Citrus Sinensis ID: 048290

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEESTPSPGTDDDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRKFRN
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccEEEEHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccccccccHHHHHHHccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccHccHHHccEEEcccccccccccHHHHcccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
ncsqlrvldlgknaffgeiptwtgeSLQNLIVLSLksnkfhgnipyqlchLGFIQVLDLSLNiisgkipkcfnnfsamtyercsnptigfaKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRcldlsrkiplgtqlqsfnasvyagnlelcglplankcpdeestpspgtdddsdtledenDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRKFRN
Flexible Loop (DISEMBL)
NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEESTpspgtdddsdtLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRKFRN
Low Complexity Region (SEG)
NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEEstpspgtdddsdtledendQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRKFRN
Disordered region (IsUnstruct)
****LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLAN*************************QFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLR****
Disordered Region (DISOPRED)
NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLAN*************************QFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRKF**
Disordered Region (DISEMBL)
NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKC****************TLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRKFRN
Disordered Region (DISPRO)
*CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKC**********************DQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEESTPSPGTDDDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVNIAKLLRKFRN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q9C9Y8	640	Probable inactive recepto	no	no	0.584	0.231	0.284	1e-08
Q9SYQ8	980	Receptor protein kinase C	no	no	0.739	0.190	0.298	1e-08
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.288	0.058	0.445	2e-08
Q9LHP4	1141	Receptor-like protein kin	no	no	0.280	0.062	0.424	9e-08
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.288	0.068	0.391	1e-07
O49318	1124	Probable leucine-rich rep	no	no	0.304	0.068	0.384	1e-07
Q8RWZ1	768	Protein STRUBBELIG OS=Ara	no	no	0.292	0.096	0.402	2e-07
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.280	0.059	0.416	3e-07
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.347	0.089	0.395	4e-07
C0LGS3	768	Probable LRR receptor-lik	no	no	0.826	0.272	0.263	4e-07

>sp|Q9C9Y8|Y3868_ARATH Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 81/197 (41%), Gaps = 49/197 (24%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQV---- 56
           N +++  L L  +  +G +P  T E L  L ++SL+SN   GNIP  +  L FI+     
Sbjct: 65  NNARVTALRLPGSGLYGPLPEKTFEKLDALRIISLRSNHLQGNIPSVILSLPFIRSLYFH 124

Query: 57  ------------------LDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPA 98
                             LDLS N +SG IP    N + +T     N ++        P 
Sbjct: 125 ENNFSGTIPPVLSHRLVNLDLSANSLSGNIPTSLQNLTQLTDLSLQNNSLSGPIPNLPP- 183

Query: 99  GTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELC 158
                 KYL NL                     +L+  +P  + ++SF AS + GN  LC
Sbjct: 184 ----RLKYL-NLSFN------------------NLNGSVP--SSVKSFPASSFQGNSLLC 218

Query: 159 GLPLANKCPDEESTPSP 175
           G PL   CP+  + PSP
Sbjct: 219 GAPL-TPCPENTTAPSP 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 92/211 (43%), Gaps = 24/211 (11%)

Query: 7   VLD---LGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI 63
           VLD   L  N F GEIP   G +  NL  L L  N+F GNIP ++  L  +  ++ S N 
Sbjct: 457 VLDQIYLSNNWFSGEIPPAIG-NFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANN 515

Query: 64  ISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKS 123
           I+G IP   +  S +     S   I       +P G     K L  L ++         +
Sbjct: 516 ITGGIPDSISRCSTLISVDLSRNRINGE----IPKGIN-NVKNLGTLNISGNQLTGSIPT 570

Query: 124 TLGLVRCL--------DLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEESTPSP 175
            +G +  L        DLS ++PLG Q   FN + +AGN  LC LP    CP   + P  
Sbjct: 571 GIGNMTSLTTLDLSFNDLSGRVPLGGQFLVFNETSFAGNTYLC-LPHRVSCP---TRPGQ 626

Query: 176 GTDDDSDTLEDENDQFITLGFYLSSILGFFV 206
            +D +   L   +   IT+   +++I G  +
Sbjct: 627 TSDHNHTALFSPSRIVITV---IAAITGLIL 654

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 5   LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64
           L +L+L  N+  GEIP+  GE +  L  LSL +N+  G IP  L  LG +Q LDLS N +
Sbjct: 241 LEILNLANNSLTGEIPSQLGE-MSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNL 299

Query: 65  SGKIPKCFNNFSAM 78
           +G+IP+ F N S +
Sbjct: 300 TGEIPEEFWNMSQL 313

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 2   CSQLRVLDLGKNAFFGEIPTWTGESLQNL-IVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           CS L++LDLG N   GEIP+  G+ ++NL I L+L SN+  G IP ++  L  + +LDLS
Sbjct: 585 CSGLQLLDLGSNELSGEIPSELGD-IENLEIALNLSSNRLTGKIPSKIASLNKLSILDLS 643

Query: 61  LNIISGKIPKCFN 73
            N++ G +    N
Sbjct: 644 HNMLEGDLAPLAN 656

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 2   CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSL 61
           C  L  L +G+N   G+IP   GE LQNL+ L L  N F G +PY++ ++  +++LD+  
Sbjct: 451 CQSLVRLRVGENQLSGQIPKEIGE-LQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHN 509

Query: 62  NIISGKIPKCFNNF 75
           N I+G IP    N 
Sbjct: 510 NYITGDIPAQLGNL 523

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC  L+ LDL +N+F G +P   G SL  L +L L  N+F GNIP+ + +L  +  L + 
Sbjct: 563 NCKMLQRLDLSRNSFIGSLPPELG-SLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMG 621

Query: 61  LNIISGKIPKCFNNFSAM 78
            N+ SG IP      S++
Sbjct: 622 GNLFSGSIPPQLGLLSSL 639

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RWZ1|SUB_ARATH Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 3   SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
           S ++V+D   N   G IP     S++NL   SL SN+F GNIP+ L  L  +  L L  N
Sbjct: 93  SSIQVMDFSSNHISGTIPQALPSSIRNL---SLSSNRFTGNIPFTLSFLSDLSELSLGSN 149

Query: 63  IISGKIPKCFNNFSAMT 79
           ++SG+IP  F   S +T
Sbjct: 150 LLSGEIPDYFQQLSKLT 166

Regulates the expression of transcription factors that define the cell fates. Seems to be required for the regulation of cell shape and the orientation of the mitotic division plane. Involved in root hair specification, in the formation of the outer integument and the shape of organs such as carpels and petals and is necessary for the shape and height of the stem.

Arabidopsis thaliana (taxid: 3702)

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC+ L  + L  N   GEIP W G  L+NL +L L +N F GNIP +L     +  LDL+
Sbjct: 510 NCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 568

Query: 61  LNIISGKIPKCF 72
            N+ +G IP   
Sbjct: 569 TNLFNGTIPAAM 580

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N + L VLDL +N F G+IP   G   + L  LSL  N  HGNIP +L  L  +  LDL 
Sbjct: 88  NLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLG 147

Query: 61  LNIISGKIPK---CFNNFSAMTYERCSNPTI 88
            N ++G IP    C  + S++ Y   SN ++
Sbjct: 148 SNRLNGSIPVQLFCNGSSSSLQYIDLSNNSL 178

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 34/243 (13%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N  +LR LDL  N   GEIP+  G+ L NL+ L+L  N   G +P  L  L  + V+ L 
Sbjct: 112 NARELRFLDLSSNMISGEIPSAIGD-LHNLLTLNLSDNALAGKLPTNLASLRNLTVVSLE 170

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
            N  SG+IP     +  + +   S+  I  +     P   GY  +YL N+       E  
Sbjct: 171 NNYFSGEIP---GGWRVVEFLDLSSNLINGS---LPPDFGGYSLQYL-NVSFNQISGEIP 223

Query: 121 YKSTLGLVRCL-------DLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKC--PDEES 171
            +  +   R +       +L+  IP      +  ++ ++GN  LCG P  N C  P   S
Sbjct: 224 PEIGVNFPRNVTVDLSFNNLTGPIPDSPVFLNQESNFFSGNPGLCGEPTRNPCLIPSSPS 283

Query: 172 --------TPSP---------GTDDDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGT 214
                   T +P         G++  +D    + D     G     I+G  VG     G 
Sbjct: 284 IVSEADVPTSTPAIAAIPNTIGSNPVTDPNSQQTDPNPRTGLRPGVIIGIVVGDIAGIGI 343

Query: 215 LML 217
           L +
Sbjct: 344 LAV 346

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
147807651	971	hypothetical protein VITISV_018647 [Viti	0.996	0.259	0.371	5e-46
358344148	371	Receptor-like protein kinase [Medicago t	0.968	0.660	0.323	5e-42
359496388	1014	PREDICTED: brassinosteroid LRR receptor	0.972	0.242	0.375	4e-40
359496717	1014	PREDICTED: brassinosteroid LRR receptor	0.972	0.242	0.371	1e-39
359488633	981	PREDICTED: LRR receptor-like serine/thre	0.984	0.253	0.342	2e-39
147790721	780	hypothetical protein VITISV_031879 [Viti	0.901	0.292	0.380	3e-39
359488591	981	PREDICTED: probable leucine-rich repeat	0.984	0.253	0.339	4e-39
147770493	1024	hypothetical protein VITISV_019847 [Viti	0.972	0.240	0.368	6e-39
359496701	904	PREDICTED: LRR receptor-like serine/thre	0.960	0.268	0.369	9e-39
359496699	1007	PREDICTED: LRR receptor-like serine/thre	0.960	0.241	0.363	2e-38

>gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera]

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/323 (37%), Positives = 159/323 (49%), Gaps = 71/323 (21%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC  LR++DLGKN   G+I  W G SL +LIVL+L+SN+F+G+IP  LC L  IQ+LDLS
Sbjct: 648 NCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLS 707

Query: 61  LNIISGKIPKCFNNFSAMTYER-----------CSNPTIGFAKLIFVPAGTGYYYKYLVN 109
            N +SGKIPKC  N +AM  +R            SNP       +    G    YK  + 
Sbjct: 708 SNNLSGKIPKCLKNLTAMAQKRSQVLFYDTWYDASNPHYYVDSTLVQWKGKEQEYKKTLG 767

Query: 110 LLLTWKGSENEY----------------------------KSTLG---LVRCLDLSR--- 135
           L+ +   S N+                              +T+G   L+  LDLS+   
Sbjct: 768 LIKSIDFSSNKLIGEIPIEVTDLVELVSLNLSSNNLIGSIPTTIGQLKLLDVLDLSQNQL 827

Query: 136 --------------------------KIPLGTQLQSFNASVYAGNLELCGLPLANKCPDE 169
                                     KIPLGTQLQSF+AS Y GN  LCG PL  +CP++
Sbjct: 828 NGRIPDTLSQIADLSVLDLSNNTLLGKIPLGTQLQSFDASTYEGNPGLCGPPLLKRCPED 887

Query: 170 ESTPSPGTDDDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFL 229
           E          S   ED  D    + FY + +LGF +GFWGVCGTL+ N SWRY +F  L
Sbjct: 888 ELGGVSFISGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLFNSSWRYAYFQLL 947

Query: 230 TSMKDWVYVIWAVNIAKLLRKFR 252
           + +KDW+YV   VN+ ++ R  +
Sbjct: 948 SKIKDWLYVTTIVNMNRIRRSLQ 970

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344148|ref|XP_003636154.1| Receptor-like protein kinase [Medicago truncatula] gi|355502089|gb|AES83292.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 64/309 (20%)

Query: 4   QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI 63
           Q+  L L  N F G +P W G  L  LIVL L++NKF G+IP  +C+L  +Q+LDLS N 
Sbjct: 64  QIESLHLNNNNFSGSLPMWIGHHLHQLIVLRLRANKFQGSIPTSMCNLSLLQILDLSQNN 123

Query: 64  ISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYY-KYLVNLLLTWKGSENEYK 122
           I+G IP+CF++  A++  +       ++ +        Y    +    +LT KG   EY+
Sbjct: 124 ITGGIPECFSHIVALSNLKSPRNIFHYSSITVYEDSEVYEIGSFNDKEILTLKGYSREYE 183

Query: 123 STLGL------------------------------------------------VRCLDLS 134
           + LG                                                 ++ LDLS
Sbjct: 184 TNLGYWTTIDLSCNHLIGEIPEGITKLVALAALNLSWNNLKGFIPSNIGHMESLQSLDLS 243

Query: 135 RK-----------IPLGTQLQSFNASVYAGNLELCGLPLANKCPDEESTPSPGTDDDSDT 183
           R            IP+ TQLQ+F  S Y GN  LCG P+ N CP + +     + D   T
Sbjct: 244 RNHLSGRMPTKGNIPISTQLQTFGPSSYVGNSRLCGPPITNLCPGDVTR----SHDKHVT 299

Query: 184 LEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVIWAVN 243
            E++ D+ IT GFY+S ++GFF+GFWGVCGTL++  SWR+ +F F  ++ DW++V  +V 
Sbjct: 300 NEEDEDKLITFGFYVSLVIGFFIGFWGVCGTLVIKTSWRHAYFKFFNNINDWIHVTLSVF 359

Query: 244 IAKLLRKFR 252
           + +L ++ +
Sbjct: 360 VNRLKKRLQ 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496388|ref|XP_003635224.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 152/312 (48%), Gaps = 66/312 (21%)

Query: 1    NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            NC  +   DLG N   G +P+W GE +Q+L++L L+SN F GNIP Q+C L  + +LDL+
Sbjct: 697  NCKDMDSFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLA 755

Query: 61   LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYK---YLVNLL------ 111
             N +SG +P C  N S M  E  S    G  +L  V  G    Y+   YLVN +      
Sbjct: 756  HNNLSGSVPSCLGNLSGMATEISSERYEG--QLSVVMKGRELIYQNTLYLVNSIDLSDNN 813

Query: 112  ----------LTWKGSEN-----------EYKSTLGLVRCLDLSR--------------- 135
                      L+  G+ N           E   +L  +  LDLSR               
Sbjct: 814  ISGKLPELRNLSRLGTLNLSRNHLTGNIPEDVGSLSQLETLDLSRNQLSGLIPPSMVSMT 873

Query: 136  --------------KIPLGTQLQSFN-ASVYAGNLELCGLPLANKCP--DEESTPSPGTD 178
                          KIP   Q Q+FN  S+Y  NL LCG PLA KCP  DE +T S G D
Sbjct: 874  SLNHLNLSYNRLSGKIPTSNQFQTFNDPSIYRNNLALCGEPLAMKCPGDDEATTDSSGVD 933

Query: 179  DDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYV 238
            ++ D  ++  D F    FY+S   GF VGFWGV G L++NRSWR  +F FL  MKD V V
Sbjct: 934  NE-DHDDEHEDAFEMKWFYMSMGPGFVVGFWGVFGPLIINRSWRRAYFRFLDEMKDRVMV 992

Query: 239  IWAVNIAKLLRK 250
            +  VN+A L +K
Sbjct: 993  VITVNVAWLQKK 1004

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 152/312 (48%), Gaps = 66/312 (21%)

Query: 1    NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            NC  +   DLG N   G +P+W GE +Q+L++L L+SN F GNIP Q+C L  + +LD++
Sbjct: 697  NCKDMDSFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDVA 755

Query: 61   LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYK---YLVNLL------ 111
             N +SG +P C  N S M  E  S    G  +L  V  G    Y+   YLVN +      
Sbjct: 756  HNNLSGSVPSCLGNLSGMATEISSERYEG--QLSVVMKGRELIYQNTLYLVNSIDLSDNN 813

Query: 112  ----------LTWKGSEN-----------EYKSTLGLVRCLDLSR--------------- 135
                      L+  G+ N           E   +L  +  LDLSR               
Sbjct: 814  ISGKLPELRNLSRLGTLNLSRNHLTGNIPEDVGSLSQLETLDLSRNQLSGLIPPSMVSMT 873

Query: 136  --------------KIPLGTQLQSFN-ASVYAGNLELCGLPLANKCP--DEESTPSPGTD 178
                          KIP   Q Q+FN  S+Y  NL LCG PLA KCP  DE +T S G D
Sbjct: 874  SLNHLNLSYNRLSGKIPTSNQFQTFNDPSIYRNNLALCGEPLAMKCPGDDEATTDSSGVD 933

Query: 179  DDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYV 238
            ++ D  ++  D F    FY+S   GF VGFWGV G L++NRSWR  +F FL  MKD V V
Sbjct: 934  NE-DHDDEHEDAFEMKWFYMSMGPGFVVGFWGVFGPLIINRSWRRAYFRFLDEMKDRVMV 992

Query: 239  IWAVNIAKLLRK 250
            +  VN+A L +K
Sbjct: 993  VITVNVAWLQKK 1004

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488633|ref|XP_002264905.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 149/312 (47%), Gaps = 63/312 (20%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NCS +  LDLG N F G +P W GE + NL++L L+SN FHG+ P QLC L  + +LDL 
Sbjct: 667 NCSGIHTLDLGGNRFSGNVPAWIGERMPNLLILRLRSNLFHGSFPSQLCTLSALHILDLG 726

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYK---YLVNLL------ 111
            N + G IP C  N S M  E  S    G  +L+ +  G    Y    YLVN +      
Sbjct: 727 ENNLLGFIPSCVGNLSGMASEIDSQRYEG--ELMVLRKGREDLYNSILYLVNSMDLSHNN 784

Query: 112 -----------LTWKGSEN-----------EYKSTLGLVRCLDLSR-------------- 135
                      LT  G+ N           +   +L  +  LDLSR              
Sbjct: 785 LSGEVPEGVTNLTRLGTLNLSVNHLTGKIPDNIGSLQGLETLDLSRNQLSGVIPSGMASL 844

Query: 136 ---------------KIPLGTQLQSFN-ASVYAGNLELCGLPLANKCPDEESTPSPGTDD 179
                          +IP G QLQ+ +  S+Y  N  LCG P   KCP +E  P P + D
Sbjct: 845 TSLNHLNLSYNNLSGRIPTGNQLQTLDDPSIYENNPALCGPPTTAKCPGDEEPPKPRSGD 904

Query: 180 DSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVI 239
           + +   +  D F    FY+S   GF VGFWGVCGTL++  SWR+ +F  +  +K+W+ ++
Sbjct: 905 NEEAENENRDGFEIKWFYVSMGPGFAVGFWGVCGTLIVKNSWRHAYFRLVYDVKEWLLMV 964

Query: 240 WAVNIAKLLRKF 251
            ++N+A+L RK 
Sbjct: 965 ISLNVARLRRKL 976

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790721|emb|CAN65307.1| hypothetical protein VITISV_031879 [Vitis vinifera]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/268 (38%), Positives = 138/268 (51%), Gaps = 40/268 (14%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           +C+ L +LDL  N   G  P W GE L  L  L L+SNKF   IP Q+C L  + +LD+S
Sbjct: 500 DCTSLGLLDLSGNKLLGNXPNWIGE-LXALKXLCLRSNKFIXEIPSQICQLSSLTILDVS 558

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
            N +SG IP+C NNFS M        TI     +F       Y   L  L+L   G E E
Sbjct: 559 DNELSGIIPRCLNNFSLMA-------TIDTPDDLFTDLEYSSYE--LEGLVLXTVGRELE 609

Query: 121 YKSTLGLVRCLDLSR------------------------KIPLGTQLQSFNASVYAGNLE 156
           YK  L  VR +DLS                         +IPL TQLQSF+A  Y GN +
Sbjct: 610 YKGILXYVRMVDLSSEIPQSLADLTFLNCLNLSYNQFRGRIPLSTQLQSFDAFSYIGNAQ 669

Query: 157 LCGLPLANKCPDEESTPSPGTDDDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLM 216
           LCG+PL   C +++ +    T D+++   +    +I++G      LGF  GFWGVCG L+
Sbjct: 670 LCGVPLTKNCTEDDESQGMDTIDENEEGSEMRWLYISMG------LGFIXGFWGVCGALL 723

Query: 217 LNRSWRYGFFNFLTSMKDWVYVIWAVNI 244
             +SWR+ +F FL  ++DWVYV  A+ +
Sbjct: 724 XKKSWRHAYFQFLYDIRDWVYVAVAIRL 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488591|ref|XP_003633783.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 151/312 (48%), Gaps = 63/312 (20%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC+ +  LDLG N F G +P W GE + NL++L L+SN FHG+IP QLC L  + +LDL 
Sbjct: 667 NCTAIHTLDLGGNRFSGNVPAWIGERMPNLLILRLRSNLFHGSIPSQLCTLSSLHILDLG 726

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYK---YLVNLL------ 111
            N +SG IP C  N S M  E  S      A+L+    G    YK   YLVN +      
Sbjct: 727 ENNLSGFIPSCVGNLSGMVSEIDSQRY--EAELMVWRKGREDLYKSILYLVNSMDLSNNN 784

Query: 112 -----------LTWKGSEN-----------EYKSTLGLVRCLDLSR-------------- 135
                      L+  G+ N           +  ++L  +  LDLSR              
Sbjct: 785 LSGEVPEGVTNLSRLGTLNLSINHLTGKIPDKIASLQGLETLDLSRNQLSGVIPPGMASL 844

Query: 136 ---------------KIPLGTQLQSFN-ASVYAGNLELCGLPLANKCPDEESTPSPGTDD 179
                          +IP G QLQ+ +  S+Y  N  LCG P   KCP ++  P P + D
Sbjct: 845 TSLNHLNLSYNNLSGRIPTGNQLQTLDDPSIYENNPALCGPPTTAKCPGDDEPPKPRSRD 904

Query: 180 DSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVI 239
             +   +  + F    FY+S   GF VGFWGVCGTL++  SWR+ +F  +  +K+W+ ++
Sbjct: 905 SEEDENENGNGFEMKWFYVSMGPGFAVGFWGVCGTLIVKDSWRHAYFRLVYDVKEWLLMV 964

Query: 240 WAVNIAKLLRKF 251
            ++N+A+L RK 
Sbjct: 965 ISLNVARLRRKL 976

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770493|emb|CAN78141.1| hypothetical protein VITISV_019847 [Vitis vinifera]

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 151/312 (48%), Gaps = 66/312 (21%)

Query: 1    NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            NC  +   DLG N   G +P+W GE +Q+L++L L+SN F GNIP Q+C L  + +LDL+
Sbjct: 715  NCKDMDSFDLGDNRLSGNLPSWIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLA 773

Query: 61   LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYK---YLVNLL------ 111
             N +SG +P C  N S M  E  S    G  +L  V  G    Y+   YLVN +      
Sbjct: 774  HNNLSGSVPSCLGNLSGMATEISSERYEG--QLSVVMKGRELIYQNTLYLVNSIDLSDNN 831

Query: 112  ----------LTWKGSEN-----------EYKSTLGLVRCLDLSR--------------- 135
                      L+  G+ N           E   +L  +  LDLSR               
Sbjct: 832  ISGKLPELRNLSRLGTLNLSINHLTGNIPEDXGSLSQLETLDLSRNQLSGLIPPSMVSMT 891

Query: 136  --------------KIPLGTQLQSFN-ASVYAGNLELCGLPLANKCP--DEESTPSPGTD 178
                          KIP   Q Q+FN  S+Y  NL LCG PLA KCP  DE +T S G D
Sbjct: 892  SLNHLNLSYNRLSGKIPTSNQFQTFNDPSIYRNNLALCGEPLAMKCPGDDEATTDSSGVD 951

Query: 179  DDSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYV 238
            ++ D  ++  D F    FY+S   GF VGFWGV G L++NRSWR  +F FL  MKD V V
Sbjct: 952  NE-DHDDEHEDAFEMKWFYMSMGPGFVVGFWGVFGPLIINRSWRRAYFRFLBEMKDRVMV 1010

Query: 239  IWAVNIAKLLRK 250
            +   ++A L +K
Sbjct: 1011 VITESVAWLQKK 1022

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496701|ref|XP_003635305.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like, partial [Vitis vinifera]

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/311 (36%), Positives = 149/311 (47%), Gaps = 68/311 (21%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC  +   DLG N   G +PTW GE +Q+L++L L+SN F GNIP Q+C+L  + +LDL+
Sbjct: 591 NCKDMDSFDLGDNRLSGNLPTWIGE-MQSLLILRLRSNFFDGNIPSQVCNLSHLHILDLA 649

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYK---YLVNLL------ 111
            N +SG +P C  N S M  E       G  +L  V  G    Y+   YLVN +      
Sbjct: 650 HNNLSGSVPSCLGNLSGMATEISDERYEG--RLSVVVKGRELIYQSTLYLVNSIDLSDNN 707

Query: 112 LTWKGSENEYKSTLGLV---------------------RCLDLSR--------------- 135
           L+ K  E    S LG +                       LDLSR               
Sbjct: 708 LSGKLPEIRNLSRLGTLNLSINHFTGNIPEDIGGLSQLETLDLSRNQLSGPIPPSMTSLT 767

Query: 136 --------------KIPLGTQLQSFN-ASVYAGNLELCGLPLANKCP-DEESTPSPGTDD 179
                         KIP   Q Q+FN  S+Y  NL LCG PL  KCP D+++T    TD 
Sbjct: 768 SLNHLNLSYNSLSGKIPTSNQFQTFNDPSIYRNNLALCGDPLPMKCPGDDKAT----TDS 823

Query: 180 DSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVI 239
                ED +D+F    FY+S   GF VGFW V G L++NRSWR  +F FL  MKD V V+
Sbjct: 824 SRAGNEDHDDEFEMRWFYVSMGPGFVVGFWAVFGPLIINRSWRRAYFRFLDEMKDRVMVV 883

Query: 240 WAVNIAKLLRK 250
             VN+A+L +K
Sbjct: 884 ITVNVARLQKK 894

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496699|ref|XP_003635304.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 151/311 (48%), Gaps = 68/311 (21%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC  +   DLG N   G +P+W GE +Q+L++LSL+SN F GNIP Q+C+L  + +LDL+
Sbjct: 694 NCKDMDSFDLGDNRLSGNLPSWIGE-MQSLLILSLRSNFFDGNIPSQVCNLSHLHILDLA 752

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYK---YLVNLL------ 111
            N +SG +P C  N S +  E       G  +L+ V  G    Y+   YLVN++      
Sbjct: 753 HNNLSGSVPSCLGNLSGIATEISDERYEG--RLLVVVKGRELIYQSTLYLVNIIDLSDNN 810

Query: 112 LTWKGSENEYKSTLGLV---------------------RCLDLSRK-------------- 136
           L+ K  E    S LG +                       LDLSR               
Sbjct: 811 LSGKLPEIRNLSRLGTLNLSINHFTGNIPEDIGGLSQLETLDLSRNQLSGPIPPSMISLT 870

Query: 137 ---------------IPLGTQLQSFN-ASVYAGNLELCGLPLANKCP-DEESTPSPGTDD 179
                          IP   Q Q+FN  S+Y  NL LCG PL  KCP D+++T    TD 
Sbjct: 871 FLNHLNLSYNRLSGIIPTSNQFQTFNDPSIYRDNLALCGDPLPMKCPGDDKAT----TDS 926

Query: 180 DSDTLEDENDQFITLGFYLSSILGFFVGFWGVCGTLMLNRSWRYGFFNFLTSMKDWVYVI 239
                ED +D+F    FY+S   GF VGFW V G L++NRSWR  +F FL  MKD V V+
Sbjct: 927 SRAGNEDHDDEFEMRWFYVSMGPGFVVGFWAVFGPLIINRSWRRAYFRFLDEMKDRVMVV 986

Query: 240 WAVNIAKLLRK 250
             VN+A+L +K
Sbjct: 987 ITVNVARLQKK 997

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.541	0.151	0.381	1.1e-16
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.320	0.083	0.421	1.3e-16
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.308	0.087	0.443	5.4e-14
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.276	0.074	0.402	2.9e-12
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.312	0.082	0.462	9.3e-11
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.268	0.068	0.457	1.9e-10
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.249	0.070	0.437	2e-10
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.316	0.110	0.372	2.4e-10
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.276	0.077	0.402	4e-10
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.521	0.152	0.302	5.5e-10

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 55/144 (38%), Positives = 82/144 (56%)

Query:     1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             NCS L  +DLG N   G++P+W G+ L +L +L L+SN F G IP  LC++  +++LDLS
Sbjct:   685 NCSGLTNIDLGGNKLTGKLPSWVGK-LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLS 743

Query:    61 LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
              N ISG IPKC +N +A+   R +N  + F  L+F+      Y     ++ L+      E
Sbjct:   744 GNKISGPIPKCISNLTAIA--RGTNNEV-FQNLVFIVTRAREYEAIANSINLSGNNISGE 800

Query:   121 Y-KSTLGLV--RCLDLSRKIPLGT 141
               +  LGL+  R L+LSR    G+
Sbjct:   801 IPREILGLLYLRILNLSRNSMAGS 824

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 35/83 (42%), Positives = 53/83 (63%)

Query:     3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
             + + +LDL  N F G+IP +   ++QN+ +L L+ N F G IP+QLC L  IQ+LDLS N
Sbjct:   628 ANVEILDLRNNRFSGKIPEFI--NIQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNN 685

Query:    63 IISGKIPKCFNNFSAMTYERCSN 85
              ++G IP C +N S    + C++
Sbjct:   686 RLNGTIPSCLSNTSFGFGKECTS 708

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
 Identities = 35/79 (44%), Positives = 48/79 (60%)

Query:     1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQ-LCHLGFIQVLDL 59
             N + L VLDL  N F G++PT    +L+NL  L L +NKF G++  Q +C L  +Q L L
Sbjct:   126 NLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRL 185

Query:    60 SLNIISGKIPKCFNNFSAM 78
             S N   G+IP CF+ FS +
Sbjct:   186 SRNRFEGEIPLCFSRFSKL 204

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 29/72 (40%), Positives = 45/72 (62%)

Query:     5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64
             +++LDL  N   G IP +  +  Q++ +L LK N   G+IP +LC L  +++LDLS N +
Sbjct:   606 VQILDLRNNKLSGSIPQF--DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKL 663

Query:    65 SGKIPKCFNNFS 76
             +G IP C +N S
Sbjct:   664 NGVIPSCLSNLS 675

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
 Identities = 37/80 (46%), Positives = 46/80 (57%)

Query:     1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             N S L  LDL  N FFG+ P+  G  L +L  LSL SNKF G IP  + +L  +  LDLS
Sbjct:   191 NLSHLTFLDLSYNRFFGQFPSSIG-GLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLS 249

Query:    61 LNIISGKIPKCFNNFSAMTY 80
              N  SG+IP    N S +T+
Sbjct:   250 NNNFSGQIPSFIGNLSQLTF 269

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 32/70 (45%), Positives = 42/70 (60%)

Query:     7 VLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG 66
             VLDL  N   G +P +   + QN+ +L L+ N F G IP+Q C L  IQ+LDLS N  +G
Sbjct:   647 VLDLRNNRLSGNLPEFI--NTQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNG 704

Query:    67 KIPKCFNNFS 76
              IP C +N S
Sbjct:   705 SIPSCLSNTS 714

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query:     6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65
             + +D+  N   G+IP   G  L+ LIVL++ +N F G+IP  L +L  +Q LDLS N +S
Sbjct:   716 KTIDVSGNRLEGDIPESIG-ILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLS 774

Query:    66 GKIP 69
             G IP
Sbjct:   775 GSIP 778

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 32/86 (37%), Positives = 46/86 (53%)

Query:     6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65
             + +D+  N   G+IP   G  L+ LIVL++ +N F G+IP  L +L  +Q LDLS N +S
Sbjct:   558 KTIDVSGNRLEGDIPESIG-ILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLS 616

Query:    66 GKIPK-----CFNNFSAMTYERCSNP 86
             G IP       F  +   +Y R   P
Sbjct:   617 GSIPPELGKLTFLEWMNFSYNRLEGP 642

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:     5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64
             +++LDL  N   G IP +     Q++  L L+ N   G IP  LC    +++LDLS N +
Sbjct:   580 IQILDLRNNKLSGNIPQFV--DTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKL 637

Query:    65 SGKIPKCFNNFS 76
             +G IP CFNN S
Sbjct:   638 NGFIPSCFNNLS 649

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
 Identities = 42/139 (30%), Positives = 67/139 (48%)

Query:     1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI--PYQLCHLGF--IQV 56
             NCS LR L +  N      P W  ++L NL VL+L+SNKF+G I  P+Q   LGF  +++
Sbjct:   561 NCSSLRFLSVDNNRVKDTFPFWL-KALPNLRVLTLRSNKFYGPISPPHQ-GPLGFPELRI 618

Query:    57 LDLSLNIISGKIPKCFN-NFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWK 115
              +++ N+ +G +P  F  N+ A    +  +  +         A +   Y Y   + L +K
Sbjct:   619 FEIADNMFTGSLPPSFFVNWKASALTKNEDGGLYMVYEYDKAANSPVRYTYTDTIDLQYK 678

Query:   116 GSENEYKSTLGLVRCLDLS 134
             G   E +  L     +D S
Sbjct:   679 GLHMEQERVLTSYAAIDFS 697

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014061001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (623 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           +  +L  LDL  N+  GEIP    + LQNL +L L SN F G IP  L  L  +QVL L 
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 61  LNIISGKIPKCF---NNFSAM 78
            N  SG+IPK     NN + +
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVL 361

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 2   CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSL 61
            S LR L+L  N F G IP     S+ NL  L L +N   G IP  +     ++VLDL  
Sbjct: 117 SSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173

Query: 62  NIISGKIPKCFNNFSAMTY 80
           N++ GKIP    N +++ +
Sbjct: 174 NVLVGKIPNSLTNLTSLEF 192

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N + L  L L  N   G+IP   G+ +++L  + L  N   G IPY++  L  +  LDL 
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N ++G IP    N   + Y
Sbjct: 245 YNNLTGPIPSSLGNLKNLQY 264

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           + S+L  L L +N   GEIP     S + L+ L L  N+  G IP     +  +  LDLS
Sbjct: 497 SLSELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 61  LNIISGKIPK 70
            N +SG+IPK
Sbjct: 556 QNQLSGEIPK 565

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 5   LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII 64
           L +L L  N F G+IP     SL  L VL L SNKF G IP  L     + VLDLS N +
Sbjct: 310 LEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 65  SGKIP 69
           +G+IP
Sbjct: 369 TGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 47/152 (30%), Positives = 64/152 (42%), Gaps = 15/152 (9%)

Query: 4   QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI 63
           +L+VL L  N F GEIP   G+   NL VL L +N   G IP  LC  G +  L L  N 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 64  ISGKIPKCFNNFSAMTYERCSNPTI------GFAKLIFVPAGTGYYYKYLVNLLLTWKGS 117
           + G+IPK      ++   R  + +        F KL  V     Y+     N L    G 
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-----YFLDISNNNLQ---GR 443

Query: 118 ENEYKSTLGLVRCLDLSRKIPLGTQLQSFNAS 149
            N  K  +  ++ L L+R    G    SF + 
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSK 475

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 3   SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
            +L  LDL +N F G +P   G SL  L+ L L  NK  G IP +L     +  LDLS N
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 63  IISGKIPKCFNNF 75
            +SG+IP  F+  
Sbjct: 534 QLSGQIPASFSEM 546

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 4   QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI 63
            L+ ++L  N+  G IP   G S+ +L VL L  N F+G+IP  L  L  +++L+L+ N 
Sbjct: 443 HLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 64  ISGKIP 69
           +SG++P
Sbjct: 502 LSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 8   LDLGKNAFFGEIPT--WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS 65
           LD+  N   G I +  W   SLQ   +LSL  NKF G +P        ++ LDLS N  S
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQ---MLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFS 488

Query: 66  GKIPKCFNNFS 76
           G +P+   + S
Sbjct: 489 GAVPRKLGSLS 499

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 3   SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
             L  LDL  N   GEIP   G S  +L VL L  N   G IP  L +L  ++ L L+ N
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 63  IISGKIPK 70
            + G+IP+
Sbjct: 199 QLVGQIPR 206

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)

Query: 5   LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFI---QVLDLSL 61
           ++ ++L  N   G IP     +  +L  L+L +N F G+IP      G I   + LDLS 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----GSIPNLETLDLSN 149

Query: 62  NIISGKIPKCFNNFSAM 78
           N++SG+IP    +FS++
Sbjct: 150 NMLSGEIPNDIGSFSSL 166

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 3   SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
           + L  LDL  N   G IP+  G  L+NL  L L  NK  G IP  +  L  +  LDLS N
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 63  IISGKIPK 70
            +SG+IP+
Sbjct: 295 SLSGEIPE 302

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 8   LDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG 66
           L L      G IP   +   L++L  ++L  N   GNIP  L  +  ++VLDLS N  +G
Sbjct: 423 LGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 67  KIP 69
            IP
Sbjct: 481 SIP 483

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN03150	623	hypothetical protein; Provisional	99.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.57
PLN03150	623	hypothetical protein; Provisional	99.32
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.04
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.03
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.01
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.7
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.65
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.46
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.4
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.21
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.98
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.92
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.72
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.72
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.63
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.28
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.27
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.79
PRK15386	426	type III secretion protein GogB; Provisional	94.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.65
smart00370	26	LRR Leucine-rich repeats, outliers.	94.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.92
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.77
PRK15386	426	type III secretion protein GogB; Provisional	92.56
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	92.35
smart00370	26	LRR Leucine-rich repeats, outliers.	91.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.89
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	89.21
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.4
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.97
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.85
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.42
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	83.38
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	82.28
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.02

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=8.8e-20  Score=179.79  Aligned_cols=147  Identities=27%  Similarity=0.396  Sum_probs=109.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|+|++|++.|.+|..+.  .++|+.|+|++|+++|.+|..+..+++|+.|+|++|+++|.+|..+.++++|+.|
T Consensus       451 l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  528 (968)
T PLN00113        451 MPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL  528 (968)
T ss_pred             CCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence            46677777777777777776553  5777777777777777777777777777777777777777777777777777777


Q ss_pred             c--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCCCCCCCCC
Q 048290           82 R--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLGTQLQSFN  147 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~~~l~~~~  147 (253)
                      +  .|.+.    +.+|..       ..+.+.+|.       ++|.+|..+..++.|+.+|+++     .+|..+++.++.
T Consensus       529 ~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~  597 (968)
T PLN00113        529 DLSHNQLS----GQIPASFSEMPVLSQLDLSQNQ-------LSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAIN  597 (968)
T ss_pred             ECCCCccc----ccCChhHhCcccCCEEECCCCc-------ccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccC
Confidence            7  33332    223322       223344444       6899999999999999999998     799999999999


Q ss_pred             ccccCCcCCCCCcc
Q 048290          148 ASVYAGNLELCGLP  161 (253)
Q Consensus       148 ~~~~~gN~~LCg~~  161 (253)
                      ..++.||+++||.+
T Consensus       598 ~~~~~~n~~lc~~~  611 (968)
T PLN00113        598 ASAVAGNIDLCGGD  611 (968)
T ss_pred             hhhhcCCccccCCc
Confidence            99999999999865

>PLN03150 hypothetical protein; Provisional

Probab=99.76  E-value=5e-18  Score=159.48  Aligned_cols=118  Identities=26%  Similarity=0.401  Sum_probs=98.5

Q ss_pred             ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-C
Q 048290            5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-C   83 (253)
Q Consensus         5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~   83 (253)
                      ++.|+|++|.++|.+|..+. .+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+ +
T Consensus       420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            77899999999999999998 899999999999999999999999999999999999999999999999999999998 2


Q ss_pred             CCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCCCCCCCCCCCCCCccccCCcCCCCCccCC
Q 048290           84 SNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLA  163 (253)
Q Consensus        84 n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~~iP~~~~l~~~~~~~~~gN~~LCg~~~~  163 (253)
                      ++.                           ++|.+|..++.+.                 .......+.+|+++||.|..
T Consensus       499 ~N~---------------------------l~g~iP~~l~~~~-----------------~~~~~l~~~~N~~lc~~p~l  534 (623)
T PLN03150        499 GNS---------------------------LSGRVPAALGGRL-----------------LHRASFNFTDNAGLCGIPGL  534 (623)
T ss_pred             CCc---------------------------ccccCChHHhhcc-----------------ccCceEEecCCccccCCCCC
Confidence            222                           3777777664321                 11223458899999998766


