


Q ss_pred             EEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCccc------ccCCCCCCeee
Q 048289          729 IDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQ------LTSLNFLQVLN  802 (920)
Q Consensus       729 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~------l~~l~~L~~L~  802 (920)
                      |++++|.+++..|..+.++++|++|+|++|+|+ .+|++|..+++|++|+|++|+|+...+..      +..+.+|+.|+
T Consensus       200 L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             cccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEE
Confidence            999999999888888999999999999999998 45888999999999999999998654433      34678899999


Q ss_pred             ccCCccc-CCCCC
Q 048289          803 LSQNQLV-GPIPQ  814 (920)
Q Consensus       803 ls~N~l~-g~iP~  814 (920)
                      +++|++. +++|.
T Consensus       279 L~~N~~~~~~~~~  291 (305)
T d1xkua_         279 LFSNPVQYWEIQP  291 (305)
T ss_dssp             CCSSSSCGGGSCG
T ss_pred             CCCCcCccCcCCH
Confidence            9999884 55654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-23  Score=219.27  Aligned_cols=267  Identities=21%  Similarity=0.207  Sum_probs=210.2

Q ss_pred             eEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeec-CCCccc
Q 048289          495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDM-RMNNFH  572 (920)
Q Consensus       495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L-~~n~l~  572 (920)
                      .+++++++++..+...++++++|+|++|+|+...+.+|.+++.|++|++++|++.+..+..+.... ++.+.. ..|.++
T Consensus        15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            345566666655445577889999999999887778899999999999999999887777776666 777665 466777


Q ss_pred             ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289          573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT  652 (920)
Q Consensus       573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  652 (920)
                      ...+..|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|+.|++++|++.+..+..+ 
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f-  173 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF-  173 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT-
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh-
Confidence            7778889999999999999999987778888889999999999999998778888899999999999999887666554 


Q ss_pred             cCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcC
Q 048289          653 RFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLS  732 (920)
Q Consensus       653 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  732 (920)
                       ..+++|+.+++++|++++..|.. +.+                                          ++++++||++
T Consensus       174 -~~l~~L~~l~l~~N~l~~i~~~~-f~~------------------------------------------l~~L~~L~l~  209 (284)
T d1ozna_         174 -RGLHSLDRLLLHQNRVAHVHPHA-FRD------------------------------------------LGRLMTLYLF  209 (284)
T ss_dssp             -TTCTTCCEEECCSSCCCEECTTT-TTT------------------------------------------CTTCCEEECC
T ss_pred             -ccccccchhhhhhccccccChhH-hhh------------------------------------------hhhccccccc
Confidence             46788999999999888766643 222                                          3567888999


Q ss_pred             CCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccC
Q 048289          733 GNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVG  810 (920)
Q Consensus       733 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  810 (920)
                      +|.+++..|..|+++++|+.|+|++|++...-+. ..-...++.+....+++.+..|..+.+   ....+++.++|+|
T Consensus       210 ~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             ccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            9999888888888899999999999988865432 122345677777888888888877664   4555677777776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=7.3e-22  Score=210.00  Aligned_cols=244  Identities=27%  Similarity=0.367  Sum_probs=157.9

Q ss_pred             ccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCC-cCCCCCCCCEEeCCCCCCccc
Q 048289           40 CSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISP-GFTRFPNLAHLNLSVSSFSGQ  118 (920)
Q Consensus        40 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~-~~~~l~~L~~L~Ls~n~~~~~  118 (920)
                      |.|++|.|+.            .++. .+|.  .+  .+.+++|+|++|+++.  +|+ .|.++++|++|++++|.+...
T Consensus        10 c~~~~~~C~~------------~~L~-~lP~--~l--~~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i   70 (305)
T d1xkua_          10 CHLRVVQCSD------------LGLE-KVPK--DL--PPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKI   70 (305)
T ss_dssp             EETTEEECTT------------SCCC-SCCC--SC--CTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred             ecCCEEEecC------------CCCC-ccCC--CC--CCCCCEEECcCCcCCC--cChhHhhcccccccccccccccccc
Confidence            6788888863            3333 5555  44  3689999999999876  554 689999999999999999977


Q ss_pred             CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCC--CCCC
Q 048289          119 IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQ--GSIP  196 (920)
Q Consensus       119 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~  196 (920)
                      .|..|.++++|++|++++|++..++..       ....++.|++..|.+....+..+.....++.++...+...  ...+
T Consensus        71 ~~~~f~~l~~L~~L~l~~n~l~~l~~~-------~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~  143 (305)
T d1xkua_          71 SPGAFAPLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  143 (305)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             chhhhhCCCccCEecccCCccCcCccc-------hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCc
Confidence            788899999999999999987765432       2456778888888777776666777777777777766433  2234


Q ss_pred             cccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCC
Q 048289          197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQ  276 (920)
Q Consensus       197 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  276 (920)
                      ..+..+++|+.+++++| .+... + ...+++|+.|++++|......+..+..++.+++|++++|.+++..+..+.++++
T Consensus       144 ~~~~~l~~L~~l~l~~n-~l~~l-~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADT-NITTI-P-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             TGGGGCTTCCEEECCSS-CCCSC-C-SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             cccccccccCccccccC-Ccccc-C-cccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            45566677777777666 33221 1 112345555555555555555555555555555555555555544555555555


Q ss_pred             CCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCC
Q 048289          277 LRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG  313 (920)
Q Consensus       277 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (920)
                      |++|+|++|+++ .+|..|..+++|++|++++|+++.
T Consensus       221 L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            555555555554 334445555555555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.3e-22  Score=208.51  Aligned_cols=227  Identities=22%  Similarity=0.252  Sum_probs=185.7

Q ss_pred             eEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECC-CCc
Q 048289          540 YVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVG-NNR  618 (920)
Q Consensus       540 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~-~N~  618 (920)
                      .++.+++.++ .+|..+. ..+++|+|++|+|+...+.+|.++++|+.|++++|++....+..+..++.++.++.. .|.
T Consensus        15 ~v~c~~~~L~-~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCC-ccCCCCC-CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            3456666665 4555432 237888888888887777888999999999999999988888888888888888765 566


Q ss_pred             ccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcce
Q 048289          619 INGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMY  698 (920)
Q Consensus       619 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~  698 (920)
                      ++...+..|.++++|++|++++|.+....+...  ...++|+.+++++|++++..+ ..+..                  
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~i~~-~~f~~------------------  151 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPD-DTFRD------------------  151 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT------------------
T ss_pred             cccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhccccccccCh-hHhcc------------------
Confidence            777778888999999999999998875544433  457789999999999985443 32221                  


Q ss_pred             eccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcccc
Q 048289          699 INYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD  778 (920)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  778 (920)
                                              .+.++.|++++|++++..|..|.++++|+.+++++|++++..|..|..+++|++||
T Consensus       152 ------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         152 ------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             ------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence                                    35578999999999988889999999999999999999999999999999999999


