Citrus Sinensis ID: 048294

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MVISTGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVYQ
ccccccccHHHHHHHHHHcccHHHHHHcccccccHHHHcccHHHHHHHHccccccccEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEcccEEEEEccccccEEEccccccccccccccEEEEEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEcccccccccccccccEEEEcccEEEEEEEcccccEEEEEEEccccEEEEEcccccccccEEEEEEEccEEEEEEEEccccEEEEEEEccccEEEEEEEcccccccccEEEEEcccEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEEccccccccccccccEEEccccEEEEEc
cccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHcccEEEEEEEcccccEEEEEEcccccccccccccccccccccccEEEEEEEEccEEEEEEcccccEEEEccccccEEEcccccccccccccEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEccccccEEEEcccccccccccccccEEEccEEEEEEEEcccccEEEEEEEccccccccccccccccccEEEEEEEHcEEEEEEEcccccEEEEEEEEccEEEEEEEEccccccccccEEEcccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEEEEEEEEcccccEEEEEEEcEEEEEEcc
mvistgdfYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIvdetdpfdypldlFHLYLDETLEDLSslildplqpvcgtaggpydgifcilgndnrltlwnpankeyrhvpkcriifpryttifrtnfgfgrdpknnkYKLVLIFTLwdeknsdlydfsQTAVYNLSTNSWRYFESFKsshyhmpwyhdcvnldgGCYWLLELRSNGHKVVLSFDlgdevyeeiqgpclpqsVYVVMGLYKECISLLVLKTIEFCFEIWTMKDkewtkkltvgpfegmfhplgfwktggffaenqsnqmilydprteemknfglnslhFQVFNytetlipikgddslsgffeipwhilgvyq
mvistgdfYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPankeyrhvpkcriifpRYTTIFRtnfgfgrdpknnKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVYQ
MVISTGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVYQ
****TGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVY*
*****GDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVYQ
MVISTGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVYQ
*****GDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVYQ
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MVISTGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDPFDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSVYVVMGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPFEGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKNFGLNSLHFQVFNYTETLIPIKGDDSLSGFFEIPWHILGVYQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q9LPW2416 Putative F-box/kelch-repe yes no 0.741 0.668 0.267 7e-14
Q9LU24360 Putative F-box protein At no no 0.546 0.569 0.276 1e-12
Q8GXC7427 F-box/kelch-repeat protei no no 0.858 0.754 0.239 2e-12
Q7X7A9312 F-box protein At1g11270 O no no 0.576 0.692 0.292 6e-12
Q9LX89445 F-box protein At5g10340 O no no 0.632 0.532 0.278 9e-12
Q9LUP7381 Putative F-box protein At no no 0.754 0.742 0.238 2e-11
Q9LUP5388 F-box/kelch-repeat protei no no 0.909 0.878 0.250 2e-11
Q9LUI8372 Putative F-box/kelch-repe no no 0.733 0.739 0.248 6e-11
Q9CA02388 F-box protein At3g49510 O no no 0.597 0.577 0.242 5e-10
Q9FGY4359 F-box protein At5g49610 O no no 0.848 0.885 0.254 6e-10
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function desciption
 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 142/321 (44%), Gaps = 43/321 (13%)

Query: 1   MVISTGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVF 60
           ++I++    +D V  I LK PVK+L+RFK + K W +  E   F + HLK  E +  V  
Sbjct: 26  LMIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSH-VDH 84

Query: 61  YSIVDETDPFDYPLDL-FHLYLDETLEDLSSLILD-PL---QPVCGTAGGPYDGIFCILG 115
             ++  T+ ++  +++ F     E++  LSS + + P     P+  +     DGIFCI  
Sbjct: 85  PKVMIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYASESC--DGIFCIHS 142

Query: 116 NDNR-LTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRD---------PKNNKYKLV 165
              + + + NPA + +R +P  R  F  +           RD          K   YKLV
Sbjct: 143 PKTQDIYVVNPATRWFRQLPPAR--FQIFMHKLNPTLDTLRDMIPVNHLAFVKATDYKLV 200