Q ss_pred             CCCC
Q 048290          164 NKCP  167 (253)
Q Consensus       164 ~~C~  167 (253)
                      ..|.
T Consensus       535 ~~C~  538 (623)
T PLN03150        535 RACG  538 (623)
T ss_pred             CCCc
Confidence            6774

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.57  E-value=1.5e-14  Score=142.86  Aligned_cols=148  Identities=24%  Similarity=0.310  Sum_probs=89.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCC-----------------------CCCCEEe
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-----------------------GFIQVLD   58 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l-----------------------~~L~~Ld   58 (253)
                      +++|+.|+|++|++++.+|..+. .++.|+.|+|++|.++|.+|..+..+                       ++|+.||
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~  481 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD  481 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence            44555566666666555555555 55555555555555555554444433                       4556666


Q ss_pred             ccCCccCCCcChhhhccccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeeccccccccccccee
Q 048290           59 LSLNIISGKIPKCFNNFSAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVR  129 (253)
Q Consensus        59 Ls~N~l~g~ip~~l~~l~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~  129 (253)
                      |++|++++.+|..+.++++|+.|+  .|.+    .+.+|..       ..+.+.+|.       ++|.+|..+..++.|+
T Consensus       482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~p~~~~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~L~  550 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLSELMQLKLSENKL----SGEIPDELSSCKKLVSLDLSHNQ-------LSGQIPASFSEMPVLS  550 (968)
T ss_pred             CcCCccCCccChhhhhhhccCEEECcCCcc----eeeCChHHcCccCCCEEECCCCc-------ccccCChhHhCcccCC
Confidence            666666666666666777777666  3333    2234433       223344444       6888999999999999


Q ss_pred             eeccCC-----CCCCC-CCCCCCCccccCCcCCCCCcc
Q 048290          130 CLDLSR-----KIPLG-TQLQSFNASVYAGNLELCGLP  161 (253)
Q Consensus       130 ~LdLS~-----~iP~~-~~l~~~~~~~~~gN~~LCg~~  161 (253)
                      .|||++     .+|.. ..+..+....+.+|+..+..|
T Consensus       551 ~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             EEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999987     56754 345566666778887665333

>PLN03150 hypothetical protein; Provisional

Probab=99.32  E-value=3.9e-12  Score=119.86  Aligned_cols=74  Identities=34%  Similarity=0.573  Sum_probs=70.2

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNF   75 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l   75 (253)
                      ++++|+.|+|++|+++|.+|..++ .+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence            368899999999999999999998 89999999999999999999999999999999999999999999988764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=1.6e-13  Score=106.34  Aligned_cols=140  Identities=20%  Similarity=0.241  Sum_probs=106.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      ++.++.|-||+|+++ .+|+.+. .+.+|++|++.+|++. .+|.+++.+++|+.|+++-|++. ..|..|++++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            456778999999999 6888998 8999999999999998 78999999999999999999998 899999999999999


Q ss_pred             c--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCC
Q 048290           82 R--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFN  147 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~  147 (253)
                      +  .|++..   ..+|..       ..+++.+|-        -..+|..++.+++|+.|.+..    .+|.. +.+..+.
T Consensus       108 dltynnl~e---~~lpgnff~m~tlralyl~dnd--------fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr  176 (264)
T KOG0617|consen  108 DLTYNNLNE---NSLPGNFFYMTTLRALYLGDND--------FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR  176 (264)
T ss_pred             hcccccccc---ccCCcchhHHHHHHHHHhcCCC--------cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence            9  565532   223332       122344443        455788888888888887765    55654 4455555


Q ss_pred             ccccCCcCC
Q 048290          148 ASVYAGNLE  156 (253)
Q Consensus       148 ~~~~~gN~~  156 (253)
                      .....||..
T Consensus       177 elhiqgnrl  185 (264)
T KOG0617|consen  177 ELHIQGNRL  185 (264)
T ss_pred             HHhccccee
Confidence            555667743

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.13  E-value=6.3e-12  Score=113.24  Aligned_cols=80  Identities=21%  Similarity=0.150  Sum_probs=53.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      |.++++|+|+.|+++..--.|+. +|+.|+.|+||+|.+...-+..+..+++|+.||||+|+++.--|..|..+.+|+.|
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             ecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            45667777777777655556666 67777777777777776666667777777777777777775555666666655555


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       347 n  347 (873)
T KOG4194|consen  347 N  347 (873)
T ss_pred             c
Confidence            5

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=8.7e-11  Score=76.81  Aligned_cols=61  Identities=31%  Similarity=0.355  Sum_probs=53.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCcc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNII   64 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l   64 (253)
                      ++|+.|++++|+++...+..+. ++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999954445666 899999999999999977778899999999999999975

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.04  E-value=6.3e-11  Score=106.90  Aligned_cols=155  Identities=20%  Similarity=0.080  Sum_probs=113.5

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +|++|+.||||+|.|...-++.+. -+++|++|+|++|+++..-+..|..|..|+.|.|++|+++..-...|..+++|+.
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK  369 (873)
T ss_pred             ccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence            478999999999999987787777 7999999999999999888889999999999999999999777789999999999


Q ss_pred             cc--CCCCCcc------cccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC-CCCCC--CCCCC--CC
Q 048290           81 ER--CSNPTIG------FAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-KIPLG--TQLQS--FN  147 (253)
Q Consensus        81 L~--~n~~~~~------~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-~iP~~--~~l~~--~~  147 (253)
                      |+  +|.+...      .+..+|.-..+.+.+|.       ++.+.-..|..+..|++|||.+ .|-.-  ..|..  +.
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-------lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk  442 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-------LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELK  442 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecCce-------eeecchhhhccCcccceecCCCCcceeecccccccchhh
Confidence            99  4554210      01112222344555555       4555666899999999999987 22111  12322  22


Q ss_pred             ccccCCcCCCCCccCC
Q 048290          148 ASVYAGNLELCGLPLA  163 (253)
Q Consensus       148 ~~~~~gN~~LCg~~~~  163 (253)
                      ..-+..-..||.+++.
T Consensus       443 ~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  443 ELVMNSSSFLCDCQLK  458 (873)
T ss_pred             hhhhcccceEEeccHH
Confidence            3335555678876544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.03  E-value=1.2e-11  Score=96.09  Aligned_cols=118  Identities=21%  Similarity=0.234  Sum_probs=95.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC-CCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS-GKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~   80 (253)
                      +.+|+.|++++|++. .+|..+. ++++|+.|+++-|++. ..|..|+.++.|+.|||.+|+++ ..+|..|..++.|+.
T Consensus        55 l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             hhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            678999999999998 7999998 8999999999999997 78999999999999999999997 467988999999998


Q ss_pred             cc--CCCCCcccccccccC-CC---cc---cccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER--CSNPTIGFAKLIFVP-AG---TG---YYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~--~n~~~~~~~~~ip~~-~~---l~---~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+  +|.+.     .+|.. +.   ++   +.+|-        --..|..++.++.|+.|.+.+
T Consensus       132 lyl~dndfe-----~lp~dvg~lt~lqil~lrdnd--------ll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  132 LYLGDNDFE-----ILPPDVGKLTNLQILSLRDND--------LLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             HHhcCCCcc-----cCChhhhhhcceeEEeeccCc--------hhhCcHHHHHHHHHHHHhccc
Confidence            88  55552     24444 22   21   22221        234788999999999999887

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.01  E-value=6.7e-11  Score=107.68  Aligned_cols=147  Identities=20%  Similarity=0.130  Sum_probs=115.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +.+|..+|||.|.+. .+|..+. ++.+|+.|+||+|+++ .+.-..+.+.+|..|+||.|+++ .+|+++..++.|+.|
T Consensus       221 l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence            567888999999998 7899998 8999999999999998 56666778889999999999998 999999999999998


Q ss_pred             c--CCCCCcccccccccC-CCcc------cccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCC
Q 048290           82 R--CSNPTIGFAKLIFVP-AGTG------YYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFN  147 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~-~~l~------~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~  147 (253)
                      .  +|.+.   ...||.. +.+.      ..+|.        -...|+.+..+..|+.|.|++    .+|++ -.+..+.
T Consensus       297 y~n~NkL~---FeGiPSGIGKL~~Levf~aanN~--------LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  297 YANNNKLT---FEGIPSGIGKLIQLEVFHAANNK--------LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLK  365 (1255)
T ss_pred             HhccCccc---ccCCccchhhhhhhHHHHhhccc--------cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcc
Confidence            8  44442   3346665 3321      23333        566889999999999999998    66776 3456667


Q ss_pred             ccccCCcCCCCCccCC
Q 048290          148 ASVYAGNLELCGLPLA  163 (253)
Q Consensus       148 ~~~~~gN~~LCg~~~~  163 (253)
                      ...+..||.|.-+|.+
T Consensus       366 vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  366 VLDLRENPNLVMPPKP  381 (1255)
T ss_pred             eeeccCCcCccCCCCc
Confidence            7778889988876654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.00  E-value=9e-11  Score=106.83  Aligned_cols=128  Identities=23%  Similarity=0.195  Sum_probs=85.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +..|+.||||+|++. ..|..+- ..+++-+|+||+|++..+.-+-|.+|+.|-+||||+|++. .+|..+..+..|++|
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            567888999999998 7888887 7888999999999998443344778999999999999997 788888888888888


Q ss_pred             c-CCCCCccc-ccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R-CSNPTIGF-AKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~-~n~~~~~~-~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      . ++|...-+ -..+|....+...+-.   +.......+|..+..+.+|..+|||+
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms---~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMS---NTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcc---cccchhhcCCCchhhhhhhhhccccc
Confidence            8 55432211 2234443222110000   00012234566666666677777766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.89  E-value=2.2e-10  Score=108.03  Aligned_cols=125  Identities=24%  Similarity=0.225  Sum_probs=93.1

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      .+.|+.|.+.+|+++...=+.+. +.++|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++.++..|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            34678899999999987666666 7999999999999997444445889999999999999998 899999999999999


Q ss_pred             c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC------CCCCCCCCCCCCccccCCc
Q 048290           82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR------KIPLGTQLQSFNASVYAGN  154 (253)
Q Consensus        82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~------~iP~~~~l~~~~~~~~~gN  154 (253)
                      . .+|.                            .-..| .+..++.|+.+|+|+      .+|..-...++....+.||
T Consensus       436 ~ahsN~----------------------------l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  436 RAHSNQ----------------------------LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hhcCCc----------------------------eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence            8 3332                            11234 566777888888887      3333322244555557788


Q ss_pred             CCC
Q 048290          155 LEL  157 (253)
Q Consensus       155 ~~L  157 (253)
                      +++
T Consensus       487 ~~l  489 (1081)
T KOG0618|consen  487 TRL  489 (1081)
T ss_pred             ccc
Confidence            753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.78  E-value=2.2e-09  Score=93.30  Aligned_cols=118  Identities=21%  Similarity=0.267  Sum_probs=60.7

Q ss_pred             ECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccccCCCCCc
Q 048290            9 DLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTI   88 (253)
Q Consensus         9 ~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~~n~~~~   88 (253)
                      ++++|.++ .+|..+. .+++|..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|.++-.+..++.+-      
T Consensus       418 ~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll------  487 (565)
T KOG0472|consen  418 VLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLL------  487 (565)
T ss_pred             HhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHH------
Confidence            34444443 4444444 4555555555555554 45555555555555555555554 4555444444444332      


Q ss_pred             ccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCccccCCcCC
Q 048290           89 GFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVYAGNLE  156 (253)
Q Consensus        89 ~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~~gN~~  156 (253)
                                   .+++.       +....|+.+.++..|+.|||.+    .||.+ +.+.++......|||.
T Consensus       488 -------------as~nq-------i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  488 -------------ASNNQ-------IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             -------------hcccc-------ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence                         11122       2333334467777777777776    56655 4555555555667764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.73  E-value=3.5e-09  Score=92.07  Aligned_cols=103  Identities=27%  Similarity=0.304  Sum_probs=86.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|..|+|++|-+. .+|.+++ .+..|+.|+++.|+|. .+|..+-.+..++.+-.++|++...-|+.+.+|.+|.+|
T Consensus       434 l~kLt~L~L~NN~Ln-~LP~e~~-~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL  510 (565)
T KOG0472|consen  434 LQKLTFLDLSNNLLN-DLPEEMG-SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL  510 (565)
T ss_pred             hhcceeeecccchhh-hcchhhh-hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence            578999999999998 7999999 8999999999999997 788877667777777777799986666669999999999


Q ss_pred             c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      + .|+-                            -..+|..++++++|++|++++
T Consensus       511 DL~nNd----------------------------lq~IPp~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  511 DLQNND----------------------------LQQIPPILGNMTNLRHLELDG  537 (565)
T ss_pred             ccCCCc----------------------------hhhCChhhccccceeEEEecC
Confidence            8 3332                            345788999999999999988

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=7.4e-09  Score=67.55  Aligned_cols=55  Identities=31%  Similarity=0.429  Sum_probs=50.8

Q ss_pred             CCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290           28 QNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus        28 ~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|+.++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~   55 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLD   55 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEE
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEe
Confidence            5799999999999977677899999999999999999977788999999999998

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.70  E-value=1.5e-08  Score=80.20  Aligned_cols=76  Identities=32%  Similarity=0.330  Sum_probs=25.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhh-hccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF-NNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~   80 (253)
                      +.+++.|+|++|.|+ .+. .++..+.+|+.|+|++|.++. + +.+..++.|+.|++++|+++ .++..+ ..+++|+.
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            456899999999998 454 454347899999999999985 3 35788999999999999998 565445 47899999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus        93 L~   94 (175)
T PF14580_consen   93 LY   94 (175)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=2.8e-09  Score=96.13  Aligned_cols=116  Identities=19%  Similarity=0.201  Sum_probs=90.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +..|++|||+.|+++ .+|..+. .|+ |++|.+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|
T Consensus       120 L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l  194 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhHHHHhhhccchhh-cCChhhh-cCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH
Confidence            567889999999998 7888887 455 899999999997 78999998899999999999998 889999999999998


Q ss_pred             c--CCCCCcccccccccC-C-----CcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R--CSNPTIGFAKLIFVP-A-----GTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~-~-----~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +  .|++..     +|++ .     .++++.|.        ...+|-.|.+|+.|++|-|.+
T Consensus       195 ~vrRn~l~~-----lp~El~~LpLi~lDfScNk--------is~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  195 NVRRNHLED-----LPEELCSLPLIRLDFSCNK--------ISYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             HHhhhhhhh-----CCHHHhCCceeeeecccCc--------eeecchhhhhhhhheeeeecc
Confidence            8  555532     4443 2     23344444        455777788888888887766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.65  E-value=4e-09  Score=99.65  Aligned_cols=82  Identities=26%  Similarity=0.401  Sum_probs=73.5

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +.++|++|+|++|++. .+|.....+++.|+.|+||+|+++ .+|..+..+..|+.|...+|++. ..| .+..+++|+.
T Consensus       381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            3578999999999998 788776668999999999999998 78999999999999999999998 778 8999999999


Q ss_pred             cc--CCCC
Q 048290           81 ER--CSNP   86 (253)
Q Consensus        81 L~--~n~~   86 (253)
                      +|  .|++
T Consensus       457 lDlS~N~L  464 (1081)
T KOG0618|consen  457 LDLSCNNL  464 (1081)
T ss_pred             Eecccchh
Confidence            99  5555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=4.8e-08  Score=77.37  Aligned_cols=77  Identities=27%  Similarity=0.262  Sum_probs=36.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccc-cCCCCCCEEeccCCccCCCcC-hhhhccccCc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQL-CHLGFIQVLDLSLNIISGKIP-KCFNNFSAMT   79 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~-~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~   79 (253)
                      +.+|+.|||++|.++ .++ .+. .++.|++|++++|+++. +++.+ ..+++|+.|+|++|++...-- ..+..+++|+
T Consensus        41 l~~L~~L~Ls~N~I~-~l~-~l~-~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   41 LDKLEVLDLSNNQIT-KLE-GLP-GLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             -TT--EEE-TTS--S---T-T-----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hcCCCEEECCCCCCc-ccc-Ccc-ChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            568999999999999 565 365 79999999999999985 54444 468999999999999974322 5677888888


Q ss_pred             ccc
Q 048290           80 YER   82 (253)
Q Consensus        80 ~L~   82 (253)
                      .|+
T Consensus       117 ~L~  119 (175)
T PF14580_consen  117 VLS  119 (175)
T ss_dssp             EEE
T ss_pred             eee
Confidence            887

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.52  E-value=1.8e-08  Score=84.77  Aligned_cols=76  Identities=24%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      ++.|+.||||+|.|+ .+..++. -+|.++.|++++|.+.. + ..+..+++|+.||||+|.++ .+..+-..+.+++.|
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            356889999999998 7888886 78999999999999973 3 44889999999999999998 555554555666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      .
T Consensus       358 ~  358 (490)
T KOG1259|consen  358 K  358 (490)
T ss_pred             e
Confidence            5

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.47  E-value=1.1e-07  Score=82.64  Aligned_cols=81  Identities=21%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|+.|+|++|++++.-+.+|. ++..++.|.|..|++...-...|.++..|+.|+|.+|+++-.-|..|..+.+|.+
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhc-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            367899999999999987788887 8999999999999998665667889999999999999999888888888888888


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      ++
T Consensus       351 l~  352 (498)
T KOG4237|consen  351 LN  352 (498)
T ss_pred             ee
Confidence            77

>PLN03210 Resistant to P

Probab=98.46  E-value=8e-07  Score=89.71  Aligned_cols=78  Identities=23%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|+|+++..-+.+|. +. .+++|+.|+|++|..-..+|..++++++|+.|++++|..-+.+|..+ ++++|+.|
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L  709 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL  709 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence            57788888888765556774 55 68888888888877666788888888888888888865555777654 56666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       710 ~  710 (1153)
T PLN03210        710 N  710 (1153)
T ss_pred             e
Confidence            5

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.42  E-value=7.7e-07  Score=89.81  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=34.3

Q ss_pred             ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      |+.|++.+|.+. .+|..+  ...+|+.|+|++|++. .+|..+..+++|+.|+|+++..-+.+|. +..+++|+.|+
T Consensus       591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~  663 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK  663 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence            444444444443 344443  2445555555555554 3444445555555555554433334442 44445555544

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.41  E-value=5e-08  Score=84.70  Aligned_cols=129  Identities=20%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccC-CccCCCcChhhhccccCcccc-
Q 048290            5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSL-NIISGKIPKCFNNFSAMTYER-   82 (253)
Q Consensus         5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~-   82 (253)
                      .+.++|..|+|+...|..|. .+++|+.|||++|+|+-+-|.+|.++.+|..|-+-+ |+|+...-+.|+++.+|+.|. 
T Consensus        69 tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcccCChhhcc-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            45667777777733333344 677777777777777766677777777766554433 777633335677777776655 


Q ss_pred             -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290           83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL  155 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~  155 (253)
                       .+.                            +.-...+.|..++++..|.+-.    .|+.+  ..+........+-||
T Consensus       148 Nan~----------------------------i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANH----------------------------INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             Chhh----------------------------hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence             111                            1333445566666666655543    33432  122333444577788


Q ss_pred             CCCCccC
Q 048290          156 ELCGLPL  162 (253)
Q Consensus       156 ~LCg~~~  162 (253)
                      +.|.+-+
T Consensus       200 ~icdCnL  206 (498)
T KOG4237|consen  200 FICDCNL  206 (498)
T ss_pred             ccccccc
Confidence            8875433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.40  E-value=7.8e-07  Score=85.36  Aligned_cols=55  Identities=27%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS   65 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~   65 (253)
                      +|+.|++++|+++ .+|..+.   .+|+.|+|++|++. .+|..+.  ++|+.|+|++|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence            5666666666666 4554433   24555555555554 3444332  24444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.35  E-value=1.1e-06  Score=84.39  Aligned_cols=69  Identities=30%  Similarity=0.394  Sum_probs=41.5

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +|+.|+|++|+++ .+|..+.   .+|+.|+|++|+|+ .+|..+.  .+|+.|+|++|++. .+|..+.  ++|+.|+
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            4666777777776 4665543   36777777777776 3555442  35667777777766 5565443  2455555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=5.4e-07  Score=54.61  Aligned_cols=36  Identities=39%  Similarity=0.517  Sum_probs=19.2

Q ss_pred             CccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290           29 NLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS   65 (253)
Q Consensus        29 ~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~   65 (253)
                      +|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34445555555656666555555

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=5.3e-07  Score=80.59  Aligned_cols=39  Identities=26%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             ccccccccceeeeccCC----CCCCCCCCCCCCccccCCcCCC
Q 048290          119 NEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAGNLEL  157 (253)
Q Consensus       119 p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~gN~~L  157 (253)
                      +..++.+..++.|++++    .++....+..+....+.+|...
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cchhccccccceeccccccccccccccccCccCEEeccCcccc
Confidence            67777888899999988    4554445555666666666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.25  E-value=1.2e-06  Score=84.12  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=37.1

Q ss_pred             CcceEEECCCCcCccCCCh---hHh-------------hcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC
Q 048290            3 SQLRVLDLGKNAFFGEIPT---WTG-------------ESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG   66 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~---~~~-------------~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g   66 (253)
                      ++|+.|+|++|++++ +|.   .+.             .-..+|+.|+|++|+|++ +|...   .+|+.|++++|+++ 
T Consensus       302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp---~~L~~L~Ls~N~L~-  375 (788)
T PRK15387        302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLP---SELYKLWAYNNRLT-  375 (788)
T ss_pred             cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCC---cccceehhhccccc-
Confidence            677888888888875 332   111             001368888888888884 55432   34555666666665 


Q ss_pred             CcCh
Q 048290           67 KIPK   70 (253)
Q Consensus        67 ~ip~   70 (253)
                      .+|.
T Consensus       376 ~LP~  379 (788)
T PRK15387        376 SLPA  379 (788)
T ss_pred             cCcc
Confidence            3553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=8.6e-07  Score=53.71  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=32.9

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG   42 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g   42 (253)
                      ++|++|++++|+|+ .+|+.+. +|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCCC
Confidence            57999999999999 6888888 89999999999999983

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.21  E-value=5.5e-07  Score=77.77  Aligned_cols=61  Identities=23%  Similarity=0.013  Sum_probs=30.9

Q ss_pred             cceEEECCCCcCcc------CCChhHhhcCCCccEEEccCCcCcccCcccccCCCC---CCEEeccCCccC
Q 048290            4 QLRVLDLGKNAFFG------EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGF---IQVLDLSLNIIS   65 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g------~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~---L~~LdLs~N~l~   65 (253)
                      +|+.|+++++.+.+      .++..+. .+++|+.|++++|.+.+..+..+..+..   |+.|++++|+++
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHH-hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            45555555555541      1223343 4555566666655555444444444433   555566555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.17  E-value=5.7e-07  Score=77.66  Aligned_cols=80  Identities=24%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCC---ccEEEccCCcCcc----cCcccccCC-CCCCEEeccCCccCCCc----C
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQN---LIVLSLKSNKFHG----NIPYQLCHL-GFIQVLDLSLNIISGKI----P   69 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~---L~~L~L~~N~l~g----~ip~~~~~l-~~L~~LdLs~N~l~g~i----p   69 (253)
                      +++|+.|++++|.+.+..+..+. .+.+   |+.|++++|++++    .+...+..+ ++|+.|++++|.+++..    +
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            56899999999999876777776 5666   9999999999873    334456667 89999999999998543    3


Q ss_pred             hhhhccccCcccc
Q 048290           70 KCFNNFSAMTYER   82 (253)
Q Consensus        70 ~~l~~l~~L~~L~   82 (253)
                      ..+..+..|+.|+
T Consensus       159 ~~~~~~~~L~~L~  171 (319)
T cd00116         159 KALRANRDLKELN  171 (319)
T ss_pred             HHHHhCCCcCEEE
Confidence            4556667788888

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=9e-07  Score=66.60  Aligned_cols=77  Identities=18%  Similarity=0.327  Sum_probs=62.9

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ..|+..+|++|.|. .+|+.+....+.+++|+|++|.++ .+|.++..|+.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            35667789999988 677777645668899999999997 78888999999999999999988 7777777788887777

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.98  E-value=5.1e-06  Score=81.09  Aligned_cols=79  Identities=32%  Similarity=0.371  Sum_probs=58.7

Q ss_pred             CCcceEEECCCCc--CccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCc
Q 048290            2 CSQLRVLDLGKNA--FFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMT   79 (253)
Q Consensus         2 l~~L~~L~Ls~N~--l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~   79 (253)
                      +++|+.|-+..|.  +. .++..+...++.|++|||++|.=-+.+|..++.|-+|++|+|++..++ .+|..++++..|.
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            4567777777775  33 455554436888888888877666678888888888888888888887 7788888888888


Q ss_pred             ccc
Q 048290           80 YER   82 (253)
Q Consensus        80 ~L~   82 (253)
                      +|+
T Consensus       622 ~Ln  624 (889)
T KOG4658|consen  622 YLN  624 (889)
T ss_pred             eec
Confidence            777

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.96  E-value=5e-06  Score=79.84  Aligned_cols=74  Identities=19%  Similarity=0.251  Sum_probs=56.5

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .+|+.|+|++|+|+ .+|..    .++|+.|++++|+|++ +|...   .+|+.|+|++|+++ .+|..+.++++|+.++
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             cccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            46788888888888 46643    3578889999999884 66543   46778889999988 7888888888888888


Q ss_pred             --CCCC
Q 048290           83 --CSNP   86 (253)
Q Consensus        83 --~n~~   86 (253)
                        .|.+
T Consensus       452 Ls~N~L  457 (788)
T PRK15387        452 LEGNPL  457 (788)
T ss_pred             CCCCCC
Confidence              4444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.94  E-value=4.8e-06  Score=81.26  Aligned_cols=79  Identities=27%  Similarity=0.363  Sum_probs=72.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      ++.|++|||++|.=-+.+|..++ +|.+|++|+|++..++ .+|..+.+|..|.+||+..+.-...+|.....+++|++|
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            68899999999887779999999 8999999999999998 899999999999999999988766778888889999988


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      .
T Consensus       648 ~  648 (889)
T KOG4658|consen  648 R  648 (889)
T ss_pred             E
Confidence            7

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.92  E-value=6.4e-06  Score=73.65  Aligned_cols=75  Identities=33%  Similarity=0.398  Sum_probs=59.9

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +|+.|++++|.+. .+|..+. .+++|+.|++++|+++ .+|...+.++.|+.|++++|+++ .+|........|..+.
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~  215 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD  215 (394)
T ss_pred             hcccccccccchh-hhhhhhh-ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence            7888999999988 6777777 7899999999999987 66776668888888999999888 7777655555566666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.75  E-value=3.2e-06  Score=76.78  Aligned_cols=78  Identities=32%  Similarity=0.502  Sum_probs=54.2

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-   82 (253)
                      .|..||.+.|.+. .+|..++ .+.+|+.|.++.|++. .+|++++.| .|..||+|.|+++ .||.+|.+|+.|++|. 
T Consensus       167 tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  167 TLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             hHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence            3445555555555 4555555 5666666666666665 456666644 4778999999998 9999999999999988 


Q ss_pred             CCCC
Q 048290           83 CSNP   86 (253)
Q Consensus        83 ~n~~   86 (253)
                      .||.
T Consensus       242 enNP  245 (722)
T KOG0532|consen  242 ENNP  245 (722)
T ss_pred             ccCC
Confidence            5554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.72  E-value=6.2e-07  Score=83.43  Aligned_cols=60  Identities=28%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC
Q 048290            5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP   69 (253)
Q Consensus         5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip   69 (253)
                      |...+.++|.+. .....+. -++.|+.|+|++|+++..  ..+..|..|+.|||++|.+. .+|
T Consensus       166 L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp  225 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVP  225 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccc
Confidence            445566667766 4555555 566777777777777632  25666777777777777776 444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.72  E-value=3.1e-06  Score=63.76  Aligned_cols=101  Identities=24%  Similarity=0.254  Sum_probs=75.1

Q ss_pred             cceEEECCCCcCccCCChhHhh--cCCCccEEEccCCcCcccCcccccC-CCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGE--SLQNLIVLSLKSNKFHGNIPYQLCH-LGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~--~l~~L~~L~L~~N~l~g~ip~~~~~-l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      .+..+||++..+- .+++....  ....|...+|++|.|. ..|+.|.. .+-++.|+|++|.++ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            4678999999885 67765541  3456667799999998 56666654 458899999999999 89999999999999


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      ++ .+|.                            -...|..+..|.++..||.-+
T Consensus       105 lNl~~N~----------------------------l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  105 LNLRFNP----------------------------LNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             cccccCc----------------------------cccchHHHHHHHhHHHhcCCC
Confidence            98 4333                            122455556677888888755

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.63  E-value=1.2e-05  Score=68.20  Aligned_cols=74  Identities=23%  Similarity=0.262  Sum_probs=42.6

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +.++.|++|+|.+. .+.. +. .+++|+.|||++|.++ .+..+-..+.+.+.|.|+.|.+. .+ ..++.+-+|..|+
T Consensus       307 Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLD  380 (490)
T KOG1259|consen  307 PKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLD  380 (490)
T ss_pred             cceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheecc
Confidence            56777888888877 3433 55 5778888888888776 33333344455555555555543 11 2344444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=5.7e-05  Score=66.80  Aligned_cols=81  Identities=26%  Similarity=0.240  Sum_probs=49.4

Q ss_pred             CCcceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccc-cCCCCCCEEeccCCccCCCc-ChhhhccccC
Q 048290            2 CSQLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQL-CHLGFIQVLDLSLNIISGKI-PKCFNNFSAM   78 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~-~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L   78 (253)
                      |++++.||||.|-|+...|- .|...|++|+.|+|+.|++.-.+.... ..+++|+.|.|+.+.|+..- -.....+++|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            66777777777777643331 233367777777777777764443322 34566777777777776332 2344556667


Q ss_pred             cccc
Q 048290           79 TYER   82 (253)
Q Consensus        79 ~~L~   82 (253)
                      ..|+
T Consensus       225 ~~L~  228 (505)
T KOG3207|consen  225 EVLY  228 (505)
T ss_pred             HHhh
Confidence            6666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.28  E-value=3.8e-05  Score=71.93  Aligned_cols=77  Identities=23%  Similarity=0.274  Sum_probs=40.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~   80 (253)
                      |.+|++|||++|.++ .+|..-..++. |+.|.+++|.++..  ..+.+|.+|+.|||++|-+++.-. .-+..+.+|+.
T Consensus       208 l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  208 LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV  283 (1096)
T ss_pred             cccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence            445555555555555 44432111222 55555555555432  235567777777777777664432 23455566666


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |.
T Consensus       284 L~  285 (1096)
T KOG1859|consen  284 LW  285 (1096)
T ss_pred             Hh
Confidence            65

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.21  E-value=0.00043  Score=55.52  Aligned_cols=76  Identities=21%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~   82 (253)
                      ....+||++|.+. .++ .+. .++.|.+|.|.+|+++..-|.--.-+++|+.|.|.+|++...-. .-+..++.|+.|.
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hcc-cCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4567888888876 444 243 67888888888888885444433445678888888888762111 2355566666655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.19  E-value=0.00014  Score=65.71  Aligned_cols=75  Identities=32%  Similarity=0.337  Sum_probs=52.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|++.+|+|.. +...+. .+++|++|+|++|.++...  .+..++.|+.|++++|.++ .++ .+..+..|+.+
T Consensus        94 ~~~l~~l~l~~n~i~~-i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-IENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchhh-cccchh-hhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcc
Confidence            5678888888888874 443344 6888888888888887553  3456666888888888886 333 34556666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       168 ~  168 (414)
T KOG0531|consen  168 D  168 (414)
T ss_pred             c
Confidence            6

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00017  Score=63.94  Aligned_cols=85  Identities=21%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCccc-CcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGN-IPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|+.|+|+.|++.-.........+++|..|.|+.+.|+-. +-.....+++|..|+|..|...+.-......+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            688999999999987544443333577888888888888732 2223456778888888888643333444556667777


Q ss_pred             cc--CCCC
Q 048290           81 ER--CSNP   86 (253)
Q Consensus        81 L~--~n~~   86 (253)
                      |+  +|++
T Consensus       251 LdLs~N~l  258 (505)
T KOG3207|consen  251 LDLSNNNL  258 (505)
T ss_pred             ccccCCcc
Confidence            77  4444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.04  E-value=0.00028  Score=67.45  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=60.4

Q ss_pred             CcceEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCccc-CcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            3 SQLRVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGN-IPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      .+|++||+++.... ...|..++.-||+|+.|.+++-.+... .-.-..++++|..||+|+.+++. + ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence            47899999997654 234566776789999999999777532 23445789999999999999983 3 67888999988


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |.
T Consensus       200 L~  201 (699)
T KOG3665|consen  200 LS  201 (699)
T ss_pred             Hh
Confidence            86

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.96  E-value=0.00061  Score=56.59  Aligned_cols=78  Identities=26%  Similarity=0.294  Sum_probs=44.2

Q ss_pred             CCcceEEECCCC--cCccCCChhHhhcCCCccEEEccCCcCcccCccc---ccCCCCCCEEeccCCccCCCcC---hhhh
Q 048290            2 CSQLRVLDLGKN--AFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQ---LCHLGFIQVLDLSLNIISGKIP---KCFN   73 (253)
Q Consensus         2 l~~L~~L~Ls~N--~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~---~~~l~~L~~LdLs~N~l~g~ip---~~l~   73 (253)
                      |++|+.|++|.|  ++++.++...- .+++|++|+|++|+++-  +..   +..+.+|..||+.++.-++.--   ..|.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             cchhhhhcccCCcccccccceehhh-hCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            456667777777  55555555444 56777777777777652  333   3344555666666665543211   2344


Q ss_pred             ccccCcccc
Q 048290           74 NFSAMTYER   82 (253)
Q Consensus        74 ~l~~L~~L~   82 (253)
                      -+++|++|+
T Consensus       141 ll~~L~~LD  149 (260)
T KOG2739|consen  141 LLPSLKYLD  149 (260)
T ss_pred             Hhhhhcccc
Confidence            556666665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.89  E-value=0.00042  Score=35.21  Aligned_cols=19  Identities=42%  Similarity=0.684  Sum_probs=9.0

Q ss_pred             CCEEeccCCccCCCcChhhh
Q 048290           54 IQVLDLSLNIISGKIPKCFN   73 (253)
Q Consensus        54 L~~LdLs~N~l~g~ip~~l~   73 (253)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444555555554 4444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.84  E-value=0.00051  Score=34.86  Aligned_cols=20  Identities=30%  Similarity=0.494  Sum_probs=10.7

Q ss_pred             ccEEEccCCcCcccCcccccC
Q 048290           30 LIVLSLKSNKFHGNIPYQLCH   50 (253)
Q Consensus        30 L~~L~L~~N~l~g~ip~~~~~   50 (253)
                      |++|+|++|+|+ .+|++|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            555555555555 45554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.81  E-value=0.0005  Score=62.07  Aligned_cols=75  Identities=25%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChh-hhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKC-FNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~   80 (253)
                      |++|++|||++|+|+...+  +. .++.|+.|++++|.++..  ..+..+..|+.+++++|.+...-+ . ...+..++.
T Consensus       117 ~~~L~~L~ls~N~I~~i~~--l~-~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~  190 (414)
T KOG0531|consen  117 LVNLQVLDLSFNKITKLEG--LS-TLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEE  190 (414)
T ss_pred             hhcchheeccccccccccc--hh-hccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHH
Confidence            6889999999999995444  44 688899999999999843  456679999999999999984443 2 466666766


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      +.
T Consensus       191 l~  192 (414)
T KOG0531|consen  191 LD  192 (414)
T ss_pred             Hh
Confidence            66

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.27  E-value=0.0048  Score=49.65  Aligned_cols=80  Identities=20%  Similarity=0.090  Sum_probs=60.5

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-cccccCCCCCCEEeccCCccCCCcC---hhhhcccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLCHLGFIQVLDLSLNIISGKIP---KCFNNFSA   77 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~   77 (253)
                      +..|..|.|++|+|+. |.+.+..-+++|..|.|.+|++...- -.-+..++.|++|.+-+|..+..--   -.+..+++
T Consensus        63 l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~  141 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS  141 (233)
T ss_pred             ccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence            5789999999999995 55456546789999999999997321 1236678899999999998873321   24567788


Q ss_pred             Ccccc
Q 048290           78 MTYER   82 (253)
Q Consensus        78 L~~L~   82 (253)
                      |+.||
T Consensus       142 l~~LD  146 (233)
T KOG1644|consen  142 LRTLD  146 (233)
T ss_pred             ceEee
Confidence            88887

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.0011  Score=55.82  Aligned_cols=78  Identities=21%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc-ccccCCCCCCEEeccCCccCCCcCh-----hhhcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP-YQLCHLGFIQVLDLSLNIISGKIPK-----CFNNF   75 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~-----~l~~l   75 (253)
                      ++.|++|.||-|+|+..-|  +. .|++|+.|+|+.|.|...-- .-+.++++|+.|.|..|.-.|.-+.     .+.-|
T Consensus        40 Mp~lEVLsLSvNkIssL~p--l~-rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L  116 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAP--LQ-RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL  116 (388)
T ss_pred             cccceeEEeeccccccchh--HH-HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence            6789999999999994433  44 79999999999999974321 2367899999999999999888763     46678


Q ss_pred             ccCcccc
Q 048290           76 SAMTYER   82 (253)
Q Consensus        76 ~~L~~L~   82 (253)
                      ++|+.||
T Consensus       117 PnLkKLD  123 (388)
T KOG2123|consen  117 PNLKKLD  123 (388)
T ss_pred             ccchhcc
Confidence            8888887

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.74  E-value=0.0043  Score=51.61  Aligned_cols=75  Identities=19%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCC--cCcccCcccccCCCCCCEEeccCCccCCCcChhh---hcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSN--KFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF---NNFSA   77 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N--~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l---~~l~~   77 (253)
                      ..|+.|.+.+-.++. +- .+. .|++|+.|.++.|  +.++.++.-...+++|++|+|++|++.  ++..+   ..+.+
T Consensus        43 ~~le~ls~~n~gltt-~~-~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~n  117 (260)
T KOG2739|consen   43 VELELLSVINVGLTT-LT-NFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELEN  117 (260)
T ss_pred             cchhhhhhhccceee-cc-cCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcc
Confidence            456667777766662 22 233 6889999999999  666666666667799999999999997  24433   44445


Q ss_pred             Ccccc
Q 048290           78 MTYER   82 (253)
Q Consensus        78 L~~L~   82 (253)
                      |..|+
T Consensus       118 L~~Ld  122 (260)
T KOG2739|consen  118 LKSLD  122 (260)
T ss_pred             hhhhh
Confidence            55555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.0054  Score=52.29  Aligned_cols=80  Identities=23%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             CCcceEEECCCCcCccC--CChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccC
Q 048290            2 CSQLRVLDLGKNAFFGE--IPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAM   78 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~--~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L   78 (253)
                      ++.++.|||..|.|+..  +. .+..++|.|++|+|+.|.+...|-..-..+.+|+.|-|.+..+...-- ..+..++.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45677788888888742  22 233378888888888888876553322456677888777776654432 344556555


Q ss_pred             cccc
Q 048290           79 TYER   82 (253)
Q Consensus        79 ~~L~   82 (253)
                      +.|.
T Consensus       149 telH  152 (418)
T KOG2982|consen  149 TELH  152 (418)
T ss_pred             hhhh
Confidence            5554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.51  E-value=0.0061  Score=58.50  Aligned_cols=79  Identities=16%  Similarity=0.093  Sum_probs=56.1