Q ss_pred             CCCCcccccCcccccCCCCCCeeeccCCcccCCCC
Q 048289          779 LSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIP  813 (920)
Q Consensus       779 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  813 (920)
                      +++|++++..|..|+.+++|++|++++|++.+.-+
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            99999999999999999999999999999987543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-20  Score=194.30  Aligned_cols=177  Identities=25%  Similarity=0.290  Sum_probs=115.6

Q ss_pred             cccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEE
Q 048289          584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILD  663 (920)
Q Consensus       584 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  663 (920)
                      ++++|+|++|+|++..+.+|.++++|++|+|++|+|+. +| .++.+++|++|++++|++.+..+ .  ...+++|+.|+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~~~-~--~~~l~~L~~L~  106 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSLPL-L--GQTLPALTVLD  106 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSCCC-C--TTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccccccc-c--ccccccccccc
Confidence            34555555555544444445555555555555555542 22 13445555555555555543211 1  13455666666


Q ss_pred             ccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhh
Q 048289          664 LSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEV  743 (920)
Q Consensus       664 Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~  743 (920)
                      +++|.+.+..+.. +.                                          .+..++.|++++|.+++..+..
T Consensus       107 l~~~~~~~~~~~~-~~------------------------------------------~l~~l~~L~l~~n~l~~l~~~~  143 (266)
T d1p9ag_         107 VSFNRLTSLPLGA-LR------------------------------------------GLGELQELYLKGNELKTLPPGL  143 (266)
T ss_dssp             CCSSCCCCCCSST-TT------------------------------------------TCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccccceeeccc-cc------------------------------------------cccccccccccccccceecccc
Confidence            6666655432211 11                                          1345678888888888777777


Q ss_pred             hhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc
Q 048289          744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV  809 (920)
Q Consensus       744 l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  809 (920)
                      +..++.|+.|++++|++++..+..|+.+++|++|||++|+|+ .+|.++..+++|+.|++++|++.
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            888889999999999999888888888999999999999988 78888888889999999998775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.3e-19  Score=183.80  Aligned_cols=202  Identities=22%  Similarity=0.180  Sum_probs=147.1

Q ss_pred             cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCC---CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCC
Q 048289          473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPF---LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLN  549 (920)
Q Consensus       473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (920)
                      .+++.+++.++.++..-.+++++|+|++|++++..+.   ..++|++|++++|+|+.. + .+..+++|++|++++|+++
T Consensus        13 ~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             CEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCS
T ss_pred             eEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccccccc
Confidence            3344444444443322223445555555544433221   245677777777777643 2 3567888888888888887


Q ss_pred             CcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhc
Q 048289          550 GMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLG  628 (920)
Q Consensus       550 ~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  628 (920)
                      +. +..+...+ |+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.|++++|++++..+..|.
T Consensus        91 ~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~  169 (266)
T d1p9ag_          91 SL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (266)
T ss_dssp             SC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             cc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccc
Confidence            54 44555555 88999999988888888888899999999999999987788888899999999999999988888899


Q ss_pred             CCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhh
Q 048289          629 ALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQN  680 (920)
Q Consensus       629 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  680 (920)
                      .+++|++|+|++|+++ .+|..+  ..+++|+.|+|++|++.+.....++..
T Consensus       170 ~l~~L~~L~Ls~N~L~-~lp~~~--~~~~~L~~L~L~~Np~~CdC~~~~l~~  218 (266)
T d1p9ag_         170 GLENLDTLLLQENSLY-TIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRR  218 (266)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTT--TTTCCCSEEECCSCCBCCSGGGHHHHH
T ss_pred             cccccceeecccCCCc-ccChhH--CCCCCCCEEEecCCCCCCCcchHHHHH
Confidence            9999999999999988 566655  567899999999999988665444433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.4e-15  Score=164.38  Aligned_cols=53  Identities=23%  Similarity=0.214  Sum_probs=27.7

Q ss_pred             CCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCC
Q 048289           79 HLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQL  140 (920)
Q Consensus        79 ~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~  140 (920)
                      ++++|||+++.++.  +|+.   .++|++|+|++|.++ .+|..+   .+|+.|++++|++.
T Consensus        39 ~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~   91 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK   91 (353)
T ss_dssp             TCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS
T ss_pred             CCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc
Confidence            34555555555543  4432   345666666666665 445432   35566666666544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.5e-16  Score=172.24  Aligned_cols=263  Identities=27%  Similarity=0.307  Sum_probs=128.9

Q ss_pred             ccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcc
Q 048289          492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNF  571 (920)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l  571 (920)
                      +|+.|++++|+++. ++..++.|++|++++|.+.. +|. +..+++|+.|++++|.+....+ ..  ..+..+.+.++..
T Consensus        79 ~L~~L~l~~n~l~~-l~~lp~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~-~~--~~l~~l~~~~~~~  152 (353)
T d1jl5a_          79 SLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPD-LP--PSLEFIAAGNNQL  152 (353)
T ss_dssp             TCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC
T ss_pred             hhhhhhhhhcccch-hhhhcccccccccccccccc-ccc-hhhhccceeecccccccccccc-cc--ccccchhhccccc
Confidence            44444444444432 12233455566666665553 332 3456666666666665543221 11  1144444444443


Q ss_pred             cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCc
Q 048289          572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSV  651 (920)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  651 (920)
                      .  ....+..++.++.|++++|.+... +..   ....+.+...++.+. .++ .+..++.|+.+++++|..... +.  
T Consensus       153 ~--~~~~l~~l~~l~~L~l~~n~~~~~-~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~-~~--  221 (353)
T d1jl5a_         153 E--ELPELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD--  221 (353)
T ss_dssp             S--SCCCCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS--
T ss_pred             c--ccccccccccceeccccccccccc-ccc---ccccccccccccccc-ccc-ccccccccccccccccccccc-cc--
Confidence            2  223345556666666666665422 211   122344555544443 222 234556666666666654321 11  


Q ss_pred             ccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEc
Q 048289          652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL  731 (920)
Q Consensus       652 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  731 (920)
                         ...++..+++.++.+......  ...+..........                     .+    ...........++
T Consensus       222 ---~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~---------------------~~----l~~l~~~~~~~~~  271 (353)
T d1jl5a_         222 ---LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIF---------------------SG----LSELPPNLYYLNA  271 (353)
T ss_dssp             ---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCC---------------------SE----ESCCCTTCCEEEC
T ss_pred             ---ccccccccccccccccccccc--cccccccccccccc---------------------cc----cccccchhccccc
Confidence               133455666666655432110  01110000000000                     00    0001123345566


Q ss_pred             CCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCC
Q 048289          732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGP  811 (920)
Q Consensus       732 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  811 (920)
                      ..+.+.+.    ...+++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|++++|+++ .
T Consensus       272 ~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~  338 (353)
T d1jl5a_         272 SSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-E  338 (353)
T ss_dssp             CSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-S
T ss_pred             ccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-C
Confidence            66666532    233567888888888887 45643   467888888888887 56643   456888888888877 5