Query: 166 LIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDC--VNLDGGCYWL 223
            ++      NSD    ++  V++   N+WRY     S  Y +  YHD    + +G  YW 
Sbjct: 201 WLY------NSDASRVTKCEVFDFKANAWRYLTCIPS--YRI--YHDQKPASANGTLYWF 250

Query: 224 LELRSNGHKVVLSFDLGDEVYEEIQGPCLPQS---VYVVMGLYKECISLLVLKT---IEF 277
            E   N    V++ D+  E++  +  P L  S    ++ M +     SL + +T    + 
Sbjct: 251 TET-YNAEIKVIALDIHTEIFRLLPKPSLIASSEPSHIDMCIIDN--SLCMYETEGDKKI 307

Query: 278 CFEIWTMKDKE--WTKKLTVG 296
             EIW +K  E  W K  T+ 
Sbjct: 308 IQEIWRLKSSEDAWEKIYTIN 328

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUP7|FB154_ARATH Putative F-box protein At3g17500 OS=Arabidopsis thaliana GN=At3g17500 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUP5|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2 Back     alignment and function description
>sp|Q9LUI8|FBK65_ARATH Putative F-box/kelch-repeat protein At3g22730 OS=Arabidopsis thaliana GN=At3g22730 PE=4 SV=1 Back     alignment and function description
>sp|Q9CA02|FB198_ARATH F-box protein At3g49510 OS=Arabidopsis thaliana GN=At3g49510 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
224119696367 predicted protein [Populus trichocarpa] 0.874 0.893 0.325 9e-39
224133722443 predicted protein [Populus trichocarpa] 0.92 0.778 0.323 8e-38
316996546400 hypothetical protein [Pyrus pyrifolia] 0.885 0.83 0.306 2e-32
301069172393 MdFBX17 [Malus x domestica] 0.888 0.847 0.318 3e-31
198400307393 F-box protein FB1 [Malus x domestica] 0.888 0.847 0.320 4e-31
316996538393 hypothetical protein [Pyrus pyrifolia] 0.888 0.847 0.310 4e-30
451321023394 S-Locus F-box 3-S34 [Pyrus x bretschneid 0.866 0.824 0.298 6e-30
224117590441 f-box family protein [Populus trichocarp 0.893 0.759 0.310 9e-30
197253333394 SFBB21-beta [Pyrus x bretschneideri] 0.866 0.824 0.298 9e-30
316996533394 hypothetical protein [Pyrus pyrifolia] 0.882 0.840 0.285 2e-28
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 31/359 (8%)

Query: 10  EDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVFYSIVDETDP 69
           ED +  IL   PVK+LL+FKCVCKSWY +   S FI  HL N  N  +   + +     P
Sbjct: 11  EDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNN-IKSGHLLAHFVCP 69

Query: 70  FDYPLDLFHLYLDETLEDLSSLILDPLQPVCGTAGGPYDGIFCILGNDNRLT-LWNPANK 128
                 L  L+ DE+L DLS   LDP  P+ G   GP +GIF +   D+  + LWNPA K
Sbjct: 70  -----QLLELFQDESLTDLSHQGLDP--PIRGRLCGPCNGIFYVDSEDSSGSGLWNPATK 122

Query: 129 EYRHVP---KCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWD-EKNSDLYDFSQT 184
           E++ +P   + +   P Y   +  ++GFG DP  N YK+V+I   +  E   + +  S  
Sbjct: 123 EFKLLPEKIRNKSSLPLY---YEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSLV 179

Query: 185 AVYNLSTNSWRYFESFKSSHYHMPWYHDC-VNLDGGCYWLLELRSNGH----KVVLSFDL 239
            VY L T+SWR + S    +  +  Y  C  N+DG  YW       GH     V+LSF++
Sbjct: 180 IVYTLRTDSWRCWGSLDQGYTLLGNY--CYTNVDGVYYW-----QAGHGVHMNVILSFNM 232