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~   80 (253)
                      |++|+.|.+++=.+...--..+..++++|..||+|+.+++-.  ..++.|++|+.|.+.+=.+.. ..-..+.+|++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            678899999887775432122333789999999999888743  667888888888776655542 11235778888888


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      ||
T Consensus       225 LD  226 (699)
T KOG3665|consen  225 LD  226 (699)
T ss_pred             ee
Confidence            88

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.79  E-value=0.022  Score=26.85  Aligned_cols=13  Identities=38%  Similarity=0.483  Sum_probs=5.1

Q ss_pred             CCCEEeccCCccC
Q 048290           53 FIQVLDLSLNIIS   65 (253)
Q Consensus        53 ~L~~LdLs~N~l~   65 (253)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.74  E-value=0.059  Score=48.42  Aligned_cols=65  Identities=14%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccC-CcCcccCcccccCCCCCCEEeccCC-ccCCCcChhhhcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKS-NKFHGNIPYQLCHLGFIQVLDLSLN-IISGKIPKCFNNF   75 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~-N~l~g~ip~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l   75 (253)
                      |.+++.|++++|.++ .+|. +   ..+|+.|.+++ +.++ .+|..+  ..+|+.|++++| .+. .+|..+..|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccccceE
Confidence            578899999999998 6772 2   34799999987 5554 566655  258999999998 554 677654443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.65  E-value=0.034  Score=29.10  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=12.6

Q ss_pred             CCcceEEECCCCcCccCCChhH
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWT   23 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~   23 (253)
                      +++|+.|+|++|+++ .+|...
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            356666666666666 455544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.65  E-value=0.034  Score=29.10  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=12.6

Q ss_pred             CCcceEEECCCCcCccCCChhH
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWT   23 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~   23 (253)
                      +++|+.|+|++|+++ .+|...
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            356666666666666 455544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.50  E-value=0.071  Score=39.29  Aligned_cols=77  Identities=10%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      |++|+.+.+.. .+. .++.....++.+|+.+.+.++ +...-...|.++.+|+.+.+.+ .+...-...|..+++|+.+
T Consensus        11 ~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            34566666653 344 233322225556666666554 4433334455665666666644 3321222345555555554


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      .
T Consensus        87 ~   87 (129)
T PF13306_consen   87 D   87 (129)
T ss_dssp             E
T ss_pred             c
Confidence            4

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.30  E-value=0.031  Score=48.55  Aligned_cols=16  Identities=25%  Similarity=0.181  Sum_probs=11.7

Q ss_pred             cccccccceeeeccCC
Q 048290          120 EYKSTLGLVRCLDLSR  135 (253)
Q Consensus       120 ~~~~~l~~L~~LdLS~  135 (253)
                      ..+..++.|+.|||..
T Consensus       207 eal~~~~~LevLdl~D  222 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRD  222 (382)
T ss_pred             HHHHhCCcceeeeccc
Confidence            3456778888888865

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.92  E-value=0.0021  Score=52.89  Aligned_cols=76  Identities=20%  Similarity=0.155  Sum_probs=56.9

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ...+.||++.|++- .+-..+. -++.|..|+++.|++. ..|.+++++..+..+++.+|+.+ ..|.+++..+.++.++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s-~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFS-ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchH-HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            34567888888776 4555565 5777888888888876 67888888888888888877776 7777888877777766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.0027  Score=54.03  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=56.2

Q ss_pred             cceEEECCCCcCccCC-ChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc-cCCC-cChhhhccccCcc
Q 048290            4 QLRVLDLGKNAFFGEI-PTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI-ISGK-IPKCFNNFSAMTY   80 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~-p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~-l~g~-ip~~l~~l~~L~~   80 (253)
                      .|++||||+-.++..- -.-+. .+.+|+-|.|.++++...|-..+..-.+|..|||+..+ |+.. ..-.+.+++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs-~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILS-QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHH-HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            5788999998887432 22333 68899999999999998888888888899999998742 2211 1124567777777


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       265 LN  266 (419)
T KOG2120|consen  265 LN  266 (419)
T ss_pred             cC
Confidence            76

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.78  E-value=0.07  Score=45.70  Aligned_cols=63  Identities=25%  Similarity=0.250  Sum_probs=48.3

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-cccccCCCCCCEEeccCCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLCHLGFIQVLDLSLNII   64 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~L~~LdLs~N~l   64 (253)
                      +++.|++|+|+.|.++..|-..-. .+.+|++|.|.+..+.-.- ...+..++.++.|.+|.|++
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            478899999999999876654323 5789999999988876433 33467788889999999954

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.77  E-value=0.14  Score=37.75  Aligned_cols=76  Identities=13%  Similarity=0.201  Sum_probs=45.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.+++.++ +. .++.....++++|+.+.+.+ .+...-...|..+++|+.+++..| +...-...|.+. .|+.+
T Consensus        34 ~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i  108 (129)
T PF13306_consen   34 CTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI  108 (129)
T ss_dssp             -TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred             cccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence            567899999886 66 45544443787999999976 444344556788999999999776 553344567776 77766


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      .
T Consensus       109 ~  109 (129)
T PF13306_consen  109 N  109 (129)
T ss_dssp             E
T ss_pred             E
Confidence            5

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.56  E-value=0.28  Score=44.14  Aligned_cols=60  Identities=13%  Similarity=0.274  Sum_probs=40.4

Q ss_pred             CcceEEECCC-CcCccCCChhHhhcCCCccEEEccCC-cCcccCcccccCCCCCCEEeccCCccC--CCcChhhh
Q 048290            3 SQLRVLDLGK-NAFFGEIPTWTGESLQNLIVLSLKSN-KFHGNIPYQLCHLGFIQVLDLSLNIIS--GKIPKCFN   73 (253)
Q Consensus         3 ~~L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~ip~~~~~l~~L~~LdLs~N~l~--g~ip~~l~   73 (253)
                      .+|+.|++++ ++++ .+|..+.   ++|+.|++++| .+. .+|.      +|..|+++.|...  +.+|..+.
T Consensus        72 ~sLtsL~Lsnc~nLt-sLP~~LP---~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk  135 (426)
T PRK15386         72 NELTEITIENCNNLT-TLPGSIP---EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLT  135 (426)
T ss_pred             CCCcEEEccCCCCcc-cCCchhh---hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHh
Confidence            3689999987 5665 6786553   58999999988 554 5664      3666777766542  35565444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=92.35  E-value=0.072  Score=46.34  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             CCcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCCCcChhhh
Q 048290            2 CSQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISGKIPKCFN   73 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~   73 (253)
                      ++.|+.+.++.|.|...    +-..+. .+++|++|||+.|.|+-.    +...++.+++|+.|+++++.++..=...|.
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            35678888888887521    223455 689999999999999743    244577888999999999988744332332


Q ss_pred             -----ccccCcccc
Q 048290           74 -----NFSAMTYER   82 (253)
Q Consensus        74 -----~l~~L~~L~   82 (253)
                           ..++|+.+.
T Consensus       263 ~al~~~~p~L~vl~  276 (382)
T KOG1909|consen  263 DALKESAPSLEVLE  276 (382)
T ss_pred             HHHhccCCCCceec
Confidence                 345677766

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.89  E-value=0.14  Score=26.64  Aligned_cols=14  Identities=43%  Similarity=0.394  Sum_probs=8.6

Q ss_pred             CCCCEEeccCCccC
Q 048290           52 GFIQVLDLSLNIIS   65 (253)
Q Consensus        52 ~~L~~LdLs~N~l~   65 (253)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.89  E-value=0.14  Score=26.64  Aligned_cols=14  Identities=43%  Similarity=0.394  Sum_probs=8.6

Q ss_pred             CCCCEEeccCCccC
Q 048290           52 GFIQVLDLSLNIIS   65 (253)
Q Consensus        52 ~~L~~LdLs~N~l~   65 (253)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.73  E-value=0.06  Score=27.56  Aligned_cols=14  Identities=36%  Similarity=0.487  Sum_probs=5.7

Q ss_pred             CCccEEEccCCcCc
Q 048290           28 QNLIVLSLKSNKFH   41 (253)
Q Consensus        28 ~~L~~L~L~~N~l~   41 (253)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444555554444

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.21  E-value=0.24  Score=42.56  Aligned_cols=55  Identities=22%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cCCCccEEEccCC-cCcccCcccccCCCCCCEEeccCCccCCCcChh---hhccccCcccc
Q 048290           26 SLQNLIVLSLKSN-KFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKC---FNNFSAMTYER   82 (253)
Q Consensus        26 ~l~~L~~L~L~~N-~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~---l~~l~~L~~L~   82 (253)
                      .+++|..|||++| .++...-.+|.++..|++|.|+.+.  +.+|..   +...++|.+|+
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLD  369 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEE
Confidence            5666667776643 3443333445666666666665443  355543   34445555555

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.95  E-value=0.024  Score=46.79  Aligned_cols=62  Identities=31%  Similarity=0.328  Sum_probs=51.1

Q ss_pred             CCC-hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290           18 EIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus        18 ~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .+| ..+. .......||++.|++. .+-..|.-++.|..||++.|++. ..|..++.+.++..++
T Consensus        32 ~~~v~ei~-~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~   94 (326)
T KOG0473|consen   32 EIPVREIA-SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAA   94 (326)
T ss_pred             ccchhhhh-ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHH
Confidence            344 3455 6788899999999997 45677888999999999999998 8899999888888877

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.90  E-value=0.055  Score=45.90  Aligned_cols=74  Identities=22%  Similarity=0.125  Sum_probs=56.0

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~   82 (253)
                      +.+.|+.=+..++. |  .+...++.|++|.|+=|.++..  ..+..|++|+.|+|..|.|...-. ..+.++++|+.|-
T Consensus        20 ~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            45567777777763 3  2444799999999999999865  347789999999999999873221 4677888888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.40  E-value=0.42  Score=40.63  Aligned_cols=80  Identities=20%  Similarity=0.198  Sum_probs=44.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhh---cCCCccEEEccCCcCccc----Ccc-------cccCCCCCCEEeccCCccCCC
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGE---SLQNLIVLSLKSNKFHGN----IPY-------QLCHLGFIQVLDLSLNIISGK   67 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~---~l~~L~~L~L~~N~l~g~----ip~-------~~~~l~~L~~LdLs~N~l~g~   67 (253)
                      +..++.+|||+|-|...-..|+..   +-.+|++.+++.-. +|.    +|.       .+-.|++|+..+||+|.|...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            356788999999886443333331   33455555555422 222    222       345667777777777777655


Q ss_pred             cChhhh----ccccCcccc
Q 048290           68 IPKCFN----NFSAMTYER   82 (253)
Q Consensus        68 ip~~l~----~l~~L~~L~   82 (253)
                      .|..++    .-+.|..|.
T Consensus       108 ~~e~L~d~is~~t~l~HL~  126 (388)
T COG5238         108 FPEELGDLISSSTDLVHLK  126 (388)
T ss_pred             cchHHHHHHhcCCCceeEE
Confidence            554433    334555555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.97  E-value=0.53  Score=24.77  Aligned_cols=14  Identities=36%  Similarity=0.487  Sum_probs=7.3

Q ss_pred             CcceEEECCCCcCc
Q 048290            3 SQLRVLDLGKNAFF   16 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~   16 (253)
                      ++|+.|+|+.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            44555555555554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.88  E-value=0.53  Score=24.75  Aligned_cols=17  Identities=24%  Similarity=0.552  Sum_probs=10.5

Q ss_pred             cceEEECCCCcCccCCCh
Q 048290            4 QLRVLDLGKNAFFGEIPT   21 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~   21 (253)
                      +|+.|++++|+++ .+|.
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4666666666666 4554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.85  E-value=1.2  Score=38.01  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=20.8

Q ss_pred             cCCCccEEEccCCcCcccCccc----ccCCCCCCEEeccCCcc
Q 048290           26 SLQNLIVLSLKSNKFHGNIPYQ----LCHLGFIQVLDLSLNII   64 (253)
Q Consensus        26 ~l~~L~~L~L~~N~l~g~ip~~----~~~l~~L~~LdLs~N~l   64 (253)
                      .|++|+..+||.|.|....|+.    +++-+.|.+|.|++|.+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            3555566666666555444443    33445555566655554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.42  E-value=0.91  Score=24.17  Aligned_cols=14  Identities=43%  Similarity=0.513  Sum_probs=8.9

Q ss_pred             CcceEEECCCCcCc
Q 048290            3 SQLRVLDLGKNAFF   16 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~   16 (253)
                      ++|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45666666666664

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=83.38  E-value=1  Score=34.52  Aligned_cols=21  Identities=10%  Similarity=-0.047  Sum_probs=9.4

Q ss_pred             eeeeehhhHHHHHHHHHHHHh
Q 048290          196 FYLSSILGFFVGFWGVCGTLM  216 (253)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~  216 (253)
                      +++++++|+.+.+++++++++
T Consensus        50 IVIGvVVGVGg~ill~il~lv   70 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALV   70 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhh
Confidence            455555554443333333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=82.28  E-value=2.3  Score=24.88  Aligned_cols=25  Identities=8%  Similarity=-0.089  Sum_probs=10.1

Q ss_pred             eeeeehhhHHHHHHHHHHHHhccCc
Q 048290          196 FYLSSILGFFVGFWGVCGTLMLNRS  220 (253)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~  220 (253)
                      +.+++++.+++.++++.+++++++|
T Consensus        13 Ia~~VvVPV~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen   13 IAVGVVVPVGVIIIVLGAFLFFWYR   37 (40)
T ss_pred             EEEEEEechHHHHHHHHHHhheEEe
Confidence            3344444444433333344443333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.02  E-value=0.45  Score=35.27  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=15.0

Q ss_pred             eeeeeehhhHHHHHHHHHHHHhccCc
Q 048290          195 GFYLSSILGFFVGFWGVCGTLMLNRS  220 (253)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (253)
                      ..++++++|+++|+++++++++|+.+
T Consensus        64 ~~i~~Ii~gv~aGvIg~Illi~y~ir   89 (122)
T PF01102_consen   64 PAIIGIIFGVMAGVIGIILLISYCIR   89 (122)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHH
Confidence            34556666777776666655554433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-08
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC+ L  + L  N   GEIP W G  L+NL +L L +N F GNIP +L     +  LDL+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 61  LNIISGKIPKCF 72
            N+ +G IP   
Sbjct: 547 TNLFNGTIPAAM 558

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC+ L  + L  N   GEIP W G  L+NL +L L +N F GNIP +L     +  LDL+
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 61  LNIISGKIPKCF 72
            N+ +G IP   
Sbjct: 544 TNLFNGTIPAAM 555

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 67/185 (36%), Gaps = 27/185 (14%)
Query: 5   LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG-FIQVLDLSLNI 63
           L  LD   NA  G +P     SL NL+ ++   N+  G IP            + +S N 
Sbjct: 127 LVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 64  ISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKS 123
           ++GKIP  F N +    +   N   G A ++F             N L    G     K+
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 124 TLGL-------------------------VRCLDLSRKIPLGTQLQSFNASVYAGNLELC 158
             GL                         V   +L  +IP G  LQ F+ S YA N  LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 159 GLPLA 163
           G PL 
Sbjct: 306 GSPLP 310

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 1e-25
 Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 46/177 (25%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N   +  LD+  N   G IP   G S+  L +L+L  N   G+IP ++  L  + +LDLS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
            N + G+IP+  +  + +T                            ++L      S N 
Sbjct: 689 SNKLDGRIPQAMSALTMLTE---------------------------IDL------SNN- 714

Query: 121 YKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEESTPSPGT 177
                      +LS  IP   Q ++F  + +  N  LCG PL    P      +   
Sbjct: 715 -----------NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 4e-23
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NC+ L  + L  N   GEIP W G  L+NL +L L +N F GNIP +L     +  LDL+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
            N+ +G IP      S                 +++         +    LL ++G  +E
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKR----YVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 121 YKSTLGLVRCLDLSR 135
             + L      +++ 
Sbjct: 603 QLNRLSTRNPCNITS 617

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           NCS+L  L L  N   G IP+  G  L  L  L L  N   G IP +L ++  ++ L L 
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N ++G+IP   +N + + +
Sbjct: 475 FNDLTGEIPSGLSNCTNLNW 494

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 5/135 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L +L L  N+F G IP   G   ++LI L L +N F+G IP  +          ++
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIA 566

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
            N I+GK      N         +   + F  +                    + G  + 
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 121 YKSTLGLVRCLDLSR 135
                G +  LD+S 
Sbjct: 627 TFDNNGSMMFLDMSY 641

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 9e-16
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L+ L L +N F GEIP +   +   L  L L  N F+G +P        ++ L LS
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 61  LNIISGKIPK-CFNNFSAMTY 80
            N  SG++P         +  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKV 347

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 2   CSQLRVLDLGKNAFFGEIPTWTGES-LQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            + L  LDL  N F G I     ++    L  L L++N F G IP  L +   +  L LS
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +SG IP    + S +  
Sbjct: 427 FNYLSGTIPSSLGSLSKLRD 446

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           + S+LR L L  N   GEIP      ++ L  L L  N   G IP  L +   +  + LS
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N ++G+IPK       +  
Sbjct: 499 NNRLTGEIPKWIGRLENLAI 518

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 9e-15
 Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCH--LGFIQVLD 58
               L+VLDL  N F GE+P        +L+ L L SN F G I   LC      +Q L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 59  LSLNIISGKIPKCFNNFSAMTY 80
           L  N  +GKIP   +N S +  
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVS 422

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQ-LCHLGFIQVLDL 59
            C  L  LDL  N F+G +P + G S   L  L+L SN F G +P   L  +  ++VLDL
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 60  SLNIISGKIPKCFNNFSA 77
           S N  SG++P+   N SA
Sbjct: 351 SFNEFSGELPESLTNLSA 368

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCH-LGFIQVLDL 59
            C++L++L++  N F G IP      L++L  LSL  NKF G IP  L      +  LDL
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 60  SLNIISGKIPKCFNNFSAMTY 80
           S N   G +P  F + S +  
Sbjct: 302 SGNHFYGAVPPFFGSCSLLES 322

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-GFIQVLDL 59
           +CS L  L L  N F GE+P  T   ++ L VL L  N+F G +P  L +L   +  LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 60  SLNIISGKIPKCFNNFS 76
           S N  SG I        
Sbjct: 376 SSNNFSGPILPNLCQNP 392

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            C +L+ L +  N   G++         NL  L + SN F   IP  L     +Q LD+S
Sbjct: 176 GCGELKHLAISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS 231

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +SG   +  +  + +  
Sbjct: 232 GNKLSGDFSRAISTCTELKL 251

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            C  L  LD+  N F   IP         L  L +  NK  G+    +     +++L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N   G IP       ++ Y
Sbjct: 256 SNQFVGPIPPL--PLKSLQY 273

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFI---QVL 57
           +CS L+ L++  N          G  L +L VL L +N   G               + L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 58  DLSLNIISGKIPKCFNNFSAMTY 80
            +S N ISG +    +    + +
Sbjct: 184 AISGNKISGDVD--VSRCVNLEF 204

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTG-ESLQNLIVLSLKSNKFHGNIPYQ-LCHLGFIQVLD 58
             + L  LDL +N+  G + T T   S   L  L++ SN             L  ++VLD
Sbjct: 98  CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

Query: 59  LSLNIISGKIPKCFNNFSAMT 79
           LS N ISG     +       
Sbjct: 158 LSANSISGANVVGWVLSDGCG 178

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP--YQLCHLGFIQVLD 58
           + + L  L L  +   G +  +      +L  L L  N   G +     L     ++ L+
Sbjct: 75  SLTGLESLFLSNSHINGSVSGFK--CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 59  LSLNIISGKIP 69
           +S N +     
Sbjct: 133 VSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 1   NCSQLRVLDLGKNA--FFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLD 58
           N    +      N   F G         L      ++ S  + G+      + G +  LD
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 59  LSLNIISGKIPKCFNNFSAMTY 80
           +S N++SG IPK   +   +  
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFI 660

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 8e-17
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             +QL  L +      G IP +    ++ L+ L    N   G +P  +  L  +  +   
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 61  LNIISGKIPKCFNNFS 76
            N ISG IP  + +FS
Sbjct: 158 GNRISGAIPDSYGSFS 173

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.4 bits (189), Expect = 1e-16
 Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 48/162 (29%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N + L  +DL +N   G+     G S +N   + L  N    ++  ++     +  LDL 
Sbjct: 196 NLN-LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
            N I G +P+       +                             +N+      S N 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHS---------------------------LNV------SFN- 278

Query: 121 YKSTLGLVRCLDLSRKIPLGTQLQSFNASVYAGNLELCGLPL 162
                      +L  +IP G  LQ F+ S YA N  LCG PL
Sbjct: 279 -----------NLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 5e-13
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDL-GKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDL 59
           N   L  L + G N   G IP      L  L  L +      G IP  L  +  +  LD 
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 60  SLNIISGKIPKCFNNFSAMTY 80
           S N +SG +P   ++   +  
Sbjct: 133 SYNALSGTLPPSISSLPNLVG 153

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 8   LDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG--NIPYQLCHLGFIQVLDLS-LNII 64
            D     + G +          +  L L          IP  L +L ++  L +  +N +
Sbjct: 31  TDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 65  SGKIPKCFNNFSAMTY 80
            G IP      + + Y
Sbjct: 90  VGPIPPAIAKLTQLHY 105

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 18/80 (22%), Positives = 29/80 (36%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             S L VL +  N+F           L+NL  L L   +     P     L  +QVL++S
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N         +   +++  
Sbjct: 503 HNNFFSLDTFPYKCLNSLQV 522

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
              QL  LD   +            SL+NLI L +               L  ++VL ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 61  LNIISGKIPKC-FNNFSAMTY 80
            N          F     +T+
Sbjct: 454 GNSFQENFLPDIFTELRNLTF 474

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L  LDL +       PT    SL +L VL++  N F     +    L  +QVLD S
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 61  LNIISGKIPKCFNNF 75
           LN I     +   +F
Sbjct: 527 LNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           + S L  L L  N             L +L  L            + + HL  ++ L+++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 61  LN-IISGKIPKCFNNFSAMTY 80
            N I S K+P+ F+N + + +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEH 153

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG-NIPYQLCHLGFIQVLDL 59
             S L+ L   +           G  L+ L  L++  N      +P    +L  ++ LDL
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 60  SLNIISGKIPKCFNNFSAMTYERCS 84
           S N I             M     S
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           +  +L+VLDL +             SL +L  L L  N            L  +Q L   
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 61  LNIISGKIPKCFNNFSAMTY 80
              ++        +   +  
Sbjct: 109 ETNLASLENFPIGHLKTLKE 128

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP---YQLCHLGFIQV- 56
           +   L+ L++  N            +L NL  L L SNK           L  +  + + 
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 57  LDLSLNIISGKIPKCFNNFS 76
           LDLSLN ++   P  F    
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 3   SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
              + LDL  N         +  S   L VL L   +           L  +  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 63  IISGKIPKCFNNFSAMTY 80
            I       F+  S++  
Sbjct: 87  PIQSLALGAFSGLSSLQK 104

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 1   NCSQLRVLDLGKNAF-FGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDL 59
           +   L  LDL +N   F    + +     +L  L L  N     +      L  ++ LD 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 60  SLNIISGKIPK-CFNNFSAMTY 80
             + +        F +   + Y
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIY 425

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 10/82 (12%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFI------ 54
             + L+VLD   N               +L  L+L  N F         H  F+      
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE----HQSFLQWIKDQ 571

Query: 55  QVLDLSLNIISGKIPKCFNNFS 76
           + L + +  +    P       
Sbjct: 572 RQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGN------IPYQLCHLGFI 54
              +L  L L  N     +     + L  L V  L   +F             L  L  +
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 55  QVLDLSLNIISGKIPKCFNNFSAMT 79
            + +  L  +   +    + F+ +T
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLT 282

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
                + L+L     FG+ PT   +SL+ L   S K     G   +    L  ++ LDLS
Sbjct: 302 YNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSLEFLDLS 355

Query: 61  LNIIS--GKIPKCFNNFSAMTY 80
            N +S  G   +     +++ Y
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKY 377

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L VLDLG N    E+       L+N+  + L  NK+          +  +Q L L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 61  LNIISG--KIPKCFNNFSAMTY 80
              +      P  F     +T 
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTI 484

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPY--QLCHLGFIQVLD 58
               L  LDL  N             L+NL  L L +NK          +     ++ L+
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 59  LSLNIISGKIPKCFNNFSAMTY 80
           LS N I    P CF+    +  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFG 199

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTW-TGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDL 59
             + +R L L  +       T   G    NL +L L  N  +         L  ++   L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 60  SLNIISGKIPKCFNNFSAMTY 80
             N I        +    + Y
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRY 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            C+ L  L L  N+             +NLI L L  N            L  +Q L LS
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 61  LNIISGKIPKCFNNFS 76
            N I     +  + F+
Sbjct: 154 NNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             SQL  LD+G N      P    + L  L VL+L+ N+              +  L L 
Sbjct: 47  RYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N I       F     +  
Sbjct: 106 SNSIQKIKNNPFVKQKNLIT 125

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L+VL+L  N    ++   T     NL  L L SN               +  LDLS
Sbjct: 71  KLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +S            +  
Sbjct: 130 HNGLSSTKLGTQVQLENLQE 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQN--LIVLSLKSNKFHGNIPYQLCHLGF--IQV 56
              +L  L L        +       L N  +  LSL +++           L +  + +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 57  LDLSLNIISGKIPKCFNNFSAMTY 80
           LDLS N ++      F     + Y
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEY 276

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             S L +L+L  N F  EIP    + L  L ++ L  N  +        +   ++ L+L 
Sbjct: 534 GLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 61  LNIISGKIPKCF 72
            N+I+    K F
Sbjct: 593 KNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 1   NCSQLRVLDLGKNAF-FGEIPTWTGESLQN--LIVLSLKSNKFHGNIPYQLCHLGFIQVL 57
               L+ L L  +      +   T  SL +  L +L+L  NK           LG ++VL
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 58  DLSLNIISGKIP-KCFNNFSAMTY 80
           DL LN I  ++  + +     +  
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFE 434

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 1   NCSQLRVLDLGKN-------AFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGF 53
              +L +LDL  N             P +  + L +L +L+L+SN F          L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 54  IQVLDLSLNIISGKIPKCFNNFSAMTY 80
           ++++DL LN ++      FNN  ++  
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKS 588

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 1   NCSQLRVLDLGKNAF--FGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLD 58
               L+ L L + A       P+     L+NL +L L +N         L  L  +++LD
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 59  LSLNIISGKIPKCFNNFSAMTYERCSN 85
           L  N ++               +  S+
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSH 537

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDL 59
               L+ L L  N             +  +L  L L SN+     P     +G +  L L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 60  SLNIISGKIPKCFNNFSAMT 79
           +   +   + +      A T
Sbjct: 203 NNVQLGPSLTEKLCLELANT 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 3   SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
           + + VL+L  N     +P         L  L +  N      P     L  ++VL+L  N
Sbjct: 25  TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 63  IISGKIPKCFNNFSAMTY 80
            +S    K F   + +T 
Sbjct: 84  ELSQLSDKTFAFCTNLTE 101

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTG--ESLQ------NLIVLSLKSNKFHGNIPYQLCHLG 52
              QL    L  N              +++      +    S+          +    L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 53  FIQVLDLSLNIISGKIPKCFNNFSAMTY 80
            ++ L++  N I G     F     + Y
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKY 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 1   NCSQLRVLDLGKNAF--------FGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG 52
               +R L+L ++            +I  ++ + L+ L  L+++ N   G        L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 53  FIQVLDLSLNIISGKIPKCFNNFSAMT 79
            ++ L LS +  S         F ++ 
Sbjct: 354 NLKYLSLSNSFTSL-RTLTNETFVSLA 379

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             + L +LDL  N     +   +   L  L    L+ N       + L  L  ++ L+L 
Sbjct: 246 KWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 61  LNI---------ISGKIPKCFNNFSAMTY 80
            +          +       F     + +
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEH 333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 2  CS-QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
          C+    V D        ++P    +   N+ VL+L  N+              +  LD+ 
Sbjct: 2  CTVSHEVADCSHL-KLTQVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 61 LNIISGKIPKCFNNFSAMTY 80
           N IS   P+       +  
Sbjct: 58 FNTISKLEPELCQKLPMLKV 77

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N   L+ L+L KN          G + +NL  L ++ N F            F+  ++ +
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWINET 638

Query: 61  LNIISG 66
              I  
Sbjct: 639 HTNIPE 644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 17/79 (21%), Positives = 29/79 (36%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            C QL +LDL       +      ++L  L VL+L  +    +       L  +Q L+L 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 61  LNIISGKIPKCFNNFSAMT 79
            N       +  N+   + 
Sbjct: 458 GNHFPKGNIQKTNSLQTLG 476

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFH--GNIPYQLCHLGFIQVLD 58
           N   L  L +  N    E+ T   E+L+NL  L L  +          QL +L  +Q L+
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 59  LSLNIISGKIPKCFNNFSAMTY 80
           LS N       + F     +  
Sbjct: 383 LSYNEPLSLKTEAFKECPQLEL 404

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 13/80 (16%), Positives = 20/80 (25%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           +  +L  L L  N       T      + L  L              L +   ++ L L 
Sbjct: 79  SQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N IS            +  
Sbjct: 138 SNHISSIKLPKGFPTEKLKV 157

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L  LDL +      I   T +S   L  L L +N         L     ++ L   
Sbjct: 55  RLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 61  LNIISGKIPKCFNNFSAMTY 80
              IS       +N   +  
Sbjct: 114 QTGISSIDFIPLHNQKTLES 133

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTG--ESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLD 58
               L+ L+L  N F       T   ++L  L +L L          +    L  +  +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 59  LSLNIISGKIPKCFNN 74
           LS N ++    +  ++
Sbjct: 507 LSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI---PYQLCHLGFIQVL 57
           N   L+VL+L  +           + L  L  L+L+ N F          L  LG +++L
Sbjct: 423 NLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 58  DLSLNIISGKIPKCFNNFSAMTY 80
            LS   +S      F +   M +
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNH 504

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPY-QLCHLGFIQVLDL 59
           N S L+ L+L  N     + T   +    L +L L   +           +L  ++VL+L
Sbjct: 374 NLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 60  SLNIISGKIPKCFNNFSAMTY 80
           S +++     + F+   A+ +
Sbjct: 433 SHSLLDISSEQLFDGLPALQH 453

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             S L+ LDL       E+P+     L  L  L L +NKF         +   +  L + 
Sbjct: 276 CFSGLQELDLTATHL-SELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 61  LNIISGKI-PKCFNNFSAMTY 80
            N    ++   C  N   +  
Sbjct: 334 GNTKRLELGTGCLENLENLRE 354

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L+ L   +      I      + + L  L L SN        +      ++VLD  
Sbjct: 103 GPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 61  LNIISGKIPKCFNNFSAMT 79
            N I     +  ++    T
Sbjct: 162 NNAIHYLSKEDMSSLQQAT 180

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 1   NCSQLRVLDLGKNAF-FGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDL 59
           N   LR LDL  +     +       +L +L  L+L  N+              +++LDL
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 60  SLNIISGKIPK-CFNNFSAMTY 80
           +   +  K  +  F N   +  
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKV 429

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 3   SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN 62
           +    L+   N     I   T   L NL  L L   + +            +  L L+ N
Sbjct: 33  NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 63  IISGKIPKCFNNFSAMTY 80
            +        +   A+ +
Sbjct: 92  PLIFMAETALSGPKALKH 109

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQV--LD 58
           N   L  L LG N     I    G   + L VL  ++N  H      +  L       L+
Sbjct: 127 NQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 59  LSLNIISGKIPKCFNNFS 76
           L+ N I+G  P  F++  
Sbjct: 186 LNGNDIAGIEPGAFDSAV 203

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTW-TGESLQNLIVLSLKSNKFHG---NIPYQLCHLGFIQV 56
           + +  + L+ G       I       ++Q+L + + +          +   LC +  ++ 
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VES 258

Query: 57  LDLSLNIISGKIPKCFNNFSAMTYERCSN 85
           ++L  +         F+ FS +     + 
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTA 287

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 14/80 (17%), Positives = 29/80 (36%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             + L  L +  N+F     +    +  NL  L L   +           L  +Q+L++S
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +       +N   +++ 
Sbjct: 506 HNNLLFLDSSHYNQLYSLST 525

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 10/72 (13%), Positives = 20/72 (27%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
              +L+ LD   +            SL+ L+ L +       +       L  +  L ++
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 61  LNIISGKIPKCF 72
            N          
Sbjct: 457 GNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N + L  LDL K             +L  L +L++  N            L  +  LD S
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N I        +   ++ +
Sbjct: 530 FNRIETSKGILQHFPKSLAF 549

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG-NIPYQLCHLGFIQVLDL 59
             + L  L   +      + ++    L  L  L++  N  H   +P    +L  +  +DL
Sbjct: 102 GLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 60  SLNIISGKIPKCFNNFSAMTY 80
           S N I                
Sbjct: 161 SYNYIQTITVNDLQFLRENPQ 181

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N S+L+ LDL +              L +L  L L  N      P     L  ++ L   
Sbjct: 54  NFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 61  LNIISGKIPKCFNNFSAMTY 80
              ++            +  
Sbjct: 113 ETKLASLESFPIGQLITLKK 132

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG----FIQV 56
               L+ L++  N            +L NL+ + L  N         L  L         
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 57  LDLSLNIISGKIPKCFNNFS 76
           LD+SLN I     + F    
Sbjct: 186 LDMSLNPIDFIQDQAFQGIK 205

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQ-LCHLGFIQVLDL 59
             + LR LDL  N        + G  L+ L  L  + +       +     L  +  LD+
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 60  SLNIISGKIPKCFNNFSAMTY 80
           S           F   +++  
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNT 452

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L  L L  N         +   L +L  L     K      + +  L  ++ L+++
Sbjct: 78  GLHHLSNLILTGNPI-QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136

Query: 61  LNIISG-KIPKCFNNFSAMTY 80
            N I   K+P  F+N + + +
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVH 157

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 17/144 (11%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQ---------LCHL 51
              +L  L L  N     I     ++L  L V  L   +F      +         LC +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 52  GFIQVLDLSLNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLL 111
              +   L+           F+  + ++    +        + ++     ++     +L 
Sbjct: 262 TIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAG-----VSIKYLEDVPKHF--KWQSLS 313

Query: 112 LTWKGSENEYKSTLGLVRCLDLSR 135
           +     +      L  ++ L L+ 
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTM 337

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVL--- 57
           N   L  +DL  N        +   +L  L+ + L  N F    P Q  +   ++     
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 58  ---DLSLNIISGKIPKCFNNFSAMTY 80
              D   N    + P+      ++T 
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP--YQLCHLGFIQVLD 58
           +  +L  L+L  N    EIP       + +  LS   NK    IP  +    +  +  +D
Sbjct: 351 SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAID 408

Query: 59  LSLNIISGKIPKCFNNFSA 77
            S N I     K F+    
Sbjct: 409 FSYNEIGSVDGKNFDPLDP 427

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 9/79 (11%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG-------NIPYQLCHLGF 53
               +  ++L  N            +   L  ++L  N           +      +   
Sbjct: 431 KGINVSSINLSNNQISKFPKEL-FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 54  IQVLDLSLNIISGKIPKCF 72
           +  +DL  N ++  +   F
Sbjct: 490 LTSIDLRFNKLTK-LSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSL------KSNKFHGNIPYQLCHLGFI 54
               L  +DL  N+F  + PT    +   L    +      + N+     P  +     +
Sbjct: 511 TLPYLVGIDLSYNSF-SKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 55  QVLDLSLNIISGKIPKCF 72
             L +  N I   + +  
Sbjct: 569 TQLQIGSNDIRK-VNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 1   NCSQLRVLDLGKNAF-------FGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGF 53
           + S +  +D   N         F  +         N+  ++L +N+              
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 54  IQVLDLSLNIISGKIPKCFNNFSAMTYERCSN 85
           +  ++L  N+++  IPK         ++    
Sbjct: 459 LSSINLMGNMLTE-IPKNSLKDENENFKNTYL 489

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             ++LR   +G + F  E         +     + +  + +     +  +L  +  +++ 
Sbjct: 204 RLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 61  LNIISGKIPKCFNNFSAMTY 80
                 K+P        M  
Sbjct: 258 NCPNLTKLPTFLKALPEMQL 277

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 5/78 (6%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQV 56
           +  ++  L L      G +P   G  L  L VL+L S+    N     P  +      + 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 57  LDLSLNIISGKIPKCFNN 74
                             
Sbjct: 138 KQKMRMHYQKTFVDYDPR 155

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 8/78 (10%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 1   NCSQLRVLDLGKNAF--------FGEIPTWTGESLQNLIVLSLKSNKF-HGNIPYQLCHL 51
              +++++++  N            +         + + ++ +  N      +   L  +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAP-VGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 52  GFIQVLDLSLNIISGKIP 69
             + +L+   N + GK+P
Sbjct: 330 KKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC-HLGFIQVLDL 59
              +L +L+   N   G++P +   S   L  L+L  N+    IP   C     ++ L  
Sbjct: 328 KMKKLGMLECLYNQLEGKLPAF--GSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSF 384

Query: 60  SLNIISGKIPKCF 72
           + N +   IP  F
Sbjct: 385 AHNKLKY-IPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 5/85 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLK---SNKFHGNIPYQLCHLGF--IQ 55
             ++L VL LG +        +  + +   +    K      +            F  + 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 56  VLDLSLNIISGKIPKCFNNFSAMTY 80
              ++ +     I K        T 
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQ 187

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            C  L  L +G N    ++     +   N+ VL +K N         +C      +  L 
Sbjct: 564 LCPSLTQLQIGSN-DIRKVN---EKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 61  LNIISGKIPKC 71
            +     I  C
Sbjct: 620 YDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 10/86 (11%)

Query: 1   NCSQLRVLDLG------KNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFI 54
           N S L+   +        N    E P        +L  L + SN     +  ++     I
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIRK-VNEKITPN--I 589

Query: 55  QVLDLSLNIISGKIPKCFNNFSAMTY 80
            VLD+  N            +     
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 8/80 (10%), Positives = 21/80 (26%), Gaps = 2/80 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           + S L    +  +     I   +  +L     +   SN     +   +  L  ++   + 
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            +    +            Y
Sbjct: 215 NSPFVAENICEAWENENSEY 234

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 4/81 (4%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP--YQLCHLGFIQVLD 58
              +L  L L  N    EIP         +  L    NK    IP  +    +  +  +D
Sbjct: 593 TNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVD 650

Query: 59  LSLNIISGKIPKCFNNFSAMT 79
            S N I  +      +     
Sbjct: 651 FSYNKIGSEGRNISCSMDDYK 671

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 7/86 (8%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N   L  +DL  N        +   +L  L  + +  N F    P Q  +   ++   + 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784

Query: 61  LNI------ISGKIPKCFNNFSAMTY 80
                    I  + P       ++  
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 10/75 (13%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG---------NIPYQLCHL 51
           N   L  ++L       ++P +    L  L  L++  N+             +       
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 52  GFIQVLDLSLNIISG 66
             IQ+  +  N +  
Sbjct: 548 PKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 12/107 (11%), Positives = 32/107 (29%), Gaps = 27/107 (25%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGES------------------LQNLIVLSLKSNKFHG 42
             ++L+++    + F  +      E                   L++L  + L +     
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 43  NIPYQLCHLGFIQVLDLSLNIISG---------KIPKCFNNFSAMTY 80
            +P  L  L  +Q L+++ N             ++    +    +  
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 13/92 (14%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQ-----NLIVLSLKSNKFHGNIPYQLCHLGFIQ 55
           +   +  +D   N   G        S+      N   ++L  N+              I 
Sbjct: 642 SVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 56  VLDLSLNIIS-------GKIPKCFNNFSAMTY 80
            + LS N+++             + N   +T 
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC-HLGFIQVLDL 59
              +L +LD   N     +  +       L  L L  N+    IP   C     ++ L  
Sbjct: 571 KMVKLGLLDCVHNKV-RHLEAFGT--NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626