Q ss_pred             CCC
Q 048289          812 IPQ  814 (920)
Q Consensus       812 iP~  814 (920)
                      +|.
T Consensus       339 lp~  341 (353)
T d1jl5a_         339 FPD  341 (353)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=4.7e-17  Score=163.98  Aligned_cols=204  Identities=19%  Similarity=0.291  Sum_probs=150.5

Q ss_pred             CeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289          539 FYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN  617 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (920)
                      ..++++.+++++.+  ...... |+.|++.+|.++..  ..+..+++|+.|++++|++++..|  +..+++|+.+++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            34556666666543  223333 77777777777743  347778888888888888876544  778888888888888


Q ss_pred             cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcc
Q 048289          618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNM  697 (920)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~  697 (920)
                      .++. + ..+.++++|+.+++++|...+..+.    ...+.++.+.++++.+....+.   .                  
T Consensus        96 ~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~---~------------------  148 (227)
T d1h6ua2          96 PLKN-V-SAIAGLQSIKTLDLTSTQITDVTPL----AGLSNLQVLYLDLNQITNISPL---A------------------  148 (227)
T ss_dssp             CCSC-C-GGGTTCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSCCCCCGGG---G------------------
T ss_pred             cccc-c-ccccccccccccccccccccccchh----ccccchhhhhchhhhhchhhhh---c------------------
Confidence            8773 3 3467888888888888877654332    3456788888888877643321   1                  


Q ss_pred             eeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccc
Q 048289          698 YINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESL  777 (920)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  777 (920)
                                              ..+.++.|++++|.+++..+  ++++++|+.|+|++|++++. | .++++++|++|
T Consensus       149 ------------------------~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L  200 (227)
T d1h6ua2         149 ------------------------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI-S-PLASLPNLIEV  200 (227)
T ss_dssp             ------------------------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEE
T ss_pred             ------------------------cccccccccccccccccchh--hcccccceecccCCCccCCC-h-hhcCCCCCCEE
Confidence                                    13567899999999986443  88999999999999999875 3 38899999999


Q ss_pred             cCCCCcccccCcccccCCCCCCeeeccC
Q 048289          778 DLSSNKVAGEIPWQLTSLNFLQVLNLSQ  805 (920)
Q Consensus       778 ~Ls~N~l~g~ip~~l~~l~~L~~L~ls~  805 (920)
                      +|++|++++..|  ++++++|++|++++
T Consensus       201 ~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             ECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            999999997544  88999999999973

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-18  Score=196.94  Aligned_cols=240  Identities=20%  Similarity=0.135  Sum_probs=147.4

Q ss_pred             cCCCCcCeEeCCCCcCCCc----Ccccccc--cccceeecCCCccccc----CCccccCCCcccEEEccCCcccc-----
Q 048289          533 CNMSSIFYVNLSNNSLNGM----IPPCLAN--SSLWFLDMRMNNFHGS----IPQTFSKGSRLTILNLNDNQLEG-----  597 (920)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~----~p~~~~~--~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~-----  597 (920)
                      .....++.++++++.....    ....+..  .....+++..+.+...    ....+...+.++.+++++|.+..     
T Consensus       166 ~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~  245 (460)
T d1z7xw1         166 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  245 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccch
Confidence            3445666777766654321    0011111  1145566666554421    11223456678888888887542     


Q ss_pred             ccCccccCCCCCcEEECCCCcccccC----chhhcCCCCCCEEEccCceeecccCCCc---ccCCCCCCcEEEccCCcCc
Q 048289          598 SVPLSLVNCSFLEVLDVGNNRINGTF----PAWLGALSELQVLILRSNRFHGPITYSV---TRFPFPKLRILDLSNNEFT  670 (920)
Q Consensus       598 ~~p~~l~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~~~~~---~~~~l~~L~~L~Ls~N~l~  670 (920)
                      ..+........++.+++++|.+....    ...+...+.++.+++++|.+.......+   .......|+.+++++|.++
T Consensus       246 ~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~  325 (460)
T d1z7xw1         246 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  325 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchh
Confidence            22334455678888888888876432    2345567888888888888754221111   0112457889999988876


Q ss_pred             CCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCC----chhhhh-
Q 048289          671 GVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGR----IPEVVG-  745 (920)
Q Consensus       671 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~----ip~~l~-  745 (920)
                      ...... +..                                      .......|++|||++|.++..    +++.+. 
T Consensus       326 ~~~~~~-l~~--------------------------------------~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~  366 (460)
T d1z7xw1         326 AACCSH-FSS--------------------------------------VLAQNRFLLELQISNNRLEDAGVRELCQGLGQ  366 (460)
T ss_dssp             GGGHHH-HHH--------------------------------------HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             hhhhhh-ccc--------------------------------------ccccccchhhhheeeecccCcccchhhhhhhc
Confidence            432211 111                                      111235689999999998753    344443 


Q ss_pred             ccCCCceEeccCccccCC----cCcccccccCCccccCCCCcccccCcccc----c-CCCCCCeeeccCCcccCC
Q 048289          746 KLNSLKGLNFSHNKLTGL----IPYSLENLTQLESLDLSSNKVAGEIPWQL----T-SLNFLQVLNLSQNQLVGP  811 (920)
Q Consensus       746 ~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l----~-~l~~L~~L~ls~N~l~g~  811 (920)
                      ..+.|++|+|++|.|+..    +++.+...++|++|||++|+++......+    . +...|+.|++++|++..+
T Consensus       367 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             ccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            467799999999999753    45566777999999999999986544333    2 345799999999987643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.8e-19  Score=199.66  Aligned_cols=114  Identities=25%  Similarity=0.310  Sum_probs=51.7

Q ss_pred             cEEEEECCCCCCcccC-CCCCCccCCCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCCCCccc----CCcccc
Q 048289           53 HVTGLDLSCSRLHGSI-PSDSSLFSLPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVSSFSGQ----IPAEIS  124 (920)
Q Consensus        53 ~v~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~  124 (920)
                      .+++||++++.+.+.- ..  -+..++++++|+|++|.++..   .+...+..+++|++|+|++|.+++.    +...+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~--l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAE--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHH--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHH--HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            4566666666654310 11  133455556666666655421   1223344555555555555555321    111111


Q ss_pred             -CCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCC
Q 048289          125 -HLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMS  168 (920)
Q Consensus       125 -~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~  168 (920)
                       ...+|++|++++|.+...+...+...+..+++|++|++++|.++
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence             12345555555554443333333444444455555555554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.3e-17  Score=164.09  Aligned_cols=222  Identities=14%  Similarity=0.074  Sum_probs=157.0