Query: 240 GDEVYEEIQGPCLPQSVYVV-MGLYKECISLLVLKTIEFCFEIWTMKDKEWTKKLTVGPF 298
             + ++EIQ P   +  Y   + LY + I+   +  +E   +IW + +  W ++    P 
Sbjct: 233 ATDAFQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPL 292

Query: 299 EGMFHPLGFWKTGGFFAENQSNQMILYDPRTEEMKN--FGLNSLHFQVFNYTETLIPIK 355
             + +P+  WK G    ++ ++Q++LYD   +E+K+  F    + +++  Y E+L+ IK
Sbjct: 293 LELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVYRESLVSIK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|316996546|dbj|BAJ52236.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|301069172|dbj|BAJ11965.1| MdFBX17 [Malus x domestica] Back     alignment and taxonomy information
>gi|198400307|gb|ACH87163.1| F-box protein FB1 [Malus x domestica] Back     alignment and taxonomy information
>gi|316996538|dbj|BAJ52228.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|451321023|emb|CCH26215.2| S-Locus F-box 3-S34 [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|197253333|gb|ACH54101.1| SFBB21-beta [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|316996533|dbj|BAJ52224.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.746 0.673 0.271 2.9e-15
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.757 0.780 0.245 8.8e-15
TAIR|locus:2090567388 AT3G17530 "AT3G17530" [Arabido 0.909 0.878 0.250 1e-13
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.621 0.545 0.254 6.8e-13
TAIR|locus:2142539445 AT5G10340 "AT5G10340" [Arabido 0.632 0.532 0.278 7.3e-13
TAIR|locus:2202099312 AT1G11270 "AT1G11270" [Arabido 0.6 0.721 0.293 1.3e-12
TAIR|locus:2075790370 AT3G10430 "AT3G10430" [Arabido 0.562 0.570 0.270 4.7e-12
TAIR|locus:2041016420 AT2G43260 [Arabidopsis thalian 0.864 0.771 0.241 8.8e-12
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.912 0.942 0.248 9.9e-12
TAIR|locus:2202023364 AT1G12170 "AT1G12170" [Arabido 0.864 0.890 0.264 1.3e-11
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 216 (81.1 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 86/317 (27%), Positives = 142/317 (44%)

Query:     1 MVISTGDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMFIREHLKNEENTRLVVF 60
             ++I++    +D V  I LK PVK+L+RFK + K W +  E   F + HLK  E +  V  
Sbjct:    26 LMIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSH-VDH 84

Query:    61 YSIVDETDPFDYPLDL-FHLYLDETLEDLSSLILD-PL---QPVCGTAGGPYDGIFCILG 115
               ++  T+ ++  +++ F     E++  LSS + + P     P+   A    DGIFCI  
Sbjct:    85 PKVMIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIY--ASESCDGIFCIHS 142

Query:   116 NDNR-LTLWNPANKEYRHVPKCRI-IF-----PRYTTIFRTNFGFGRDP--KNNKYKLVL 166
                + + + NPA + +R +P  R  IF     P   T+ R           K   YKLV 
Sbjct:   143 PKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTL-RDMIPVNHLAFVKATDYKLVW 201

Query:   167 IFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDC--VNLDGGCYWLL 224
             ++      NSD    ++  V++   N+WRY     S  Y +  YHD    + +G  YW  
Sbjct:   202 LY------NSDASRVTKCEVFDFKANAWRYLTCIPS--YRI--YHDQKPASANGTLYWFT 251

Query:   225 ELRSNGHKVVLSFDLGDEVYEEIQGPCLPQSV---YVVMGLYKECISLLVLK-TIEFCFE 280
             E   N    V++ D+  E++  +  P L  S    ++ M +    + +   +   +   E
Sbjct:   252 ETY-NAEIKVIALDIHTEIFRLLPKPSLIASSEPSHIDMCIIDNSLCMYETEGDKKIIQE 310

Query:   281 IWTMKDKE--WTKKLTV 295
             IW +K  E  W K  T+
Sbjct:   311 IWRLKSSEDAWEKIYTI 327
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142539 AT5G10340 "AT5G10340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202023 AT1G12170 "AT1G12170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 6e-19
pfam07734159 pfam07734, FBA_1, F-box associated 1e-04
pfam0064648 pfam00646, F-box, F-box domain 0.001
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.004
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 84.3 bits (209), Expect = 6e-19
 Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 19/198 (9%)