Query: 60  SLNIISGKIPKCFN 73
           S N +   IP  FN
Sbjct: 627 SHNKLKY-IPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 10/58 (17%), Positives = 21/58 (36%)

Query: 17  GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNN 74
           G+ P    ++   +  LSL      G +P  +  L  ++VL    +  +       + 
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSL------KSNKFHGNIPYQLCHLGFI 54
               L  +D+  N F    PT    +   L    +      + N+     P  +     +
Sbjct: 751 TLPYLSNMDVSYNCF-SSFPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 55  QVLDLSLNIISGKIP 69
             L +  N I  K+ 
Sbjct: 809 IQLQIGSNDIR-KVD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N  ++  L L      G +P   G+ L  L VLS  ++    +            + +  
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 61  LNIISGKIPKCF 72
            + I     K F
Sbjct: 380 KHRIRMHYKKMF 391

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
              ++++  +G N       + + + +  L +L    NK   ++         +  L L 
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N I             +  
Sbjct: 604 YNQIEEIPEDFCAFTDQVEG 623

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 9/79 (11%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKF-------HGNIPYQLCHLGF 53
                  + L  N            +   +  + L +N                  +   
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFA-TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 54  IQVLDLSLNIISGKIPKCF 72
           +  +DL  N ++  +   F
Sbjct: 730 LTTIDLRFNKLTS-LSDDF 747

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 31/80 (38%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N + L+ L +G    F EI       L +L  L +K+          L  +  I  L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 61  LNIISGKIPKCFNNFSAMTY 80
           L+  +  +    +  S++ Y
Sbjct: 181 LSESAFLLEIFADILSSVRY 200

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
            C+ L+VL L  +     I      SL +L  L L  N            L  ++ L+L 
Sbjct: 48  ACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106

Query: 61  LN-IISGKIPKCFNNFSAMTY 80
            N   +  +   F N + +  
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQT 127

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC-HLGFIQVLDL 59
               +R L + +   F    +     L+ +  ++++++K    +P     HL  ++ LDL
Sbjct: 284 ETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341

Query: 60  SLNIISGKIPKCFNNFSAMT 79
           S N++  +  K      A  
Sbjct: 342 SENLMVEEYLKNSACKGAWP 361

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 1  NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
          N ++ ++  +  ++   +      +S  N+  L L  N         L     +++L+LS
Sbjct: 8  NGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 61 LNIISG 66
           N++  
Sbjct: 67 SNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           +   L  L+L  N  + ++          L  L L SNK    +  +      +  + L 
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +   I K       + +
Sbjct: 223 NNKLV-LIEKALRFSQNLEH 241

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 1  NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
          N ++ ++  +  +    +      +S  N+  L L  N         L     +++L+LS
Sbjct: 8  NGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 61 LNIIS 65
           N++ 
Sbjct: 67 SNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           +   L  L+L  N  + ++          L  L L SNK    +  +      +  + L 
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +   I K       + +
Sbjct: 223 NNKLV-LIEKALRFSQNLEH 241

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L+VL+L  N   GE+ +     L  +  + L+ N            L  +Q LDL 
Sbjct: 312 GLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 61  LNIIS 65
            N ++
Sbjct: 371 DNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
              QL++L+LG       I      +L NL +L L S+K +   P     L  +  L L 
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105

Query: 61  LNIISGKI--PKCFNNFSAMTY 80
              +S  +     F N  A+T 
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTR 127

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L+VL+L  N    +I       L NL VL+L  N            L  +  +DL 
Sbjct: 288 TLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N I+    + F     +  
Sbjct: 347 KNHIAIIQDQTFKFLEKLQT 366

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N   L  +DL  N    +I       +Q L  L + +N+    +      +  ++VLDLS
Sbjct: 252 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +   + +    F  +  
Sbjct: 310 HNHLL-HVERNQPQFDRLEN 328

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKF-HGNIPYQLCHLGFIQVLDL 59
             S L+ L   +      +  +    L+ L  L++  N      +P    +L  ++ LDL
Sbjct: 98  GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 60  SLNIISGKIPKCFNNFSAMTYERCS 84
           S N I             M     S
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           + S L  L L  N     +       L +L  L            + + HL  ++ L+++
Sbjct: 74  SLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 61  LNII-SGKIPKCFNNFSAMTY 80
            N+I S K+P+ F+N + + +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEH 153

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
              QL  LD   +            SL+NLI L +               L  ++VL ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 61  LNIISGKIPK-CFNNFSAMTY 80
            N          F     +T+
Sbjct: 454 GNSFQENFLPDIFTELRNLTF 474

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N   L  +DL  N    +I       +Q L  L + +N+    +      +  ++VLDLS
Sbjct: 246 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N +   + +    F  +  
Sbjct: 304 HNHLL-HVERNQPQFDRLEN 322

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFH---GNIPYQLCHLGFIQVL 57
              QL+ LDL  N+        + +    L  L+L           +P +L       VL
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL------SVL 279

Query: 58  DLSLNIISG 66
           DLS N +  
Sbjct: 280 DLSYNRLDR 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
               L  LDLG+      I     E L NL  L+L       ++P  L  L  ++ L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMS 226

Query: 61  LNIISGKIPKCFNNFSAMTY 80
            N      P  F+  S++  
Sbjct: 227 GNHFPEIRPGSFHGLSSLKK 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             + L+ L L   +    +P      L  L  L L+       +P  +  L    ++ + 
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 61  LNIIS 65
            ++ +
Sbjct: 310 PHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
             S L+ + +       E+P         L  L+L  N     +P  +  L  ++ L + 
Sbjct: 102 RLSHLQHMTIDAAGL-MELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 61  LNIISGKIPKCFNNFSA 77
                 ++P+   +  A
Sbjct: 159 ACPELTELPEPLASTDA 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.49
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.48
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.48
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.42
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.4
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.39
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.35
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.34
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.32
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.24
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.03
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.02
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.01
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.96
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.96
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.76
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.76
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.98
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.99
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.29
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	86.33
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	80.77

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=2e-23  Score=199.59  Aligned_cols=108  Identities=26%  Similarity=0.378  Sum_probs=78.4

Q ss_pred             CCCCEEeccCCccCCCcChhhhccccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeeccccccc
Q 048290           52 GFIQVLDLSLNIISGKIPKCFNNFSAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYK  122 (253)
Q Consensus        52 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~  122 (253)
                      ++|+.|||++|+++|.+|..++++++|+.|+  .|.+    .|.+|..       ..+++++|.       ++|.+|..+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l----~g~ip~~l~~L~~L~~LdLs~N~-------l~g~ip~~l  700 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI----SGSIPDEVGDLRGLNILDLSSNK-------LDGRIPQAM  700 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC----CSCCCGGGGGCTTCCEEECCSSC-------CEECCCGGG
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc----CCCCChHHhCCCCCCEEECCCCc-------ccCcCChHH
Confidence            4455566666666666666666666666666  3334    3345543       223445554       688899999


Q ss_pred             ccccceeeeccCC-----CCCCCCCCCCCCccccCCcCCCCCccCCCCCCCCCC
Q 048290          123 STLGLVRCLDLSR-----KIPLGTQLQSFNASVYAGNLELCGLPLANKCPDEES  171 (253)
Q Consensus       123 ~~l~~L~~LdLS~-----~iP~~~~l~~~~~~~~~gN~~LCg~~~~~~C~~~~~  171 (253)
                      +.++.|+.||||+     .||.+++|.+++..+|.|||+|||.|+. +|.....
T Consensus       701 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            9999999999887     8999999999999999999999999987 8975543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=8.3e-20  Score=156.90  Aligned_cols=155  Identities=29%  Similarity=0.438  Sum_probs=118.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCC-CCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG-FIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|++|+|++|++++.+|..+. .+++|++|+|++|+++|.+|..++.++ +|+.|+|++|++++.+|..+..++ |+.
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~  201 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred             CCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence            57888888888888888888887 788888888888888888888888887 888888888888888888777776 777


Q ss_pred             cc--CCCCCccc--------------------ccccccC------CCcccccceeeeeEEEeecccccccccccceeeec
Q 048290           81 ER--CSNPTIGF--------------------AKLIFVP------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLD  132 (253)
Q Consensus        81 L~--~n~~~~~~--------------------~~~ip~~------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~Ld  132 (253)
                      |+  .|.+....                    .+.+|..      ..+.+.+|.       +++.+|..+..++.|+.||
T Consensus       202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-------IYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC-------CEECCCGGGGGCTTCCEEE
T ss_pred             EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc-------ccCcCChHHhcCcCCCEEE
Confidence            76  33221100                    1111111      122233333       5888999999999999999


Q ss_pred             cCC-----CCCCCCCCCCCCccccCCcCCCCCccCCCCC
Q 048290          133 LSR-----KIPLGTQLQSFNASVYAGNLELCGLPLANKC  166 (253)
Q Consensus       133 LS~-----~iP~~~~l~~~~~~~~~gN~~LCg~~~~~~C  166 (253)
                      |++     .+|...++..+....+.+|+++||.|+. .|
T Consensus       275 Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            998     7888888899999999999999998876 67

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.66  E-value=2.4e-16  Score=150.62  Aligned_cols=80  Identities=31%  Similarity=0.439  Sum_probs=50.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|+++|.+|.++. ++++|++|+|++|+++|.+|..++.+++|++|+|++|+++|.+|..++++++|+.|
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  543 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL  543 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred             CCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence            45566666666666666666665 56666666666666666666666666666666666666666666666666666665


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       544 ~  544 (768)
T 3rgz_A          544 D  544 (768)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=2.6e-16  Score=128.50  Aligned_cols=132  Identities=17%  Similarity=0.113  Sum_probs=99.1

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|+|++|++++..+..+. .+++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            3678888888888865555676 788888888888888887788888888888888888888855556678888888887


Q ss_pred             CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcCC
Q 048290           83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNLE  156 (253)
Q Consensus        83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~~  156 (253)
                                         +.+|.       +++..|..+..+++|+.|||++    .+|..  ..+..+....+.+|+.
T Consensus       111 -------------------L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 -------------------LNANK-------INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             -------------------CCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             -------------------CCCCC-------CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence                               22222       3667778888899999999987    34432  3455666677889998


Q ss_pred             CCCcc
Q 048290          157 LCGLP  161 (253)
Q Consensus       157 LCg~~  161 (253)
                      -|.+.
T Consensus       165 ~c~c~  169 (220)
T 2v9t_B          165 ICDCH  169 (220)
T ss_dssp             ECSGG
T ss_pred             CCCCc
Confidence            88643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=8.8e-16  Score=126.01  Aligned_cols=130  Identities=25%  Similarity=0.215  Sum_probs=100.4

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|+|++|++++..|..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            5788999999999987788887 799999999999999766566678899999999999999977777788899999888


Q ss_pred             -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290           83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL  155 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~  155 (253)
                       +++.                           ++ .+|..+..+++|+.|||++    .+|..  ..+..+....+.+|+
T Consensus       119 Ls~N~---------------------------l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          119 MCCNK---------------------------LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCSSC---------------------------CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccCCc---------------------------cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence             3322                           13 4566777888888888887    44432  345556666688888


Q ss_pred             CCCCcc
Q 048290          156 ELCGLP  161 (253)
Q Consensus       156 ~LCg~~  161 (253)
                      .-|.++
T Consensus       171 ~~c~c~  176 (229)
T 3e6j_A          171 WDCECR  176 (229)
T ss_dssp             BCTTBG
T ss_pred             ccCCcc
Confidence            887653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=1.2e-15  Score=126.64  Aligned_cols=149  Identities=15%  Similarity=0.089  Sum_probs=112.1

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|+|++|++++..|..+. ++++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            4688999999999987777787 899999999999999988888899999999999999999977778889999999998


Q ss_pred             --CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcccc
Q 048290           83 --CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVY  151 (253)
Q Consensus        83 --~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~  151 (253)
                        .|.+.......+   +.-..+.+.+|.       +++..+..++.+++|+.|||++    .+|..  ..+..+....+
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQ-------LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCc-------CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence              444432111111   111333445554       5677777889999999999988    44432  34566667778


Q ss_pred             CCcCCCCC
Q 048290          152 AGNLELCG  159 (253)
Q Consensus       152 ~gN~~LCg  159 (253)
                      .+|+.-|.
T Consensus       187 ~~N~~~c~  194 (251)
T 3m19_A          187 FGNQFDCS  194 (251)
T ss_dssp             CSCCBCTT
T ss_pred             eCCceeCC
Confidence            89988775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.63  E-value=2e-16  Score=135.72  Aligned_cols=121  Identities=23%  Similarity=0.297  Sum_probs=92.9

Q ss_pred             CCcceEEECCC-CcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGK-NAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|++|+|++ |++++.+|..+. ++++|++|+|++|++++.+|..+..+++|++|||++|.+++.+|..+.++++|+.
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            67899999994 999989999998 8999999999999999999999999999999999999999999999999999999


Q ss_pred             cc--CCCCCcccccccccC--------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER--CSNPTIGFAKLIFVP--------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~--~n~~~~~~~~~ip~~--------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+  .|.+.    +.+|..        ..+.+.+|.       +++.+|..+..++ |+.|||++
T Consensus       154 L~L~~N~l~----~~~p~~l~~l~~~L~~L~L~~N~-------l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          154 ITFDGNRIS----GAIPDSYGSFSKLFTSMTISRNR-------LTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSCCE----EECCGGGGCCCTTCCEEECCSSE-------EEEECCGGGGGCC-CSEEECCS
T ss_pred             EECcCCccc----CcCCHHHhhhhhcCcEEECcCCe-------eeccCChHHhCCc-ccEEECcC
Confidence            88  44442    233322        122333333       4556666666655 66666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=7.9e-16  Score=125.56  Aligned_cols=130  Identities=20%  Similarity=0.109  Sum_probs=91.3

Q ss_pred             cceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .++.|+|++|++++..|. .+. .+++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|+.|+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGG-GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCcCCccCchhhhc-cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            467888888888866453 355 788888888888888877777788888888888888888877777788888888887


Q ss_pred             -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CC-CCC-CCCCCCCccccCCcC
Q 048290           83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KI-PLG-TQLQSFNASVYAGNL  155 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~i-P~~-~~l~~~~~~~~~gN~  155 (253)
                       +++.                           +++..|..+..+++|+.|||++    .+ |.. ..+..+....+.+|+
T Consensus       112 Ls~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          112 LRSNR---------------------------ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CTTSC---------------------------CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCc---------------------------CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence             3222                           3555666677777777777776    22 222 334455555677777


Q ss_pred             CCCCcc
Q 048290          156 ELCGLP  161 (253)
Q Consensus       156 ~LCg~~  161 (253)
                      .-|.++
T Consensus       165 l~c~c~  170 (220)
T 2v70_A          165 FNCNCY  170 (220)
T ss_dssp             EECSGG
T ss_pred             CcCCCc
Confidence            776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=1.9e-15  Score=127.01  Aligned_cols=150  Identities=20%  Similarity=0.177  Sum_probs=112.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++ ++ .+. .+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus        62 l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-IS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTSCCCC-CG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCC-ch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            6789999999999986 44 676 79999999999999998777778999999999999999998777888999999999


Q ss_pred             c--CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccc
Q 048290           82 R--CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASV  150 (253)
Q Consensus        82 ~--~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~  150 (253)
                      +  .|.+.......+   +.-..+.+.+|.       +++..+..++.+++|+.|+|++    .+|..  ..+..+....
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-------LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCC-------cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence            8  444432111111   111333444544       5777777788999999999987    34432  4566777777


Q ss_pred             cCCcCCCCCcc
Q 048290          151 YAGNLELCGLP  161 (253)
Q Consensus       151 ~~gN~~LCg~~  161 (253)
                      +.+|+..|.+|
T Consensus       212 l~~N~~~~~~~  222 (272)
T 3rfs_A          212 LHDNPWDCTCP  222 (272)
T ss_dssp             CCSSCBCCCTT
T ss_pred             ccCCCccccCc
Confidence            89999888654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.63  E-value=2.5e-15  Score=126.06  Aligned_cols=151  Identities=20%  Similarity=0.194  Sum_probs=89.6

Q ss_pred             CCcceEEECCCCcCccCCChh-HhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTW-TGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~-~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|++|+|++|+++. +|.. +. .+++|++|+|++|++++..+..+..+++|++|+|++|.+++..|..|.++++|+.
T Consensus        60 l~~L~~L~l~~n~l~~-i~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQT-LPAGIFK-ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY  137 (270)
T ss_dssp             CTTCCEEECCSSCCSC-CCTTTTS-SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCccCe-eChhhhc-CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence            4566666666666663 3333 33 5666666666666666555555666666777777777766666666666677776


Q ss_pred             cc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290           81 ER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS  149 (253)
Q Consensus        81 L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~  149 (253)
                      |+  .|.+.......+...   ..+.+.++.       +++..+..+..+++|+.|||++    .+|..  ..+..+...
T Consensus       138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-------LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             EECCCCcCCccCHhHccCCcccceeEecCCc-------CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            66  333321001111111   222333443       4666666788888888888887    44543  345566667


Q ss_pred             ccCCcCCCCCcc
Q 048290          150 VYAGNLELCGLP  161 (253)
Q Consensus       150 ~~~gN~~LCg~~  161 (253)
                      .+.+||+-|.+.
T Consensus       211 ~l~~N~~~c~c~  222 (270)
T 2o6q_A          211 QLQENPWDCTCN  222 (270)
T ss_dssp             ECCSSCBCCSSS
T ss_pred             EecCCCeeCCCc
Confidence            788998888653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=1.9e-15  Score=128.39  Aligned_cols=148  Identities=18%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++ +|.. . .+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus        54 l~~L~~L~L~~n~l~~-~~~~-~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTK-LQVD-G-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             CTTCCEEECTTSCCCE-EECC-S-CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCc-ccCC-C-CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence            6788888888888885 4433 4 6888888888888887 677788888888888888888887777788888888888


Q ss_pred             c--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCcccc
Q 048290           82 R--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVY  151 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~  151 (253)
                      +  .|.+.....+.+...   ..+.+.+|.       +++..+..+..+++|+.|+|++    .+|.+ .....+....+
T Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLTPTPKLEKLSLANNN-------LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSC-------CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred             ECCCCCCCccChhhcccccCCCEEECCCCc-------CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence            8  344422111111111   233445554       4666666788899999999998    56665 23445666678


Q ss_pred             CCcCCCCCc
Q 048290          152 AGNLELCGL  160 (253)
Q Consensus       152 ~gN~~LCg~  160 (253)
                      .|||+.|.+
T Consensus       203 ~~Np~~C~c  211 (290)
T 1p9a_G          203 HGNPWLCNC  211 (290)
T ss_dssp             CSCCBCCSG
T ss_pred             CCCCccCcC
Confidence            999999964

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=2.3e-15  Score=120.17  Aligned_cols=105  Identities=23%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             cceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +|+.|+|++|++++..+. .+. .+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|+.|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccc-cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            456666666666644433 244 566666666666666666666666666666666666666665555566666666665


Q ss_pred             CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                                         +.+|.       +++.+|..+..+++|+.|+|++
T Consensus       109 -------------------L~~N~-------l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A          109 -------------------LYDNQ-------ISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -------------------CCSSC-------CCEECTTSSTTCTTCCEEECTT
T ss_pred             -------------------CCCCc-------CCeeCHHHhhcCCCCCEEEeCC
Confidence                               22222       4677778888888888888876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=5e-15  Score=119.31  Aligned_cols=130  Identities=21%  Similarity=0.172  Sum_probs=98.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFD-ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhc-ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            5689999999999965555566 799999999999999976666788999999999999999977777789999999988


Q ss_pred             -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290           83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL  155 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~  155 (253)
                       .++.                           +++..+..+..+++|+.|+|++    .+|..  ..+..+....+.+|+
T Consensus       107 L~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          107 LNTNQ---------------------------LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCSSC---------------------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCCc---------------------------CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence             3322                           2444555567777777777776    34432  345556666677777


Q ss_pred             CCCCc
Q 048290          156 ELCGL  160 (253)
Q Consensus       156 ~LCg~  160 (253)
                      ..|..
T Consensus       160 ~~~~~  164 (208)
T 2o6s_A          160 WDCTC  164 (208)
T ss_dssp             BCCCT
T ss_pred             eecCC
Confidence            77654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.60  E-value=2.3e-15  Score=126.99  Aligned_cols=152  Identities=18%  Similarity=0.099  Sum_probs=80.0

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCc-CcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNK-FHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|++|+|++|.+++..|..+. .+++|++|+|++|. ++...|..+..+++|++|++++|.+++..|..+.++++|+.
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  133 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY  133 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence            44556666666666554455555 55566666666554 44444555555555555555555555555555555555555


Q ss_pred             cc--CCCCCccccc-------------------ccccC--------CCcccccceeeeeEEEeecccccccccccceeee
Q 048290           81 ER--CSNPTIGFAK-------------------LIFVP--------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCL  131 (253)
Q Consensus        81 L~--~n~~~~~~~~-------------------~ip~~--------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~L  131 (253)
                      |+  .|.+......                   .++..        ..+.+.+|.       +++..|..+..+++|+.|
T Consensus       134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-------VAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEE
T ss_pred             EECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-------ccccCHhHccCcccccEe
Confidence            55  2222110000                   11110        111222222       455667777777777777


Q ss_pred             ccCC----CCCCC--CCCCCCCccccCCcCCCCCcc
Q 048290          132 DLSR----KIPLG--TQLQSFNASVYAGNLELCGLP  161 (253)
Q Consensus       132 dLS~----~iP~~--~~l~~~~~~~~~gN~~LCg~~  161 (253)
                      ||++    .+|..  ..+..+....+.+|+..|.++
T Consensus       207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            7776    33321  345556666678888877654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=2.9e-15  Score=122.23  Aligned_cols=106  Identities=18%  Similarity=0.087  Sum_probs=95.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|+|++|++++..|..+. ++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|+.|
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            67899999999999987777888 89999999999999998888889999999999999999999889999999999999


Q ss_pred             c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      + .++.                           +++..|..+..+++|+.|+|++
T Consensus       135 ~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          135 SLYDNQ---------------------------ITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             ECTTSC---------------------------CCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCCc---------------------------CCEECHHHhcCCCCCCEEEecC
Confidence            8 3332                           3777788899999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=2.8e-15  Score=129.53  Aligned_cols=78  Identities=17%  Similarity=0.292  Sum_probs=56.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhc-------
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNN-------   74 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-------   74 (253)
                      +++|++|+|++|.++ .+|..++ .+++|++|+|++|.++ .+|..++.+++|++|+|++|++.+.+|..+..       
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             CCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            456777777777777 6777776 6777777777777777 66777777777777777777777777766543       


Q ss_pred             --cccCcccc
Q 048290           75 --FSAMTYER   82 (253)
Q Consensus        75 --l~~L~~L~   82 (253)
                        +++|+.|+
T Consensus       180 ~~l~~L~~L~  189 (328)
T 4fcg_A          180 QGLVNLQSLR  189 (328)
T ss_dssp             EESTTCCEEE
T ss_pred             ccCCCCCEEE
Confidence              66666666

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=4e-15  Score=135.63  Aligned_cols=151  Identities=20%  Similarity=0.135  Sum_probs=119.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcc--cCcccccCCCCCCEEeccCCccCCCcChh-hhccccC
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG--NIPYQLCHLGFIQVLDLSLNIISGKIPKC-FNNFSAM   78 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L   78 (253)
                      +++|++|++++|++++.+|.++. .+++|++|+|++|++++  .+|..++.+++|+.|||++|.+++.+|.. +..+++|
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            57899999999999988999988 89999999999999997  66788999999999999999999877764 8888999


Q ss_pred             cccc--CCCCCcccccccccC-CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290           79 TYER--CSNPTIGFAKLIFVP-AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS  149 (253)
Q Consensus        79 ~~L~--~n~~~~~~~~~ip~~-~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~  149 (253)
                      +.|+  .|.+.......++.. ..+.+.+|.       ++ .+|..+..+++|+.|||++    .+|..  ..+..+...
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-------l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-------IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSSC-------CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCCc-------cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence            9998  444533223333322 445556655       34 7888778999999999998    66764  345666777


Q ss_pred             ccCCcCCCCCcc
Q 048290          150 VYAGNLELCGLP  161 (253)
Q Consensus       150 ~~~gN~~LCg~~  161 (253)
                      .+.+|+..|.++
T Consensus       474 ~l~~N~~~c~c~  485 (520)
T 2z7x_B          474 WLHTNPWDCSCP  485 (520)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             ECcCCCCcccCC
Confidence            799999998754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=5.5e-15  Score=118.22  Aligned_cols=71  Identities=23%  Similarity=0.321  Sum_probs=38.6

Q ss_pred             EEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            7 VLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         7 ~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .+++++|+++ .+|..+.   ++|+.|+|++|+++ .+|..|..+++|+.|+|++|.+++..|..|.++++|+.|+
T Consensus        14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            4555555555 4554332   35555555555554 4455555555555555555555555455555555555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=5.9e-15  Score=132.15  Aligned_cols=131  Identities=21%  Similarity=0.241  Sum_probs=106.5

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|++++|++++.+|..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|+.|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            5788899999999888888887 789999999999999888888888999999999999999877788888889998888


Q ss_pred             -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290           83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL  155 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~  155 (253)
                       +++.                           +++..|..+..+++|+.|||++    .+|..  ..+..+....+.+|+
T Consensus       354 Ls~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          354 LSYNH---------------------------IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCSSC---------------------------CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCc---------------------------ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence             3222                           3666788888899999999987    45543  356667777788998


Q ss_pred             CCCCcc
Q 048290          156 ELCGLP  161 (253)
Q Consensus       156 ~LCg~~  161 (253)
                      .-|.+|
T Consensus       407 l~~~~~  412 (455)
T 3v47_A          407 WDCSCP  412 (455)
T ss_dssp             BCCCTT
T ss_pred             cccCCC
Confidence            888765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.56  E-value=4.3e-15  Score=137.77  Aligned_cols=154  Identities=13%  Similarity=-0.001  Sum_probs=117.8

Q ss_pred             CCCcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccC
Q 048290            1 NCSQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAM   78 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L   78 (253)
                      ++++|+.|++++|++++..| ..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  475 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL  475 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCeeECCCCccCCccChhhhh-ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence            36789999999999998777 5676 89999999999999999899999999999999999999998 478889999999


Q ss_pred             cccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCC-CCC
Q 048290           79 TYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQ-SFN  147 (253)
Q Consensus        79 ~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~-~~~  147 (253)
                      +.|+  .|.+.......+...   ..+.+.+|.       +++.+|..+..+++|+.|||++    .+|.. ..+. .+.
T Consensus       476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-------LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA  548 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred             CEEECCCCcCCccChhhhcccccCCEEECCCCc-------CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence            9998  444422111111111   333455554       5888899999999999999998    55654 2332 356


Q ss_pred             ccccCCcCCCCCccC
Q 048290          148 ASVYAGNLELCGLPL  162 (253)
Q Consensus       148 ~~~~~gN~~LCg~~~  162 (253)
                      ...+.+||..|.++.
T Consensus       549 ~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          549 FFNLTNNSVACICEH  563 (606)
T ss_dssp             EEECCSCCCCCSSTT
T ss_pred             EEEccCCCcccCCcc
Confidence            667899999997653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=2.2e-15  Score=145.39  Aligned_cols=146  Identities=14%  Similarity=0.044  Sum_probs=73.5

Q ss_pred             CcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCcccCcc-cccCCCCCCEEeccCCccC-----CCcChhhhcc
Q 048290            3 SQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPY-QLCHLGFIQVLDLSLNIIS-----GKIPKCFNNF   75 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l   75 (253)
                      .+++.|++++|++++.-. ..+. ++++|++|+|++|++++..+. .+..+++|+.|+|++|.++     +..|..|.++
T Consensus       401 ~~l~~L~ls~N~l~~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l  479 (844)
T 3j0a_A          401 LTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL  479 (844)
T ss_dssp             TTCCEEECCSCCCCSSTTHHHHT-TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred             cccceeecccCccccCchhhhhh-cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence            345667777777764322 2233 566677777777766644332 2344556666666666654     2333445555


Q ss_pred             ccCcccc-CC-CCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCCCCCCC
Q 048290           76 SAMTYER-CS-NPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLGTQLQS  145 (253)
Q Consensus        76 ~~L~~L~-~n-~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~~~l~~  145 (253)
                      ++|+.|+ ++ ++.......+...   ..+.+++|.       +++..+..+.  ++|+.|||++     .+|.  .|..
T Consensus       480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~  548 (844)
T 3j0a_A          480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-------LTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVS  548 (844)
T ss_dssp             CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-------CSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSS
T ss_pred             ccccEEECCCCcccccChhHccchhhhheeECCCCC-------CCccChhhhh--ccccEEECCCCcCCCCChh--HhCC
Confidence            5555555 22 2211001111100   222233333       3555554444  5677777765     3332  3555


Q ss_pred             CCccccCCcCCCCCc
Q 048290          146 FNASVYAGNLELCGL  160 (253)
Q Consensus       146 ~~~~~~~gN~~LCg~  160 (253)
                      +....+.|||+.|.+
T Consensus       549 L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          549 LSVLDITHNKFICEC  563 (844)
T ss_dssp             CCEEEEEEECCCCSS
T ss_pred             cCEEEecCCCccccc
Confidence            666667777777744

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.55  E-value=2.5e-14  Score=120.10  Aligned_cols=150  Identities=18%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccCccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAMTYE   81 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L   81 (253)
                      ++|++|+|++|++++..|..+. ++++|++|++++|.+++..+..++.+++|+.|++++|.+++ .+|..+.++++|+.|
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             cCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            3444444444444433333343 44444444444444444333344445555555555555543 234555555555555


Q ss_pred             c--CCCCCcccccccccC---C----CcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCC
Q 048290           82 R--CSNPTIGFAKLIFVP---A----GTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSF  146 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~---~----~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~  146 (253)
                      +  .|.+.......+...   .    .+.+.+|.       +++..+..+. ..+|+.|||++    .+|..  ..+..+
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-------l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-------MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-------CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-------ccccCccccC-CCcccEEECCCCceeecCHhHhcccccc
Confidence            4  222211000001000   0    11122222       2333343333 33688888887    45543  346666


Q ss_pred             CccccCCcCCCCCcc
Q 048290          147 NASVYAGNLELCGLP  161 (253)
Q Consensus       147 ~~~~~~gN~~LCg~~  161 (253)
                      ....+.+|+.-|.++
T Consensus       227 ~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          227 QKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CEEECCSSCBCCCTT
T ss_pred             cEEEccCCcccccCC
Confidence            777789999888654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=1.1e-14  Score=118.71  Aligned_cols=107  Identities=21%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|+.|+|++|++++..|..+. ++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.
T Consensus        54 ~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  132 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL  132 (220)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence            367899999999999988898998 8999999999999999766666899999999999999999998999999999999


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+ .++.                           +++..+..+..+++|+.|+|++
T Consensus       133 L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          133 LSLYDNK---------------------------LQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             EECCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCc---------------------------CCEECHHHHhCCCCCCEEEeCC
Confidence            98 3332                           3666677788899999999987

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.54  E-value=1.2e-14  Score=133.86  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=117.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcc--cCcccccCCCCCCEEeccCCccCCCcCh-hhhccccC
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG--NIPYQLCHLGFIQVLDLSLNIISGKIPK-CFNNFSAM   78 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L   78 (253)
                      +++|++|++++|++++.+|.++. ++++|++|+|++|++++  .+|..+..+++|+.|+|++|++++.+|. .+..+++|
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            57899999999999998999998 89999999999999997  3457799999999999999999986775 58889999


Q ss_pred             cccc--CCCCCcccccccccC-CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290           79 TYER--CSNPTIGFAKLIFVP-AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS  149 (253)
Q Consensus        79 ~~L~--~n~~~~~~~~~ip~~-~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~  149 (253)
                      +.|+  .|.+.......++.. ..+.+.+|.       ++ .+|..+..++.|+.|||++    .+|..  ..+..+...
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-------l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-------IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSC-------CC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCc-------Cc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence            9999  455533223333322 445555555       34 6777777999999999998    67764  455666677


Q ss_pred             ccCCcCCCCCcc
Q 048290          150 VYAGNLELCGLP  161 (253)
Q Consensus       150 ~~~gN~~LCg~~  161 (253)
                      .+.+|+.-|.++
T Consensus       503 ~l~~N~~~c~c~  514 (562)
T 3a79_B          503 WLHDNPWDCTCP  514 (562)
T ss_dssp             ECCSCCBCCCHH
T ss_pred             EecCCCcCCCcc
Confidence            799999999653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.54  E-value=9.4e-15  Score=126.18  Aligned_cols=120  Identities=16%  Similarity=0.058  Sum_probs=88.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhc---------CCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhh
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGES---------LQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF   72 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~---------l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l   72 (253)
                      +++|++|+|++|++.+.+|..+. .         +++|++|+|++|+++ .+|..++.+++|+.|+|++|.+++ +|..+
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l  225 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLA-STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI  225 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSE-EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred             CcCCCEEECCCCCCccccChhHh-hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence            67888999999888888887765 4         888999999999888 788888888999999999999884 66678


Q ss_pred             hccccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           73 NNFSAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        73 ~~l~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      ..+++|+.|+  .|++..    .+|..       ..+.+.++.       +.+.+|..+..+++|+.|||++
T Consensus       226 ~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~-------~~~~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCS-------NLLTLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             GGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCT-------TCCBCCTTGGGCTTCCEEECTT
T ss_pred             ccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCC-------chhhcchhhhcCCCCCEEeCCC
Confidence            8888888888  334422    23322       222333332       3667777777777788888776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.53  E-value=1.4e-14  Score=134.15  Aligned_cols=125  Identities=21%  Similarity=0.023  Sum_probs=94.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +++++|||++|+|++..|..|. ++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            3689999999999976667787 899999999999999988788899999999999999999977778899999999999


Q ss_pred             --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290           83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~  135 (253)
                        .|++.......+..-   ..+.+.+|.       +++ .+|..++.++.|+.|+|++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-------l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNL-------IQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSC-------CCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCc-------cccCCCchhhccchhhhhhcccC
Confidence              444422111111111   223334443       233 4567777788888888876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=2.7e-14  Score=113.90  Aligned_cols=125  Identities=22%  Similarity=0.196  Sum_probs=103.5

Q ss_pred             eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcc-cccCCCCCCEEeccCCccCCCcChhhhccccCcccc-C
Q 048290            6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPY-QLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-C   83 (253)
Q Consensus         6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~   83 (253)
                      +.+++++|+++ .+|..+.   .+|++|+|++|++++..+. .++.+++|++|+|++|++++..|..|.++++|+.|+ +
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            68999999997 7898765   3999999999999976664 489999999999999999999999999999999998 3


Q ss_pred             CCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCC-CCCCCCCccccCCcCCC
Q 048290           84 SNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLG-TQLQSFNASVYAGNLEL  157 (253)
Q Consensus        84 n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~-~~l~~~~~~~~~gN~~L  157 (253)
                      ++.                           +++..+..+..+++|+.|||++     .+|.. ..+..+....+.+|+.-
T Consensus        87 ~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENK---------------------------IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCC---------------------------CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCc---------------------------CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            332                           3677788889999999999998     23433 44566777779999998


Q ss_pred             CCcc
Q 048290          158 CGLP  161 (253)
Q Consensus       158 Cg~~  161 (253)
                      |..+
T Consensus       140 c~c~  143 (192)
T 1w8a_A          140 CNCH  143 (192)
T ss_dssp             CSGG
T ss_pred             CcCc
Confidence            8754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.52  E-value=2.7e-14  Score=121.59  Aligned_cols=152  Identities=16%  Similarity=0.072  Sum_probs=109.1

Q ss_pred             CCCcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccC
Q 048290            1 NCSQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAM   78 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L   78 (253)
                      ++++|++|++++|++++..+ ..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCEEECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            36789999999999986544 4666 79999999999999998888889999999999999999987 578889999999


Q ss_pred             cccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC-----CCCCC-CCC-CCC
Q 048290           79 TYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLG-TQL-QSF  146 (253)
Q Consensus        79 ~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~-~~l-~~~  146 (253)
                      +.|+  .|.+.......+...   ..+.+.+|.       +++..+..+..+++|+.|||++     .+|.. ..+ ..+
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-------CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-------cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence            9998  444422111111111   233444544       4666666788889999999987     23322 223 355


Q ss_pred             CccccCCcCCCCCc
Q 048290          147 NASVYAGNLELCGL  160 (253)
Q Consensus       147 ~~~~~~gN~~LCg~  160 (253)
                      ....+.+|+.-|.+
T Consensus       251 ~~L~L~~N~~~~~c  264 (306)
T 2z66_A          251 AFLNLTQNDFACTC  264 (306)
T ss_dssp             CEEECTTCCEECSG
T ss_pred             CEEEccCCCeeccc
Confidence            56668888877754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=8.3e-15  Score=128.05  Aligned_cols=151  Identities=22%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ..++.|+|++|+|++..+..+..++++|++|+|++|+|++..|..|..+++|++|||++|++++..+..|.++++|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            34778888888888655554422588888888888888877777788888888888888888866667788888888888


Q ss_pred             --CCCCCcccccccccC---CCcccccceeeeeEEEeeccccccc---ccccceeeeccCC----CCCCC--CCCCC--C
Q 048290           83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYK---STLGLVRCLDLSR----KIPLG--TQLQS--F  146 (253)
Q Consensus        83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~---~~l~~L~~LdLS~----~iP~~--~~l~~--~  146 (253)
                        .|.+.......+...   ..+.+.+|.       +++..+..+   ..+++|+.|||++    .+|..  ..+..  +
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-------l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-------ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSC-------CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCc-------CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence              444422111111111   223344444       355444445   5688999999987    33321  11111  1


Q ss_pred             CccccCCcCCCCCc
Q 048290          147 NASVYAGNLELCGL  160 (253)
Q Consensus       147 ~~~~~~gN~~LCg~  160 (253)
                      ....+.+||+-|.+
T Consensus       192 ~~l~l~~N~~~C~C  205 (361)
T 2xot_A          192 NGLYLHNNPLECDC  205 (361)
T ss_dssp             TTEECCSSCEECCH
T ss_pred             ceEEecCCCccCCc
Confidence            33568899998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=6.9e-14  Score=115.98  Aligned_cols=142  Identities=13%  Similarity=0.066  Sum_probs=105.1

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ...+.++++++.++ .+|..+.   ++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|+.|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            35678999999999 6887664   5899999999999998888999999999999999999998888999999999999


Q ss_pred             --CCCCCcccccc---cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcccc
Q 048290           83 --CSNPTIGFAKL---IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVY  151 (253)
Q Consensus        83 --~n~~~~~~~~~---ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~  151 (253)
                        .|.+.......   ++.-..+.+.+|.       +++..+..+..++.|+.|+|++    .+|..  ..+..+....+
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQ-------LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCc-------CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence              44443211111   1111333445544       5666677788899999999987    44442  34455555566


Q ss_pred             CCcC
Q 048290          152 AGNL  155 (253)
Q Consensus       152 ~gN~  155 (253)
                      .+|.
T Consensus       163 ~~N~  166 (251)
T 3m19_A          163 STNQ  166 (251)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            6663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=3.6e-14  Score=108.28  Aligned_cols=77  Identities=22%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             CcceEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            3 SQLRVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      ++|+.|++++|.++ +.+|..+. .+++|++|++++|.+++.  ..++.+++|++|+|++|.+++.+|..+..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            57999999999998 78998887 899999999999999976  789999999999999999998899999999999999


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus        94 ~   94 (149)
T 2je0_A           94 N   94 (149)
T ss_dssp             E
T ss_pred             E
Confidence            9