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCcccccc-CccccCCCCCcEEECC-C
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV-PLSLVNCSFLEVLDVG-N  616 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~-~  616 (920)
                      +.++.++..++ .+|+.+. ..+++|++++|+++...+..|.++++|++|++++|.+...+ +.+|.+++.++++++. .
T Consensus        11 ~~i~c~~~~l~-~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCC-CcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            56677776666 4555442 23888888888888777778888999999999999887644 4578888999988875 4


Q ss_pred             CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289          617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN  696 (920)
Q Consensus       617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  696 (920)
                      |.+....+..|.++++|+++++++|.+....+... ...+..+..+...++.+... +...+.+                
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~-~~~l~~l~~~~~~n~~l~~i-~~~~~~~----------------  150 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTI-ERNSFVG----------------  150 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTT-TCBSSCEEEEEESCTTCCEE-CTTSSTT----------------
T ss_pred             ccccccccccccccccccccccchhhhcccccccc-cccccccccccccccccccc-ccccccc----------------
Confidence            67877778888899999999999988864332221 12345555555566655432 2111111                


Q ss_pred             ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCce-EeccCccccCCcCcccccccCCc
Q 048289          697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKG-LNFSHNKLTGLIPYSLENLTQLE  775 (920)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~-L~Ls~N~l~~~ip~~~~~l~~L~  775 (920)
                                               ....++.|++++|+++...+..+ ...+++. +++++|+++...+..|.++++|+
T Consensus       151 -------------------------~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~  204 (242)
T d1xwdc1         151 -------------------------LSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPV  204 (242)
T ss_dssp             -------------------------SBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCS
T ss_pred             -------------------------ccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCC
Confidence                                     12356789999999985444444 4455544 56788889876677789999999


Q ss_pred             cccCCCCcccccCcccccCCCCCCeeeccCC
Q 048289          776 SLDLSSNKVAGEIPWQLTSLNFLQVLNLSQN  806 (920)
Q Consensus       776 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N  806 (920)
                      +|||++|+|+...+..|.+++.|+++++.+.
T Consensus       205 ~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         205 ILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             EEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             EEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            9999999999766777888888888877543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=8.5e-17  Score=157.15  Aligned_cols=174  Identities=21%  Similarity=0.249  Sum_probs=134.6

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceeccc-CcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGE-IPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNF  571 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l  571 (920)
                      +.+++++++++..+...++++++|+|++|+|++. .+..|.++++|+.|++++|.+.+..+..+.... |++|++++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            4566777777765555677888899999998764 466788899999999999999988888887777 99999999999


Q ss_pred             cccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCch-hhcCCCCCCEEEccCceeecccCCC
Q 048289          572 HGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA-WLGALSELQVLILRSNRFHGPITYS  650 (920)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~  650 (920)
                      +...+.+|.++++|++|+|++|+|++..|++|..+++|++|+|++|.+...... ++.  ..++.+.+..+.+....|..
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCChh
Confidence            988888899999999999999999988888899999999999999988754332 222  22445566677776655543


Q ss_pred             cccCCCCCCcEEEccCCcCcCCCc
Q 048289          651 VTRFPFPKLRILDLSNNEFTGVLP  674 (920)
Q Consensus       651 ~~~~~l~~L~~L~Ls~N~l~~~~p  674 (920)
                           +..++.+|++.|.+.+.-+
T Consensus       169 -----l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         169 -----VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             -----TTTSBGGGSCTTTCCCCCC
T ss_pred             -----hcCCEeeecCHhhCcCCCC
Confidence                 4566777888888876544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4.1e-16  Score=154.53  Aligned_cols=165  Identities=22%  Similarity=0.330  Sum_probs=111.2

Q ss_pred             CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289          582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI  661 (920)
Q Consensus       582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  661 (920)
                      +.+|+.|++++|.++...  .+..+++|++|++++|++++..  .++.+++|++|++++|++++. +   ....+++|+.
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~---~l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S---SLKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G---GGTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c---cccccccccc
Confidence            445666666666665322  3556666666666666666432  245666666777766666542 1   1234667777


Q ss_pred             EEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch
Q 048289          662 LDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP  741 (920)
Q Consensus       662 L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip  741 (920)
                      |++++|.+.. ++ . +.                                          .++.++.+++++|.+++.  
T Consensus       117 L~l~~~~~~~-~~-~-l~------------------------------------------~l~~l~~l~~~~n~l~~~--  149 (210)
T d1h6ta2         117 LSLEHNGISD-IN-G-LV------------------------------------------HLPQLESLYLGNNKITDI--  149 (210)
T ss_dssp             EECTTSCCCC-CG-G-GG------------------------------------------GCTTCCEEECCSSCCCCC--
T ss_pred             cccccccccc-cc-c-cc------------------------------------------cccccccccccccccccc--
Confidence            7777776653 11 1 11                                          134567888888888753  


Q ss_pred             hhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccC
Q 048289          742 EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQ  805 (920)
Q Consensus       742 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~  805 (920)
                      ..++.+++|+.+++++|++++..  .++++++|++|+|++|+++. +| .++++++|++|++++
T Consensus       150 ~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         150 TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            34677889999999999998753  38889999999999999885 55 588999999999864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=4.3e-16  Score=152.02  Aligned_cols=135  Identities=23%  Similarity=0.242  Sum_probs=99.3

Q ss_pred             CeEeCCCCcCCCcCcccccccccceeecCCCccccc-CCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289          539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGS-IPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN  617 (920)
Q Consensus       539 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (920)
                      ++++.++++++ .+|..+. ..+++|+|++|+|++. .+..|..+++|+.|+|++|.+.+..+..|..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcC-ccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            45677777776 3554432 2377777777777653 3566778888888888888888777888888888888888888


Q ss_pred             cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHH
Q 048289          618 RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRY  677 (920)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  677 (920)
                      +++...|..|.++++|++|+|++|++++..+..+  ..+++|++|+|++|++.+..+..+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccchHH
Confidence            8887777788888888888888888877665554  456788888888888876655443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=155.35  Aligned_cols=223  Identities=18%  Similarity=0.129  Sum_probs=130.5

Q ss_pred             ceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccc
Q 048289          494 RYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHG  573 (920)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~  573 (920)
                      +.+++++..++..++..++++++|++++|+|+...+.+|.++++|++|++++|.+...++.                   
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~-------------------   71 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-------------------   71 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS-------------------
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec-------------------
Confidence            4566666666644444566788888888888766666788888888888888877654332                   


Q ss_pred             cCCccccCCCcccEEEccC-CccccccCccccCCCCCcEEECCCCcccccCch-hhcCCCCCCEEEccCceeecccCCCc
Q 048289          574 SIPQTFSKGSRLTILNLND-NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPA-WLGALSELQVLILRSNRFHGPITYSV  651 (920)
Q Consensus       574 ~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~  651 (920)
                         ..|..++.++++.+.. |++....+..|.++++|++|++++|++....+. .+..+..+..+...++.+....+..+
T Consensus        72 ---~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~  148 (242)
T d1xwdc1          72 ---DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF  148 (242)
T ss_dssp             ---SSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS
T ss_pred             ---cccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccc
Confidence               2333344444444332 334434444444444455555544444422111 12233334444444444333222221


Q ss_pred             ccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEc
Q 048289          652 TRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL  731 (920)
Q Consensus       652 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  731 (920)
                      .. ....++.+++++|+++.. +...+..                                          ....+.+++
T Consensus       149 ~~-~~~~l~~L~l~~n~l~~i-~~~~~~~------------------------------------------~~l~~~~~l  184 (242)
T d1xwdc1         149 VG-LSFESVILWLNKNGIQEI-HNCAFNG------------------------------------------TQLDELNLS  184 (242)
T ss_dssp             TT-SBSSCEEEECCSSCCCEE-CTTTTTT------------------------------------------CCEEEEECT
T ss_pred             cc-ccccceeeeccccccccc-ccccccc------------------------------------------hhhhccccc
Confidence            10 123566777777777643 2221110                                          112344567


Q ss_pred             CCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCC
Q 048289          732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN  782 (920)
Q Consensus       732 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N  782 (920)
                      ++|+++...+..|.++++|++|+|++|+|+...+..|.++++|+.+++.+.
T Consensus       185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             cccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            888888655567899999999999999999777778999999999887543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=6.9e-15  Score=147.80  Aligned_cols=74  Identities=26%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             EeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEcc
Q 048289          108 LNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLG  187 (920)
Q Consensus       108 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls  187 (920)
                      ++++.+.+++..  .+..+.+|++|++++|.+.+++      .+.++++|++|++++|.+++..+  +..+++|++++++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~------~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE------GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcch------hHhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            444444444322  2344555666666666544321      13344444444444444433221  3444444444444


Q ss_pred             CCcC
Q 048289          188 NCGL  191 (920)
Q Consensus       188 ~n~l  191 (920)
                      +|.+
T Consensus        94 ~n~~   97 (227)
T d1h6ua2          94 GNPL   97 (227)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            4433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.7e-15  Score=148.67  Aligned_cols=161  Identities=31%  Similarity=0.424  Sum_probs=93.0

Q ss_pred             CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289          582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI  661 (920)
Q Consensus       582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  661 (920)
                      +.+++.|++++|.++. + ..+..+++|++|++++|++++..|  ++++++|++|++++|.+....+    ...+++|+.
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~----l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCSE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc----ccccccccc
Confidence            3455555555555553 2 234555666666666666654322  5556666666666665543211    134556666


Q ss_pred             EEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch
Q 048289          662 LDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP  741 (920)
Q Consensus       662 L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip  741 (920)
                      |++++|......+   +.                                          .++.|+.|++++|.+.. +|
T Consensus       111 L~l~~~~~~~~~~---~~------------------------------------------~l~~L~~L~l~~n~l~~-~~  144 (199)
T d2omxa2         111 LTLFNNQITDIDP---LK------------------------------------------NLTNLNRLELSSNTISD-IS  144 (199)
T ss_dssp             EECCSSCCCCCGG---GT------------------------------------------TCTTCSEEECCSSCCCC-CG
T ss_pred             ccccccccccccc---cc------------------------------------------hhhhhHHhhhhhhhhcc-cc
Confidence            6666665553211   11                                          13456677777777653 33


Q ss_pred             hhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCee
Q 048289          742 EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVL  801 (920)
Q Consensus       742 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  801 (920)
                       .+..+++|+.|++++|++++..  .++++++|++|++++|+++. +| .++++++|+.|
T Consensus       145 -~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         145 -ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             -GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             -cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence             4667777777777777777642  36777777777777777765 33 46667776654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.9e-15  Score=149.60  Aligned_cols=180  Identities=24%  Similarity=0.286  Sum_probs=130.4

Q ss_pred             EeCCCCcCCCcCccccccc-ccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcc
Q 048289          541 VNLSNNSLNGMIPPCLANS-SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRI  619 (920)
Q Consensus       541 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  619 (920)
                      ..+..+.+++.++.  ... +++.|++++|.++...  .+..+++|++|++++|++++..  .+..+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            34555555544432  122 2777777777776543  3667888888888888888644  367788888888888888


Q ss_pred             cccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCccee
Q 048289          620 NGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYI  699 (920)
Q Consensus       620 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~  699 (920)
                      ++ +| .+..+++|+.|++++|.+....  .  ...++.++.+++++|.+++..+   ..                    
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~~~~--~--l~~l~~l~~l~~~~n~l~~~~~---~~--------------------  153 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGISDIN--G--LVHLPQLESLYLGNNKITDITV---LS--------------------  153 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCCG--G--GGGCTTCCEEECCSSCCCCCGG---GG--------------------
T ss_pred             cc-cc-cccccccccccccccccccccc--c--cccccccccccccccccccccc---cc--------------------
Confidence            74 33 4778888889998888775421  1  2356788999999998875321   11                    


Q ss_pred             ccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccC
Q 048289          700 NYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDL  779 (920)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~L  779 (920)
                                            .++.|+.+++++|++++. +. ++++++|+.|+|++|+++. +| .+.++++|++|+|
T Consensus       154 ----------------------~l~~L~~l~l~~n~l~~i-~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         154 ----------------------RLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             ----------------------GCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             ----------------------cccccccccccccccccc-cc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEc
Confidence                                  145678999999999864 33 8899999999999999986 44 5899999999998


Q ss_pred             CC
Q 048289          780 SS  781 (920)
Q Consensus       780 s~  781 (920)
                      ++
T Consensus       208 s~  209 (210)
T d1h6ta2         208 FS  209 (210)
T ss_dssp             EE
T ss_pred             cC
Confidence            74

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-15  Score=158.19  Aligned_cols=182  Identities=21%  Similarity=0.262  Sum_probs=98.1

Q ss_pred             CCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCc-CCCC-CCcccCCC
Q 048289          125 HLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCG-LQGS-IPENIFRL  202 (920)
Q Consensus       125 ~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l  202 (920)
                      ...+|++||+++|.+.   ...+...+.++++|++|++++|.+++..+..++++++|++|++++|. +++. +..-...+
T Consensus        44 ~~~~L~~LdLs~~~i~---~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          44 SPFRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCBCCCEEECTTCEEC---HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEECCCCccC---HHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            3456666776666432   24555666667777777777777666666667777777777777753 3311 11112346


Q ss_pred             CCCCEEEccCCCCCCcC-CC-Cc-CCCCCCCEEEccCCc--Cccc-ccccccCCCCCCEEeCcCC-cCCccCcccccCCC
Q 048289          203 PNLQNLILSYNKNLTSV-FP-KV-NWSSPLRFMDLYGCN--FMGS-IPASLGNLSQLTYLDLSYN-NFSGHIPSTLSNLQ  275 (920)
Q Consensus       203 ~~L~~L~L~~n~~~~~~-~~-~~-~~l~~L~~L~L~~n~--~~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~  275 (920)
                      ++|++|++++|..++.. +. .+ ..+++|+.|+++++.  ++.. +...+.++++|++|++++| .+++.....+..++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            67777777766333321 11 11 123455555555432  2211 2222344566666666654 34444445555666


Q ss_pred             CCCEEEccCC-cCcccchhhhhcCCCCCEEECcCC
Q 048289          276 QLRHLDLSNN-KFTGQIPCIFANLTQLSFLDFSNN  309 (920)
Q Consensus       276 ~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n  309 (920)
                      +|++|++++| .+++.....++++++|++|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6666666664 344444444555666666666555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=9.4e-14  Score=135.98  Aligned_cols=164  Identities=30%  Similarity=0.406  Sum_probs=73.1

Q ss_pred             EEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEc
Q 048289          107 HLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDL  186 (920)
Q Consensus       107 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L  186 (920)
                      .+.++.+.+++.++  ...+.++++|++++|.+.+++      .++.+++|++|++++|.+++..+  ++++++|++|++
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l~------~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l   91 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSID------GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM   91 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCcc------ccccCCCcCcCccccccccCccc--ccCCcccccccc
Confidence            34455555554332  234566777777777654432      13344455555555554443222  444444444444


Q ss_pred             cCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCcc
Q 048289          187 GNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGH  266 (920)
Q Consensus       187 s~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  266 (920)
                      ++|.+. .++ .+..++.|+.|+++++                        .....  ..+..+++|+.|++++|.+.. 
T Consensus        92 ~~n~~~-~~~-~l~~l~~L~~L~l~~~------------------------~~~~~--~~~~~l~~L~~L~l~~n~l~~-  142 (199)
T d2omxa2          92 NNNQIA-DIT-PLANLTNLTGLTLFNN------------------------QITDI--DPLKNLTNLNRLELSSNTISD-  142 (199)
T ss_dssp             CSSCCC-CCG-GGTTCTTCSEEECCSS------------------------CCCCC--GGGTTCTTCSEEECCSSCCCC-
T ss_pred             cccccc-ccc-cccccccccccccccc------------------------ccccc--cccchhhhhHHhhhhhhhhcc-
Confidence            444433 111 2334444444444333                        33221  123444445555555444432 


Q ss_pred             CcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289          267 IPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN  312 (920)
Q Consensus       267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (920)
                      + ..+..+++|++|++.+|++++..  .++++++|++|++++|+++
T Consensus       143 ~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         143 I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            1 23444445555555554444321  2444444555555544444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.1e-15  Score=153.96  Aligned_cols=216  Identities=20%  Similarity=0.208  Sum_probs=121.5

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCC
Q 048289           76 SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLN  155 (920)
Q Consensus        76 ~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~  155 (920)
                      ....|++||++++.++...+...+.++++|++|+|+++.+++..+..++++++|++|++++|..  +.+.++......++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~--itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG--FSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS--CCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccc--ccccccchhhHHHH
Confidence            4456677777766655443444456677777777777766666666666677777777776522  23344555556666


Q ss_pred             CCCEEEcCCCC-CCCCc-chhccC-CCCCCEEEccCCc--CCCC-CCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCC
Q 048289          156 ELQELVLNSVD-MSYEV-PSFLTN-LSSLTSLDLGNCG--LQGS-IPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL  229 (920)
Q Consensus       156 ~L~~L~L~~~~-~~~~~-~~~l~~-l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  229 (920)
                      +|++|++++|. ++... ...+.. .++|+.|+++++.  ++.. +.....                        .+++|
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~------------------------~~~~L  177 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR------------------------RCPNL  177 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH------------------------HCTTC
T ss_pred             hccccccccccccccccchhhhcccccccchhhhccccccccccccccccc------------------------ccccc
Confidence            66666666653 32221 122222 3456666655432  1111 111112                        34445


Q ss_pred             CEEEccCC-cCcccccccccCCCCCCEEeCcCC-cCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECc
Q 048289          230 RFMDLYGC-NFMGSIPASLGNLSQLTYLDLSYN-NFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFS  307 (920)
Q Consensus       230 ~~L~L~~n-~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  307 (920)
                      ++|++++| .+++.....+.++++|++|++++| .+++.....++++++|++|+++++.-.+.++.....+++|+   +.
T Consensus       178 ~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~  254 (284)
T d2astb2         178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---IN  254 (284)
T ss_dssp             SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ES
T ss_pred             cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---cc
Confidence            55555543 244455566777888888888874 56655556677888888888888733333344344566665   35


Q ss_pred             CCCCCCccccccc
Q 048289          308 NNQLNGPISSSVS  320 (920)
Q Consensus       308 ~n~l~~~~~~~l~  320 (920)
                      .++++...+..++
T Consensus       255 ~~~ls~~~~~~~~  267 (284)
T d2astb2         255 CSHFTTIARPTIG  267 (284)
T ss_dssp             CCCSCCTTCSSCS
T ss_pred             CccCCCCCCCccC
Confidence            5566554444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=8.9e-14  Score=149.30  Aligned_cols=245  Identities=17%  Similarity=0.173  Sum_probs=130.1

Q ss_pred             CccCCCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCCCCcc---c-------CCccccCCCCCCEEEcCCCCC
Q 048289           73 SLFSLPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVSSFSG---Q-------IPAEISHLSKLVSLDLSGNSQ  139 (920)
Q Consensus        73 ~l~~l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~---~-------~p~~l~~l~~L~~L~Ls~n~~  139 (920)
                      ++.....|+.|+|++|.+...   .+...+...++|+.|+++++....   .       +...+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            455677788888888776442   123346677888888887765431   1       123345677888888888877


Q ss_pred             CCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchh-------------ccCCCCCCEEEccCCcCCCC----CCcccCCC
Q 048289          140 LGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSF-------------LTNLSSLTSLDLGNCGLQGS----IPENIFRL  202 (920)
Q Consensus       140 ~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-------------l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l  202 (920)
                      .......+...+..+++|++|++++|.+.......             ....+.|+.+++++|.+...    +...+..+
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            66555566677777888888888887764322111             12345667777766665422    11223345


Q ss_pred             CCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCcc----CcccccCCCCCC
Q 048289          203 PNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGH----IPSTLSNLQQLR  278 (920)
Q Consensus       203 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~  278 (920)
                      +.|++|++++| .+...-                  +...+...+..+++|++|++++|.++..    +...+..+++|+
T Consensus       186 ~~L~~L~L~~n-~i~~~g------------------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         186 RLLHTVKMVQN-GIRPEG------------------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             TTCCEEECCSS-CCCHHH------------------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             hhhcccccccc-cccccc------------------cccchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            55666666555 222110                  0001222344445555555555554321    223344555555


Q ss_pred             EEEccCCcCcccch----hhhhc--CCCCCEEECcCCCCCCcc----ccccc-CCCcCceeeccCcccc
Q 048289          279 HLDLSNNKFTGQIP----CIFAN--LTQLSFLDFSNNQLNGPI----SSSVS-RLHSLVTIYLSYNSLN  336 (920)
Q Consensus       279 ~L~L~~n~l~~~~p----~~l~~--l~~L~~L~L~~n~l~~~~----~~~l~-~l~~L~~L~L~~n~l~  336 (920)
                      +|++++|.+++.-.    ..+..  .+.|++|++++|.+....    ...+. ++++|++|++++|.+.
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            55555555543211    12222  234556666665554321    12221 3455666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=1.7e-13  Score=147.10  Aligned_cols=41  Identities=12%  Similarity=0.093  Sum_probs=23.7

Q ss_pred             cCCCCCCCCEEeCCCCCCccc----CCccccCCCCCCEEEcCCCC
Q 048289           98 GFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLSGNS  138 (920)
Q Consensus        98 ~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~  138 (920)
                      .+.....|+.|+|++|.+...    +...+...++|+.|+++++.
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            345566677777777665432    22344556666666666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=5.4e-12  Score=112.07  Aligned_cols=101  Identities=28%  Similarity=0.354  Sum_probs=45.1

Q ss_pred             EEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEE
Q 048289           82 ILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELV  161 (920)
Q Consensus        82 ~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~  161 (920)
                      +|+|++|+++.  ++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.+..++      .+.++++|++|+
T Consensus         2 ~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~   71 (124)
T d1dcea3           2 VLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD------GVANLPRLQELL   71 (124)
T ss_dssp             EEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEEE
T ss_pred             EEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC------ccccccccCeEE
Confidence            44444444432  22 2444444444444444444 33444444444444444444443321      123334444444


Q ss_pred             cCCCCCCCCc-chhccCCCCCCEEEccCCcCC
Q 048289          162 LNSVDMSYEV-PSFLTNLSSLTSLDLGNCGLQ  192 (920)
Q Consensus       162 L~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~  192 (920)
                      +++|.++... ...+..+++|++|++++|.+.
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            4444443222 234555566666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.6e-12  Score=118.53  Aligned_cols=87  Identities=25%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             ccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCc
Q 048289          247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLV  326 (920)
Q Consensus       247 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  326 (920)
                      +.++.++++|++++|.|+. ++..+..+++|+.|++++|.++. ++ .|..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            3444555555555555553 34444455555555555555552 22 244455555555555555443333333444444


Q ss_pred             eeeccCcccc
Q 048289          327 TIYLSYNSLN  336 (920)
Q Consensus       327 ~L~L~~n~l~  336 (920)
                      +|++++|++.
T Consensus        91 ~L~L~~N~i~  100 (162)
T d1a9na_          91 ELILTNNSLV  100 (162)
T ss_dssp             EEECCSCCCC
T ss_pred             cceecccccc
Confidence            4444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.2e-12  Score=119.59  Aligned_cols=86  Identities=23%  Similarity=0.190  Sum_probs=39.3

Q ss_pred             CCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCE
Q 048289          224 NWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF  303 (920)
Q Consensus       224 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  303 (920)
                      .+..++++|+|++|.++.. +..+..+++|+.|++++|.++..  +.+..+++|++|++++|+++...+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3444445555555544432 33334444555555555544422  22444455555555555544333333344455555


Q ss_pred             EECcCCCCC
Q 048289          304 LDFSNNQLN  312 (920)
Q Consensus       304 L~L~~n~l~  312 (920)
                      |++++|++.
T Consensus        92 L~L~~N~i~  100 (162)
T d1a9na_          92 LILTNNSLV  100 (162)
T ss_dssp             EECCSCCCC
T ss_pred             ceecccccc
Confidence            555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=3.3e-11  Score=106.88  Aligned_cols=102  Identities=27%  Similarity=0.399  Sum_probs=53.5

Q ss_pred             CEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCC
Q 048289          278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNN  357 (920)
Q Consensus       278 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  357 (920)
                      |+|++++|+++ .++ .+..+++|++|++++|+++. +|..+..+++|++|++++|.++ .+| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            35666666665 222 25566666666666666653 3444555566666666666554 222 3455555555555555


Q ss_pred             CCCCCc-hhhhhcCCCCCEEEccCCcCC
Q 048289          358 QLTGSI-SNSISELVNLIDLSLSSNNLS  384 (920)
Q Consensus       358 ~l~~~~-~~~l~~l~~L~~L~L~~n~l~  384 (920)
                      +++... ...+..+++|+.|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554322 133444555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.5e-10  Score=104.71  Aligned_cols=116  Identities=18%  Similarity=0.081  Sum_probs=75.9

Q ss_pred             ceeecCCCcccccCCccccCCCcccEEEccCC-ccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccC
Q 048289          562 WFLDMRMNNFHGSIPQTFSKGSRLTILNLNDN-QLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS  640 (920)
Q Consensus       562 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  640 (920)
                      +.++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+|+...+..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34445554444 23455666677777777655 47666666777777777777777777776677777777777777777


Q ss_pred             ceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhh
Q 048289          641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNF  681 (920)
Q Consensus       641 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l  681 (920)
                      |+++...+..+   ...+|+.|+|++|++.+..-..++..+
T Consensus        90 N~l~~l~~~~~---~~~~l~~L~L~~Np~~C~C~~~~l~~~  127 (156)
T d2ifga3          90 NALESLSWKTV---QGLSLQELVLSGNPLHCSCALRWLQRW  127 (156)
T ss_dssp             SCCSCCCSTTT---CSCCCCEEECCSSCCCCCGGGHHHHHH
T ss_pred             CCCcccChhhh---ccccccccccCCCcccCCchHHHHHHH
Confidence            77764333222   334688888888888765554444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.02  E-value=5.3e-12  Score=122.58  Aligned_cols=131  Identities=23%  Similarity=0.241  Sum_probs=82.5

Q ss_pred             CcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCC
Q 048289          528 IPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNC  606 (920)
Q Consensus       528 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  606 (920)
                      ++.++..+++|++|++++|+|+. ++ .+.... |+.|++++|.++. +|..+..+++|+.|++++|+++..  ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence            34556667777777777777763 33 344444 7777777777663 344444455677777777777643  246667


Q ss_pred             CCCcEEECCCCcccccCc-hhhcCCCCCCEEEccCceeecccCCCcc--------cCCCCCCcEEE
Q 048289          607 SFLEVLDVGNNRINGTFP-AWLGALSELQVLILRSNRFHGPITYSVT--------RFPFPKLRILD  663 (920)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~--------~~~l~~L~~L~  663 (920)
                      ++|++|++++|+++.... ..+..+++|+.|++++|++....+....        ...+|+|+.||
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777888888877764322 4567777888888888777654443211        12466777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.8e-10  Score=103.19  Aligned_cols=109  Identities=16%  Similarity=0.060  Sum_probs=81.3

Q ss_pred             CCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCC-cccccCCccccCCCcccEEEccCCccccccCccccCCCCCcE
Q 048289          534 NMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMN-NFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEV  611 (920)
Q Consensus       534 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  611 (920)
                      .+...+.++.+++.+.. .|..+...+ |++|++++| .++.+.+..|.++++|+.|+|++|+|+.+.|.+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            34445566666666653 444454444 777787655 477666778888999999999999998888888999999999


Q ss_pred             EECCCCcccccCchhhcCCCCCCEEEccCceee
Q 048289          612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFH  644 (920)
Q Consensus       612 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  644 (920)
                      |+|++|+++...+..|..+ +|+.|+|++|++.
T Consensus        85 L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            9999999985555555544 6899999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.96  E-value=3e-11  Score=117.07  Aligned_cols=112  Identities=28%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             hhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCC
Q 048289          293 CIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVN  372 (920)
Q Consensus       293 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  372 (920)
                      ..+..+++|++|++++|+++.. + .+..+++|++|++++|.++ .+|.....++.|+.|++++|.++..  ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccc
Confidence            3344444444444444444422 1 2444444555555544443 2333223334455555555555532  23555556


Q ss_pred             CCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289          373 LIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS  409 (920)
Q Consensus       373 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  409 (920)
                      |+.|++++|.++.......+..+++|+.|++++|++.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccc
Confidence            6666666666553333344555666666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-06  Score=81.23  Aligned_cols=81  Identities=23%  Similarity=0.198  Sum_probs=58.1

Q ss_pred             hcccccEEEcCCCcCCCC--chhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcc-------cc
Q 048289          722 VLNIFTTIDLSGNKFQGR--IPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPW-------QL  792 (920)
Q Consensus       722 ~~~~l~~L~Ls~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~-------~l  792 (920)
                      .++.|++|||++|+++..  ++..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.+++....       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            356788888888888754  345677788888888888888865443444456788888888888766543       25


Q ss_pred             cCCCCCCeee
Q 048289          793 TSLNFLQVLN  802 (920)
Q Consensus       793 ~~l~~L~~L~  802 (920)
                      ..+++|++||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            6677888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-07  Score=86.57  Aligned_cols=66  Identities=27%  Similarity=0.272  Sum_probs=27.9

Q ss_pred             CCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCC
Q 048289          125 HLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQ  192 (920)
Q Consensus       125 ~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  192 (920)
                      ++++|++|++++|++.+++  .+...+..+++|+.|++++|.++...+-...+...|+.|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCc--hhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444555555555444321  12222334444444444444444332222222334555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.72  E-value=9.2e-06  Score=75.14  Aligned_cols=69  Identities=13%  Similarity=0.078  Sum_probs=35.3

Q ss_pred             ccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCc----chhccCCCCCCEEEccCCcC
Q 048289          123 ISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV----PSFLTNLSSLTSLDLGNCGL  191 (920)
Q Consensus       123 l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~Ls~n~l  191 (920)
                      +...+.|++|++++|.+.......+...+...+.|++|++++|.++...    ...+...++|++|++++|.+
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            4445555555555554433333344445555555666666665555432    22344455566666655543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=6.8e-06  Score=76.07  Aligned_cols=113  Identities=12%  Similarity=0.025  Sum_probs=64.1

Q ss_pred             CCCCCEEECCCC-CCCCCC---CCCcCCCCCCCCEEeCCCCCCccc----CCccccCCCCCCEEEcCCCCCCCCCCchHH
Q 048289           77 LPHLQILNLAFN-DFNYSY---ISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLSGNSQLGLDTPVLK  148 (920)
Q Consensus        77 l~~L~~L~Ls~~-~~~~~~---i~~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~  148 (920)
                      .+.|++|+|+++ .++...   +-..+...+.|++|+|++|.+.+.    +...+...+.|++|++++|.+...+...+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456666666653 243221   122355666777777777766532    223344556777777777766544444455


Q ss_pred             HHHhcCCCCCEEEcCCCCCCCC-------cchhccCCCCCCEEEccCC
Q 048289          149 ALVQNLNELQELVLNSVDMSYE-------VPSFLTNLSSLTSLDLGNC  189 (920)
Q Consensus       149 ~~~~~l~~L~~L~L~~~~~~~~-------~~~~l~~l~~L~~L~Ls~n  189 (920)
                      ..+...+.|++|++++|.+...       +...+...++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            5666667777777776654422       2334445566666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=7.7e-05  Score=68.69  Aligned_cols=87  Identities=17%  Similarity=0.146  Sum_probs=43.2

Q ss_pred             CCCCCCEEeCCC-CCCccc----CCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCc----
Q 048289          101 RFPNLAHLNLSV-SSFSGQ----IPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEV----  171 (920)
Q Consensus       101 ~l~~L~~L~Ls~-n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~----  171 (920)
                      +.+.|++|+|++ +.++..    +...+...++|++|++++|.+.......+...+...+.++.+++++|.+....    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            445555555554 234321    22334455566666666665544333444455555566666666666554332    


Q ss_pred             chhccCCCCCCEEEcc
Q 048289          172 PSFLTNLSSLTSLDLG  187 (920)
Q Consensus       172 ~~~l~~l~~L~~L~Ls  187 (920)
                      ...+...++|+.++|+
T Consensus        95 ~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          95 VEALQSNTSLIELRID  110 (166)
T ss_dssp             HHGGGGCSSCCEEECC
T ss_pred             HHHHHhCccccEEeec
Confidence            2334445555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=4.8e-05  Score=70.11  Aligned_cols=115  Identities=15%  Similarity=0.155  Sum_probs=73.3

Q ss_pred             CCCCCCEEECCC-CCCCCCC---CCCcCCCCCCCCEEeCCCCCCccc----CCccccCCCCCCEEEcCCCCCCCCCCchH
Q 048289           76 SLPHLQILNLAF-NDFNYSY---ISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLSGNSQLGLDTPVL  147 (920)
Q Consensus        76 ~l~~L~~L~Ls~-~~~~~~~---i~~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l  147 (920)
                      +.+.|++|+|++ +.++...   +-.++...++|++|+|++|.++..    +...+...+.++.+++++|.+...+...+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            456777777776 3454321   223356778888888888877643    22345566788888888887665444556


Q ss_pred             HHHHhcCCCCCEEEcC--CCCCCCC----cchhccCCCCCCEEEccCCc
Q 048289          148 KALVQNLNELQELVLN--SVDMSYE----VPSFLTNLSSLTSLDLGNCG  190 (920)
Q Consensus       148 ~~~~~~l~~L~~L~L~--~~~~~~~----~~~~l~~l~~L~~L~Ls~n~  190 (920)
                      ...+...++|+.++|+  +|.+...    +...+...++|+.|+++.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            6677778888876664  4455442    33445567777777776543