Query: 105 GPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKL 164
            P DG+ C      RL +WNP+  + R +P       R +      +  G DP   +YK+
Sbjct: 2   VPCDGLICF-SYGKRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKV 57

Query: 165 VLIFTLWDEKNSDLYDFSQTAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWL- 223
           +          S   + S+  VY L +NSWR   + + S  H P     V ++G  Y+L 
Sbjct: 58  LCFS-----DRSGNRNQSEHQVYTLGSNSWR---TIECSPPHHPLKSRGVCINGVLYYLA 109

Query: 224 LELRSNGHKVVLSFDLGDEVYEE-IQGPCLPQSV--YVVMGLYKECISLLVLKTIEFCFE 280
             L++N    ++SFD+  E ++E I  PC       Y+ +  YK  +++L  K     F+
Sbjct: 110 YTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFD 169

Query: 281 IWTMKDK---EWTKKLTV 295
           +W + D    EW+K  TV
Sbjct: 170 LWVLNDAGKQEWSKLFTV 187

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|219544 pfam07734, FBA_1, F-box associated Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.68
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.65
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.34
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.87
PHA02713557 hypothetical protein; Provisional 98.74
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.7
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.67
PHA03098534 kelch-like protein; Provisional 98.64
PLN02153341 epithiospecifier protein 98.52
PLN02193470 nitrile-specifier protein 98.49
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.48
PHA02713557 hypothetical protein; Provisional 98.46
PHA02790480 Kelch-like protein; Provisional 98.37
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.29
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.2
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.01
PHA03098534 kelch-like protein; Provisional 97.92
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.89
PLN02153341 epithiospecifier protein 97.88
PHA02790480 Kelch-like protein; Provisional 97.87
PLN02193470 nitrile-specifier protein 97.68
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.68
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.57
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.37
KOG4693392 consensus Uncharacterized conserved protein, conta 96.95
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 96.8
KOG4693392 consensus Uncharacterized conserved protein, conta 96.58
KOG1230 521 consensus Protein containing repeated kelch motifs 96.55
KOG2997366 consensus F-box protein FBX9 [General function pre 96.06
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.5
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 95.23
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 94.61
KOG1230 521 consensus Protein containing repeated kelch motifs 94.56
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 91.62
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 91.6
PF1396450 Kelch_6: Kelch motif 91.53
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.12
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 90.53
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 90.22
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 89.69
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 89.35
KOG4341483 consensus F-box protein containing LRR [General fu 87.18
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 87.05
smart00284255 OLF Olfactomedin-like domains. 85.36
PF1396450 Kelch_6: Kelch motif 84.85
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 84.66
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 82.79
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 81.89
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 81.62
smart0061247 Kelch Kelch domain. 81.19
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=3.3e-35  Score=260.89  Aligned_cols=215  Identities=26%  Similarity=0.414  Sum_probs=162.4

Q ss_pred             eeeecceEEEeeCCCeEEEEcccccceeccCCCCccCCCcccccceeeeEeecCCCCCeEEEEEEEEecCCCCCCCCCce
Q 048294          104 GGPYDGIFCILGNDNRLTLWNPANKEYRHVPKCRIIFPRYTTIFRTNFGFGRDPKNNKYKLVLIFTLWDEKNSDLYDFSQ  183 (375)
Q Consensus       104 ~~s~nGLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~  183 (375)
                      ++|||||||+... ..++||||+||+++.||+++....  ...... ++||||+.+++||||++......     .....
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~--~~~~~~-~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~   71 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRS--NKESDT-YFLGYDPIEKQYKVLCFSDRSGN-----RNQSE   71 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccc--ccccce-EEEeecccCCcEEEEEEEeecCC-----CCCcc
Confidence            4799999999876 459999999999999997754211  011123 89999999999999999764321     13568