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.49  E-value=1.3e-14  Score=135.89  Aligned_cols=122  Identities=17%  Similarity=0.189  Sum_probs=87.8

Q ss_pred             CCCcceEEECCCCcCccC-----------------CChhHh-hcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCC
Q 048290            1 NCSQLRVLDLGKNAFFGE-----------------IPTWTG-ESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN   62 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~-----------------~p~~~~-~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N   62 (253)
                      ++++|++|+|++|+++|.                 +|..++ .++++|++|+|++|++.|.+|..++++++|++|+|++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            367888899999998875                 787764 14888999999999888888888888889999999988


Q ss_pred             c-cCC-CcChhhhcc------ccCcccc--CCCCCccccccccc--C-------CCcccccceeeeeEEEeecccccccc
Q 048290           63 I-ISG-KIPKCFNNF------SAMTYER--CSNPTIGFAKLIFV--P-------AGTGYYYKYLVNLLLTWKGSENEYKS  123 (253)
Q Consensus        63 ~-l~g-~ip~~l~~l------~~L~~L~--~n~~~~~~~~~ip~--~-------~~l~~~~~~~~~~~~~l~g~~p~~~~  123 (253)
                      + ++| .+|..++++      ++|+.|+  .|.+.     .+|.  .       ..+.+.+|.       ++|.+| .++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~-------l~g~ip-~~~  350 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQ-------LEGKLP-AFG  350 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCC-------CEEECC-CCE
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCc-------Cccchh-hhC
Confidence            8 888 888888876      8888888  44442     3443  1       222333333       355666 566


Q ss_pred             cccceeeeccCC
Q 048290          124 TLGLVRCLDLSR  135 (253)
Q Consensus       124 ~l~~L~~LdLS~  135 (253)
                      .+++|+.|+|++
T Consensus       351 ~l~~L~~L~L~~  362 (636)
T 4eco_A          351 SEIKLASLNLAY  362 (636)
T ss_dssp             EEEEESEEECCS
T ss_pred             CCCCCCEEECCC
Confidence            666666666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=9.7e-14  Score=111.72  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|++++..+..+. .+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|+.
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccCcEEECCCCccCccChhhcC-CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence            368899999999999965555566 8999999999999999777777899999999999999999777778999999999


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+ .++.                           +++..+..+..+++|+.|++++
T Consensus       129 L~l~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A          129 LRLYQNQ---------------------------LKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             EECCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCc---------------------------cceeCHHHhccCCCccEEEecC
Confidence            98 3332                           2555555677788888888876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.48  E-value=1.1e-13  Score=113.53  Aligned_cols=106  Identities=20%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|+++...+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  139 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH  139 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred             CccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence            368899999999999854445566 8999999999999999877777899999999999999999 88999999999999


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+ .++.                           +++..+..+..+++|+.|+|++
T Consensus       140 L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          140 LALDQNQ---------------------------LKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             EECCSSC---------------------------CCCCCTTTTTTCTTCCEEECTT
T ss_pred             EECCCCc---------------------------CCccCHHHHhCCCCCCEEEeeC
Confidence            98 3332                           3555566788899999999987

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.48  E-value=1.4e-13  Score=116.01  Aligned_cols=145  Identities=17%  Similarity=0.061  Sum_probs=106.4

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc-cCCCcChhhhccccCccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI-ISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L   81 (253)
                      ++|+.|+|++|++++..+..+. .+++|++|+|++|.+++..|..+..+++|++|+|++|. ++...|..+..+++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            5799999999999976667787 89999999999999998889999999999999999997 876668899999999999


Q ss_pred             c--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccc
Q 048290           82 R--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASV  150 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~  150 (253)
                      +  .|.+.......+...   ..+.+.++.       +++..+..++.+++|+.|+|++    .+|..  ..+..+....
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA-------LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCc-------ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence            9  444432111111111   233444444       4666666788888999999987    23331  2344555555


Q ss_pred             cCCcC
Q 048290          151 YAGNL  155 (253)
Q Consensus       151 ~~gN~  155 (253)
                      +.+|.
T Consensus       184 l~~n~  188 (285)
T 1ozn_A          184 LHQNR  188 (285)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            66663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.48  E-value=8.7e-14  Score=128.85  Aligned_cols=133  Identities=20%  Similarity=0.172  Sum_probs=99.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCc-ccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFH-GNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +.+++.++++.|.+++..|..+. .++.|++|+|++|.+. +.+|..|..+++|++|||++|++++..|..|.++++|+.
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence            56778888888888877777776 7888888888888744 456777888888888888888888888888888888888


Q ss_pred             ccCCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CC-CCC-CCC-CCCCccccCC
Q 048290           81 ERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KI-PLG-TQL-QSFNASVYAG  153 (253)
Q Consensus        81 L~~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~i-P~~-~~l-~~~~~~~~~g  153 (253)
                      |+                   +++|.       +++..|..+..+++|+.|||++    .+ |.. ..+ ..+....+.+
T Consensus       523 L~-------------------Ls~N~-------l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          523 LN-------------------MSHNN-------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             EE-------------------CTTSC-------CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             EE-------------------CCCCc-------CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            87                   22222       4777788889999999999998    22 322 222 4556667899


Q ss_pred             cCCCCCcc
Q 048290          154 NLELCGLP  161 (253)
Q Consensus       154 N~~LCg~~  161 (253)
                      ||+-|.+.
T Consensus       577 Np~~C~C~  584 (635)
T 4g8a_A          577 NDFACTCE  584 (635)
T ss_dssp             CCBCCSGG
T ss_pred             CCCcccCC
Confidence            99999754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.48  E-value=2.8e-14  Score=133.67  Aligned_cols=127  Identities=13%  Similarity=0.018  Sum_probs=99.2

Q ss_pred             cCccCCChhHhhcCCCccEEEccCCcCccc-----------------Cccccc--CCCCCCEEeccCCccCCCcChhhhc
Q 048290           14 AFFGEIPTWTGESLQNLIVLSLKSNKFHGN-----------------IPYQLC--HLGFIQVLDLSLNIISGKIPKCFNN   74 (253)
Q Consensus        14 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~-----------------ip~~~~--~l~~L~~LdLs~N~l~g~ip~~l~~   74 (253)
                      +++| +|.+++ ++++|++|+|++|+++|.                 +|..++  ++++|++|+|++|++.|.+|..+++
T Consensus       194 ~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          194 NITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             EEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            4556 899998 899999999999999996                 999999  9999999999999999999999999


Q ss_pred             cccCcccc--CCC-CCccccc-ccccC-------------CCcccccceeeeeEEEeeccccc--ccccccceeeeccCC
Q 048290           75 FSAMTYER--CSN-PTIGFAK-LIFVP-------------AGTGYYYKYLVNLLLTWKGSENE--YKSTLGLVRCLDLSR  135 (253)
Q Consensus        75 l~~L~~L~--~n~-~~~~~~~-~ip~~-------------~~l~~~~~~~~~~~~~l~g~~p~--~~~~l~~L~~LdLS~  135 (253)
                      +++|+.|+  .|. +    .+ .+|..             ..+.+.++.       ++ .+|.  .++.+++|+.|++++
T Consensus       272 l~~L~~L~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-------l~-~ip~~~~l~~l~~L~~L~L~~  339 (636)
T 4eco_A          272 LPEMQLINVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGYNN-------LK-TFPVETSLQKMKKLGMLECLY  339 (636)
T ss_dssp             CSSCCEEECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-------CS-SCCCHHHHTTCTTCCEEECCS
T ss_pred             CCCCCEEECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCCCc-------CC-ccCchhhhccCCCCCEEeCcC
Confidence            99999999  444 4    23 33422             334444544       45 7888  899999999999987


Q ss_pred             -----CCCCCCCCCCCCccccCCc
Q 048290          136 -----KIPLGTQLQSFNASVYAGN  154 (253)
Q Consensus       136 -----~iP~~~~l~~~~~~~~~gN  154 (253)
                           .+|.-..+..+....+.+|
T Consensus       340 N~l~g~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          340 NQLEGKLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             CCCEEECCCCEEEEEESEEECCSS
T ss_pred             CcCccchhhhCCCCCCCEEECCCC
Confidence                 5663233444555555555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=1.2e-13  Score=108.54  Aligned_cols=73  Identities=21%  Similarity=0.172  Sum_probs=37.2

Q ss_pred             eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +.+++++|+++ .+|..+   .++|+.|++++|++++..+..+..+++|++|+|++|++++..+..|.++++|+.|+
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            34555555555 344322   23555555555555544444455555555555555555544444455555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.47  E-value=1.2e-13  Score=115.92  Aligned_cols=127  Identities=16%  Similarity=0.056  Sum_probs=100.5

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|++++..|..+. .+++|++|+|++|++++..|..++.+++|++|+|++|++++..|..+..+++|+.
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence            368899999999999976666677 8999999999999999887778999999999999999999888888899999999


Q ss_pred             cc--CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER--CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~--~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+  .|.+.......+   +.-..+.+.+|.       +++..+..+..+++|+.|+|++
T Consensus       162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-------LKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCCcCccCHHHhcCCccCCEEECCCCc-------CCccCHHHHhCCcCCCEEEccC
Confidence            99  444432111111   111333445544       5788888899999999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=123.08  Aligned_cols=81  Identities=21%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|++++..+..+. ++++|++|+|++|++++..+..|..+++|+.|+|++|.++...+..|.++++|+.
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGGGT-TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCccChhhcc-CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            367788888888888866666776 7888888888888888666667888888888888888887555556666776666


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       165 L~  166 (440)
T 3zyj_A          165 LD  166 (440)
T ss_dssp             EE
T ss_pred             eC
Confidence            66

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=4.7e-14  Score=136.11  Aligned_cols=63  Identities=13%  Similarity=0.119  Sum_probs=39.9

Q ss_pred             CChhHhhcCCCccEEEccCCcCcc-----------------cCccccc--CCCCCCEEeccCCccCCCcChhhhccccCc
Q 048290           19 IPTWTGESLQNLIVLSLKSNKFHG-----------------NIPYQLC--HLGFIQVLDLSLNIISGKIPKCFNNFSAMT   79 (253)
Q Consensus        19 ~p~~~~~~l~~L~~L~L~~N~l~g-----------------~ip~~~~--~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~   79 (253)
                      +|..++ ++++|++|+|++|+|+|                 .+|..++  ++++|++|+|++|++.|.+|..|+++++|+
T Consensus       440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            555565 56666666666666666                 2666655  666666666666666666666666666666


Q ss_pred             ccc
Q 048290           80 YER   82 (253)
Q Consensus        80 ~L~   82 (253)
                      .|+
T Consensus       519 ~L~  521 (876)
T 4ecn_A          519 SLN  521 (876)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.47  E-value=1.6e-13  Score=123.20  Aligned_cols=81  Identities=22%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|+.|+|++|++++..|..+. ++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..|.++++|+.
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  175 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR  175 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCccCCcChhhcc-CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence            367888999999999877777777 7889999999999988766677888888999999888888555556777777766


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       176 L~  177 (452)
T 3zyi_A          176 LD  177 (452)
T ss_dssp             EE
T ss_pred             Ee
Confidence            66

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.5e-13  Score=106.94  Aligned_cols=78  Identities=26%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             CCcceEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      .++|+.|++++|+++ +.+|..+. .+++|++|+|++|.+++.  ..+..+++|++|+|++|.+++.+|..+.++++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            367999999999998 78998887 899999999999999976  78999999999999999999889999999999999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       100 L~  101 (168)
T 2ell_A          100 LN  101 (168)
T ss_dssp             EE
T ss_pred             Ee
Confidence            98

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.6e-13  Score=107.46  Aligned_cols=101  Identities=19%  Similarity=0.119  Sum_probs=84.9

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-   82 (253)
                      ..+.+|+++|+++ .+|..+   .++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+ 
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            3578999999998 588765   37899999999999988899999999999999999999977777889999999998 


Q ss_pred             CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +++.                           +++..+..+..+++|+.|+|++
T Consensus        86 ~~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           86 NDNQ---------------------------LKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSSC---------------------------CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCc---------------------------cCEeCHHHhcCCCCCCEEEeCC
Confidence            3332                           3666666788899999999876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.45  E-value=1.6e-13  Score=125.99  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=107.1

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc-ccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP-YQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|++|++++|.+++ +|..+. .+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+.++++|+.
T Consensus       372 ~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          372 TTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             CSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            6788888888888885 444466 78888888888888887665 46788888888888888888888888888888888


Q ss_pred             cc-CC-CCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCC
Q 048290           81 ER-CS-NPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQS  145 (253)
Q Consensus        81 L~-~n-~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~  145 (253)
                      |+ .+ .+.   .+.+|..       ..+.+.++.       +++..|..+..+++|+.||+++    .+|..  ..+..
T Consensus       450 L~l~~n~l~---~~~~p~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  519 (570)
T 2z63_A          450 LKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQ-------LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS  519 (570)
T ss_dssp             EECTTCEEG---GGEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             EECcCCcCc---cccchhhhhcccCCCEEECCCCc-------cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence            88 33 331   1223332       223344444       5778888999999999999987    34432  45566


Q ss_pred             CCccccCCcCCCCCcc
Q 048290          146 FNASVYAGNLELCGLP  161 (253)
Q Consensus       146 ~~~~~~~gN~~LCg~~  161 (253)
                      +....+.+|+..|.+|
T Consensus       520 L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          520 LQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CCEEECCSSCBCCCTT
T ss_pred             CcEEEecCCcccCCCc
Confidence            6777788998888644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=3.6e-13  Score=112.82  Aligned_cols=127  Identities=16%  Similarity=0.060  Sum_probs=98.3

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|++++..+..+. .+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence            368899999999999965555666 8999999999999999888888999999999999999999777777999999999


Q ss_pred             cc-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+ . |.+.......+...   ..+.+.+|.       +++..+..+..+++|+.|+|++
T Consensus       162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-------LKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEECCS
T ss_pred             eEecCCcCcEeChhHhccCCCcCEEECCCCc-------CCcCCHHHhccccCCCEEEecC
Confidence            99 4 44432111112211   233444444       5666677788999999999987

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.44  E-value=1.2e-13  Score=128.06  Aligned_cols=152  Identities=17%  Similarity=0.055  Sum_probs=113.0

Q ss_pred             CCCcceEEECCCCcCccCCChh-HhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCC---cChhhhccc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTW-TGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGK---IPKCFNNFS   76 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~-~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~---ip~~l~~l~   76 (253)
                      ++++|+.|++++|++++..|.. +. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++.   .+..+..++
T Consensus       398 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~  476 (606)
T 3t6q_A          398 ECPQLELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG  476 (606)
T ss_dssp             TCTTCSEEECTTCCEECCTTCCTTT-TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred             CCccCCeEECCCCcCCCcccchhhh-CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence            3678999999999999876654 66 899999999999999988888899999999999999999873   236788999


Q ss_pred             cCcccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCC
Q 048290           77 AMTYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQS  145 (253)
Q Consensus        77 ~L~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~  145 (253)
                      +|+.|+  .|.+.......+...   ..+.+.+|.       +++..|+.+..++.| .|||++    .+|..  ..+..
T Consensus       477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~  548 (606)
T 3t6q_A          477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-------LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ  548 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred             CccEEECCCCccCccChhhhccccCCCEEECCCCc-------cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence            999998  444432111111111   333455554       688899999999999 999988    23322  34556


Q ss_pred             CCccccCCcCCCCCcc
Q 048290          146 FNASVYAGNLELCGLP  161 (253)
Q Consensus       146 ~~~~~~~gN~~LCg~~  161 (253)
                      +....+.|||..|.++
T Consensus       549 L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          549 QRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SSEEECTTCCEECSGG
T ss_pred             CCEEeCCCCCccccCC
Confidence            6677789999988654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.44  E-value=2.6e-13  Score=108.50  Aligned_cols=75  Identities=9%  Similarity=0.072  Sum_probs=49.3

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|++++|.++ .+| .+. .+++|++|++++|.++  .++.+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            45667777777776 455 455 5777777777777554  234566677777777777777666666666677777666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.43  E-value=3.9e-13  Score=120.68  Aligned_cols=79  Identities=22%  Similarity=0.100  Sum_probs=73.9

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|+|++|++++..|..+. ++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            4789999999999988888888 899999999999999998889999999999999999999977777899999999999

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=2.9e-13  Score=117.62  Aligned_cols=78  Identities=21%  Similarity=0.128  Sum_probs=33.3

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcCh--hhhccccCcc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPK--CFNNFSAMTY   80 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~   80 (253)
                      ++|++|+|++|++++..|..+. ++++|++|+|++|++++..+..++++++|++|+|++|++++ +|.  .+.++++|+.
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE
Confidence            3444444444444433333343 44444444444444443222224444444444444444442 222  3444444444


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       154 L~  155 (353)
T 2z80_A          154 LR  155 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.42  E-value=3.1e-13  Score=125.22  Aligned_cols=125  Identities=17%  Similarity=0.019  Sum_probs=98.7

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|||++|++++..|..+. ++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            5789999999999987777887 899999999999999988888999999999999999999988899999999999999


Q ss_pred             --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290           83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~  135 (253)
                        .|.+.......+...   ..+.+.++.       +++ .+|..++.+++|+.|||++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNF-------IHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSC-------CCCCCCCGGGGTCTTCCEEECCS
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCc-------ccceechHhHhhcCCCCEEEccC
Confidence              444422111111111   233344443       344 5789999999999999987

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.42  E-value=2.6e-13  Score=118.47  Aligned_cols=119  Identities=15%  Similarity=0.032  Sum_probs=91.3

Q ss_pred             eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCccccc-CCCCCCEEeccCCccCCCcChhhhccccCcccc--
Q 048290            6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC-HLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER--   82 (253)
Q Consensus         6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~-~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~--   82 (253)
                      +.+++++|+++ .+|..+.   ..++.|+|++|+|++..+..+. .+++|+.|+|++|++++..|..|.++++|+.|+  
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            57999999999 6887654   4689999999999988787787 999999999999999987788999999999999  


Q ss_pred             CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 ~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      .|.+.......+...   ..+.+.+|.       +++..|..+..+++|+.|+|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~L~~  145 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNH-------IVVVDRNAFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCc-------ccEECHHHhCCcccCCEEECCC
Confidence            444422111111111   233445554       5677788888899999999987

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.42  E-value=7.9e-13  Score=103.69  Aligned_cols=105  Identities=18%  Similarity=0.104  Sum_probs=87.7

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|++++|++++..+..+. .+++|++|+|++|++++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            5799999999999965555666 899999999999999977777789999999999999999987778889999999998


Q ss_pred             -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                       .++.                           +++..+..+..+++|+.|+|++
T Consensus       107 l~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A          107 LDTNQ---------------------------LKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred             CcCCc---------------------------ceEeCHHHhcCCcccCEEEecC
Confidence             3322                           2555555667788889888864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=3.8e-13  Score=112.79  Aligned_cols=125  Identities=21%  Similarity=0.023  Sum_probs=97.2

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|+|++|++++..+..+. ++++|++|+|++|++++..+..+..+++|++|+|++|.+++..|..|.++++|+.|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTT-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhc-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            3589999999999976666787 899999999999999987778899999999999999999988888999999999998


Q ss_pred             --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290           83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~  135 (253)
                        .|.+.......+...   ..+.+.+|.       +++ .+|..+..+++|+.|||++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNL-------IQSFKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSC-------CCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCc-------cceecCchhhccCCCCCEEECCC
Confidence              444422111111111   233444444       344 3688999999999999997

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.42  E-value=5.7e-13  Score=125.17  Aligned_cols=80  Identities=26%  Similarity=0.301  Sum_probs=49.0

Q ss_pred             CCcceEEECCCCcCccCCC-hhHhhcCCCccEEEccCCcCc--------------------------ccCcccccCCCCC
Q 048290            2 CSQLRVLDLGKNAFFGEIP-TWTGESLQNLIVLSLKSNKFH--------------------------GNIPYQLCHLGFI   54 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~--------------------------g~ip~~~~~l~~L   54 (253)
                      +++|+.|+|++|.+++.+| ..+. ++++|++|++++|++.                          +.+|..+..+++|
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L  482 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL  482 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGT-TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred             CCCCCEEeCCCCcCccccCccccc-CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence            4556666666666655544 3333 4555555555555543                          3445566667777


Q ss_pred             CEEeccCCccCCCcChhhhccccCcccc
Q 048290           55 QVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus        55 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +.|+|++|++++..|..|.++++|+.|+
T Consensus       483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~  510 (680)
T 1ziw_A          483 TILDLSNNNIANINDDMLEGLEKLEILD  510 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEECCCCCCCcCChhhhccccccCEEe
Confidence            7777777777766666677777777776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.42  E-value=5.4e-13  Score=119.36  Aligned_cols=144  Identities=18%  Similarity=0.041  Sum_probs=100.6

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++++.|+|++|++++..+..+. ++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            4689999999999987778888 899999999999999988889999999999999999999977777899999999999


Q ss_pred             -C-CCCCccccccc---ccCCCccccc-ceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccC
Q 048290           83 -C-SNPTIGFAKLI---FVPAGTGYYY-KYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYA  152 (253)
Q Consensus        83 -~-n~~~~~~~~~i---p~~~~l~~~~-~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~  152 (253)
                       . |.+.......+   +.-..+.+.+ +.       +....+..+..+++|+.|+|++    .+|.-..+..+....+.
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~-------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKR-------LSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS  215 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTT-------CCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCC-------cceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECC
Confidence             4 44422001011   1112222222 11       2333344567777777777776    44543444444444444


Q ss_pred             Cc
Q 048290          153 GN  154 (253)
Q Consensus       153 gN  154 (253)
                      +|
T Consensus       216 ~N  217 (440)
T 3zyj_A          216 GN  217 (440)
T ss_dssp             TS
T ss_pred             CC
Confidence            44

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.41  E-value=3e-13  Score=120.99  Aligned_cols=107  Identities=21%  Similarity=0.136  Sum_probs=95.1

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|+.|+|++|++++..|..+. ++++|++|+|++|.+++..|..+..+++|+.|||++|++++..|..|.++++|+.
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            368899999999999988888888 8999999999999999888999999999999999999999888999999999999


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+ .++.                           +++..+..+..+++|+.|++++
T Consensus       376 L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          376 LALDTNQ---------------------------LKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             EECCSSC---------------------------CSCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCc---------------------------cccCCHhHhccCCcccEEEccC
Confidence            98 3332                           3555666778899999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=1.4e-13  Score=132.88  Aligned_cols=81  Identities=16%  Similarity=0.177  Sum_probs=63.6

Q ss_pred             CCcceEEECCCCcCcc-----------------CCChhHh-hcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc
Q 048290            2 CSQLRVLDLGKNAFFG-----------------EIPTWTG-ESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI   63 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g-----------------~~p~~~~-~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~   63 (253)
                      |++|++|+|++|+++|                 .+|..++ .++++|++|+|++|++.|.+|..++++++|+.|+|++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            6778888888888887                 3777642 158888888888888888888888888888888888887


Q ss_pred             -cCC-CcChhhhccc-------cCcccc
Q 048290           64 -ISG-KIPKCFNNFS-------AMTYER   82 (253)
Q Consensus        64 -l~g-~ip~~l~~l~-------~L~~L~   82 (253)
                       ++| .+|..+++++       +|+.|+
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~  554 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFY  554 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred             CcccccchHHHHhhhhcccccCCccEEE
Confidence             887 7887777776       777777

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.41  E-value=1.4e-13  Score=124.95  Aligned_cols=145  Identities=14%  Similarity=-0.056  Sum_probs=105.5

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhh-ccccCccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFN-NFSAMTYE   81 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~L   81 (253)
                      ++|+.|+|++|.+++..+   . .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. ++++|+.|
T Consensus        99 ~~L~~L~L~~N~l~~~~~---~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC---S-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE---C-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             CCcCEEECcCCcCCCCCc---c-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence            456777777777775433   2 478899999999999998888999999999999999999998888876 78999999


Q ss_pred             c-C-CCCCcccccc--cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCccccC
Q 048290           82 R-C-SNPTIGFAKL--IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVYA  152 (253)
Q Consensus        82 ~-~-n~~~~~~~~~--ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~~  152 (253)
                      + + |.+.. ....  ++.-..+.+++|.       +++..| .+..++.|+.|||++    .+|.. ..+..+....+.
T Consensus       175 ~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~-------l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          175 NLQYNFIYD-VKGQVVFAKLKTLDLSSNK-------LAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             ECTTSCCCE-EECCCCCTTCCEEECCSSC-------CCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred             ecCCCcccc-ccccccCCCCCEEECCCCC-------CCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence            8 4 44422 1110  1111334455555       466444 488999999999998    45554 445667777899


Q ss_pred             CcCCCCCc
Q 048290          153 GNLELCGL  160 (253)
Q Consensus       153 gN~~LCg~  160 (253)
                      +|+..|+.
T Consensus       246 ~N~l~c~~  253 (487)
T 3oja_A          246 GNGFHCGT  253 (487)
T ss_dssp             TCCBCHHH
T ss_pred             CCCCcCcc
Confidence            99999864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=4.7e-13  Score=124.06  Aligned_cols=125  Identities=11%  Similarity=-0.085  Sum_probs=94.4

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ..+++|||++|.+++..|..+. ++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|+.|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTST-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCChhHhc-cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            4689999999999987788888 899999999999999998899999999999999999999988899999999999999


Q ss_pred             -C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 -C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 -~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                       . |.+.......+...   ..+.+.+|.       +++..+..+..+++|+.||+++
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~  162 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNH-------ISSIKLPKGFPTEKLKVLDFQN  162 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSC-------CCCCCCCTTCCCTTCCEEECCS
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCc-------ccccCcccccCCcccCEEEccc
Confidence             4 44422001111111   223344443       3553323333488888888887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.40  E-value=3.3e-13  Score=121.71  Aligned_cols=78  Identities=26%  Similarity=0.184  Sum_probs=36.4

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +++.|||++|++++..|..+. ++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            344455555555443344444 444455555555444444444444444444444444444433333344444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=8e-13  Score=122.81  Aligned_cols=80  Identities=18%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|.+++..|..++ ++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..|+++++|+.|
T Consensus        98 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCCCCHHHHc-CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence            56777788888887766666666 67888888888888875545556778888888888888887777778888888877


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       177 ~  177 (597)
T 3oja_B          177 Q  177 (597)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=2.7e-13  Score=115.97  Aligned_cols=79  Identities=19%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCcceEEECCCCcCccCCChhH--hhcCCCccEEEccCCcCcccCcccccCC-----CCCCEEeccCCccCCCcChhhhc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWT--GESLQNLIVLSLKSNKFHGNIPYQLCHL-----GFIQVLDLSLNIISGKIPKCFNN   74 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~--~~~l~~L~~L~L~~N~l~g~ip~~~~~l-----~~L~~LdLs~N~l~g~ip~~l~~   74 (253)
                      +++|++|+|++|++++.+|..+  . .+++|++|+|++|++++. |..++.+     ++|++|+|++|++++..|..|+.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEA-TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSC-CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHh-cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            5678888888888887777765  5 688888888888888776 7766666     78888888888888777778888


Q ss_pred             cccCcccc
Q 048290           75 FSAMTYER   82 (253)
Q Consensus        75 l~~L~~L~   82 (253)
                      +++|+.|+
T Consensus       172 l~~L~~L~  179 (312)
T 1wwl_A          172 FPALSTLD  179 (312)
T ss_dssp             CSSCCEEE
T ss_pred             CCCCCEEE
Confidence            88888887

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.40  E-value=9.1e-13  Score=111.79  Aligned_cols=142  Identities=16%  Similarity=0.096  Sum_probs=87.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++++.|+|++|++++..|..+. .+++|++|+|++|.+++. |.. +.+++|+.|+|++|+++ .+|..+..+++|+.|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            3567777777777766566666 677777777777777753 322 67777888888888777 6777777778888777


Q ss_pred             --CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcccc
Q 048290           83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVY  151 (253)
Q Consensus        83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~  151 (253)
                        .|.+.....+.+...   ..+.+.+|.       +++..+..+..+++|+.|+|++    .+|.+  ..+..+....+
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNE-------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCC-------CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence              333322111111111   223344444       4666666677788888888876    45543  23444555555


Q ss_pred             CCcC
Q 048290          152 AGNL  155 (253)
Q Consensus       152 ~gN~  155 (253)
                      .+|.
T Consensus       180 ~~N~  183 (290)
T 1p9a_G          180 QENS  183 (290)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=4.1e-13  Score=127.60  Aligned_cols=80  Identities=25%  Similarity=0.325  Sum_probs=72.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      ++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.|+ .+|..|+.|++|++|||++|.|+ .+|..|+++++|+.|
T Consensus       223 l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          223 DQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             CCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            578999999999998 7898888 8999999999999998 88999999999999999999999 889999999999999


Q ss_pred             c-CCC
Q 048290           82 R-CSN   85 (253)
Q Consensus        82 ~-~n~   85 (253)
                      + .++
T Consensus       299 ~L~~N  303 (727)
T 4b8c_D          299 YFFDN  303 (727)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            8 444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.39  E-value=1.3e-13  Score=117.92  Aligned_cols=143  Identities=17%  Similarity=0.167  Sum_probs=97.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcC-----CCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc--Chhh--
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESL-----QNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI--PKCF--   72 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l-----~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i--p~~l--   72 (253)
                      +++|++|+|++|++++. |..+. .+     ++|++|+|++|++++..|..++.+++|+.|||++|++.|.+  |..+  
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            67899999999999976 87777 66     89999999999998888888999999999999999988763  4444  


Q ss_pred             hccccCcccc--CCCCCc--cccccc----ccCCCcccccceeeeeEEEeecccc-cccccccceeeeccCC----CCCC
Q 048290           73 NNFSAMTYER--CSNPTI--GFAKLI----FVPAGTGYYYKYLVNLLLTWKGSEN-EYKSTLGLVRCLDLSR----KIPL  139 (253)
Q Consensus        73 ~~l~~L~~L~--~n~~~~--~~~~~i----p~~~~l~~~~~~~~~~~~~l~g~~p-~~~~~l~~L~~LdLS~----~iP~  139 (253)
                      ..+++|+.|+  .|.+..  .....+    +.-..+.+.+|.       +++.+| ..+..++.|+.|||++    .||.
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~  270 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-------LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK  270 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-------CCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-------CCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence            8888999988  444421  000011    111334455554       466554 3455677888888887    4554


Q ss_pred             CCCCCCCCccccCCc
Q 048290          140 GTQLQSFNASVYAGN  154 (253)
Q Consensus       140 ~~~l~~~~~~~~~gN  154 (253)
                      .-. ..+....+.+|
T Consensus       271 ~~~-~~L~~L~Ls~N  284 (312)
T 1wwl_A          271 GLP-AKLSVLDLSYN  284 (312)
T ss_dssp             SCC-SEEEEEECCSS
T ss_pred             hcc-CCceEEECCCC
Confidence            321 34444445555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=7.1e-13  Score=104.13  Aligned_cols=100  Identities=16%  Similarity=0.106  Sum_probs=82.2

Q ss_pred             ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-C
Q 048290            5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-C   83 (253)
Q Consensus         5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~   83 (253)
                      -+.+++++|+++ .+|..+.   ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|.++++|+.|+ .
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            367999999997 7887653   7899999999999988888999999999999999999976666788999999988 3


Q ss_pred             CCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           84 SNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        84 n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +|.                           +++..+..+..+++|+.|+|++
T Consensus        90 ~N~---------------------------l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           90 DNH---------------------------LKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             SSC---------------------------CCCCCTTTTTTCTTCSEEECCS
T ss_pred             CCc---------------------------cceeCHHHhccccCCCEEEeCC
Confidence            322                           3555556688888999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.39  E-value=7.1e-13  Score=112.72  Aligned_cols=142  Identities=16%  Similarity=0.103  Sum_probs=106.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc-ccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP-YQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|++|+|++|.++ .+|..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            678999999999998 5787787 89999999999999997655 57999999999999999999999999999999999


Q ss_pred             cc-CCC-CCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCC
Q 048290           81 ER-CSN-PTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQS  145 (253)
Q Consensus        81 L~-~n~-~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~  145 (253)
                      |+ .++ +..   ..+|..       ..+.+.++.       +++..|..+..+++|+.|+|++    .+|..  ..+..
T Consensus       155 L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          155 LKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQ-------LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             EECTTCEEGG---GEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             EECCCCcccc---ccchhHHhhCcCCCEEECCCCC-------cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            98 433 311   012222       233444444       5677788888889999999987    23321  23445


Q ss_pred             CCccccCCcC
Q 048290          146 FNASVYAGNL  155 (253)
Q Consensus       146 ~~~~~~~gN~  155 (253)
                      +....+.+|.
T Consensus       225 L~~L~L~~N~  234 (306)
T 2z66_A          225 LQVLDYSLNH  234 (306)
T ss_dssp             CCEEECTTSC
T ss_pred             CCEeECCCCC
Confidence            5555566664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.38  E-value=4e-13  Score=110.41  Aligned_cols=79  Identities=9%  Similarity=0.070  Sum_probs=65.9

Q ss_pred             CCCcceEEECCCCc-CccCCChhHhhcCCCccEEEccC-CcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccC
Q 048290            1 NCSQLRVLDLGKNA-FFGEIPTWTGESLQNLIVLSLKS-NKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAM   78 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~-l~g~~p~~~~~~l~~L~~L~L~~-N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L   78 (253)
                      ++++|++|++++|+ +++..+..+. ++++|++|+|++ |++++..+..|..+++|+.|++++|.+++ +|. +..+++|
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L  129 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFY-NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST  129 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEE-SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcC-CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence            36789999999997 8755555676 899999999998 99997777788999999999999999985 776 8888888


Q ss_pred             c---ccc
Q 048290           79 T---YER   82 (253)
Q Consensus        79 ~---~L~   82 (253)
                      +   .|+
T Consensus       130 ~~L~~L~  136 (239)
T 2xwt_C          130 DIFFILE  136 (239)
T ss_dssp             CSEEEEE
T ss_pred             ccccEEE
Confidence            7   777

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.38  E-value=5.7e-13  Score=120.13  Aligned_cols=149  Identities=18%  Similarity=0.030  Sum_probs=109.6

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|.+++..|..+. ++++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|+.
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            468999999999999988898998 8999999999999999766667899999999999999999888999999999999


Q ss_pred             cc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcc
Q 048290           81 ER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNAS  149 (253)
Q Consensus        81 L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~  149 (253)
                      |+  .|.+.......+...   ..+.+.++.       +++..+..+..+++|+.|+|++    .++..  ..+..+...
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  205 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-------LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL  205 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCC-------CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCc-------CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence            99  444422111111111   223344443       4666667788999999999987    22221  334445555


Q ss_pred             ccCCcCCC
Q 048290          150 VYAGNLEL  157 (253)
Q Consensus       150 ~~~gN~~L  157 (253)
                      .+.+|+.+
T Consensus       206 ~l~~~~~~  213 (477)
T 2id5_A          206 EISHWPYL  213 (477)
T ss_dssp             EEECCTTC
T ss_pred             eCCCCccc
Confidence            56665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.37  E-value=2.5e-13  Score=105.61  Aligned_cols=104  Identities=16%  Similarity=0.104  Sum_probs=85.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc-ChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI-PKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~   80 (253)
                      +++|++|+|++|.+++.  ..+. .+++|++|+|++|++++.+|..+..+++|++|+|++|.+++.. +..+..+++|+.
T Consensus        48 l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV--SNLP-KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGCCEEEEESSCCCCC--SSCC-CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred             CCCCCEEeCcCCCCCCh--hhhc-cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence            57899999999999965  6677 8999999999999999888888888999999999999998643 378999999999


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccc---cccccccceeeeccCC
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSEN---EYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p---~~~~~l~~L~~LdLS~  135 (253)
                      |+ .++.                           +++..+   ..+..+++|+.||+++
T Consensus       125 L~l~~N~---------------------------l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          125 LDLFNCE---------------------------VTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             EECCSSG---------------------------GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             EEeeCCc---------------------------CcchHHHHHHHHHhCccCcEecCCC
Confidence            88 3332                           243333   4678889999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=3.7e-12  Score=109.45  Aligned_cols=77  Identities=23%  Similarity=0.207  Sum_probs=35.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++..|..+. .+++|++|+|++|+++ .+|..+.  ++|+.|++++|.+++..+..+.++++|+.|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence            34455555555555544444444 4555555555555444 2332221  233333333333433333445556666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       151 ~  151 (330)
T 1xku_A          151 E  151 (330)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.36  E-value=1.5e-12  Score=120.95  Aligned_cols=124  Identities=14%  Similarity=0.103  Sum_probs=74.8

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .+++.|++++|.++...+..+. ++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|+.|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHH-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHc-cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            5566777777777643333344 677777777777777766666777777777777777777766666677777777776


Q ss_pred             --CCCCCcccccc----cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 --CSNPTIGFAKL----IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 --~n~~~~~~~~~----ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                        .|.+.. .+..    ++.-..+.+.+|.       +++..|..++.+++|+.|+|++
T Consensus       130 L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~  180 (597)
T 3oja_B          130 LERNDLSS-LPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSS  180 (597)
T ss_dssp             CCSSCCCC-CCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTTTCTTCCEEECTT
T ss_pred             eeCCCCCC-CCHHHhccCCCCCEEEeeCCc-------CCCCChhhhhcCCcCcEEECcC
Confidence              333321 1111    0110222333333       4666677777777777777776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=1.2e-12  Score=102.29  Aligned_cols=79  Identities=22%  Similarity=0.143  Sum_probs=72.9

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|+|++|+|++..|..+. ++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|.++++|+.|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            5789999999999987788888 899999999999999987777789999999999999999987777899999999998

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=1.6e-12  Score=101.93  Aligned_cols=78  Identities=18%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++.+|+.|++++|+++ .+|. +....++|++|+|++|.+++.  ..+..+++|+.|+|++|.+++..|..+..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3678999999999999 5665 442345999999999999975  68999999999999999999655566799999999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus        93 L~   94 (176)
T 1a9n_A           93 LI   94 (176)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=1.3e-12  Score=120.75  Aligned_cols=99  Identities=21%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-   82 (253)
                      .|+.|+|++|++++ +|. ++ .+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .++++++|+.|+ 
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            58899999999996 786 87 8999999999999999 889999999999999999999996 77 899999999998 


Q ss_pred             CCCCCcccccccccCCCcccccceeeeeEEEeeccc-ccccccccceeeeccCC
Q 048290           83 CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSE-NEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 ~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~-p~~~~~l~~L~~LdLS~  135 (253)
                      ++|.                           +++.+ |..++.+++|+.|||++
T Consensus       516 s~N~---------------------------l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          516 CNNR---------------------------LQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CSSC---------------------------CCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CCCC---------------------------CCCCCCcHHHhcCCCCCEEEecC
Confidence            3332                           36666 88899999999999986

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.36  E-value=5.7e-13  Score=121.95  Aligned_cols=79  Identities=28%  Similarity=0.240  Sum_probs=64.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|||++|++++..|..+. ++++|++|+|++|++++..|..|+.+++|++|||++|.+++..|..|+++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            4678888888888877777777 788888888888888877777888888888888888888877777788888888887

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.35  E-value=2.9e-12  Score=112.69  Aligned_cols=80  Identities=18%  Similarity=0.107  Sum_probs=55.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++..|..+. ++++|++|+|++|.++...+..|..+++|++|++++|.+++..|..+..+++|+.|
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  170 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred             CCCcCEEECCCCCCCcCCHHHhc-CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence            56677777777777765566566 67777777777777774333345777777777777777776666677777777777


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       171 ~  171 (390)
T 3o6n_A          171 Q  171 (390)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=113.43  Aligned_cols=121  Identities=20%  Similarity=0.137  Sum_probs=90.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|+|++|++++..+..+. ++++|++|+|++|++++..|..|.++++|++|||++|++++..+..+.++++|+.|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQ-RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhc-cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            4799999999999976565787 899999999999999988888999999999999999999965556699999999999


Q ss_pred             -C-CCCCccccccccc-C--------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 -C-SNPTIGFAKLIFV-P--------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 -~-n~~~~~~~~~ip~-~--------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                       . |.+.     .+|. .        ..+.+.++.      .+.+..+..+..++.|+.|++++
T Consensus       131 L~~n~l~-----~l~~~~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          131 LLGNPYK-----TLGETSLFSHLTKLQILRVGNMD------TFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             CTTCCCS-----SSCSSCSCTTCTTCCEEEEEESS------SCCEECTTTTTTCCEEEEEEEEE
T ss_pred             CCCCCCc-----ccCchhhhccCCCCcEEECCCCc------cccccCHHHccCCCCCCEEECCC
Confidence             4 4442     2332 1        222233320      02344455666666777777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=1.7e-12  Score=101.95  Aligned_cols=79  Identities=24%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|+|++|++++..|..+. ++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            5789999999999987788888 899999999999999986666689999999999999999976666799999999998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.34  E-value=6.6e-13  Score=121.53  Aligned_cols=107  Identities=19%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC-CcChhhhccccCc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG-KIPKCFNNFSAMT   79 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~   79 (253)
                      ++++|++|+|++|++++..|..+. ++++|++|+|++|++++..|..|+++++|++|+|++|.+++ .+|..++++++|+
T Consensus        48 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           48 ACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             cCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            367788888888888877777777 78888888888888887777778888888888888888876 4567788888888


Q ss_pred             ccc--CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           80 YER--CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        80 ~L~--~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      .|+  .|..                           +....+..+..+++|+.|++++
T Consensus       127 ~L~L~~n~~---------------------------~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A          127 TLRIGNVET---------------------------FSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEEEEESSS---------------------------CCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcc---------------------------ccccCHhhhhcccccCeeeccC
Confidence            877  2222                           1222335778888899998876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.34  E-value=1.2e-12  Score=104.59  Aligned_cols=123  Identities=14%  Similarity=0.033  Sum_probs=94.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|++++|.++  .++.+. .+++|++|++++|.+++..|..++.+++|++|+|++|.+++..|..+..+++|+.|
T Consensus        65 l~~L~~L~l~~n~~~--~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT--NYNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             CTTCSEEEEESCCCS--CCGGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             CCCCCEEEccCCCCC--cchhhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            678999999999776  344777 89999999999999998889999999999999999999998889999999999999


Q ss_pred             c-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCCcC
Q 048290           82 R-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAGNL  155 (253)
Q Consensus        82 ~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~gN~  155 (253)
                      + .++.                           ..+.+| .+..+++|+.|++++    .+|.-..+..+....+.+|+
T Consensus       142 ~L~~n~---------------------------~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          142 DLSYNG---------------------------AITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSCT---------------------------BCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred             EccCCC---------------------------CccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence            8 3331                           012233 466777788888777    34433344555555566664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=118.87  Aligned_cols=125  Identities=21%  Similarity=0.023  Sum_probs=97.4

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++++.|||++|++++..+..+. ++++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTT-TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhh-CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            4689999999999987777887 899999999999999988888899999999999999999987788999999999999


Q ss_pred             --CCCCCcccccccccC---CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290           83 --CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 --~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~  135 (253)
                        .|.+.......+..-   ..+.+.++.       +++ .+|..++.+++|+.||+++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-------l~~~~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNL-------IQSFKLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSC-------CCCCCCCGGGGGCTTCCEEECTT
T ss_pred             ccccccccCCCccccccccccEEecCCCc-------cceecChhhhcccCCCCEEeCcC
Confidence              444422000011111   233344443       355 4688999999999999987

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=1.9e-12  Score=119.75  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc-ChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI-PKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~   80 (253)
                      +++|+.|+|++|+++ .+|..++ ++++|+.|+|++|+|++ +| .++.+++|+.|+|++|++++.+ |..++.+++|+.
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             cccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            678999999999999 8999998 89999999999999997 67 8999999999999999999887 999999999999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       538 L~  539 (567)
T 1dce_A          538 LN  539 (567)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.32  E-value=2.8e-12  Score=120.42  Aligned_cols=80  Identities=24%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|||++|.+++..|..+. ++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|+.|
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  126 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL  126 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred             CCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence            45666666666666665566665 56666666666666664444456666666666666666665555666666666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       127 ~  127 (680)
T 1ziw_A          127 D  127 (680)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.32  E-value=2.5e-12  Score=109.79  Aligned_cols=79  Identities=19%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             CcceEEECCCCcCccCCChhH--hhcCCCccEEEccCCcCcccCc----ccccCCCCCCEEeccCCccCCCcChhhhccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWT--GESLQNLIVLSLKSNKFHGNIP----YQLCHLGFIQVLDLSLNIISGKIPKCFNNFS   76 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~--~~~l~~L~~L~L~~N~l~g~ip----~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~   76 (253)
                      ++|++|+|++|++++..|..+  . .+++|++|+|++|.+++..|    ..+..+++|++|+|++|.+++..|..++.++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEA-TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSC-CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhc-cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            346666666666666555554  4 45566666666666555433    2234455555555555555555555555555


Q ss_pred             cCcccc
Q 048290           77 AMTYER   82 (253)
Q Consensus        77 ~L~~L~   82 (253)
                      +|+.|+
T Consensus       170 ~L~~L~  175 (310)
T 4glp_A          170 ALTSLD  175 (310)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.31  E-value=3.7e-12  Score=111.94  Aligned_cols=125  Identities=15%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      ++++++|++++|.++ .+|..+...+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|+.|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            356677777777776 3444432267777777777777776666677777777777777777776666667777777777


Q ss_pred             c--CCCCCccccccc----ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R--CSNPTIGFAKLI----FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~--~n~~~~~~~~~i----p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +  .|.+.. ....+    +.-..+.+.++.       +++..|..+..+++|+.|++++
T Consensus       123 ~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~  174 (390)
T 3o6n_A          123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSS  174 (390)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTSSCTTCCEEECCS
T ss_pred             ECCCCccCc-CCHHHhcCCCCCcEEECCCCc-------cCccChhhccCCCCCCEEECCC
Confidence            7  333321 11111    100222333333       3555666677777777777776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=125.70  Aligned_cols=126  Identities=16%  Similarity=0.035  Sum_probs=96.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-cccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      .++|+.|||++|.+++..|..+. ++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|..|.++++|+.
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            36789999999999988888888 8999999999999777777 778999999999999999999888999999999999


Q ss_pred             cc--CCCCCccc-----ccccccCCCcccccceeeeeEEEeecccc-cccccccceeeeccCC
Q 048290           81 ER--CSNPTIGF-----AKLIFVPAGTGYYYKYLVNLLLTWKGSEN-EYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~--~n~~~~~~-----~~~ip~~~~l~~~~~~~~~~~~~l~g~~p-~~~~~l~~L~~LdLS~  135 (253)
                      |+  .|.+....     .+.++.-..+.+.+|.       +++..+ ..++++++|+.|+|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-------l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-------IRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-------CCCCCCCGGGGTCSSCCEEEEES
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCc-------ccccccchhHhhCCCCCEEECCC
Confidence            99  44442211     0011111223344443       455544 5789999999999987

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=4.3e-12  Score=101.25  Aligned_cols=82  Identities=17%  Similarity=0.245  Sum_probs=74.7

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|+|++|+++ .+|..+. ++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            47899999999998 7888888 899999999999999988888899999999999999999988888999999999999


Q ss_pred             --CCCC
Q 048290           83 --CSNP   86 (253)
Q Consensus        83 --~n~~   86 (253)
                        .|.+
T Consensus       109 L~~N~l  114 (193)
T 2wfh_A          109 LHGNDI  114 (193)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence              4444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.30  E-value=6.9e-12  Score=107.77  Aligned_cols=123  Identities=11%  Similarity=0.032  Sum_probs=87.9

Q ss_pred             CCCcceEEECCCCcCcc--CCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccC
Q 048290            1 NCSQLRVLDLGKNAFFG--EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAM   78 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g--~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L   78 (253)
                      ++++|+.|++++|.++.  ..+..+. ++++|++|++++|.++. +|..+.  ++|+.|++++|.+++..|..+..+++|
T Consensus       143 ~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          143 GLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL  218 (330)
T ss_dssp             TCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             CCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence            36789999999999963  6777787 89999999999999984 666554  789999999999998888889999999


Q ss_pred             cccc-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           79 TYER-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        79 ~~L~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +.|+ + |.+.......+...   ..+.+.+|.       ++ .+|..+..++.|+.||+++
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~-~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-------LV-KVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-------CS-SCCTTTTTCSSCCEEECCS
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCc-------Cc-cCChhhccCCCcCEEECCC
Confidence            9988 3 43322111111111   223344443       23 6677777888888888876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=2.5e-12  Score=116.82  Aligned_cols=64  Identities=23%  Similarity=0.265  Sum_probs=56.5

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI   68 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i   68 (253)
                      +++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++.+|  ++.+++|++|||++|.+++..
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~   96 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL   96 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC
Confidence            35899999999999987778888 89999999999999998766  899999999999999988543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=4.4e-12  Score=109.74  Aligned_cols=73  Identities=15%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             EEECCCC-cCccCCChhHhhcCCCccEEEccC-CcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            7 VLDLGKN-AFFGEIPTWTGESLQNLIVLSLKS-NKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         7 ~L~Ls~N-~l~g~~p~~~~~~l~~L~~L~L~~-N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .++++++ +++ .+|. +. .+++|+.|+|++ |+|++..|..|+.|++|+.|+|++|+|++..|..|.++++|+.|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            5688888 898 5888 87 899999999996 999988888899999999999999999988888999999999998

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.29  E-value=1.5e-11  Score=105.84  Aligned_cols=78  Identities=21%  Similarity=0.138  Sum_probs=62.3

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|++++..|..+. ++++|++|+|++|+++ .+|..+.  ++|++|++++|.+++..+..|.++++|+.
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC  151 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred             CCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence            367889999999999877788887 7999999999999887 5666554  67888888888887666666777888877


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       152 L~  153 (332)
T 2ft3_A          152 IE  153 (332)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.29  E-value=2.5e-12  Score=117.04  Aligned_cols=75  Identities=19%  Similarity=0.075  Sum_probs=40.2

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +|++|||++|++++..|..+. ++++|++|+|++|++++..|..|+++++|++|||++|+++ .+|..  .+++|++|+
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             cccEEECCCCcccccChhhcc-ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            455555555555544444454 4555555555555555555555555555555555555555 34443  455555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.28  E-value=2.2e-12  Score=110.50  Aligned_cols=145  Identities=15%  Similarity=-0.032  Sum_probs=100.7

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhh-hccccCccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCF-NNFSAMTYE   81 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L   81 (253)
                      ++|+.|++++|++++..+.    .+++|+.|+|++|++++..|..++.+++|++|+|++|.+++..|..+ ..+++|+.|
T Consensus        99 ~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             CCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence            4566777777777653332    46789999999999998778888899999999999999998777766 478899998


Q ss_pred             c-CCCCCcccccc--cccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCccccCC
Q 048290           82 R-CSNPTIGFAKL--IFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNASVYAG  153 (253)
Q Consensus        82 ~-~n~~~~~~~~~--ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~~~~g  153 (253)
                      + +++......+.  ++.-..+.+.+|.       +++ +|..+..+++|+.|||++    .+|.. ..+..+....+.+
T Consensus       175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~-------l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          175 NLQYNFIYDVKGQVVFAKLKTLDLSSNK-------LAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             ECTTSCCCEEECCCCCTTCCEEECCSSC-------CCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred             ECCCCcCcccccccccccCCEEECCCCc-------CCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence            8 43332211111  1111334455554       344 444588899999999998    45543 3456667777889


Q ss_pred             cCCCCC
Q 048290          154 NLELCG  159 (253)
Q Consensus       154 N~~LCg  159 (253)
                      |+..|+
T Consensus       247 N~~~~~  252 (317)
T 3o53_A          247 NGFHCG  252 (317)
T ss_dssp             CCCBHH
T ss_pred             CCccCc
Confidence            988875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.28  E-value=1e-11  Score=105.22  Aligned_cols=137  Identities=18%  Similarity=0.073  Sum_probs=74.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|+|++|++++ ++. +. .+++|++|+|++|.+++ + +.+..+++|+.|+|++|++++.  ..+..+++|+.|
T Consensus        67 l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L  139 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL  139 (291)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence            4566666666666664 333 54 56666677776666664 2 2366666777777777766642  346666666666


Q ss_pred             c-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccC
Q 048290           82 R-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYA  152 (253)
Q Consensus        82 ~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~  152 (253)
                      + + |.+.. . ..+...   ..+.+.+|.       +++..+  +..++.|+.|+|++    .+|.-..+..+....+.
T Consensus       140 ~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~-------l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          140 YLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-------ISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (291)
T ss_dssp             ECCSSCCCC-C-GGGGGCTTCSEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             EccCCcCCc-c-hhhccCCCCCEEEccCCc-------cccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence            6 3 33221 1 111111   222333333       344443  67777778888776    33333344455555566


Q ss_pred             CcCC
Q 048290          153 GNLE  156 (253)
Q Consensus       153 gN~~  156 (253)
                      +|+.
T Consensus       209 ~n~i  212 (291)
T 1h6t_A          209 SQEC  212 (291)
T ss_dssp             EEEE
T ss_pred             CCcc
Confidence            6643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.27  E-value=2.4e-12  Score=101.00  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=81.9

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcCh--hhhccccCcc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPK--CFNNFSAMTY   80 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~   80 (253)
                      ++|++|||++|++++.  ..+. .+++|++|+|++|++++..|..+..+++|++|+|++|.++ .+|.  .+..+++|+.
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  117 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             CCCCEEECCCCCCCcc--cccc-cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence            4899999999999964  4677 8999999999999999765555699999999999999996 6776  8899999999


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccc----cccccceeeeccCC
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEY----KSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~----~~~l~~L~~LdLS~  135 (253)
                      |+ .++.                           ++ .+|..    +..++.|+.||++.
T Consensus       118 L~l~~N~---------------------------i~-~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A          118 LCILRNP---------------------------VT-NKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             EECCSSG---------------------------GG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred             EEecCCC---------------------------CC-CcHhHHHHHHHHCCccceeCCCc
Confidence            88 3332                           12 23443    77889999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.26  E-value=4.6e-12  Score=108.55  Aligned_cols=73  Identities=21%  Similarity=0.198  Sum_probs=60.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|||++|++++..|..+. .+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..     ..++|+.|
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            46899999999999987777887 89999999999999997655  899999999999999998433     22566666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       105 ~  105 (317)
T 3o53_A          105 H  105 (317)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.25  E-value=3.8e-11  Score=103.25  Aligned_cols=143  Identities=19%  Similarity=0.188  Sum_probs=77.0

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC--CCcChhhhcc----
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS--GKIPKCFNNF----   75 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~--g~ip~~l~~l----   75 (253)
                      +++|++|+|++|+++ .+|..+.   ++|++|++++|++++..+..+..+++|+.|++++|.++  +..|..+..+    
T Consensus       101 l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~  176 (332)
T 2ft3_A          101 LRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY  176 (332)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSC
T ss_pred             cCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCE
Confidence            566777777777776 5555432   56666666666666554555666666666666666664  2445555444    


Q ss_pred             ----------------ccCcccc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccC
Q 048290           76 ----------------SAMTYER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLS  134 (253)
Q Consensus        76 ----------------~~L~~L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS  134 (253)
                                      ++|+.|+  .|.+.......+...   ..+.+.+|.       +++..+..+..+++|+.|||+
T Consensus       177 L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          177 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-------IRMIENGSLSFLPTLRELHLD  249 (332)
T ss_dssp             CBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-------CCCCCTTGGGGCTTCCEEECC
T ss_pred             EECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-------CCcCChhHhhCCCCCCEEECC
Confidence                            2333333  111111000111111   233444444       466666677777778888877


Q ss_pred             C----CCCCC-CCCCCCCccccCCcC
Q 048290          135 R----KIPLG-TQLQSFNASVYAGNL  155 (253)
Q Consensus       135 ~----~iP~~-~~l~~~~~~~~~gN~  155 (253)
                      +    .+|.. ..+..+....+.+|.
T Consensus       250 ~N~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          250 NNKLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             SSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             CCcCeecChhhhcCccCCEEECCCCC
Confidence            6    45543 334445555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.25  E-value=7.8e-12  Score=115.11  Aligned_cols=115  Identities=17%  Similarity=0.079  Sum_probs=68.6

Q ss_pred             ceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc--
Q 048290            5 LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER--   82 (253)
Q Consensus         5 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~--   82 (253)
                      .+++|+++|+++ .+|..+.   ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+  
T Consensus        33 ~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            356677777766 3665432   5666777777776665566666667777777777776666666666666666666  


Q ss_pred             CCCCCcccccccccC-----CCcccccceeeeeEEEeec-ccccccccccceeeeccCC
Q 048290           83 CSNPTIGFAKLIFVP-----AGTGYYYKYLVNLLLTWKG-SENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 ~n~~~~~~~~~ip~~-----~~l~~~~~~~~~~~~~l~g-~~p~~~~~l~~L~~LdLS~  135 (253)
                      .|.+.     .+|..     ..+.+.+|.       +++ .+|..++++++|+.|||++
T Consensus       109 ~N~l~-----~lp~~~l~~L~~L~Ls~N~-------l~~l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          109 HNRLQ-----NISCCPMASLRHLDLSFND-------FDVLPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             TSCCC-----EECSCCCTTCSEEECCSSC-------CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred             CCcCC-----ccCccccccCCEEECCCCC-------ccccCchHhhcccCcccEEecCC
Confidence            33332     23322     222333333       344 3456777777777777776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.25  E-value=4.7e-12  Score=103.96  Aligned_cols=142  Identities=9%  Similarity=-0.008  Sum_probs=103.5

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCc-CcccCcccccCCCCCCEEeccC-CccCCCcChhhhccccCcc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNK-FHGNIPYQLCHLGFIQVLDLSL-NIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~-l~g~ip~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~   80 (253)
                      .+|+.|+|++|++++..+..+. ++++|++|++++|. +++..+..|.++++|++|++++ |++++..|..|.++++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            4789999999999976666787 89999999999997 8876677899999999999999 9999766788999999999


Q ss_pred             cc--CCCCCcccccccccC------C---Ccccccc-eeeeeEEEeeccccccccccccee-eeccCC----CCCCCC-C
Q 048290           81 ER--CSNPTIGFAKLIFVP------A---GTGYYYK-YLVNLLLTWKGSENEYKSTLGLVR-CLDLSR----KIPLGT-Q  142 (253)
Q Consensus        81 L~--~n~~~~~~~~~ip~~------~---~l~~~~~-~~~~~~~~l~g~~p~~~~~l~~L~-~LdLS~----~iP~~~-~  142 (253)
                      |+  .|.+..     +|..      .   .+.+.+| .       +++..+..+..++.|+ .|++++    .||... .
T Consensus       110 L~l~~n~l~~-----lp~~~~l~~L~~L~~L~l~~N~~-------l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          110 LGIFNTGLKM-----FPDLTKVYSTDIFFILEITDNPY-------MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             EEEEEECCCS-----CCCCTTCCBCCSEEEEEEESCTT-------CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             EeCCCCCCcc-----ccccccccccccccEEECCCCcc-------hhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            99  444422     3321      1   2233333 2       4566666788999999 999987    344431 1


Q ss_pred             CCCCCccccCCcCCC
Q 048290          143 LQSFNASVYAGNLEL  157 (253)
Q Consensus       143 l~~~~~~~~~gN~~L  157 (253)
                      ...+....+.+|+.+
T Consensus       178 ~~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          178 GTKLDAVYLNKNKYL  192 (239)
T ss_dssp             TCEEEEEECTTCTTC
T ss_pred             CCCCCEEEcCCCCCc
Confidence            123444446666433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.24  E-value=2.3e-11  Score=113.27  Aligned_cols=137  Identities=18%  Similarity=0.112  Sum_probs=88.0

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      |++|+.|+|++|++++ +|+ +. .+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ + ..+..+++|+.|
T Consensus        64 l~~L~~L~Ls~N~l~~-~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L  136 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTD-IKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL  136 (605)
T ss_dssp             CTTCCEEECTTSCCCC-CGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred             CCCCCEEEeeCCCCCC-Chh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence            6788888888888885 443 66 78888888888888875 33 68888888888888888875 3 357888888888


Q ss_pred             c-CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCC
Q 048290           82 R-CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAG  153 (253)
Q Consensus        82 ~-~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~g  153 (253)
                      + +++..... ..+...   ..+.+.+|.       +++..|  +..++.|+.|||++    .+|.-..+..+....+.+
T Consensus       137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-------l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQ-------ISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  206 (605)
T ss_dssp             ECCSSCCCCC-GGGGSCTTCSEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred             ECCCCccCCc-hhhcccCCCCEEECcCCc-------CCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence            8 33322211 111111   233344443       455555  67778888888876    233333444555555555


Q ss_pred             cC
Q 048290          154 NL  155 (253)
Q Consensus       154 N~  155 (253)
                      |+
T Consensus       207 N~  208 (605)
T 1m9s_A          207 QE  208 (605)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.24  E-value=9.1e-12  Score=94.74  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=64.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCC-cChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGK-IPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~   80 (253)
                      +++|++|++++|.+++.  ..+. .+++|++|+|++|.+++.+|..+..+++|+.|++++|.+++. .|..+..+++|+.
T Consensus        41 l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI--ANLP-KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             CTTCCEEECTTSCCCCC--TTCC-CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             cCCCcEEECcCCCCCCc--hhhh-cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            57888999999988864  5666 788899999999999887888888888899999999988863 4477888888888


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       118 L~  119 (149)
T 2je0_A          118 LD  119 (149)
T ss_dssp             EE
T ss_pred             Ee
Confidence            88

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=7.8e-12  Score=106.70  Aligned_cols=144  Identities=17%  Similarity=0.079  Sum_probs=104.9

Q ss_pred             CCcceEEECCCCcCccCCC----hhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCC--cC--hhhh
Q 048290            2 CSQLRVLDLGKNAFFGEIP----TWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGK--IP--KCFN   73 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p----~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~--ip--~~l~   73 (253)
                      +++|++|+|++|++++..|    ..+. .+++|++|+|++|.+++..|..++.+++|++|||++|++.+.  ++  ..++
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            6789999999999998766    3345 699999999999999988889999999999999999998763  32  3357


Q ss_pred             ccccCcccc--CCCCCccccc-------ccccCCCcccccceeeeeEEEeecccccccccc---cceeeeccCC----CC
Q 048290           74 NFSAMTYER--CSNPTIGFAK-------LIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTL---GLVRCLDLSR----KI  137 (253)
Q Consensus        74 ~l~~L~~L~--~n~~~~~~~~-------~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l---~~L~~LdLS~----~i  137 (253)
                      .+++|++|+  .|.+.. ...       .++.-..+.+++|.       +++.+|..+..+   ++|+.|||++    .+
T Consensus       195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~-------l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l  266 (310)
T 4glp_A          195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNS-------LRATVNPSAPRCMWSSALNSLNLSFAGLEQV  266 (310)
T ss_dssp             SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSC-------CCCCCCSCCSSCCCCTTCCCEECCSSCCCSC
T ss_pred             cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCC-------CCccchhhHHhccCcCcCCEEECCCCCCCch
Confidence            899999999  444421 111       11222455666665       577777777766   5899999987    56


Q ss_pred             CCCCCCCCCCccccCCcC
Q 048290          138 PLGTQLQSFNASVYAGNL  155 (253)
Q Consensus       138 P~~~~l~~~~~~~~~gN~  155 (253)
                      |..- +..+....+.+|.
T Consensus       267 p~~~-~~~L~~L~Ls~N~  283 (310)
T 4glp_A          267 PKGL-PAKLRVLDLSSNR  283 (310)
T ss_dssp             CSCC-CSCCSCEECCSCC
T ss_pred             hhhh-cCCCCEEECCCCc
Confidence            6542 2455555566663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1e-11  Score=107.46  Aligned_cols=83  Identities=14%  Similarity=0.024  Sum_probs=72.4

Q ss_pred             CCcceEEECCC-CcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGK-NAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|+.|+|++ |+|++..|..|. ++++|+.|+|++|+|++..|..|.+|++|+.|||++|+|++..|..|..++ |+.
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~  107 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE  107 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence            56799999996 999977777888 899999999999999999999999999999999999999976666676666 888


Q ss_pred             cc--CCCC
Q 048290           81 ER--CSNP   86 (253)
Q Consensus        81 L~--~n~~   86 (253)
                      |+  .|.+
T Consensus       108 l~l~~N~~  115 (347)
T 2ifg_A          108 LVLSGNPL  115 (347)
T ss_dssp             EECCSSCC
T ss_pred             EEeeCCCc
Confidence            88  4444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.23  E-value=3.8e-11  Score=102.54  Aligned_cols=74  Identities=20%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++ ++. +. .+++|++|+|++|.+++. | .+..+++|+.|+|++|.+++ +|. +..+++|+.|
T Consensus        62 l~~L~~L~L~~n~i~~-~~~-~~-~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           62 LNNLIGLELKDNQITD-LAP-LK-NLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL  134 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GT-TCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCC-Chh-Hc-cCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence            4566677777776663 343 55 566666666666666642 2 46666666666666666664 232 5566666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       135 ~  135 (308)
T 1h6u_A          135 Y  135 (308)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.22  E-value=4.7e-11  Score=101.97  Aligned_cols=74  Identities=26%  Similarity=0.384  Sum_probs=41.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++ +| .+. .+++|+.|+|++|++++ +|. +..+++|+.|++++|.+++..+  +..+++|+.|
T Consensus        84 l~~L~~L~L~~n~l~~-~~-~~~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L  156 (308)
T 1h6u_A           84 LTKITELELSGNPLKN-VS-AIA-GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL  156 (308)
T ss_dssp             CCSCCEEECCSCCCSC-CG-GGT-TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCC-ch-hhc-CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEE
Confidence            4556666666666653 33 344 56666666666666654 222 5566666666666666654332  5555666665


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       157 ~  157 (308)
T 1h6u_A          157 S  157 (308)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.21  E-value=2e-11  Score=115.99  Aligned_cols=115  Identities=15%  Similarity=0.062  Sum_probs=73.0

Q ss_pred             ceEEECCCCcCcc---------CCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhcc
Q 048290            5 LRVLDLGKNAFFG---------EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNF   75 (253)
Q Consensus         5 L~~L~Ls~N~l~g---------~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l   75 (253)
                      |+.++|+.|.+++         ..|..+. .++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+++
T Consensus       193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDIENRMVMPKDSKY-DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             hhcCccCcccccCccccccceecChhhhc-cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence            4455666655544         3466676 8999999999999998 78888889999999999999999 999999999


Q ss_pred             ccCcccc--CCCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           76 SAMTYER--CSNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        76 ~~L~~L~--~n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      ++|+.|+  .|.+.     .+|..       ..+.+.+|.        .+.+|..++.+++|+.|||++
T Consensus       270 ~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~--------l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-----SLPAELGSCFQLKYFYFFDNM--------VTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TTCCEEECTTSCCS-----SCCSSGGGGTTCSEEECCSSC--------CCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCCEEeCcCCcCC-----ccChhhcCCCCCCEEECCCCC--------CCccChhhhcCCCccEEeCCC
Confidence            9999999  44442     23332       122333333        235666677777777777765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.18  E-value=5.4e-11  Score=102.65  Aligned_cols=140  Identities=15%  Similarity=0.118  Sum_probs=93.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|++++|.+++. +. +. .+++|+.|++++|.+++..+  +..+++|+.|++++|.+++.  ..+..+++|+.|
T Consensus       198 l~~L~~L~l~~n~l~~~-~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L  270 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDI-TP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML  270 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             CCccceeecccCCCCCC-ch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence            57889999999999854 33 66 78999999999999986433  88899999999999988853  468888888888


Q ss_pred             c--CCCCCcc-cccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCCc
Q 048290           82 R--CSNPTIG-FAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAGN  154 (253)
Q Consensus        82 ~--~n~~~~~-~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~gN  154 (253)
                      +  .|.+... ....++.-..+.+.++.       +++..|..+..+++|+.|++++    .+|.-..+..+....+.+|
T Consensus       271 ~l~~n~l~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          271 NVGSNQISDISVLNNLSQLNSLFLNNNQ-------LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ  343 (347)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSC-------CCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred             EccCCccCCChhhcCCCCCCEEECcCCc-------CCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence            8  3333220 00111111333444444       5777788888888899998887    2222234445555555555


Q ss_pred             C
Q 048290          155 L  155 (253)
Q Consensus       155 ~  155 (253)
                      +
T Consensus       344 ~  344 (347)
T 4fmz_A          344 V  344 (347)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.16  E-value=8.7e-11  Score=98.10  Aligned_cols=138  Identities=14%  Similarity=0.041  Sum_probs=90.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|++++|+++ .+| .+. .+++|+.|+|++|++++..|  +..+++|+.|+|++|++++ +|.. .. ++|+.|
T Consensus        40 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L  111 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRL  111 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEE
T ss_pred             cCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEE
Confidence            467889999999988 566 576 78999999999999986544  8889999999999999885 4432 22 778888


Q ss_pred             c--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccC
Q 048290           82 R--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYA  152 (253)
Q Consensus        82 ~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~  152 (253)
                      +  .|.+.. .. .+...   ..+.+.+|.       +++. + .+..++.|+.|||++    .++.-..+..+....+.
T Consensus       112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~-------i~~~-~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          112 FLDNNELRD-TD-SLIHLKNLEILSIRNNK-------LKSI-V-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT  180 (263)
T ss_dssp             ECCSSCCSB-SG-GGTTCTTCCEEECTTSC-------CCBC-G-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEE
T ss_pred             EccCCccCC-Ch-hhcCcccccEEECCCCc-------CCCC-h-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCC
Confidence            7  343322 11 11111   233444444       3443 3 577888899999987    22222344555555667


Q ss_pred             CcCCCC
Q 048290          153 GNLELC  158 (253)
Q Consensus       153 gN~~LC  158 (253)
                      +|+.-|
T Consensus       181 ~N~~~~  186 (263)
T 1xeu_A          181 GQKCVN  186 (263)
T ss_dssp             EEEEEC
T ss_pred             CCcccC
Confidence            776444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.13  E-value=2.1e-10  Score=97.10  Aligned_cols=137  Identities=14%  Similarity=0.057  Sum_probs=97.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|++++|.++. +|. +. .+++|++|+|++|++++..+  +..+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus        45 l~~L~~L~l~~~~i~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             cCcccEEEccCCCccc-Chh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence            4679999999999984 554 76 79999999999999997544  9999999999999999985 44 49999999999


Q ss_pred             c--CCCCCcccc--cccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCCCCCCCCCccccCC
Q 048290           82 R--CSNPTIGFA--KLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLGTQLQSFNASVYAG  153 (253)
Q Consensus        82 ~--~n~~~~~~~--~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~~~l~~~~~~~~~g  153 (253)
                      +  .|.+.. ..  ..++.-..+.+.+|.       +++.  ..+..+++|+.|||++    .+|.-..+..+....+.+
T Consensus       118 ~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-------l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          118 SLEHNGISD-INGLVHLPQLESLYLGNNK-------ITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK  187 (291)
T ss_dssp             ECTTSCCCC-CGGGGGCTTCCEEECCSSC-------CCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ECCCCcCCC-ChhhcCCCCCCEEEccCCc-------CCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCC
Confidence            9  444422 10  111111333444444       3443  5678899999999997    333233455555555666


Q ss_pred             cC
Q 048290          154 NL  155 (253)
Q Consensus       154 N~  155 (253)
                      |.
T Consensus       188 N~  189 (291)
T 1h6t_A          188 NH  189 (291)
T ss_dssp             SC
T ss_pred             Cc
Confidence            63

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.12  E-value=1.3e-10  Score=107.46  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=23.8

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS   65 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~   65 (253)
                      ++|+.|+|++|+|++ +|. +. +  +|++|+|++|+|++ +|.   .+++|+.|+|++|.++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LP-A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CC-T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCEEEccCCCCCC-cch-hh-c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            344444444444443 443 32 1  44444444444443 333   3444444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.11  E-value=4.4e-12  Score=101.35  Aligned_cols=76  Identities=21%  Similarity=0.245  Sum_probs=61.6

Q ss_pred             CcceEEECCCCcCccCCCh------hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccc
Q 048290            3 SQLRVLDLGKNAFFGEIPT------WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFS   76 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~------~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~   76 (253)
                      ..++.++++.+.++|.+|.      .+. .+++|++|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            4567778888888887776      777 78888888888888886 66 7888888888888888888 6787777788


Q ss_pred             cCcccc
Q 048290           77 AMTYER   82 (253)
Q Consensus        77 ~L~~L~   82 (253)
                      +|+.|+
T Consensus        94 ~L~~L~   99 (198)
T 1ds9_A           94 TLEELW   99 (198)
T ss_dssp             HCSEEE
T ss_pred             cCCEEE
Confidence            888887

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.11  E-value=1.8e-10  Score=99.27  Aligned_cols=118  Identities=16%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|++++|++++ +|. +. .+++|++|++++|.+++.  +.+..+++|+.|++++|.+++.  ..+..+++|+.|
T Consensus       220 ~~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L  292 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITD-LSP-LA-NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL  292 (347)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCcCCEEEccCCccCC-Ccc-hh-cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence            5788899999998885 444 66 788999999999988763  4688888899999998888854  357888888888


Q ss_pred             c--CCCCCccccccc---ccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R--CSNPTIGFAKLI---FVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~--~n~~~~~~~~~i---p~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +  .|.+.......+   +.-..+.+.+|.       +++..|  +..++.|+.||+++
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~--~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-------ITDIRP--LASLSKMDSADFAN  342 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSS-------CCCCGG--GGGCTTCSEESSSC
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCc-------cccccC--hhhhhccceeehhh
Confidence            8  344422111111   111333445544       466666  78899999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.09  E-value=3.1e-10  Score=102.09  Aligned_cols=73  Identities=29%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|++++|.+++..|  +. .+++|+.|++++|.+++..|  +..+++|+.|+|++|++++..|  +..+++|+.|+
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            344444444444443222  33 44445555555554443222  4445555555555555543332  44555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.08  E-value=5e-10  Score=100.80  Aligned_cols=72  Identities=18%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++||+++|.+++ +| .+. .+++|++|+|++|++++. |  ++.+++|++|+|++|.+++. |  ++++++|+.|
T Consensus        41 l~~L~~L~Ls~n~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-MT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECCSSCCCC-CT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCCccc-Ch-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            4566667777776664 34 455 566666666666666653 3  56666666666666666643 3  5556666665


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       112 ~  112 (457)
T 3bz5_A          112 N  112 (457)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.07  E-value=4.4e-10  Score=101.12  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=69.6

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|++++|++++ +| .+. ++++|++|++++|++++ +|..+   .+|++|++++|++++ +| .++++++|+.|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            467777777777774 66 466 67778888888887775 55433   477777888887775 56 577888888877


Q ss_pred             --CCCCCcccccccccC-CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           83 --CSNPTIGFAKLIFVP-AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        83 --~n~~~~~~~~~ip~~-~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                        .|.+.. .. .++.. ..+.+.++.       ++ .+|. ++.++.|+.|++++
T Consensus       202 l~~N~l~~-l~-~~~~~L~~L~l~~n~-------l~-~lp~-~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          202 ADNNSLKK-LP-DLPLSLESIVAGNNI-------LE-ELPE-LQNLPFLTTIYADN  246 (454)
T ss_dssp             CCSSCCSS-CC-CCCTTCCEEECCSSC-------CS-SCCC-CTTCTTCCEEECCS
T ss_pred             CCCCcCCc-CC-CCcCcccEEECcCCc-------CC-cccc-cCCCCCCCEEECCC
Confidence              333321 11 11111 333344443       23 4553 66677777777766

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.06  E-value=4.3e-10  Score=104.64  Aligned_cols=118  Identities=17%  Similarity=0.053  Sum_probs=85.0

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      |++|+.|+|++|.+++ +| .+. .+++|+.|+|++|.+++.  +.+..+++|+.|+|++|.+++.  ..+..+++|+.|
T Consensus        86 l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  158 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  158 (605)
T ss_dssp             CTTCCEEECCSSCCCC-CT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence            6789999999999985 45 576 799999999999999863  4688899999999999999865  578889999998


Q ss_pred             c--CCCCCcccc-cccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R--CSNPTIGFA-KLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~--~n~~~~~~~-~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +  .|.+..... ..++.-..+.+.+|.       +++.  ..+..++.|+.|+|++
T Consensus       159 ~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-------i~~l--~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          159 SLEDNQISDIVPLAGLTKLQNLYLSKNH-------ISDL--RALAGLKNLDVLELFS  206 (605)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSC-------CCBC--GGGTTCTTCSEEECCS
T ss_pred             ECcCCcCCCchhhccCCCCCEEECcCCC-------CCCC--hHHccCCCCCEEEccC
Confidence            8  344422111 011111333444444       3443  3578899999999998

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.06  E-value=3.8e-10  Score=101.52  Aligned_cols=117  Identities=19%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|+.|++++|++++ +|. +. .+++|+.|+|++|++++..|  +..+++|+.|+|++|++++..|  +..+++|+.
T Consensus       263 ~l~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          263 GLTKLTELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             cCCCCCEEECCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            36889999999999996 444 66 79999999999999997544  8899999999999999998776  789999999


Q ss_pred             cc--CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER--CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~--~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      |+  .|.+.. . ..+...   ..+.+.+|.       +++..|  +..++.|+.|++++
T Consensus       336 L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~-------l~~~~~--~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          336 LFFYNNKVSD-V-SSLANLTNINWLSAGHNQ-------ISDLTP--LANLTRITQLGLND  384 (466)
T ss_dssp             EECCSSCCCC-C-GGGTTCTTCCEEECCSSC-------CCBCGG--GTTCTTCCEEECCC
T ss_pred             eECCCCccCC-c-hhhccCCCCCEEeCCCCc-------cCccch--hhcCCCCCEEeccC
Confidence            98  343322 1 011111   222333333       355555  56667777777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.05  E-value=3.8e-10  Score=94.22  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|+|++|++++ +|. +. .+++|+.|+|++|++++ +|.. .. ++|+.|+|++|++++ +| .+..+++|+.|
T Consensus        62 l~~L~~L~L~~N~i~~-~~~-l~-~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L  133 (263)
T 1xeu_A           62 FTNLKELHLSHNQISD-LSP-LK-DLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL  133 (263)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GT-TCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCC-Chh-hc-cCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEE
Confidence            6789999999999995 555 77 89999999999999986 4433 33 899999999999985 34 58899999999


Q ss_pred             c-C-CCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 R-C-SNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~-~-n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      + + |.+.. .. .+...   ..+.+.+|.       +++.  ..+..++.|+.||+++
T Consensus       134 ~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~-------i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          134 SIRNNKLKS-IV-MLGFLSKLEVLDLHGNE-------ITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             ECTTSCCCB-CG-GGGGCTTCCEEECTTSC-------CCBC--TTSTTCCCCCEEEEEE
T ss_pred             ECCCCcCCC-Ch-HHccCCCCCEEECCCCc-------Ccch--HHhccCCCCCEEeCCC
Confidence            8 4 44422 11 11111   333455554       3554  6678899999999987

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.05  E-value=6.1e-12  Score=100.51  Aligned_cols=102  Identities=18%  Similarity=0.116  Sum_probs=83.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++ +| .+. .+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence            6789999999999996 78 787 8999999999999998 688888888999999999999996 66 68999999998


Q ss_pred             cCCCCCcccccccccCCCcccccceeeeeEEEeecccc-cccccccceeeeccCC
Q 048290           82 RCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSEN-EYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p-~~~~~l~~L~~LdLS~  135 (253)
                      +                   +.+|.       +++..+ ..+..+++|+.|++++
T Consensus       121 ~-------------------l~~N~-------i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A          121 Y-------------------MSNNK-------ITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             E-------------------ESEEE-------CCCHHHHHHHTTTTTCSEEEECS
T ss_pred             E-------------------CCCCc-------CCchhHHHHHhcCCCCCEEEecC
Confidence            8                   22221       233222 4677889999999986

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.05  E-value=3.4e-11  Score=103.39  Aligned_cols=80  Identities=16%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             CCcceEEECCCCcCccC-CChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCC-ccCCC-cChhhhccccC
Q 048290            2 CSQLRVLDLGKNAFFGE-IPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN-IISGK-IPKCFNNFSAM   78 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~-~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N-~l~g~-ip~~l~~l~~L   78 (253)
                      +++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++..|..++.+++|+.|+|++| .+++. +|..+.++++|
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            45566666666666544 555555 5666666666666666666666666666666666666 45542 55556666666


Q ss_pred             cccc
Q 048290           79 TYER   82 (253)
Q Consensus        79 ~~L~   82 (253)
                      +.|+
T Consensus       171 ~~L~  174 (336)
T 2ast_B          171 DELN  174 (336)
T ss_dssp             CEEE
T ss_pred             CEEc
Confidence            6666

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.03  E-value=7.5e-10  Score=102.29  Aligned_cols=67  Identities=24%  Similarity=0.367  Sum_probs=42.7

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|+.|+|++|+|+ .+|   . .+++|++|+|++|+|++ +|. +..  +|+.|+|++|++++ +|.   .+++|+.|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~-~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---E-LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---C-CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-ccc---c-ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            34666666666666 455   2 45667777777777765 555 544  67777777777775 555   456666666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.02  E-value=4.6e-11  Score=107.49  Aligned_cols=63  Identities=13%  Similarity=0.015  Sum_probs=32.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCC-------------CEEeccCCccCC
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFI-------------QVLDLSLNIISG   66 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L-------------~~LdLs~N~l~g   66 (253)
                      .+.|+.|++++|++ |.+|..++ ++++|++|++++|.++|.+|..++.+++|             +.|++++|.+++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             cccchhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            36789999999999 79999998 89999999999999999999998887754             667777777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.01  E-value=1.4e-09  Score=97.94  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++ +|  ++ ++++|++|+|++|++++ +|  ++.+++|++|++++|++++ +|  ++++++|+.|
T Consensus        84 l~~L~~L~Ls~N~l~~-~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L  153 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTN-LD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTEL  153 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCce-ee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEE
Confidence            5677888888888875 44  55 67888888888888876 33  7777778888888887776 33  5566666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       154 ~  154 (457)
T 3bz5_A          154 D  154 (457)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.96  E-value=2.2e-10  Score=98.29  Aligned_cols=80  Identities=23%  Similarity=0.219  Sum_probs=61.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCC-cCccc-CcccccCCCCCCEEeccCC-ccCCC-cChhhhccc-
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSN-KFHGN-IPYQLCHLGFIQVLDLSLN-IISGK-IPKCFNNFS-   76 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~-ip~~~~~l~~L~~LdLs~N-~l~g~-ip~~l~~l~-   76 (253)
                      +++|++|+|++|.+++..|..+. .+++|++|+|++| .+++. +|..+..+++|+.|++++| .+++. +|..+..++ 
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            57788888888888877777777 6888888888888 67653 5666777888888888888 77754 567777777 


Q ss_pred             cCcccc
Q 048290           77 AMTYER   82 (253)
Q Consensus        77 ~L~~L~   82 (253)
                      +|+.|+
T Consensus       196 ~L~~L~  201 (336)
T 2ast_B          196 TITQLN  201 (336)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            888877

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.96  E-value=1.5e-10  Score=101.59  Aligned_cols=65  Identities=18%  Similarity=0.119  Sum_probs=40.2

Q ss_pred             CCcceEEECCCC---cCccCCChhH-------hhcCCCccEEEccCCcCcc----cCcccccCCCCCCEEeccCCccCCC
Q 048290            2 CSQLRVLDLGKN---AFFGEIPTWT-------GESLQNLIVLSLKSNKFHG----NIPYQLCHLGFIQVLDLSLNIISGK   67 (253)
Q Consensus         2 l~~L~~L~Ls~N---~l~g~~p~~~-------~~~l~~L~~L~L~~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~g~   67 (253)
                      +++|++|+|++|   ++++.+|..+       . .+++|++|+|++|.+++    .+|..+..+++|+.|+|++|.+++.
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT-TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHh-hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            456667777663   4444555544       3 56667777777777665    3555666666666777766666533

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.94  E-value=9.3e-10  Score=95.44  Aligned_cols=78  Identities=14%  Similarity=0.062  Sum_probs=58.7

Q ss_pred             CcceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcc-cccCCCCCCE-EeccCCccCCCcChhhhccccCc
Q 048290            3 SQLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPY-QLCHLGFIQV-LDLSLNIISGKIPKCFNNFSAMT   79 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~L~~-LdLs~N~l~g~ip~~l~~l~~L~   79 (253)
                      ++++.|+|++|+|+. +|. .|. ++++|++|+|++|++.+.+|. .|.++++++. ++++.|+++...|..|.++++|+
T Consensus        30 ~~l~~L~Ls~N~i~~-i~~~~f~-~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV-IQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSE-ECTTSST-TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCC-cCHHHHc-CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            468888899998884 554 566 788899999988888766654 4677777664 56667888766677788888888


Q ss_pred             ccc
Q 048290           80 YER   82 (253)
Q Consensus        80 ~L~   82 (253)
                      .|+
T Consensus       108 ~L~  110 (350)
T 4ay9_X          108 YLL  110 (350)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            777

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.91  E-value=2.5e-10  Score=100.14  Aligned_cols=125  Identities=14%  Similarity=0.097  Sum_probs=90.7

Q ss_pred             CcceEEECCCCcCc-cCCC---hhHhhcCCCccEEEccCCcCc--c---cCcccccCCCCCCEEeccCCccC----CCcC
Q 048290            3 SQLRVLDLGKNAFF-GEIP---TWTGESLQNLIVLSLKSNKFH--G---NIPYQLCHLGFIQVLDLSLNIIS----GKIP   69 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~-g~~p---~~~~~~l~~L~~L~L~~N~l~--g---~ip~~~~~l~~L~~LdLs~N~l~----g~ip   69 (253)
                      ++|++|+|++|+++ +.+|   ..+. .+++|+.|+|++|+++  |   .+|..+..+++|+.|+|++|.++    +.+|
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence            78999999999998 4455   4566 7999999999999998  3   34558889999999999999996    6788


Q ss_pred             hhhhccccCcccc--CCCCCcc----ccccc-----ccCCCcccccceeeeeEEEeec----cccccc-ccccceeeecc
Q 048290           70 KCFNNFSAMTYER--CSNPTIG----FAKLI-----FVPAGTGYYYKYLVNLLLTWKG----SENEYK-STLGLVRCLDL  133 (253)
Q Consensus        70 ~~l~~l~~L~~L~--~n~~~~~----~~~~i-----p~~~~l~~~~~~~~~~~~~l~g----~~p~~~-~~l~~L~~LdL  133 (253)
                      ..+..+++|+.|+  .|.+...    +...+     +.-..+.+.+|.       +++    .+|..+ .++++|+.|+|
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-------i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-------IELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-------CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-------CCHHHHHHHHHHHHhcCCCceEEEc
Confidence            8999999999999  4444221    01111     111333444444       355    366666 56788888888


Q ss_pred             CC
Q 048290          134 SR  135 (253)
Q Consensus       134 S~  135 (253)
                      ++
T Consensus       311 ~~  312 (386)
T 2ca6_A          311 NG  312 (386)
T ss_dssp             TT
T ss_pred             cC
Confidence            76

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.90  E-value=4.6e-10  Score=97.77  Aligned_cols=78  Identities=19%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             cceEEECCCCcCccCCC----hhHhhcCC-CccEEEccCCcCcccCcccccCC-----CCCCEEeccCCccCCCcChhhh
Q 048290            4 QLRVLDLGKNAFFGEIP----TWTGESLQ-NLIVLSLKSNKFHGNIPYQLCHL-----GFIQVLDLSLNIISGKIPKCFN   73 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p----~~~~~~l~-~L~~L~L~~N~l~g~ip~~~~~l-----~~L~~LdLs~N~l~g~ip~~l~   73 (253)
                      +|++|||++|.+++..+    ..+. .++ +|++|+|++|.+++..+..+..+     ++|+.|+|++|.+++..+..+.
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            35566666666554333    3443 455 56666666666655545444443     5555566655555554444333


Q ss_pred             cc-----ccCcccc
Q 048290           74 NF-----SAMTYER   82 (253)
Q Consensus        74 ~l-----~~L~~L~   82 (253)
                      ..     ++|+.|+
T Consensus       102 ~~l~~~~~~L~~L~  115 (362)
T 3goz_A          102 KTLAAIPFTITVLD  115 (362)
T ss_dssp             HHHHTSCTTCCEEE
T ss_pred             HHHHhCCCCccEEE
Confidence            32     4555555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.89  E-value=1.6e-09  Score=90.65  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             CCcceEEECCCCcCcc--CCChhHhhcCCCccEEEccCCcCcccCcccccCCC--CCCEEeccCCccCCCcCh-------
Q 048290            2 CSQLRVLDLGKNAFFG--EIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLG--FIQVLDLSLNIISGKIPK-------   70 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g--~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~g~ip~-------   70 (253)
                      +++|+.|+|++|+|++  .+|..+. .+++|+.|+|++|+|++.  .++..+.  +|+.|+|++|.+.+.+|+       
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            6789999999999998  5667777 899999999999999975  3455555  999999999999987773       


Q ss_pred             hhhccccCcccc
Q 048290           71 CFNNFSAMTYER   82 (253)
Q Consensus        71 ~l~~l~~L~~L~   82 (253)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            477889999888

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.89  E-value=8e-10  Score=96.25  Aligned_cols=74  Identities=15%  Similarity=0.068  Sum_probs=39.3

Q ss_pred             EECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc----ccccCCC-CCCEEeccCCccCCCcChhhhcc-----cc
Q 048290            8 LDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP----YQLCHLG-FIQVLDLSLNIISGKIPKCFNNF-----SA   77 (253)
Q Consensus         8 L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip----~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l-----~~   77 (253)
                      ++|+.|+++|.+|..+. ..++|++|+|++|.+++..+    ..+..++ +|+.|+|++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45555555555554443 33445555555555554444    4445555 55555555555555555555443     55


Q ss_pred             Ccccc
Q 048290           78 MTYER   82 (253)
Q Consensus        78 L~~L~   82 (253)
                      |+.|+
T Consensus        82 L~~L~   86 (362)
T 3goz_A           82 VTSLN   86 (362)
T ss_dssp             CCEEE
T ss_pred             ccEEE
Confidence            55555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.79  E-value=9.5e-09  Score=95.88  Aligned_cols=14  Identities=29%  Similarity=0.218  Sum_probs=7.8

Q ss_pred             CCCCEEeccCCccC
Q 048290           52 GFIQVLDLSLNIIS   65 (253)
Q Consensus        52 ~~L~~LdLs~N~l~   65 (253)
                      ++|+.|+|++|.++
T Consensus       181 ~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          181 SGLQELSVSDNQLA  194 (622)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             CCCcEEECCCCCCC
Confidence            45555555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.77  E-value=2.3e-08  Score=93.25  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=26.4

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCC
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISG   66 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g   66 (253)
                      ++|++|+|++|++++ +|.    .+++|+.|+|++|++++ +|..   +++|++|+|++|++++
T Consensus       101 ~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          101 PGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS  155 (622)
T ss_dssp             TTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred             CCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence            344444444444442 332    23445555555555553 3332   2555566666665553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.76  E-value=3.8e-09  Score=91.54  Aligned_cols=73  Identities=22%  Similarity=0.221  Sum_probs=60.0

Q ss_pred             eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcccc
Q 048290            6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTYER   82 (253)
Q Consensus         6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~   82 (253)
                      +.++-++|+++ .+|..+.   ++++.|+|++|+|+...+..|.++++|++|||++|++.+.+| ..|.+++++..+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            56788899999 7887653   589999999999996555679999999999999999987787 4678888876543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.76  E-value=5.6e-10  Score=99.74  Aligned_cols=68  Identities=18%  Similarity=0.014  Sum_probs=33.6

Q ss_pred             CCcceEEECCCCcCccCCC----hhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCCCcC
Q 048290            2 CSQLRVLDLGKNAFFGEIP----TWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISGKIP   69 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p----~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip   69 (253)
                      +++|+.|+|++|.+++.-.    +.+...+++|+.|+|++|.+++.    ++..+..+++|+.|||++|.+++..+
T Consensus       226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            3555666666665553211    11111345556666666555543    34445555555555555555544333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.66  E-value=5.3e-09  Score=93.35  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=37.4

Q ss_pred             CcceEEECCCCcCcc----CCChhHhhcCCCccEEEccCCcCcccCcccc-cCCC----CCCEEeccCCccCC----CcC
Q 048290            3 SQLRVLDLGKNAFFG----EIPTWTGESLQNLIVLSLKSNKFHGNIPYQL-CHLG----FIQVLDLSLNIISG----KIP   69 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g----~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~-~~l~----~L~~LdLs~N~l~g----~ip   69 (253)
                      ++|+.|+|++|++++    .+|..+. .+++|++|+|++|.++...+..+ ..+.    +|++|+|++|.++.    .+|
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            445555555555543    1333444 45555555555555544322222 1233    35555555555542    334


Q ss_pred             hhhhccccCcccc
Q 048290           70 KCFNNFSAMTYER   82 (253)
Q Consensus        70 ~~l~~l~~L~~L~   82 (253)
                      ..+..+++|+.|+
T Consensus       107 ~~l~~~~~L~~L~  119 (461)
T 1z7x_W          107 STLRTLPTLQELH  119 (461)
T ss_dssp             HHTTSCTTCCEEE
T ss_pred             HHHccCCceeEEE
Confidence            4555555555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.51  E-value=5.9e-08  Score=89.29  Aligned_cols=79  Identities=11%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             CCcceEEECCCCcCccCC----ChhHhhcCCCccEEEccCCcCc----ccCcccccCCCCCCEEeccCCccCCCcChhhh
Q 048290            2 CSQLRVLDLGKNAFFGEI----PTWTGESLQNLIVLSLKSNKFH----GNIPYQLCHLGFIQVLDLSLNIISGKIPKCFN   73 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~----p~~~~~~l~~L~~L~L~~N~l~----g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~   73 (253)
                      |++|++|+|++|.+++.-    +.... .+++|+.|+|++|.++    +.++..+.++++|+.|+|++|.+.+ +|..+.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQ-HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHH-HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHh-cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            678999999999988763    33344 7899999999999997    3445556788999999999999885 778889


Q ss_pred             ccccCcccc
Q 048290           74 NFSAMTYER   82 (253)
Q Consensus        74 ~l~~L~~L~   82 (253)
                      ++++|+.|+
T Consensus       241 ~~~~L~~L~  249 (592)
T 3ogk_B          241 AAANLEEFC  249 (592)
T ss_dssp             HCTTCCEEE
T ss_pred             hhhHHHhhc
Confidence            999999887

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=3.2e-07  Score=78.57  Aligned_cols=71  Identities=11%  Similarity=-0.122  Sum_probs=43.9

Q ss_pred             CCCCCEEeccCCccCCCcChhhhccccCcccc-CCCCCcccccccccC-----C----CcccccceeeeeEEEeeccccc
Q 048290           51 LGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-CSNPTIGFAKLIFVP-----A----GTGYYYKYLVNLLLTWKGSENE  120 (253)
Q Consensus        51 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~n~~~~~~~~~ip~~-----~----~l~~~~~~~~~~~~~l~g~~p~  120 (253)
                      +++|+.|+|++|+++..-+.+|.++++|+.++ .+++..     |+..     .    .+.+.++        ++...+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~-----I~~~aF~~~~~L~~~l~l~~~--------l~~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT-----IGQRVFSNCGRLAGTLELPAS--------VTAIEFG  291 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE-----ECTTTTTTCTTCCEEEEECTT--------CCEECTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce-----ehHHHhhCChhccEEEEEccc--------ceEEchh
Confidence            67888899998888844446788888888887 444321     2222     1    1111111        2444556


Q ss_pred             ccccccceeeeccC
Q 048290          121 YKSTLGLVRCLDLS  134 (253)
Q Consensus       121 ~~~~l~~L~~LdLS  134 (253)
                      .|.++++|+.++++
T Consensus       292 aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          292 AFMGCDNLRYVLAT  305 (329)
T ss_dssp             TTTTCTTEEEEEEC
T ss_pred             hhhCCccCCEEEeC
Confidence            77777777777774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=5.5e-08  Score=81.25  Aligned_cols=55  Identities=15%  Similarity=0.261  Sum_probs=46.4

Q ss_pred             cCCCccEEEccCCcCcc--cCcccccCCCCCCEEeccCCccCCCcChhhhccc--cCcccc
Q 048290           26 SLQNLIVLSLKSNKFHG--NIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFS--AMTYER   82 (253)
Q Consensus        26 ~l~~L~~L~L~~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~L~   82 (253)
                      ++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELW  226 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEE
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEE
Confidence            68999999999999998  5567788999999999999999965  3455555  778777

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=4.9e-07  Score=77.43  Aligned_cols=101  Identities=16%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCC-EEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQ-VLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      |++|+.|+|++|+++ .+|...+.++.+|+.|+|.+| ++..-+..|.++++|+ .+++++ .++..-+.+|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            678999999999988 455543338999999999988 7766667789999999 999988 676455678999999988


Q ss_pred             cc-CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeec
Q 048290           81 ER-CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLD  132 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~Ld  132 (253)
                      ++ .++-                           ++...+..|.++++|+.+.
T Consensus       302 l~l~~n~---------------------------i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDK---------------------------ITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSC---------------------------CCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCc---------------------------cCccchhhhcCCcchhhhc
Confidence            87 2221                           2444556777787787765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.32  E-value=7.4e-08  Score=84.38  Aligned_cols=17  Identities=6%  Similarity=-0.033  Sum_probs=10.1

Q ss_pred             ccccccccceeeeccCC
Q 048290          119 NEYKSTLGLVRCLDLSR  135 (253)
Q Consensus       119 p~~~~~l~~L~~LdLS~  135 (253)
                      ...+...+.|+.|||++
T Consensus       204 ~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          204 AAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHGGGCSCCCEEECCS
T ss_pred             HHHHhcCCCcCeEECCC
Confidence            34445555677777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.31  E-value=5.9e-08  Score=84.98  Aligned_cols=126  Identities=13%  Similarity=-0.068  Sum_probs=77.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccc-----cCCCCCCEEeccCCccCCC----cChhhh
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQL-----CHLGFIQVLDLSLNIISGK----IPKCFN   73 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~-----~~l~~L~~LdLs~N~l~g~----ip~~l~   73 (253)
                      ++|+.|||++|.++..-...+...+++|+.|+|++|.++..-...+     ...++|+.|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            5788999999988754333343356788899999998875443443     3467888889988888642    344556


Q ss_pred             ccccCcccc-C-CCCCccc----ccccccC---CCcccccceeeeeEEEeec----ccccccccccceeeeccCC
Q 048290           74 NFSAMTYER-C-SNPTIGF----AKLIFVP---AGTGYYYKYLVNLLLTWKG----SENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        74 ~l~~L~~L~-~-n~~~~~~----~~~ip~~---~~l~~~~~~~~~~~~~l~g----~~p~~~~~l~~L~~LdLS~  135 (253)
                      ..++|+.|+ + |.+....    ...+...   ..+.+.+|.       ++.    .+...+...+.|+.|||++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-------i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-------AGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-------CCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-------CCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            778888888 3 4332210    1111111   233344433       232    2344455668899999985

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.11  E-value=6.3e-07  Score=70.59  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=57.8

Q ss_pred             CCcceEEECCCC-cCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCCC----c
Q 048290            2 CSQLRVLDLGKN-AFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISGK----I   68 (253)
Q Consensus         2 l~~L~~L~Ls~N-~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~----i   68 (253)
                      .+.|+.|+|++| .++..    +...+. ..++|++|+|++|.+...    +...+...+.|+.|+|++|.+...    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            567899999998 88643    334444 568899999999998642    334455667899999999998744    3


Q ss_pred             ChhhhccccCcccc
Q 048290           69 PKCFNNFSAMTYER   82 (253)
Q Consensus        69 p~~l~~l~~L~~L~   82 (253)
                      ...+...+.|+.|+
T Consensus       114 ~~~L~~n~~L~~L~  127 (185)
T 1io0_A          114 VEALQSNTSLIELR  127 (185)
T ss_dssp             HHGGGGCSSCCEEE
T ss_pred             HHHHHhCCCceEEE
Confidence            45566667777776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.09  E-value=4.4e-07  Score=83.44  Aligned_cols=127  Identities=10%  Similarity=-0.016  Sum_probs=72.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEcc----CCcCccc-----CcccccCCCCCCEEeccCC--ccCCCcCh
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLK----SNKFHGN-----IPYQLCHLGFIQVLDLSLN--IISGKIPK   70 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~----~N~l~g~-----ip~~~~~l~~L~~LdLs~N--~l~g~ip~   70 (253)
                      |++|++|+++.|++++..+..+...+++|+.|+|+    .|.+++.     ++..+.++++|+.|+|+++  .+++..+.
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            56788888877888776666666347788888885    6677653     3334566777777777643  35555555


Q ss_pred             hhhc-cccCcccc--CCCCCcccc----cccccCCCcccccceeeeeEEEeecc-cccccccccceeeeccCC
Q 048290           71 CFNN-FSAMTYER--CSNPTIGFA----KLIFVPAGTGYYYKYLVNLLLTWKGS-ENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        71 ~l~~-l~~L~~L~--~n~~~~~~~----~~ip~~~~l~~~~~~~~~~~~~l~g~-~p~~~~~l~~L~~LdLS~  135 (253)
                      .+.. +++|+.|+  .+.+.....    ...+.-..+.+.++.       +++. ++.....+++|+.|+|++
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-------FSERAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-------CBHHHHHHHHHHCSSCCEEEEES
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-------CcHHHHHHHHHhcCccCeeECcC
Confidence            5543 66777776  333321000    001100122233322       2333 344556788899999887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.93  E-value=2.4e-06  Score=78.48  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=40.0

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCC-cCccc-CcccccCCCCCCEEeccCCccCCCcChhhh----ccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSN-KFHGN-IPYQLCHLGFIQVLDLSLNIISGKIPKCFN----NFS   76 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~----~l~   76 (253)
                      ++|+.|+|++|.+++..+..+...+++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+.    .++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            455566666665555444444323556666666655 33321 233333555666666666655544433333    333


Q ss_pred             cCcccc
Q 048290           77 AMTYER   82 (253)
Q Consensus        77 ~L~~L~   82 (253)
                      +|+.|+
T Consensus       185 ~L~~L~  190 (594)
T 2p1m_B          185 SLVSLN  190 (594)
T ss_dssp             CCCEEE
T ss_pred             cCcEEE
Confidence            555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.86  E-value=2e-06  Score=78.96  Aligned_cols=35  Identities=11%  Similarity=0.051  Sum_probs=17.9

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLK   36 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~   36 (253)
                      |++|+.|+++.|++++..+..+...+++|+.|+|+
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            44555555555555544444443235555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.79  E-value=9e-06  Score=63.88  Aligned_cols=80  Identities=9%  Similarity=0.049  Sum_probs=62.2

Q ss_pred             CCcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEec--cCCccCCCc---
Q 048290            2 CSQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDL--SLNIISGKI---   68 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdL--s~N~l~g~i---   68 (253)
                      .++|++|||++|.++..    +...+. ..++|++|+|++|.++..    +...+...+.|+.|+|  ++|.+...-   
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            46899999999999753    344455 568999999999999853    4566778889999999  889997543   


Q ss_pred             -ChhhhccccCcccc
Q 048290           69 -PKCFNNFSAMTYER   82 (253)
Q Consensus        69 -p~~l~~l~~L~~L~   82 (253)
                       ...+...++|+.|+
T Consensus       143 l~~~L~~n~~L~~L~  157 (185)
T 1io0_A          143 IANMLEKNTTLLKFG  157 (185)
T ss_dssp             HHHHHHHCSSCCEEE
T ss_pred             HHHHHHhCCCcCEEe
Confidence             34455567888887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.75  E-value=6e-05  Score=66.47  Aligned_cols=75  Identities=11%  Similarity=-0.036  Sum_probs=40.6

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +|+.+++.+ .++..-+..|. +|.+|+.++|++|.++..-...|. ..+|+.+.|.++ ++..-..+|.++++|+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~-~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFY-YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTT-TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC-CccEehHHHhh-CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence            456666654 44422233444 566677777766666643333343 466666666533 4423335566666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.49  E-value=0.00013  Score=54.00  Aligned_cols=57  Identities=21%  Similarity=0.214  Sum_probs=45.8

Q ss_pred             eEEECCCCcCc-cCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC
Q 048290            6 RVLDLGKNAFF-GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS   65 (253)
Q Consensus         6 ~~L~Ls~N~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~   65 (253)
                      ..+|-+++.++ ..+|..+.   ++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36888999987 35775543   47899999999999766677889999999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.10  E-value=0.00056  Score=60.21  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=57.6

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccC-----CCcChhhhcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIIS-----GKIPKCFNNF   75 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l   75 (253)
                      +|++|+.+++..| ++ .++...+.+ .+|+.+.| .|.++..-+..|.++++|+.+++.+|.+.     ..-+.+|.++
T Consensus       224 ~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c  299 (401)
T 4fdw_A          224 KTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC  299 (401)
T ss_dssp             TCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred             CCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence            4778999999875 55 344443324 78999999 45566555778999999999999888775     2334688888


Q ss_pred             ccCcccc
Q 048290           76 SAMTYER   82 (253)
Q Consensus        76 ~~L~~L~   82 (253)
                      ++|+.+.
T Consensus       300 ~~L~~l~  306 (401)
T 4fdw_A          300 PKLARFE  306 (401)
T ss_dssp             TTCCEEC
T ss_pred             ccCCeEE
Confidence            8988887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.10  E-value=0.00012  Score=57.06  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=55.6

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCc-CcccCcccccCC----CCCCEEeccCCc-cCCCcChhhhcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNK-FHGNIPYQLCHL----GFIQVLDLSLNI-ISGKIPKCFNNFSA   77 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~-l~g~ip~~~~~l----~~L~~LdLs~N~-l~g~ip~~l~~l~~   77 (253)
                      .|+.||++++.++..--..+. ++++|+.|+|+++. ++..--..++.+    ++|+.|+|+++. ++..--..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            588999999988754334455 78999999999875 664333445554    479999999874 66443346777888


Q ss_pred             Ccccc
Q 048290           78 MTYER   82 (253)
Q Consensus        78 L~~L~   82 (253)
                      |+.|+
T Consensus       141 L~~L~  145 (176)
T 3e4g_A          141 LKYLF  145 (176)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            88887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.00  E-value=0.0001  Score=64.18  Aligned_cols=81  Identities=11%  Similarity=0.145  Sum_probs=57.0

Q ss_pred             CCcceEEECCC--CcCccC-----CChhHh-hcCCCccEEEccCCcCcccCcccc---cCCCCCCEEeccCCccCCC---
Q 048290            2 CSQLRVLDLGK--NAFFGE-----IPTWTG-ESLQNLIVLSLKSNKFHGNIPYQL---CHLGFIQVLDLSLNIISGK---   67 (253)
Q Consensus         2 l~~L~~L~Ls~--N~l~g~-----~p~~~~-~~l~~L~~L~L~~N~l~g~ip~~~---~~l~~L~~LdLs~N~l~g~---   67 (253)
                      +++|+.|+|+.  |...|.     +...+. ..+++|++|+|++|.+....+..+   ..+++|+.|||+.|.+.+.   
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~  297 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR  297 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence            68999999853  332221     111121 147899999999999986544444   3588999999999999864   


Q ss_pred             -cChhhhccccCcccc
Q 048290           68 -IPKCFNNFSAMTYER   82 (253)
Q Consensus        68 -ip~~l~~l~~L~~L~   82 (253)
                       ++..+.++++|+.|+
T Consensus       298 ~L~~~L~~l~~L~~L~  313 (362)
T 2ra8_A          298 LLLDHVDKIKHLKFIN  313 (362)
T ss_dssp             HHHTTHHHHTTCSEEE
T ss_pred             HHHhhcccCCcceEEE
Confidence             444556788999988

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.98  E-value=0.00027  Score=61.44  Aligned_cols=56  Identities=18%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCccccc--CCCCCCEEeccC
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC--HLGFIQVLDLSL   61 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~--~l~~L~~LdLs~   61 (253)
                      +++|+.|+|++|.-. .++. +  .+++|+.|+|..+.++......++  .+++|+.|+|+.
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             CCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            567888888877311 2443 3  377888888887776644333443  677888888753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.58  E-value=0.0061  Score=52.61  Aligned_cols=56  Identities=9%  Similarity=0.032  Sum_probs=24.2

Q ss_pred             cCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290           26 SLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus        26 ~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++.+|+.+.+..+ +...-...|.++++|+.+++.++.++..-+.+|.++.+|+.+.
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence            3444444444322 2222223344555555555554444422234455555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0023  Score=47.11  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=31.8

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFH   41 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~   41 (253)
                      .+|+.|||++|+|+ .+|......+++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            37999999999999 566554448999999999999875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.48  E-value=0.0073  Score=52.56  Aligned_cols=103  Identities=9%  Similarity=0.015  Sum_probs=53.3

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      |+.|+.+.+.++..+ .-...+. ++..|+.+.+. +.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+
T Consensus       264 c~~L~~i~lp~~~~~-I~~~aF~-~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          264 CAYLASVKMPDSVVS-IGTGAFM-NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             CSSCCEEECCTTCCE-ECTTTTT-TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccEEecccccce-ecCcccc-cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            445555555544332 1122333 56666666664 3343333445666666666666543 332223456666666655


Q ss_pred             cCCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 RCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      .           +|..                ++..-...|.++++|+.+++++
T Consensus       340 ~-----------ip~s----------------v~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          340 A-----------IPSS----------------VTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             E-----------ECTT----------------CCBCCGGGGTTCTTCCEEEESS
T ss_pred             E-----------ECcc----------------cCEEhHhHhhCCCCCCEEEECC
Confidence            4           1211                1333445677888888888754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.46  E-value=0.0011  Score=51.44  Aligned_cols=81  Identities=11%  Similarity=0.004  Sum_probs=56.1

Q ss_pred             CCCccEEEccCCcCcccCcccccCCCCCCEEeccCCc-cCCCcChhhhcc----ccCcccc-CC--CCCcccccccccCC
Q 048290           27 LQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNI-ISGKIPKCFNNF----SAMTYER-CS--NPTIGFAKLIFVPA   98 (253)
Q Consensus        27 l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l----~~L~~L~-~n--~~~~~~~~~ip~~~   98 (253)
                      -..|+.|||+++.++..--..+..+++|+.|+|+++. ++..--..+..+    ++|+.|+ +.  ++            
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I------------  127 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV------------  127 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC------------
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC------------
Confidence            3579999999999876545567899999999999985 654333345543    3688887 21  22            


Q ss_pred             CcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           99 GTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        99 ~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                                      +..--..+..+++|+.|+|++
T Consensus       128 ----------------TD~Gl~~L~~~~~L~~L~L~~  148 (176)
T 3e4g_A          128 ----------------TDKGIIALHHFRNLKYLFLSD  148 (176)
T ss_dssp             ----------------CHHHHHHGGGCTTCCEEEEES
T ss_pred             ----------------CHHHHHHHhcCCCCCEEECCC
Confidence                            222223466788999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.99  E-value=0.011  Score=51.52  Aligned_cols=75  Identities=12%  Similarity=0.037  Sum_probs=47.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +..++.+.+..+.+.   ...+. .+.+|+.+.+..+ ++..-..+|.++++|+.++|.++ ++..-..+|.++++|+.+
T Consensus       275 ~~~l~~~~~~~~~i~---~~~F~-~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i  348 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVP---EKTFY-GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI  348 (394)
T ss_dssp             CTTCCEEEECSSEEC---TTTTT-TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccceeccCceeec---ccccc-ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence            455566665554432   22344 6788888887654 55344556788888888888654 552334678888888877


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      .
T Consensus       349 ~  349 (394)
T 4fs7_A          349 N  349 (394)
T ss_dssp             C
T ss_pred             E
Confidence            6

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.94  E-value=0.046  Score=47.41  Aligned_cols=120  Identities=7%  Similarity=-0.078  Sum_probs=73.3

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +|..|+.+.+..+..+ .-...+. .+..++.+....+.+.   ...|..+.+|+.+.+.++ ++..-..+|.++++|+.
T Consensus       251 ~~~~l~~~~~~~~~~~-i~~~~F~-~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          251 GCTDLESISIQNNKLR-IGGSLFY-NCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TCSSCCEEEECCTTCE-ECSCTTT-TCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEcCCCcce-eeccccc-cccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            3677888888877654 3344555 7889998888776532   346788999999999765 55333467889999988


Q ss_pred             cc-CCCCCcccccccccC---CCcccccceeeeeEEEeecccccccccccceeeeccC
Q 048290           81 ER-CSNPTIGFAKLIFVP---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLS  134 (253)
Q Consensus        81 L~-~n~~~~~~~~~ip~~---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS  134 (253)
                      ++ .++...-..+++..-   ..+.+..+        ++......|.++.+|+.+++.
T Consensus       325 i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--------l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          325 IDLPYLVEEIGKRSFRGCTSLSNINFPLS--------LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ECCCTTCCEECTTTTTTCTTCCEECCCTT--------CCEECTTTBTTCTTCCEEEEE
T ss_pred             EEeCCcccEEhHHhccCCCCCCEEEECcc--------ccEehHHHhhCCCCCCEEEEC
Confidence            87 443321001111100   11112222        244445577888888888874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.67  E-value=0.066  Score=45.96  Aligned_cols=77  Identities=14%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             CCcceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      |.+|+.+++..+ +. .++. .+. ++.+|+.+.+.++.++..-...|.++.+|+.++|..+ ++-.-..+|.++++|+.
T Consensus       262 ~~~l~~i~l~~~-i~-~i~~~aF~-~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          262 CTALKTLNFYAK-VK-TVPYLLCS-GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             CTTCCEEEECCC-CS-EECTTTTT-TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             eehhcccccccc-ce-eccccccc-cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            455666666543 33 3443 444 8999999999999888666778999999999999765 55233468999999998


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      +.
T Consensus       338 i~  339 (379)
T 4h09_A          338 IS  339 (379)
T ss_dssp             CC
T ss_pred             EE
Confidence            76

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.64  E-value=0.016  Score=45.72  Aligned_cols=63  Identities=11%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             CcceEEECCCC-cCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccCC
Q 048290            3 SQLRVLDLGKN-AFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIISG   66 (253)
Q Consensus         3 ~~L~~L~Ls~N-~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g   66 (253)
                      +.|+.|+|++| +|...    +-..+. .-+.|+.|+|++|++...    +-..+..-+.|+.|+|+.|.|..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            46788888875 66432    233344 456788888888888632    22334455678888888888863

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.54  E-value=0.07  Score=46.25  Aligned_cols=78  Identities=12%  Similarity=0.206  Sum_probs=58.8

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +|++|+.+++. +.++ .++...+.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++-.-..+|.++++|+.
T Consensus       286 ~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          286 NCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN  361 (394)
T ss_dssp             TCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred             cccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence            46789999996 4555 455444338999999999865 55444677999999999999765 65333578999999998


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      ++
T Consensus       362 i~  363 (394)
T 4gt6_A          362 IE  363 (394)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.29  E-value=0.046  Score=43.08  Aligned_cols=59  Identities=14%  Similarity=0.091  Sum_probs=44.5

Q ss_pred             CcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCC
Q 048290            3 SQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLN   62 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N   62 (253)
                      +.|+.|+|++|++...    +...+. .-+.|+.|+|++|.|...    +-..+..-+.|+.|+|++|
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            5799999999999743    334444 457899999999999843    2334555677999999875

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=86.33  E-value=0.26  Score=28.64  Aligned_cols=19  Identities=11%  Similarity=0.067  Sum_probs=7.5

Q ss_pred             hHHHHHHHHHHHHhccCch
Q 048290          203 GFFVGFWGVCGTLMLNRSW  221 (253)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~  221 (253)
                      |+++.++++++.++|+|+.
T Consensus        20 Gv~~~~ii~~~~~~~~RRr   38 (44)
T 2ks1_B           20 ALLLLLVVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            3333333333334444443

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=80.77  E-value=0.43  Score=26.79  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=13.3

Q ss_pred             eeeeeehhhHHHHHHHHHHHHhc
Q 048290          195 GFYLSSILGFFVGFWGVCGTLML  217 (253)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~  217 (253)
                      ..+.++++|.++++.++++..+|
T Consensus        11 GaIAGiVvG~v~gv~li~~l~~~   33 (38)
T 2k1k_A           11 GEIVAVIFGLLLGAALLLGILVF   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeeeehHHHHHHHHHHHHHHH
Confidence            44566667766666655554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           N   L  L L  N      P     SL  L  L   +NK        L +L  I  L   
Sbjct: 305 NLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 61  LNIISGKIP 69
            N IS   P
Sbjct: 360 HNQISDLTP 368

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLC 49
               L  L++  N   GEIP     +LQ   V +  +NK     P   C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 28  QNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFN 73
           +NL  L L++N+ +G +P  L  L F+  L++S N + G+IP+  N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 9/167 (5%)

Query: 1   NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLS 60
           +   L  +    N   G IP   G   +    +++  N+  G IP    +          
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDL 204

Query: 61  LNIISGKIPKCFNNFSAMTYERCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENE 120
              +              T +           L  V          L N  +   G+  +
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY--GTLPQ 262

Query: 121 YKSTLGLVRCLDLSR-----KIPLGTQLQSFNASVYAGNLELCGLPL 162
             + L  +  L++S      +IP G  LQ F+ S YA N  LCG PL
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 5  LRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHG----NIPYQLCHLGFIQVLDLS 60
          ++ LD+                LQ   V+ L           +I   L     +  L+L 
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 61 LNIISGKIPKCF 72
           N +      C 
Sbjct: 64 SNELGDVGVHCV 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.31
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.08
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.05
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.01
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.79
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.62
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.19
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.11
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=4.6e-20  Score=156.09  Aligned_cols=163  Identities=27%  Similarity=0.360  Sum_probs=103.1

Q ss_pred             CCcceEEECCC-CcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGK-NAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      |++|++|||++ |+++|.+|.+++ ++++|++|+|++|++.+..|..+..+..|+.+++++|.+.+.+|..+.+++.++.
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             Cccccccccccccccccccccccc-cccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            56666777764 666666776666 6777777777776666666655666666666666666666666666666666666


Q ss_pred             cc--CCCCCccc---------------------cc-----------------------ccccC----CCc---cccccee
Q 048290           81 ER--CSNPTIGF---------------------AK-----------------------LIFVP----AGT---GYYYKYL  107 (253)
Q Consensus        81 L~--~n~~~~~~---------------------~~-----------------------~ip~~----~~l---~~~~~~~  107 (253)
                      ++  .|.+....                     .+                       .+|..    ..+   .+.++.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55  22221100                     00                       01100    000   0000000


Q ss_pred             e----------------eeEEEeecccccccccccceeeeccCC-----CCCCCCCCCCCCccccCCcCCCCCccCCCCC
Q 048290          108 V----------------NLLLTWKGSENEYKSTLGLVRCLDLSR-----KIPLGTQLQSFNASVYAGNLELCGLPLANKC  166 (253)
Q Consensus       108 ~----------------~~~~~l~g~~p~~~~~l~~L~~LdLS~-----~iP~~~~l~~~~~~~~~gN~~LCg~~~~~~C  166 (253)
                      .                -....++|.+|+.++.+++|+.||||+     .||....++.++...+.||+.+||.|++ .|
T Consensus       234 ~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            0                000125889999999999999999998     7998888999999999999999999886 77

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=9.2e-16  Score=120.67  Aligned_cols=106  Identities=23%  Similarity=0.177  Sum_probs=76.3

Q ss_pred             CcceEEECCCCcCccCCCh-hHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            3 SQLRVLDLGKNAFFGEIPT-WTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++++|+|++|+|++.++. .+. ++++|+.|+|++|.+.+..+..+..+++|+.|+|++|++++..|..|.++++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~-~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccC-CCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            3577788888888765543 444 67888888888888877777777778888888888888876666777778888877


Q ss_pred             cCCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           82 RCSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        82 ~~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      +                   +.+|.       +++..+..|..+++|++++|++
T Consensus       108 ~-------------------L~~N~-------l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         108 N-------------------LYDNQ-------ISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             E-------------------CCSSC-------CCEECTTSSTTCTTCCEEECTT
T ss_pred             c-------------------cCCcc-------ccccCHHHhcCCcccccccccc
Confidence            7                   22221       3666677777788888888876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.7e-14  Score=116.79  Aligned_cols=148  Identities=18%  Similarity=0.213  Sum_probs=114.6

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|+|++|+|+ .+|. +. .+++|++|+|++|++++ ++..+..+++|+.|++++|.+.+..+..+..+.+++.
T Consensus        53 ~l~~L~~L~L~~N~l~-~l~~-~~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~  128 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELT-KLQV-DG-TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (266)
T ss_dssp             TCTTCCEEECTTSCCC-EEEC-CS-CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             cccccccccccccccc-cccc-cc-ccccccccccccccccc-cccccccccccccccccccccceeecccccccccccc
Confidence            4688999999999998 5664 45 79999999999999985 5778999999999999999999888888899999999


Q ss_pred             cc-C-CCCCcccccccccC----CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC-CCCCCCCcc
Q 048290           81 ER-C-SNPTIGFAKLIFVP----AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG-TQLQSFNAS  149 (253)
Q Consensus        81 L~-~-n~~~~~~~~~ip~~----~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~-~~l~~~~~~  149 (253)
                      ++ . |.+.. ........    ..+.+.+|.       +++..+..+..+++|+.|||++    .||.+ ..+..+...
T Consensus       129 L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         129 LYLKGNELKT-LPPGLLTPTPKLEKLSLANNN-------LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             EECTTSCCCC-CCTTTTTTCTTCCEEECTTSC-------CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             ccccccccce-eccccccccccchhccccccc-------ccccCccccccccccceeecccCCCcccChhHCCCCCCCEE
Confidence            88 3 33322 11111111    223345554       5888888899999999999998    67765 345667777


Q ss_pred             ccCCcCCCCCc
Q 048290          150 VYAGNLELCGL  160 (253)
Q Consensus       150 ~~~gN~~LCg~  160 (253)
                      .+.|||+.|.+
T Consensus       201 ~L~~Np~~CdC  211 (266)
T d1p9ag_         201 FLHGNPWLCNC  211 (266)
T ss_dssp             ECCSCCBCCSG
T ss_pred             EecCCCCCCCc
Confidence            89999999975

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=2.1e-14  Score=120.80  Aligned_cols=120  Identities=18%  Similarity=0.258  Sum_probs=93.2

Q ss_pred             cceEEECCCCcCcc--CCChhHhhcCCCccEEEccC-CcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            4 QLRVLDLGKNAFFG--EIPTWTGESLQNLIVLSLKS-NKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g--~~p~~~~~~l~~L~~L~L~~-N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++.|||++|+++|  .+|..++ ++++|++|+|++ |+++|.+|.+|++|++|++|||++|++.+..|..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            58899999999998  4899999 899999999996 8999999999999999999999999999999999999999999


Q ss_pred             cc-C-CCCCcccccccccC-------CCcccccceeeeeEEEeecccccccccccce-eeeccCC
Q 048290           81 ER-C-SNPTIGFAKLIFVP-------AGTGYYYKYLVNLLLTWKGSENEYKSTLGLV-RCLDLSR  135 (253)
Q Consensus        81 L~-~-n~~~~~~~~~ip~~-------~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L-~~LdLS~  135 (253)
                      ++ . |...    +.+|..       ..+.+.++.       ++|.+|..+..+..+ +.+++++
T Consensus       130 l~l~~N~~~----~~~p~~l~~l~~L~~l~l~~n~-------l~~~ip~~~~~l~~l~~~l~~~~  183 (313)
T d1ogqa_         130 LDFSYNALS----GTLPPSISSLPNLVGITFDGNR-------ISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             EECCSSEEE----SCCCGGGGGCTTCCEEECCSSC-------CEEECCGGGGCCCTTCCEEECCS
T ss_pred             ccccccccc----ccCchhhccCcccceeeccccc-------ccccccccccccccccccccccc
Confidence            88 3 3331    122222       112233333       466777777666554 5666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=7.1e-14  Score=109.63  Aligned_cols=126  Identities=21%  Similarity=0.178  Sum_probs=103.2

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccC-cccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNI-PYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +.+.+|.++|+++ .+|..+.   +++++|+|++|+|++.+ +..|.++++|+.|+|++|.+.+..+..|..+++|+.|+
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            3467999999999 7897663   58999999999998755 55689999999999999999999999999999999998


Q ss_pred             -CCCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcC
Q 048290           83 -CSNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNL  155 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~  155 (253)
                       +++.                           +++..|..|.+++.|+.|+|++    .||.+  ..+..+....+.+|+
T Consensus        85 Ls~N~---------------------------l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          85 LGENK---------------------------IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCSCC---------------------------CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ecccc---------------------------ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence             3332                           3666788899999999999998    44543  345556666788999


Q ss_pred             CCCCc
Q 048290          156 ELCGL  160 (253)
Q Consensus       156 ~LCg~  160 (253)
                      ..|.+
T Consensus       138 ~~~~~  142 (192)
T d1w8aa_         138 FNCNC  142 (192)
T ss_dssp             BCCSG
T ss_pred             ccccc
Confidence            98864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.3e-14  Score=115.56  Aligned_cols=134  Identities=16%  Similarity=0.037  Sum_probs=68.4

Q ss_pred             ChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc--CCCCCcccccccccC
Q 048290           20 PTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER--CSNPTIGFAKLIFVP   97 (253)
Q Consensus        20 p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~--~n~~~~~~~~~ip~~   97 (253)
                      |..+. ++++|++|++++|.+.+..+..+..+.+|+.+++++|++++..+..|..+++|+.|+  .|++.......+...
T Consensus        98 ~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_          98 PATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             TTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             chhhc-ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc
Confidence            33343 455555555555555444444444445555555555555443344444445555444  222211000001000


Q ss_pred             ---CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCccccCCcCCCCCcc
Q 048290           98 ---AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVYAGNLELCGLP  161 (253)
Q Consensus        98 ---~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~~gN~~LCg~~  161 (253)
                         ..+.+.++.       +++..|..|..+++|+.||+++    .+|..  ..+..+....+.+||.-|.++
T Consensus       177 ~~L~~l~l~~N~-------l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         177 HSLDRLLLHQNR-------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccchhhhhhcc-------ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence               111122222       4677788899999999999988    33321  344556666788999988654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=3.8e-13  Score=98.17  Aligned_cols=97  Identities=22%  Similarity=0.255  Sum_probs=77.6

Q ss_pred             eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc-CC
Q 048290            6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER-CS   84 (253)
Q Consensus         6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-~n   84 (253)
                      ++|||++|+++ .+|. +. .+++|++|++++|+++ .+|+.++.+++|+.|++++|.++ .+| .+..+++|+.++ .+
T Consensus         1 R~L~Ls~n~l~-~l~~-l~-~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCcc-cc-cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            57999999999 5664 77 8999999999999998 57888999999999999999998 455 489999999998 33


Q ss_pred             CCCcccccccccCCCcccccceeeeeEEEeecc-cccccccccceeeeccCC
Q 048290           85 NPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGS-ENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        85 ~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~-~p~~~~~l~~L~~LdLS~  135 (253)
                      +.                           ++.. ....+..++.|+.+|+++
T Consensus        75 N~---------------------------i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          75 NR---------------------------LQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             SC---------------------------CCSSSTTGGGGGCTTCCEEECTT
T ss_pred             Cc---------------------------cCCCCCchhhcCCCCCCEEECCC
Confidence            33                           1221 124567788888888865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=99.21  Aligned_cols=78  Identities=17%  Similarity=0.076  Sum_probs=67.4

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++.+++.|||++|+|+ .+|..+. .+++|+.|+|++|+++. + +.+..+++|+.|++++|+++...+..+..+++|+.
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~-~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGA-TLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGG-GTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCC-ccCcccc-ccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3568999999999999 5776665 79999999999999984 4 35899999999999999999655666788999999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus        92 L~   93 (162)
T d1a9na_          92 LI   93 (162)
T ss_dssp             EE
T ss_pred             ce
Confidence            98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.2e-12  Score=104.94  Aligned_cols=142  Identities=16%  Similarity=0.123  Sum_probs=95.5

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +++++|||++|+|++..+..|. ++++|++|+|++|+|+. +| .++.+++|+.|+|++|+++ .+|..+.++++|+.|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~-~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhh-ccccccccccccccccc-cc-ccccccccccccccccccc-cccccccccccccccc
Confidence            4688999999999865456676 89999999999999984 44 4678999999999999998 4566788899999888


Q ss_pred             -CCCCCcccccccccC----CCcccccceeeeeEEEeecccccccccccceeeeccCC----CCCCC--CCCCCCCcccc
Q 048290           83 -CSNPTIGFAKLIFVP----AGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR----KIPLG--TQLQSFNASVY  151 (253)
Q Consensus        83 -~n~~~~~~~~~ip~~----~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~----~iP~~--~~l~~~~~~~~  151 (253)
                       .++............    ..+.+.++.       ++...+..+..++.++.+++++    .+|.+  ..+..+....+
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-------l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNE-------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccceeeccccccccccccccccccc-------cceeccccccccccchhcccccccccccCccccccccccceeec
Confidence             333211110000000    222333333       4666677788889999999987    34432  23444555556


Q ss_pred             CCcC
Q 048290          152 AGNL  155 (253)
Q Consensus       152 ~gN~  155 (253)
                      .+|.
T Consensus       180 s~N~  183 (266)
T d1p9ag_         180 QENS  183 (266)
T ss_dssp             CSSC
T ss_pred             ccCC
Confidence            6663

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=106.92  Aligned_cols=127  Identities=17%  Similarity=0.087  Sum_probs=94.3

Q ss_pred             CCCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            1 NCSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         1 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      ++++|++|++++|.+....+..+. .+.+|+.+++++|++++..+..|..+++|+.|++++|++++..|..|.++++|+.
T Consensus       103 ~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCEEecCCcccccccccccc-hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccch
Confidence            367889999999998865555665 6888999999999998766777888889999999999998777788888888888


Q ss_pred             cc--CCCCCcccccccc---cCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           81 ER--CSNPTIGFAKLIF---VPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        81 L~--~n~~~~~~~~~ip---~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                      ++  .|++.......+.   .-..+.+.+|.       +++..+..++.+..|+.|+|++
T Consensus       182 l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-------i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-------LSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSC-------CSCCCHHHHTTCTTCCEEECCS
T ss_pred             hhhhhccccccChhHhhhhhhcccccccccc-------cccccccccccccccCEEEecC
Confidence            88  4444321111111   11233444444       5788888999999999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=3.4e-12  Score=92.97  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=68.0

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCc-ChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKI-PKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~   80 (253)
                      +++|++||+++|+++ .+|+.+. .+++|++|++++|.+++ +| .++.+++|+.|++++|+++... +..+..+++|+.
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~-~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             CCCCCEEECCCCccC-cchhhhh-hhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence            678999999999998 6888888 89999999999999985 44 5999999999999999998443 257889999999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      ++
T Consensus        95 L~   96 (124)
T d1dcea3          95 LN   96 (124)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.5e-11  Score=88.51  Aligned_cols=79  Identities=13%  Similarity=0.060  Sum_probs=67.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCC-cCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSN-KFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +...+.++.+++++. ..|..+. .+++|+.|++++| .++..-+..|.++++|+.|+|++|+++...|..|..+++|+.
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~-~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCccccc-CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            445677899999988 6787787 7999999999766 588766778999999999999999999777888999999999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus        85 L~   86 (156)
T d2ifga3          85 LN   86 (156)
T ss_dssp             EE
T ss_pred             ee
Confidence            98

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.1e-11  Score=92.77  Aligned_cols=77  Identities=17%  Similarity=0.104  Sum_probs=65.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC--hhhhccccCc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP--KCFNNFSAMT   79 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip--~~l~~l~~L~   79 (253)
                      +++|+.|||++|+++ .++ .+. .+++|++|++++|+++...+..+..+++|+.|++++|+++. ++  ..+..+++|+
T Consensus        40 l~~L~~L~Ls~N~i~-~l~-~~~-~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~  115 (162)
T d1a9na_          40 LDQFDAIDFSDNEIR-KLD-GFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLT  115 (162)
T ss_dssp             TTCCSEEECCSSCCC-EEC-CCC-CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCC
T ss_pred             cccCCEEECCCCCCC-ccC-Ccc-cCcchhhhhcccccccCCCccccccccccccceeccccccc-cccccccccccccc
Confidence            678999999999999 565 366 79999999999999997656567789999999999999984 44  4688889999


Q ss_pred             ccc
Q 048290           80 YER   82 (253)
Q Consensus        80 ~L~   82 (253)
                      .++
T Consensus       116 ~L~  118 (162)
T d1a9na_         116 YLC  118 (162)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            888

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.05  E-value=2.4e-10  Score=94.93  Aligned_cols=77  Identities=22%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.+++++|.++ .+|..+   +++|+.|++++|..++..+..+.+++.++.|++++|.+++..|..+.++++|++|
T Consensus       149 l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             ccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceee
Confidence            456777777777776 455432   4677777777777777777777777777777777777776666777777777777


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       225 ~  225 (305)
T d1xkua_         225 H  225 (305)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=5.6e-10  Score=92.67  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=36.9

Q ss_pred             ceEEECCCCcCc--cCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            5 LRVLDLGKNAFF--GEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         5 L~~L~Ls~N~l~--g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      +..++...|...  +..+..+. .+++|+++++++|.++ .+|..+  +++|+.|++++|..++..+..|.+++.++.|+
T Consensus       126 ~~~l~~~~n~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  201 (305)
T d1xkua_         126 MIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG  201 (305)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred             ccccccccccccccCCCccccc-cccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccc
Confidence            344455444322  22233444 4555556666555554 233332  34555556665555555555555555555555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=6e-10  Score=87.13  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=54.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +.+++.|++++|.++ .++ .+. .+++|++|+|++|++++..|  ++++++|+.|++++|.+. .+| .+.+++.|+.+
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~-~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCC-Ccc-ccc-cCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccc
Confidence            356788888888887 454 365 68888888888888875432  778888888888888776 343 37777777777


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       112 ~  112 (199)
T d2omxa2         112 T  112 (199)
T ss_dssp             E
T ss_pred             c
Confidence            7

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.9e-10  Score=85.74  Aligned_cols=79  Identities=14%  Similarity=0.021  Sum_probs=64.8

Q ss_pred             CCcceEEECCCC-cCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcc
Q 048290            2 CSQLRVLDLGKN-AFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N-~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++|+.|++++| .++..-+..|. ++++|+.|+|++|+|+...|..|..+++|+.|||++|+++...+..|.. .+|+.
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~  107 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQE  107 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCE
T ss_pred             ccccCeeecCCCccccccCchhhc-cccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccc
Confidence            578999999876 58854455676 8999999999999999887888999999999999999999444444544 46888


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       108 L~  109 (156)
T d2ifga3         108 LV  109 (156)
T ss_dssp             EE
T ss_pred             cc
Confidence            87

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=8.6e-10  Score=87.00  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=58.8

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +.+|+.|++++|.++. ++ .+. .+++|++|+|++|++++. + .++.+++|++|++++|++++ +| .+.++++|+.+
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~-~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQ-YLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGG-GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCC-ch-hHh-hCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            3568889999999884 44 366 789999999999999863 3 36788999999999999884 55 47888888888


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       118 ~  118 (210)
T d1h6ta2         118 S  118 (210)
T ss_dssp             E
T ss_pred             c
Confidence            7

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=1.7e-09  Score=84.53  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=58.0

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      |++|++|+|++|++++ +++ +. ++++|+.|++++|.+.. ++ .+.+++.|+.|++++|.+....  .+..+++|+.+
T Consensus        61 l~nL~~L~Ls~N~l~~-~~~-l~-~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L  133 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRL  133 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             CCCcCcCccccccccC-ccc-cc-CCccccccccccccccc-cc-cccccccccccccccccccccc--ccchhhhhHHh
Confidence            6788899999999885 443 66 78899999999888864 33 4788889999999888887433  47778888888


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       134 ~  134 (199)
T d2omxa2         134 E  134 (199)
T ss_dssp             E
T ss_pred             h
Confidence            7

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.6e-09  Score=85.43  Aligned_cols=74  Identities=26%  Similarity=0.236  Sum_probs=62.4

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|++|+|++|++++ +++ +. .+++|++|++++|++++ +| .+..+++|+.|++++|.+. .+ ..+..++.++.+
T Consensus        67 l~~L~~L~L~~n~i~~-l~~-~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l  139 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESL  139 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEE
T ss_pred             CCCCCEEeCCCccccC-ccc-cc-cCccccccccccccccc-cc-ccccccccccccccccccc-cc-cccccccccccc
Confidence            6899999999999995 553 56 79999999999999985 44 5889999999999999986 33 358888888888


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       140 ~  140 (210)
T d1h6ta2         140 Y  140 (210)
T ss_dssp             E
T ss_pred             c
Confidence            7

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.89  E-value=6.4e-11  Score=92.99  Aligned_cols=74  Identities=20%  Similarity=0.194  Sum_probs=33.8

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      ++|++|+|++|+|+ .++ .+. .+++|++|+|++|.++ .+|..+..+++|+.|++++|+++. ++ .+..+++|+.|+
T Consensus        48 ~~L~~L~Ls~n~I~-~i~-~l~-~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCCEEECSEEEES-CCC-CHH-HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEE
T ss_pred             cccceeECcccCCC-Ccc-ccc-CCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccccccccccc
Confidence            44555555555554 233 243 4555555555555554 233333333445555555555542 22 244444454444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=4.6e-09  Score=89.08  Aligned_cols=74  Identities=24%  Similarity=0.299  Sum_probs=52.2

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|++++|++++ +++ +. .++.++.+++..|.+++.  ..+..+++++.|++++|++++..|  +..+++|+.|
T Consensus       262 ~~~L~~L~l~~~~l~~-~~~-~~-~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L  334 (384)
T d2omza2         262 LTKLTELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  334 (384)
T ss_dssp             CTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             cccCCEeeccCcccCC-CCc-cc-cccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEE
Confidence            5778889999998885 333 44 577777777777777652  346677777777777777775432  6677777777


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       335 ~  335 (384)
T d2omza2         335 F  335 (384)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=3.1e-09  Score=90.19  Aligned_cols=74  Identities=28%  Similarity=0.278  Sum_probs=45.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +.+++.|++++|++++ +++ +. .+++|+.|+|++|++++ +| .+.++++|++||+++|++++..|  +.++++|+.|
T Consensus       306 ~~~l~~L~ls~n~l~~-l~~-l~-~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L  378 (384)
T d2omza2         306 LKNLTYLTLYFNNISD-ISP-VS-SLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQL  378 (384)
T ss_dssp             CTTCSEEECCSSCCSC-CGG-GG-GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             hcccCeEECCCCCCCC-Ccc-cc-cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEe
Confidence            3556666666666664 332 44 56667777777666653 33 46666667777776666665443  6666666666


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       379 ~  379 (384)
T d2omza2         379 G  379 (384)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.73  E-value=1.6e-10  Score=90.62  Aligned_cols=77  Identities=21%  Similarity=0.197  Sum_probs=65.0

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTY   80 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~   80 (253)
                      |++|+.|+|++|.++ .+|.... .+++|+.|++++|+++. + +.+..+++|+.|+|++|+++.... ..+..+++|+.
T Consensus        69 l~~L~~L~Ls~N~i~-~i~~~~~-~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_          69 MENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HTTCCEEECCEEEEC-SCSSHHH-HHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             CccccChhhcccccc-ccccccc-ccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccce
Confidence            578999999999998 6787665 57789999999999985 3 458889999999999999984322 46889999999


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      |+
T Consensus       145 L~  146 (198)
T d1m9la_         145 LL  146 (198)
T ss_dssp             EE
T ss_pred             ee
Confidence            88

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=8.5e-09  Score=81.85  Aligned_cols=74  Identities=23%  Similarity=0.257  Sum_probs=42.5

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCccc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYE   81 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L   81 (253)
                      +++|+.|++++|.+++ ++ .+. ++++|+.|+|++|++++ +| .++++++|++|+|++|+++. +| .+.++++|+.|
T Consensus       150 ~~~L~~L~l~~n~~~~-~~-~l~-~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L  222 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSD-LT-PLA-NLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIV  222 (227)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGT-TCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEE
T ss_pred             cccccccccccccccc-ch-hhc-ccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEE
Confidence            3456666666666653 22 244 56666666666666654 32 25666666666666666663 32 25566666655


Q ss_pred             c
Q 048290           82 R   82 (253)
Q Consensus        82 ~   82 (253)
                      +
T Consensus       223 ~  223 (227)
T d1h6ua2         223 T  223 (227)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=3.7e-08  Score=78.04  Aligned_cols=53  Identities=23%  Similarity=0.226  Sum_probs=31.5

Q ss_pred             cCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290           26 SLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus        26 ~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .+++|+.|++++|.+++.  ..++++++|+.|||++|++++ +| .+.++++|+.|+
T Consensus       149 ~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~  201 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVH  201 (227)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE
T ss_pred             cccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEE
Confidence            456666666666666532  225666666666666666653 33 256666666666

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.9e-08  Score=79.15  Aligned_cols=79  Identities=13%  Similarity=0.071  Sum_probs=61.1

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCc-ccccCCCCCCEEeccC-CccCCCcChhhhccccCcc
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIP-YQLCHLGFIQVLDLSL-NIISGKIPKCFNNFSAMTY   80 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~   80 (253)
                      +++++|||++|+++...+..|. ++++|++|+|++|.+...+| ..|..++.++.+++.. |++....+..|.++++|+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~-~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTT-TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccChhHhh-ccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            3688899999999843334566 78999999999998876554 4578888888888764 6777667778888888888


Q ss_pred             cc
Q 048290           81 ER   82 (253)
Q Consensus        81 L~   82 (253)
                      ++
T Consensus       108 l~  109 (242)
T d1xwdc1         108 LL  109 (242)
T ss_dssp             EE
T ss_pred             cc
Confidence            87

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-08  Score=76.87  Aligned_cols=80  Identities=18%  Similarity=0.169  Sum_probs=59.9

Q ss_pred             CCcceEEECCCCcCccC--CChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcCh-------hh
Q 048290            2 CSQLRVLDLGKNAFFGE--IPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPK-------CF   72 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~--~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~-------~l   72 (253)
                      +++|++|||++|+++..  ++..+. .+++|+.|+|++|.++..-+-.+.....|+.|++++|.+......       .+
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~-~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHH-HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             CCCCCEeeCCCccccCCchhHHHHh-hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            67899999999999853  234455 789999999999999854333444556789999999999866543       25


Q ss_pred             hccccCcccc
Q 048290           73 NNFSAMTYER   82 (253)
Q Consensus        73 ~~l~~L~~L~   82 (253)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            6678888887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.7e-08  Score=78.53  Aligned_cols=73  Identities=22%  Similarity=0.221  Sum_probs=61.1

Q ss_pred             eEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcC-hhhhccccCcccc
Q 048290            6 RVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIP-KCFNNFSAMTYER   82 (253)
Q Consensus         6 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~   82 (253)
                      +.++.+++.++ .+|..+.   +++++|+|++|+++...+..|.++++|++|++++|.+...+| ..|.+++.++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            57888888998 7887653   489999999999986656679999999999999999987665 4678888888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.45  E-value=4.8e-07  Score=75.09  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             cceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCC-----------------CCCCEEeccCCccCC
Q 048290            4 QLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHL-----------------GFIQVLDLSLNIISG   66 (253)
Q Consensus         4 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l-----------------~~L~~LdLs~N~l~g   66 (253)
                      +++.|||++|.++ .+|+.    +++|++|+|++|+|+ .+|..+++|                 +.|++||+++|.+. 
T Consensus        39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-  111 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-  111 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-
T ss_pred             CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccchhhhhccccccccccccccc-
Confidence            4667777777776 46642    346777777777776 555543321                 23556666666665 


Q ss_pred             CcChhhhccccCcccc
Q 048290           67 KIPKCFNNFSAMTYER   82 (253)
Q Consensus        67 ~ip~~l~~l~~L~~L~   82 (253)
                      .+|. ++.+++|+.++
T Consensus       112 ~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_         112 KLPE-LQNSSFLKIID  126 (353)
T ss_dssp             SCCC-CTTCTTCCEEE
T ss_pred             cccc-hhhhccceeec
Confidence            4443 45566666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.19  E-value=8.3e-07  Score=73.56  Aligned_cols=61  Identities=20%  Similarity=0.288  Sum_probs=39.8

Q ss_pred             CcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCCccCCCcChhhh
Q 048290            3 SQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLNIISGKIPKCFN   73 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~   73 (253)
                      ++|++|+|++|+++ .+|.    .+++|+.|+|++|+|+ .+|..   +++|+.|+|++|+++ .+|....
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~  344 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE  344 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT
T ss_pred             CCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc
Confidence            56777777777776 5663    3456777777777776 45542   456777777777776 5665433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3e-07  Score=75.35  Aligned_cols=81  Identities=16%  Similarity=0.037  Sum_probs=64.6

Q ss_pred             CCcceEEECCCCcCccCCChhHhhcCCCccEEEccCCcCcccCcccccCCCCCCEEeccCC-ccCCC-cChhhhccccCc
Q 048290            2 CSQLRVLDLGKNAFFGEIPTWTGESLQNLIVLSLKSNKFHGNIPYQLCHLGFIQVLDLSLN-IISGK-IPKCFNNFSAMT   79 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~ip~~~~~l~~L~~LdLs~N-~l~g~-ip~~l~~l~~L~   79 (253)
                      ..+|++|||+++.++......+...+++|++|+|+++.+++..+..++.+++|+.|+++++ .++.. +.....++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3579999999999876543344448999999999999999888889999999999999994 56522 333456788999


Q ss_pred             ccc
Q 048290           80 YER   82 (253)
Q Consensus        80 ~L~   82 (253)
                      .|+
T Consensus       125 ~L~  127 (284)
T d2astb2         125 ELN  127 (284)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            998

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3e-07  Score=78.86  Aligned_cols=108  Identities=17%  Similarity=0.036  Sum_probs=71.3

Q ss_pred             CcceEEECCCCcCccCC-ChhHhhcCCCccEEEccCCcCcc----cCcccccCCCCCCEEeccCCccCCCc----Chhhh
Q 048290            3 SQLRVLDLGKNAFFGEI-PTWTGESLQNLIVLSLKSNKFHG----NIPYQLCHLGFIQVLDLSLNIISGKI----PKCFN   73 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~-p~~~~~~l~~L~~L~L~~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~g~i----p~~l~   73 (253)
                      .+|+.||+++|++++.- ...+. .++++++|+|++|.++-    .+...+..+++|+.|||++|.++..-    ...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~-~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH-HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHH-hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            36899999999998642 33344 78999999999999873    34556788999999999999885221    11221


Q ss_pred             -ccccCcccc-C-CCCCcccccccccCCCcccccceeeeeEEEeecccccccccccceeeeccCC
Q 048290           74 -NFSAMTYER-C-SNPTIGFAKLIFVPAGTGYYYKYLVNLLLTWKGSENEYKSTLGLVRCLDLSR  135 (253)
Q Consensus        74 -~l~~L~~L~-~-n~~~~~~~~~ip~~~~l~~~~~~~~~~~~~l~g~~p~~~~~l~~L~~LdLS~  135 (253)
                       ...+|+.|+ . +.+...                        -...++..+..++.|+.|+|++
T Consensus        81 ~~~~~L~~L~L~~n~it~~------------------------~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGA------------------------GCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             STTCCCCEEECTTSCCBGG------------------------GHHHHHHHTTSCTTCCEEECCS
T ss_pred             cCCCCCCEEECCCCCcccc------------------------ccccccchhhcccccccccccc
Confidence             124677777 3 332110                        0112345566677788888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.3e-07  Score=69.77  Aligned_cols=57  Identities=14%  Similarity=0.067  Sum_probs=42.2

Q ss_pred             cCCCccEEEccCCcCccc--CcccccCCCCCCEEeccCCccCCCcChhhhccccCcccc
Q 048290           26 SLQNLIVLSLKSNKFHGN--IPYQLCHLGFIQVLDLSLNIISGKIPKCFNNFSAMTYER   82 (253)
Q Consensus        26 ~l~~L~~L~L~~N~l~g~--ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~   82 (253)
                      .+++|++|+|++|+++..  ++..+..+++|+.|||++|.++..-+-.+.....|+.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~  121 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW  121 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceee
Confidence            588999999999999854  245577889999999999999843332333445677776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.7e-05  Score=63.28  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCcceEEECCCC--cCccC-CChhHhhcCCCccEEEccCC-cCcccCcccccCCCCCCEEeccC-CccCCCcChhhhccc
Q 048290            2 CSQLRVLDLGKN--AFFGE-IPTWTGESLQNLIVLSLKSN-KFHGNIPYQLCHLGFIQVLDLSL-NIISGKIPKCFNNFS   76 (253)
Q Consensus         2 l~~L~~L~Ls~N--~l~g~-~p~~~~~~l~~L~~L~L~~N-~l~g~ip~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~   76 (253)
                      +++|+.|++++.  .++.. +..... ++++|+.|+++++ .+++.....+..+++|++|+|++ +.+++.....+++++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~-~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~  225 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  225 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             ccccchhhhccccccccccccccccc-ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC
Confidence            467899999874  34432 233333 7899999999875 57777778888999999999998 577776667788888


Q ss_pred             cCcccc
Q 048290           77 AMTYER   82 (253)
Q Consensus        77 ~L~~L~   82 (253)
                      +|+.|+
T Consensus       226 ~L~~L~  231 (284)
T d2astb2         226 TLKTLQ  231 (284)
T ss_dssp             TCCEEE
T ss_pred             CCCEEe
Confidence            999888

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.9e-06  Score=70.52  Aligned_cols=79  Identities=15%  Similarity=0.080  Sum_probs=48.2

Q ss_pred             CcceEEECCCCcCccCCCh----hHhhcCCCccEEEccCCcCccc----Cccccc-CCCCCCEEeccCCccCCC----cC
Q 048290            3 SQLRVLDLGKNAFFGEIPT----WTGESLQNLIVLSLKSNKFHGN----IPYQLC-HLGFIQVLDLSLNIISGK----IP   69 (253)
Q Consensus         3 ~~L~~L~Ls~N~l~g~~p~----~~~~~l~~L~~L~L~~N~l~g~----ip~~~~-~l~~L~~LdLs~N~l~g~----ip   69 (253)
                      ..|+.+++++|.++..-..    .+. ..++|+.|+|++|+++..    ++..+. ..+.|++|+|++|.++..    ++
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccc-cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            4577777777777644222    222 456777777777777542    233332 355677777777777632    34


Q ss_pred             hhhhccccCcccc
Q 048290           70 KCFNNFSAMTYER   82 (253)
Q Consensus        70 ~~l~~l~~L~~L~   82 (253)
                      ..+...++|+.|+
T Consensus       391 ~~l~~~~~L~~L~  403 (460)
T d1z7xw1         391 ATLLANHSLRELD  403 (460)
T ss_dssp             HHHHHCCCCCEEE
T ss_pred             HHHhcCCCCCEEE
Confidence            4555667777777

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.46  E-value=1.5e-05  Score=66.32  Aligned_cols=80  Identities=16%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             CCcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCccc-----CcccccCCCCCCEEeccCCccCCC----c
Q 048290            2 CSQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGN-----IPYQLCHLGFIQVLDLSLNIISGK----I   68 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~-----ip~~~~~l~~L~~LdLs~N~l~g~----i   68 (253)
                      ...|+.|++++|+++..    +...+. ..+.|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    +
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhh-hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            35677888888877632    233344 577888888888887632     233466677888888888877533    3


Q ss_pred             ChhhhccccCcccc
Q 048290           69 PKCFNNFSAMTYER   82 (253)
Q Consensus        69 p~~l~~l~~L~~L~   82 (253)
                      ...+..+++|+.|+
T Consensus       236 ~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         236 AIALKSWPNLRELG  249 (344)
T ss_dssp             HHHGGGCTTCCEEE
T ss_pred             cccccccccchhhh
Confidence            34556677777777

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.29  E-value=4.1e-05  Score=63.55  Aligned_cols=81  Identities=11%  Similarity=0.094  Sum_probs=44.6

Q ss_pred             CCcceEEECCCCcCc----cCCC--------hhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEeccCCccC
Q 048290            2 CSQLRVLDLGKNAFF----GEIP--------TWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDLSLNIIS   65 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~----g~~p--------~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~   65 (253)
                      +++|+.|++++|.++    ..+.        .......+.|+.|++++|+++..    +...+...+.|+.|+|++|.++
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccc
Confidence            456777777777541    0010        01111456777777777776522    2233455667777777777765


Q ss_pred             CC-----cChhhhccccCcccc
Q 048290           66 GK-----IPKCFNNFSAMTYER   82 (253)
Q Consensus        66 g~-----ip~~l~~l~~L~~L~   82 (253)
                      ..     +...+...++|+.|+
T Consensus       200 ~~g~~~~l~~~l~~~~~L~~L~  221 (344)
T d2ca6a1         200 PEGIEHLLLEGLAYCQELKVLD  221 (344)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEE
T ss_pred             ccccccchhhhhcchhhhcccc
Confidence            32     223355566666666

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.66  E-value=0.00037  Score=51.77  Aligned_cols=80  Identities=9%  Similarity=0.061  Sum_probs=55.8

Q ss_pred             CCcceEEECCCC-cCccC----CChhHhhcCCCccEEEccCCcCcccC----cccccCCCCCCEEeccCCccCCCcC---
Q 048290            2 CSQLRVLDLGKN-AFFGE----IPTWTGESLQNLIVLSLKSNKFHGNI----PYQLCHLGFIQVLDLSLNIISGKIP---   69 (253)
Q Consensus         2 l~~L~~L~Ls~N-~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~i----p~~~~~l~~L~~LdLs~N~l~g~ip---   69 (253)
                      .++|+.|+|+++ .++..    +-..+. ..+.|+.|+|++|.+...-    ...+...+.|+.|+|++|.++..--   
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~-~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHh-hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            578999999974 56532    222344 5678999999999997432    2345567899999999999874322   


Q ss_pred             -hhhhccccCcccc
Q 048290           70 -KCFNNFSAMTYER   82 (253)
Q Consensus        70 -~~l~~l~~L~~L~   82 (253)
                       ..+..-++|+.|+
T Consensus        93 ~~aL~~n~sL~~L~  106 (167)
T d1pgva_          93 LRSTLVTQSIVEFK  106 (167)
T ss_dssp             HHHTTTTCCCSEEE
T ss_pred             HHHHHhCCcCCEEE
Confidence             2344556788877

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.58  E-value=0.001  Score=49.23  Aligned_cols=80  Identities=11%  Similarity=0.025  Sum_probs=56.6

Q ss_pred             CCcceEEECCCCcCccC----CChhHhhcCCCccEEEccCCcCcccC----cccccCCCCCCEEeccCCccCCC------
Q 048290            2 CSQLRVLDLGKNAFFGE----IPTWTGESLQNLIVLSLKSNKFHGNI----PYQLCHLGFIQVLDLSLNIISGK------   67 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~i----p~~~~~l~~L~~LdLs~N~l~g~------   67 (253)
                      .+.|+.|+|++|.++..    +...+. ..+.|+.|+|++|.++..-    -..+...+.|+.|+|++|.+...      
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~-~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhh-hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            46799999999999743    234454 5789999999999998532    23467778899999999976532      


Q ss_pred             -cChhhhccccCcccc
Q 048290           68 -IPKCFNNFSAMTYER   82 (253)
Q Consensus        68 -ip~~l~~l~~L~~L~   82 (253)
                       +...+..-++|+.++
T Consensus       122 ~l~~~L~~n~sL~~l~  137 (167)
T d1pgva_         122 DMMMAIEENESLLRVG  137 (167)
T ss_dssp             HHHHHHHHCSSCCEEE
T ss_pred             HHHHHHHhCCCccEee
Confidence             223344445666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.09  E-value=0.00081  Score=49.59  Aligned_cols=80  Identities=13%  Similarity=0.068  Sum_probs=53.3

Q ss_pred             CCcceEEECCC-CcCccC----CChhHhhcCCCccEEEccCCcCcccC----cccccCCCCCCEEeccCCccCCCcC---
Q 048290            2 CSQLRVLDLGK-NAFFGE----IPTWTGESLQNLIVLSLKSNKFHGNI----PYQLCHLGFIQVLDLSLNIISGKIP---   69 (253)
Q Consensus         2 l~~L~~L~Ls~-N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~i----p~~~~~l~~L~~LdLs~N~l~g~ip---   69 (253)
                      .++|+.|+|++ +.++..    +-..+. ..++|+.|+|++|.++...    -..+...++++.+++++|.+...--   
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            57899999997 556532    223333 5788999999999887432    2235667889999999998863322   


Q ss_pred             -hhhhccccCcccc
Q 048290           70 -KCFNNFSAMTYER   82 (253)
Q Consensus        70 -~~l~~l~~L~~L~   82 (253)
                       ..+...++|+.++
T Consensus        95 ~~~l~~~~~L~~l~  108 (166)
T d1io0a_          95 VEALQSNTSLIELR  108 (166)
T ss_dssp             HHGGGGCSSCCEEE
T ss_pred             HHHHHhCccccEEe
Confidence             3445556666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.44  E-value=0.0067  Score=44.35  Aligned_cols=80  Identities=10%  Similarity=0.054  Sum_probs=56.5

Q ss_pred             CCcceEEECCCCcCccCC----ChhHhhcCCCccEEEccCCcCccc----CcccccCCCCCCEEec--cCCccCCC----
Q 048290            2 CSQLRVLDLGKNAFFGEI----PTWTGESLQNLIVLSLKSNKFHGN----IPYQLCHLGFIQVLDL--SLNIISGK----   67 (253)
Q Consensus         2 l~~L~~L~Ls~N~l~g~~----p~~~~~~l~~L~~L~L~~N~l~g~----ip~~~~~l~~L~~LdL--s~N~l~g~----   67 (253)
                      .+.|+.|+|++|.++..-    -..+. ..+.++.|++++|.++..    +-..+...++|+.++|  ++|.+...    
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~-~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHh-hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            578999999999987542    23444 578999999999998743    2345677888987555  56777532    


Q ss_pred             cChhhhccccCcccc
Q 048290           68 IPKCFNNFSAMTYER   82 (253)
Q Consensus        68 ip~~l~~l~~L~~L~   82 (253)
                      +...+...+.|+.|+
T Consensus       124 La~~L~~n~~L~~L~  138 (166)
T d1io0a_         124 IANMLEKNTTLLKFG  138 (166)
T ss_dssp             HHHHHHHCSSCCEEE
T ss_pred             HHHHHHhCCCcCEEe
Confidence            334556677777776