Q ss_pred             EEEEEcCCCCceeecccCCcccccCCCCcceEeCccEEEeeeeccCCc-eEEEEEECCCceee-eecCCCCCCCc--cce
Q 048294          184 TAVYNLSTNSWRYFESFKSSHYHMPWYHDCVNLDGGCYWLLELRSNGH-KVVLSFDLGDEVYE-EIQGPCLPQSV--YVV  259 (375)
Q Consensus       184 ~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fDl~~e~~~-~i~lP~~~~~~--~~~  259 (375)
                      ++|||+++++||.++..++..  ..... +|++||++||++....... ..|++||+++|+|+ .+++|......  ...
T Consensus        72 ~~Vys~~~~~Wr~~~~~~~~~--~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSPPHH--PLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             EEEEEeCCCCccccccCCCCc--cccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            999999999999998543221  12334 8999999999995433222 38999999999999 59999765422  245


Q ss_pred             eEEecCeEEEEEecCCCcEEEEEEEcC---ceeeEEEEECCC--CCc---cccEEEeecCcEEEEecC--Ce-EEEEeCC
Q 048294          260 MGLYKECISLLVLKTIEFCFEIWTMKD---KEWTKKLTVGPF--EGM---FHPLGFWKTGGFFAENQS--NQ-MILYDPR  328 (375)
Q Consensus       260 l~~~~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~--~~~---~~~~~~~~~~~ll~~~~~--~~-~~~yd~~  328 (375)
                      +++++|+||++........++||+|++   +.|+|+++|+..  ..+   ..++++.++|+|++...+  +. +++||++
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~  228 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG  228 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence            778999999998854345699999997   679999999842  122   347888899999887764  44 9999998


Q ss_pred             CC
Q 048294          329 TE  330 (375)
Q Consensus       329 ~~  330 (375)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.11
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.05
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.99
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.95
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.94
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.94
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.91
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.89
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.8
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.74
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.71
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.69
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.65
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.65
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.59
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.53
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.48
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.46
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.45
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.43
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.86
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.54
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.41
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.41
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.35
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.66
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.22
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 95.51
3jrp_A379 Fusion protein of protein transport protein SEC13 93.29
3jro_A 753 Fusion protein of protein transport protein SEC13 91.81
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 91.44
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 91.15
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 90.47
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 90.27
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 87.84
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 87.12
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 86.72
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 86.08
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 84.64
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 84.62
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 82.9
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 82.41
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 82.17
4e54_B435 DNA damage-binding protein 2; beta barrel, double 81.91
4e54_B435 DNA damage-binding protein 2; beta barrel, double 80.59
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 80.54
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 80.44
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 80.42
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
Probab=99.11  E-value=1.6e-11  Score=109.96  Aligned_cols=50  Identities=18%  Similarity=0.311  Sum_probs=46.9

Q ss_pred             ccCCCchHHHHHHHHccCCccccc-eeeeccccchhhcCChHHHHHHhhcc
Q 048294            3 ISTGDFYEDAVRAILLKQPVKSLL-RFKCVCKSWYALFEDSMFIREHLKNE   52 (375)
Q Consensus         3 ~~~~~LP~Dll~eIL~rLP~ksl~-r~r~VcK~W~~li~~p~F~~~~~~~~   52 (375)
                      ..+..||+||+.+||+|||+++|+ ||++|||+|+++|+++.|.+.+..+.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            466799999999999999999999 99999999999999999999998765
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 3e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 10 EDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMF 44
          ++ +  I     +  LL+   VCK WY L  D   
Sbjct: 6  DELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.23
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.6
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.47
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.23
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.01
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 97.97
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.71
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.5
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 85.02
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.5e-13  Score=80.57  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=36.9

Q ss_pred             CCchHHHHHHHHccCCccccceeeeccccchhhcCChHH
Q 048294            6 GDFYEDAVRAILLKQPVKSLLRFKCVCKSWYALFEDSMF   44 (375)
Q Consensus         6 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F   44 (375)
                      ..||+|++.+||++||+++|+|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999999864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure