Citrus Sinensis ID: 048308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKPQSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRISH
Secondary Structure (PSIPRED)
ccccccEEEEEccEEEEEEccccccHHHHHHHHHccccccEEEEEEEEcccccccccccccccEEcccccccccHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccHHHHHHHHHHccccEEEEccccccccccHHccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEcccEEEEEEccccccHHHHHHHHHcccccccEEEEEEEccccccHHHHEEEEEEEccccccccEEHHHHHHHHHHHccccHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
milkgirgvSSLGELLAIlgpsgrgkttlpttlggrlstgetrgnidynnnplsrtvkrktgfvahSNVFYLHLTVTETLVFIALFRLPIKRVSRAQEllinpsllfldepasgldstIAKQILLNsegnslhvgkgdgvMSYFVgigfepsaamnpsdfLLDLangvvsgdpkdDQKALKETLISAYKSNLSEKLKASFQevgdhsligpgnkknsnwSTTWWQQSSELLKRNfrqsssfcgsKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKtigdlpmeltlPTVFVVVTYWMARIKsttpwlikpqSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLllpsqykandtcyaglSHQIICVAALAVMLLGSRLAAYDALMGIGRISH
Flexible Loop (DISEMBL)
milkgirgvsSLGELLAIlgpsgrgkttlpttlggrlstgetrgnidynnnplsrtvKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGdhsligpgnkknsnWSTTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKsttpwlikpqSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRISH
Low Complexity Region (SEG)
MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKnsnwsttwwqqssELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKPQSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRISH
Disordered region (IsUnstruct)
*******GVSSLGELLAILG*************************IDYN**PLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV************************************************NWSTTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKPQSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIG****
Disordered Region (DISOPRED)
MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLIS*********************************STTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKPQSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRI**
Disordered Region (DISEMBL)
MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS********ALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKPQSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRISH
Disordered Region (DISPRO)
MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGD*****P**KKNSNWSTTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKPQSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRIS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKPQSIRLAIGAVLMKQKVASTITATIVLQYLLQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRISH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9SZR9	638	ABC transporter G family	yes	no	0.980	0.634	0.359	4e-73
Q9C6W5	648	ABC transporter G family	no	no	0.975	0.621	0.353	7e-73
Q7XA72	672	ABC transporter G family	no	no	0.963	0.592	0.329	8e-70
Q9LK50	685	ABC transporter G family	no	no	0.905	0.545	0.301	9e-46
Q84TH5	662	ABC transporter G family	no	no	0.484	0.302	0.373	5e-40
Q93YS4	751	ABC transporter G family	no	no	0.571	0.314	0.319	1e-36
Q9FT51	737	ABC transporter G family	no	no	0.571	0.320	0.318	4e-33
Q4GZT4	655	ATP-binding cassette sub-	yes	no	0.898	0.566	0.228	3e-19
Q9ZU35	725	ABC transporter G family	no	no	0.573	0.326	0.284	2e-17
Q9C8J8	678	ABC transporter G family	no	no	0.549	0.334	0.265	3e-17

>sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2

 Score =  275 bits (704), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 206/573 (35%), Positives = 274/573 (47%), Gaps = 168/573 (29%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR--GNIDYNNNPLSRTVKR 59
           ILKG+ G+   GE+LA+LGPSG GKT+L T LGGR+  G+ +  GNI YNN PLS+ VKR
Sbjct: 66  ILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAVKR 125

Query: 60  KTGFVAHSNVFYLHLTVTETLVFIALFRLP------------------------------ 89
            TGFV   +  Y +LTVTETLVF AL RLP                              
Sbjct: 126 TTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIG 185

Query: 90  -----------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--------------- 123
                       KRVS  QE+LINPSLLFLDEP SGLDST A++I               
Sbjct: 186 GPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVV 245

Query: 124 -----------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAA-MNPSDFLLDLA 165
                            LL SEGN ++ G G   M YF  +G+ P    +NPSDFLLD+A
Sbjct: 246 TTIHQPSSRLFYMFDKLLLLSEGNPVYFGLGSNAMDYFASVGYSPLVERINPSDFLLDIA 305

Query: 166 NGVVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNS-------- 217
           NGV S D     +A+K  L++ YK+NL   L +   EV     +    +++S        
Sbjct: 306 NGVGS-DESQRPEAMKAALVAFYKTNL---LDSVINEVKGQDDLCNKPRESSRVATNTYG 361

Query: 218 NWSTTWWQQSSELLKRNFRQS--SSFCGSKL------------------LSQLTSH--RI 255
           +W TTWWQQ   LLKR  +Q    SF G K+                  +S+L      +
Sbjct: 362 DWPTTWWQQFCVLLKRGLKQRRHDSFSGMKVAQIFIVSFLCGLLWWQTKISRLQDQIGLL 421

Query: 256 HIINSHICY------CFNF----------------RLSSYFVAKTIGDLPMELTLPTVFV 293
             I+S   +       F F                RLS YF+++ +GDLPMEL LPT F+
Sbjct: 422 FFISSFWAFFPLFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLPMELILPTCFL 481

Query: 294 VVTYWMARIKSTTPWLI-----------KPQSIRLAIGAVLMKQKVASTITATIVLQYLL 342
           V+TYWMA +                       + LA+GA++M QK A+T+ + I+L +LL
Sbjct: 482 VITYWMAGLNHNLANFFVTLLVLLVHVLVSGGLGLALGALVMDQKSATTLGSVIMLTFLL 541

Query: 343 ------QRLPVFTSWFEYASLTYYSYRLLLPSQYKAND----------TCYA-------- 378
                 Q +PVF SW +Y S+ YY+Y+LL+  QY AN+           C+         
Sbjct: 542 AGGYYVQHVPVFISWIKYVSIGYYTYKLLILGQYTANELYPCGDNGKLRCHVGDFEGIKH 601

Query: 379 -GLSHQIICVAALAVMLLGSRLAAYDALMGIGR 410
            G +  ++   AL  ML+  R+ AY AL  IG+
Sbjct: 602 IGFNSGLVSALALTAMLVVYRVIAYIALTRIGK 634

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1

 Score =  275 bits (702), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 259/563 (46%), Gaps = 160/563 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL GI G+   GE LA+LGPSG GKTTL + LGGRLS   + G + YN  P S  +KR+T
Sbjct: 81  ILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKTFS-GKVMYNGQPFSGCIKRRT 139

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLP-------------------------------- 89
           GFVA  +V Y HLTV ETL F AL RLP                                
Sbjct: 140 GFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGP 199

Query: 90  ---------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----------------- 123
                     KRVS  QE+LINPSLL LDEP SGLDST A +I                 
Sbjct: 200 LFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTT 259

Query: 124 ---------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                          +L SEG+ ++ G     + YF  +GF  S  +NP+D LLDLANG+
Sbjct: 260 IHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANGI 319

Query: 169 VSGDPKD----DQKALKETLISAYKSNLSEKLKASFQEVGDHSL----IGPGNKKNSNWS 220
                K+    +QK +KETL+SAY+ N+S KLKA       HS         N K+  W 
Sbjct: 320 PPDTQKETSEQEQKTVKETLVSAYEKNISTKLKAELCNAESHSYEYTKAAAKNLKSEQWC 379

Query: 221 TTWWQQSSELLKRNFRQS--SSFCGSKLLSQLTSHRI------HIINSHI------CYCF 266
           TTWW Q + LL+R  R+    SF   ++   ++   +      H   SHI       + F
Sbjct: 380 TTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWWHTPKSHIQDRTALLFFF 439

Query: 267 N------------------------------FRLSSYFVAKTIGDLPMELTLPTVFVVVT 296
           +                              +RLSSYF+A+ +GDLP+EL LPT FV + 
Sbjct: 440 SVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPTAFVFII 499

Query: 297 YWMARIKSTTPWLI-----------KPQSIRLAIGAVLMKQKVASTITATIVLQYLL--- 342
           YWM  +K      I             Q + LA GA+LM  K A+T+ +   L +L+   
Sbjct: 500 YWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGG 559

Query: 343 ---QRLPVFTSWFEYASLTYYSYRLLLPSQYKAND--TCYA---------------GLSH 382
              Q++P F  W +Y S +YY Y+LLL  QY  +D   C                 GL++
Sbjct: 560 YYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCRVGDFPAIKSMGLNN 619

Query: 383 QIICVAALAVMLLGSRLAAYDAL 405
             I V  + VML+G RL AY AL
Sbjct: 620 LWIDVFVMGVMLVGYRLMAYMAL 642

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score =  264 bits (675), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 261/552 (47%), Gaps = 154/552 (27%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
           ++LK + G+   GELLA+LGPSG GKTTL T L GRL  G+  G + YN  P + +VKRK
Sbjct: 98  LVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQ-GKLSGTVSYNGEPFTSSVKRK 156

Query: 61  TGFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------ 90
           TGFV   +V Y HLTV ETL + AL RLP                               
Sbjct: 157 TGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGG 216

Query: 91  -----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---------------- 123
                      KRVS  QE+L+NPSLL LDEP SGLDST A +I                
Sbjct: 217 GLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVT 276

Query: 124 ----------------LLNSEGNSLHVGKGDGVMSYFVGIGFEP-SAAMNPSDFLLDLAN 166
                           L+ SEG  ++ G    VM YF  IG++P S+ +NP+DF+LDLAN
Sbjct: 277 TIHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLAN 336

Query: 167 GVVSG-------------DPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGN 213
           G+ S              D  ++Q ++K++LIS+YK NL   LK                
Sbjct: 337 GITSDTKQYDQIETNGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRTFPQDQTNARL 396

Query: 214 KKNS---NWSTTWWQQSSELLKRNFRQSS--SFCGSKLLSQLT----------SHRIHII 258
           +K +    W T+WW Q S LLKR  ++ S  SF G ++   ++            R+  +
Sbjct: 397 RKKAITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLSGLLWWHSRVAHL 456

Query: 259 NSHICYC------------FN--------------------FRLSSYFVAKTIGDLPMEL 286
              +               FN                    +RLSSY++A+T+GDLPMEL
Sbjct: 457 QDQVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMEL 516

Query: 287 TLPTVFVVVTYWMARIKSTTPWLIK-----------PQSIRLAIGAVLMKQKVASTITAT 335
            LPT+FV +TYWM  +K +    I             Q + LA+GA+LM  K A+T+++ 
Sbjct: 517 ILPTIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSV 576

Query: 336 IVLQYLL------QRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT--CYAGLSHQIICV 387
           ++L +LL      Q +P F +W +Y S ++Y Y+LL+  QY  ++   C +GL   ++  
Sbjct: 577 LMLVFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQYTWDEVYECGSGLHCSVMDY 636

Query: 388 AALAVMLLGSRL 399
             +  + +G+ +
Sbjct: 637 EGIKNLRIGNMM 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2

 Score =  184 bits (468), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 160/531 (30%), Positives = 219/531 (41%), Gaps = 157/531 (29%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKGI G +  GE+LA++GPSG GKTTL   +GGRL T   +G + YN+ P S +VKR+ 
Sbjct: 106 ILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRL-TDNVKGKLTYNDIPYSPSVKRRI 164

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------- 90
           GFV   +V    LTV ETL F A  RLP                                
Sbjct: 165 GFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGG 224

Query: 91  ----------KRVSRAQELLINPSLLFLDEPASGLDST-----------IAK-------- 121
                     KR S A E+L++PSLL LDEP SGLDST           +AK        
Sbjct: 225 FVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITT 284

Query: 122 -------------QILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                        ++LL SEG+    GK    M YF  +   P  AMNP++FLLDLA G 
Sbjct: 285 IHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQ 344

Query: 169 VS-------------GDPKDDQKALKETLISAYKSNLSEKLKAS---FQEVGDHSLIGPG 212
           VS               P D ++ L + L   YK++L  K K      ++  +H  I   
Sbjct: 345 VSDISLPDELLAAKTAQP-DSEEVLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQ 403

Query: 213 NKKNSNWSTTWWQQSSEL--LKRNFRQSSSFCGSKLLSQL--------------TSHRIH 256
            KK  +W+ +WW Q   L       R+   F   +L+  L              T    H
Sbjct: 404 VKK--DWTLSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAH 461

Query: 257 IINS-----HIC------------YCFNF--------------RLSSYFVAKTIGDLPME 285
           + +      +IC            Y F F              RLS Y+V  T+ D+   
Sbjct: 462 LRDQVGLMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAH 521

Query: 286 LTLPTVFVVVTYWMARIKSTTPWL-----------IKPQSIRLAIGAVLMKQKVASTITA 334
           +  PT F+++ Y+MA      P             I  Q     +GA ++  K A  I +
Sbjct: 522 VLYPTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIAS 581

Query: 335 TIVLQYLL------QRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAG 379
            +++ +LL      Q +P F  W +Y S  +Y +RLLL  QY A+     G
Sbjct: 582 LVLMLFLLTGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECG 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1

 Score =  165 bits (418), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 137/276 (49%), Gaps = 76/276 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL G+ G+ S GE +A+LGPSG GK+TL   + GRL      G I  N+  +++   ++T
Sbjct: 83  ILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRT 142

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLP-------------------------------- 89
           GFVA  ++ Y HLTV ETLVF+AL RLP                                
Sbjct: 143 GFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNT 202

Query: 90  ---------IKRVSRAQELLINPSLLFLDEPASGLDSTIA-------------------- 120
                     KRVS A ELLINPSLL LDEP SGLD+T A                    
Sbjct: 203 FIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVT 262

Query: 121 -------------KQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167
                          +LL SEG  L VGKG   M+YF  +GF P+  MNP+DFLLDLANG
Sbjct: 263 SIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANG 322

Query: 168 VVSGD--PKDDQKALKETLISAYKSNLSEKLKASFQ 201
           V   D   + ++  +++TL++AY + L+ ++K   +
Sbjct: 323 VCQTDGVTEREKPNVRQTLVTAYDTLLAPQVKTCIE 358

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 145/332 (43%), Gaps = 96/332 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL GI G  + GE+LA++GPSG GKTTL + L GR+S   T G++ YN+ P S+ +K K 
Sbjct: 179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------- 90
           GFV   +V + HLTV ETL + A  RLP                                
Sbjct: 239 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 298

Query: 91  ----------KRVSRAQELLINPSLLFLDEPASGLDSTIA-------------------- 120
                     KRVS   E++INPSLL LDEP SGLDST A                    
Sbjct: 299 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 358

Query: 121 ------------KQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                        +++L   G+ L+ GK    + YF  IG  P  AMNP++FLLDLANG 
Sbjct: 359 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 418

Query: 169 VSG----DPKDDQ-----------------KALKETLISAYKSNLSEKLKASFQEVG--D 205
           ++        DD+                  A+ E L+ AY++ ++E+ K    +    D
Sbjct: 419 INDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLD 478

Query: 206 HSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQ 237
                   +    W T WW+Q   L  R  ++
Sbjct: 479 EEAKAKSTRLKRQWGTCWWEQYCILFCRGLKE 510

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 140/330 (42%), Gaps = 94/330 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL GI G +  GELLA++GPSG GKTTL   LGGR +     G++ YN+ P S+ +K + 
Sbjct: 167 ILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSKHLKTRI 226

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------- 90
           GFV   +V + HLTV ETL + AL RLP                                
Sbjct: 227 GFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIGGS 286

Query: 91  ----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----------------- 123
                     KRV    E++ NPSLL LDEP S LDST A +I                 
Sbjct: 287 FVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTT 346

Query: 124 ---------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG- 167
                          ++ S G+ L+ GK    MSYF  IG  P  AMNP++FLLDL NG 
Sbjct: 347 IHQPSSRLFHRFDKLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLAMNPAEFLLDLVNGN 406

Query: 168 ----VVSGDPKDDQKALK--------------ETLISAYKSNLS--EKLKASFQEVGDHS 207
                V    K+  K ++              + L  AYK+ ++  EK+K       D  
Sbjct: 407 MNDISVPSALKEKMKIIRLELYVRNVKCDVETQYLEEAYKTQIAVMEKMKLMAPVPLDEE 466

Query: 208 LIGPGNKKNSNWSTTWWQQSSELLKRNFRQ 237
           +          W  +WW+Q   L  R  ++
Sbjct: 467 VKLMITCPKREWGLSWWEQYCLLSLRGIKE 496

Arabidopsis thaliana (taxid: 3702)

>sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 122/535 (22%), Positives = 186/535 (34%), Gaps = 164/535 (30%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL  I GV   G L AILGP+G GK++L   L  R       G++  N  P     K  +
Sbjct: 62  ILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANFKCNS 120

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------- 90
           G+V   +V    LTV E L F A  RLP                                
Sbjct: 121 GYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQ 180

Query: 91  ----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---------------- 124
                     KR S A EL+ +PS+LFLDEP +GLDS+ A  +L                
Sbjct: 181 FIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFS 240

Query: 125 ----------------LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                           L + G  +  G     + YF  IGF      NP+DF LD+ NG 
Sbjct: 241 IHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPYNNPADFFLDIINGD 300

Query: 169 VSG----------------DPKDDQKALKETLISAY-KSNLSEKLKASFQEV-GDHSLIG 210
            S                 +P      L E L   Y  S+  ++ K    +  GD     
Sbjct: 301 SSAVVLNREDIGDEANETEEPSKKDTPLIEKLAEFYVNSSFFKETKVELDKFSGDQRRKK 360

Query: 211 PGNKKNSNWSTTWWQQSSELLKRNFRQSSSFCGSKLLSQLTSHRIHIINSHICY------ 264
             + K   ++T++  Q   + +R+F+       + +   + +  + ++   I Y      
Sbjct: 361 LPSYKEVTYATSFCHQLKWISRRSFKNLLGNPQASIAQLIVTVFLGLVIGAIFYDLKNDP 420

Query: 265 -----------------CFN-----------------------FRLSSYFVAKTIGD-LP 283
                            CF+                       +R+SSYF  K + D LP
Sbjct: 421 AGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLP 480

Query: 284 MELTLPTVFVVVTYWMARIKSTTPWLI-----------KPQSIRLAIGAVLMKQKVASTI 332
           M +    +F  +TY++  +K                     S+ LAI A    Q V S  
Sbjct: 481 MRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAA---GQSVVSIA 537

Query: 333 TATIVLQYL-----------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTC 376
           T  + + ++           L+ +  + SW +Y S+  Y Y  L  +++   + C
Sbjct: 538 TLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRYGYAALQHNEFLGQNFC 592

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Bos taurus (taxid: 9913)

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 133/320 (41%), Gaps = 83/320 (25%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSRTV 57
            +LK + G +  G LLAI+GPSG GKTTL   L G+LS        G ++ N  P S + 
Sbjct: 89  FLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKP-SSSK 147

Query: 58  KRKTGFVAHSNVFYLHLTVTETLVFIALFRLP---------------------------- 89
             K  FV   ++F+  LTV ETL F A  +LP                            
Sbjct: 148 AYKLAFVRQEDLFFSQLTVRETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSC 207

Query: 90  -------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ-------------- 122
                         KR+S A EL+ +PS++F DEP +GLD+  A++              
Sbjct: 208 VGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHT 267

Query: 123 ------------------ILLNSEGNSLHVG-KGDGVMSYFVGIGFEPSAAMNPSDFLLD 163
                             I+L +EG  ++ G  G   ++YF   GF     +NP++FL D
Sbjct: 268 VICSIHQPRGSVYAKFDDIVLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLAD 327

Query: 164 LANGVVSGDPK--DDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIG--PGNKKNSNW 219
           L +   S        QK +   L+ A+    S  L A+   + + +  G  P  K     
Sbjct: 328 LISVDYSSSETVYSSQKRV-HALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVER 386

Query: 220 STTWWQQSSELLKRNFRQSS 239
           +  WW+Q   LLKR + Q+S
Sbjct: 387 TDGWWRQFFLLLKRAWMQAS 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 128/343 (37%), Gaps = 116/343 (33%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           +L G+ G      +LAI+GPSG GK+TL   L GRL+     GN+  +   L    KR+ 
Sbjct: 30  LLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLA-----GNVVMSGKVLVNGKKRRL 84

Query: 62  GF-----VAHSNVFYLHLTVTETLVFIALFRLP--------------------------- 89
            F     V   +V    LTV E++ + A  RLP                           
Sbjct: 85  DFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGLEECSDR 144

Query: 90  --------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA---KQILLN------ 126
                          KR+S A E+L  PSLLFLDEP SGLDS  A    QIL N      
Sbjct: 145 TIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASSGK 204

Query: 127 -----------------------SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLD 163
                                  S G +++ G+ +    +F   GF   +  NPSD  L 
Sbjct: 205 TVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEAGFPCPSRRNPSDHFLR 264

Query: 164 LANGVVSG----------------------------DPKDD--QKALKETLISAYKSNL- 192
             N                                 DP DD     ++ TL+  +K +L 
Sbjct: 265 CVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPTAEIRTTLVRKFKCSLY 324

Query: 193 SEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNF 235
           +   +A  QE+   S++G   ++     T WW+Q   L +R+F
Sbjct: 325 AAASRARIQEIA--SIVGIVTERKKGSQTNWWKQLRILTQRSF 365

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
147802534	603	hypothetical protein VITISV_007841 [Viti	0.980	0.671	0.412	1e-90
225461363	623	PREDICTED: ABC transporter G family memb	0.985	0.653	0.407	2e-89
255586556	632	ATP-binding cassette transporter, putati	0.992	0.648	0.385	4e-84
302143054	574	unnamed protein product [Vitis vinifera]	0.900	0.648	0.408	8e-82
356546890	602	PREDICTED: ABC transporter G family memb	0.985	0.676	0.366	2e-80
356546260	625	PREDICTED: ABC transporter G family memb	0.980	0.648	0.366	2e-79
449432932	628	PREDICTED: ABC transporter G family memb	0.990	0.651	0.358	8e-78
356514780	624	PREDICTED: ABC transporter G family memb	0.987	0.653	0.361	2e-75
449432930	617	PREDICTED: ABC transporter G family memb	0.987	0.661	0.375	3e-75
147817092	677	hypothetical protein VITISV_028138 [Viti	0.975	0.595	0.359	2e-74

>gi|147802534|emb|CAN62144.1| hypothetical protein VITISV_007841 [Vitis vinifera]

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 280/538 (52%), Gaps = 133/538 (24%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKGI G+   GE+LA+LGPSG GKTTL T LGGRL       +I YN  P S  +KR T
Sbjct: 63  ILKGITGIVLPGEMLAMLGPSGSGKTTLLTALGGRLGGRLNG-SITYNGKPFSNRMKRST 121

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLP-------------------------------- 89
           GFV   +V Y HLTVTETLVF AL RLP                                
Sbjct: 122 GFVTQDDVLYPHLTVTETLVFTALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNP 181

Query: 90  ---------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----------------- 123
                     KRVS  QE+LINPSLLFLDEP SGLDST A++I                 
Sbjct: 182 FLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMT 241

Query: 124 ---------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                          LL SEGN L+ GKG   M YF  IGF PS AMNPSDFLLDLANGV
Sbjct: 242 IHQPSSRLFYMFHKVLLLSEGNPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGV 301

Query: 169 VSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSS 228
           +S D  +D   +K+TL+ +Y+S + E LKA  +E+ +H   G  +K+   W+TTWWQQ S
Sbjct: 302 LSDDIHEDPTTIKQTLVLSYRSKIDEGLKAELREIDNHLQDGLEDKQLDRWATTWWQQCS 361

Query: 229 ELLKRNF--RQSSSFCGSKL---------------------LSQLTSHRIHIINSHICYC 265
            L +R    R+  SF G K+                     +      R+ +        
Sbjct: 362 VLFRRGVKERRHESFSGLKIGQIGLLFFCSGFWGFFPLFQAIFTFPQERMMLEKERSSGM 421

Query: 266 FNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIK-----------PQS 314
           +  RLSSYF+++TIGDLPMEL LPT+FV++TYWMA +K      +             QS
Sbjct: 422 Y--RLSSYFMSRTIGDLPMELVLPTIFVIITYWMAGLKPNAINFLHTLFALLFSVLVSQS 479

Query: 315 IRLAIGAVLMKQKVASTITATIVLQYLL------QRLPVFTSWFEYASLTYYSYRLLLPS 368
           + LA+GA +M QK A+ + + I+L +LL      Q +P F +W +Y S+++Y+Y+LLL S
Sbjct: 480 LGLALGAAVMDQKSATILGSVIMLSFLLAGGYYVQNVPHFIAWIKYVSISHYTYKLLLGS 539

Query: 369 QYKAND--------TC---------YAGLSHQIICVAALAVMLLGSRLAAYDALMGIG 409
           QYK  D        TC           GL  QI+   ALA+ML+G RL AY ALM IG
Sbjct: 540 QYKPGDIYPCSAKTTCLVGDFPAVQLVGLDKQILAAVALAIMLVGYRLIAYIALMRIG 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461363|ref|XP_002281949.1| PREDICTED: ABC transporter G family member 9-like [Vitis vinifera]

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 286/559 (51%), Gaps = 152/559 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKGI G+   GE+LA+LGPSG GKTTL T LGGRL       +I YN  P S  +KR T
Sbjct: 60  ILKGITGIVLPGEMLAMLGPSGSGKTTLLTALGGRLGGRLNG-SITYNGKPFSNRMKRST 118

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLP-------------------------------- 89
           GFV   +V Y HLTVTETLVF AL RLP                                
Sbjct: 119 GFVTQDDVLYPHLTVTETLVFTALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNP 178

Query: 90  ---------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----------------- 123
                     KRVS  QE+LINPSLLFLDEP SGLDST A++I                 
Sbjct: 179 FLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMT 238

Query: 124 ---------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                          LL SEGN L+ GKG   M YF  IGF PS AMNPSDFLLDLANGV
Sbjct: 239 IHQPSSRLFYMFHKVLLLSEGNPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGV 298

Query: 169 VSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSS 228
           +S D  +D   +K+TL+ +Y+S + E LKA  +E+ +H   G  +K+   W+TTWWQQ S
Sbjct: 299 LSDDIHEDPTTIKQTLVLSYRSKIDEGLKAELREIDNHLQDGLEDKQLDRWATTWWQQCS 358

Query: 229 ELLKRNF--RQSSSFCGSKL--------LSQL---TSHRIHIINS--HICYCFNF----- 268
            L +R    R+  SF G K+        LS L    S   H+ +    + +C  F     
Sbjct: 359 VLFRRGVKERRHESFSGLKIGQVLVVGFLSGLLWWQSDSSHLQDQIGLLFFCSGFWGFFP 418

Query: 269 ------------------------RLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKS 304
                                   RLSSYF+++TIGDLPMEL LPT+FV++TYWMA +K 
Sbjct: 419 LFQAIFTFPQERMMLEKERSSGMYRLSSYFMSRTIGDLPMELVLPTIFVIITYWMAGLKP 478

Query: 305 TTPWLIK-----------PQSIRLAIGAVLMKQKVASTITATIVLQYLL------QRLPV 347
                +             QS+ LA+GA +M QK A+ + + I+L +LL      Q +P 
Sbjct: 479 NAINFLHTLFALLFSVLVSQSLGLALGAAVMDQKSATILGSVIMLSFLLAGGYYVQNVPH 538

Query: 348 FTSWFEYASLTYYSYRLLLPSQYKAND--------TC---------YAGLSHQIICVAAL 390
           F +W +Y S+++Y+Y+LLL SQYK  D        TC           GL  QI+   AL
Sbjct: 539 FIAWIKYVSISHYTYKLLLGSQYKPGDIYPCSAKTTCLVGDFPAVQLVGLDKQILAAVAL 598

Query: 391 AVMLLGSRLAAYDALMGIG 409
           A+ML+G RL AY ALM IG
Sbjct: 599 AIMLVGYRLIAYIALMRIG 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586556|ref|XP_002533914.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223526124|gb|EEF28469.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 280/565 (49%), Gaps = 155/565 (27%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
           +ILKGI G+   GE+LA+LGPSG GKTTL T LGG+L        I YN  P S  +KR 
Sbjct: 67  VILKGITGMVFPGEMLAMLGPSGSGKTTLLTALGGKLGGKLGG-KITYNGKPFSNAMKRN 125

Query: 61  TGFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------ 90
           TGFV   +V Y HLTVTETLVF AL RLP                               
Sbjct: 126 TGFVTQDDVLYPHLTVTETLVFTALLRLPKELTKQEKIMHGEAVLTQLGLTRCKNSIIGG 185

Query: 91  -----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---------------- 123
                      KRVS  QELLINPSLLFLDEP SGLDST A++I                
Sbjct: 186 PFLRGISGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTVWEQAKGGRTIVM 245

Query: 124 ----------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167
                           LL SEGN L+ GKG  VM+YF  IGFEPS AMNP+D+LLDL+NG
Sbjct: 246 TIHQPSSRLFYMFDKVLLLSEGNPLYFGKGSEVMNYFSSIGFEPSVAMNPADYLLDLSNG 305

Query: 168 VVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQS 227
           + S     DQ  +K+TL++AYK NL+  LKA  Q V ++      +K+ + W+TTWWQQ 
Sbjct: 306 ISSYTDSRDQATVKQTLVTAYKDNLAGDLKAEVQAVDNNLQNSSNDKQFARWATTWWQQF 365

Query: 228 SELLKRNF--RQSSSFCGSKLLSQLT-------------SHRIHIINSHICY-------- 264
           + L +R    R+  SF G K+   L              SH    I     Y        
Sbjct: 366 TVLFRRGLKERKHESFAGIKVAQVLIVAFLSGLIWWRSGSHLQDQIGLLFFYSGFWGFFP 425

Query: 265 ----CFNF----------------RLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKS 304
                F F                RLSSYF+++T+ DLPMEL LP +FV++TYWMA +KS
Sbjct: 426 LFQAIFTFPQERRMLEKERSSGMYRLSSYFMSRTVSDLPMELVLPAIFVIITYWMAGLKS 485

Query: 305 TTPWLIK-----------PQSIRLAIGAVLMKQKVASTITATIVLQ------YLLQRLPV 347
           T    +             Q + LA+GA+++ Q+ A+T+ + ++L       Y +Q +P+
Sbjct: 486 TAVNFLNTLFVVLFNVLVAQGLGLALGAIVLDQRSATTVGSVLMLSFQLVSGYYVQNVPI 545

Query: 348 FTSWFEYASLTYYSYRLLLPSQYKANDT----------CYA-----------GLSHQIIC 386
           F  W +Y S++ Y+YRLLL SQYK  DT          C             G+  QII 
Sbjct: 546 FIGWIKYISISQYTYRLLLGSQYKQTDTYPCNTTASGVCLVGDYPAIKMVGLGVDGQIIA 605

Query: 387 VAALAVMLLGSRLAAYDALMGIGRI 411
             AL +ML+  R+ AY AL  IG +
Sbjct: 606 AVALLIMLVLFRVIAYLALTRIGVV 630

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143054|emb|CBI20349.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 207/507 (40%), Positives = 262/507 (51%), Gaps = 135/507 (26%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKGI G+   GE+LA+LGPSG GKTTL T LGGRL       +I YN  P S  +KR T
Sbjct: 60  ILKGITGIVLPGEMLAMLGPSGSGKTTLLTALGGRLGGRLNG-SITYNGKPFSNRMKRST 118

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLP-------------------------------- 89
           GFV   +V Y HLTVTETLVF AL RLP                                
Sbjct: 119 GFVTQDDVLYPHLTVTETLVFTALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNP 178

Query: 90  ---------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----------------- 123
                     KRVS  QE+LINPSLLFLDEP SGLDST A++I                 
Sbjct: 179 FLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMT 238

Query: 124 ---------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                          LL SEGN L+ GKG   M YF  IGF PS AMNPSDFLLDLANGV
Sbjct: 239 IHQPSSRLFYMFHKVLLLSEGNPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGV 298

Query: 169 VSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSS 228
           +S D  +D   +K+TL+ +Y+S + E LKA  +E+ +H   G  +K+   W+TTWWQQ S
Sbjct: 299 LSDDIHEDPTTIKQTLVLSYRSKIDEGLKAELREIDNHLQDGLEDKQLDRWATTWWQQCS 358

Query: 229 ELLKRNF--RQSSSFCGSKL--------LSQL---TSHRIHIINS--HICYCFNF----- 268
            L +R    R+  SF G K+        LS L    S   H+ +    + +C  F     
Sbjct: 359 VLFRRGVKERRHESFSGLKIGQVLVVGFLSGLLWWQSDSSHLQDQIGLLFFCSGFWGFFP 418

Query: 269 ------------------------RLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKS 304
                                   RLSSYF+++TIGDLPMEL LPT+FV++TYWMA +K 
Sbjct: 419 LFQAIFTFPQERMMLEKERSSGMYRLSSYFMSRTIGDLPMELVLPTIFVIITYWMAGLKP 478

Query: 305 TTPWLIK-----------PQSIRLAIGAVLMKQKVASTITATIVLQYLL------QRLPV 347
                +             QS+ LA+GA +M QK A+ + + I+L +LL      Q +P 
Sbjct: 479 NAINFLHTLFALLFSVLVSQSLGLALGAAVMDQKSATILGSVIMLSFLLAGGYYVQNVPH 538

Query: 348 FTSWFEYASLTYYSYRLLLPSQYKAND 374
           F +W +Y S+++Y+Y+LLL SQYK  D
Sbjct: 539 FIAWIKYVSISHYTYKLLLGSQYKPGD 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546890|ref|XP_003541854.1| PREDICTED: ABC transporter G family member 9-like [Glycine max]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 279/565 (49%), Gaps = 158/565 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKG++GV   GE+LA+LGPSG GKTTL T LGGRL  G+  G+I YN    S ++KR T
Sbjct: 35  ILKGVKGVVEPGEMLAMLGPSGSGKTTLLTALGGRLR-GKLYGSITYNGEAFSNSMKRNT 93

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLP-------------------------------- 89
           GFV   +V Y HLTVTETLVF AL RLP                                
Sbjct: 94  GFVTQDDVLYPHLTVTETLVFTALLRLPNTISKEEKVKKAKDVIDQLGLTKCKDSIVGSP 153

Query: 90  ---------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----------------- 123
                     KRVS  QE+LINPSLLFLDEP SGLDST A++I                 
Sbjct: 154 FLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELACGGRTIVMT 213

Query: 124 ---------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                          LL SEGNSL+ GKG   + YF  IG+ P+ AMNP+DFLLDLANG+
Sbjct: 214 IHQPSSRLYYLFHKVLLLSEGNSLYFGKGSEAIEYFSNIGYAPALAMNPADFLLDLANGI 273

Query: 169 VSGDPKDDQKALKETLISAYKSNLSEKLK-ASFQEVGDHSLIGP--GNKKNSNWSTTWWQ 225
            + +   D    K+ L+S  K N + +LK A+ + + D S        K +  W T+W Q
Sbjct: 274 YTDESNTDHAIDKQKLVSMCKINCAAQLKPAALEGINDSSKSQNRFQEKGSEKWPTSWSQ 333

Query: 226 QSSELLKRNF--RQSSSFCGSK--------LLSQLTSHRIHI--INSHICYCF------- 266
           Q + LL+R+   R+  SF   +        L+S L  ++  I  +   I   F       
Sbjct: 334 QFTVLLRRDIKERRHESFSALRVAQVFVVALISGLLWYKSDISHLQDQIGLLFFVSGFWG 393

Query: 267 -------------------------NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMAR 301
                                     +RLSSYF+++ + DLPMEL+LPT+F+++TYWMA 
Sbjct: 394 FFPLFQAIFTFPQELLMLEKERSSGMYRLSSYFMSRVVADLPMELSLPTIFILITYWMAG 453

Query: 302 IKSTTPWLIK-----------PQSIRLAIGAVLMKQKVASTITATIVLQYLL------QR 344
           +K      +             Q + LA+GA +M QK A+T+ + ++L +LL      Q 
Sbjct: 454 LKGKLLNFLYTLLTLLLHVLVSQGLGLALGATVMDQKAATTLASVLMLCFLLAGGFYVQH 513

Query: 345 LPVFTSWFEYASLTYYSYRLLLPSQYKANDT--CYAG------------------LSHQI 384
           +PVF SW +Y S+ YY+Y+L + SQY   +T  C  G                  L  Q+
Sbjct: 514 VPVFISWVKYISINYYNYQLFIASQYSDGETYPCSTGQCRVAEFPSIKQTGFHFNLQEQV 573

Query: 385 ICVAALAVMLLGSRLAAYDALMGIG 409
           +  +AL +M++G RL AY ALM IG
Sbjct: 574 MAASALVIMMIGYRLIAYVALMRIG 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546260|ref|XP_003541547.1| PREDICTED: ABC transporter G family member 14-like [Glycine max]

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 274/557 (49%), Gaps = 152/557 (27%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
           ++LKGI GV   GELL ILGPSG GKTTL   LGGRL+   TRG+I YN  PLS++VK+ 
Sbjct: 62  LVLKGISGVIFPGELLVILGPSGCGKTTLLAALGGRLNHSITRGSITYNGKPLSKSVKQN 121

Query: 61  TGFVAHSNVFYLHLTVTETLVFIALFRLP------------------------------- 89
            GFV+  +VFY HL+V+ETL+F AL RLP                               
Sbjct: 122 LGFVSQQDVFYPHLSVSETLIFSALLRLPNSVSKEEKILKAQAIMNELDLTHCKDTIMGG 181

Query: 90  ----------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLN------------- 126
                      KRVS  Q+LL NPSLL +DEP SGLDST A++I+L              
Sbjct: 182 PLLRGVSGGEWKRVSIGQQLLTNPSLLLVDEPTSGLDSTTARRIVLTLCELAKDGRTVIM 241

Query: 127 -------------------SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167
                              S+G SL+ GKG+ VM+YF  IG+ PS AMNP+DFLLDLANG
Sbjct: 242 TIHQPSSKLFYMFQKILLLSDGRSLYFGKGENVMNYFSSIGYTPSVAMNPTDFLLDLANG 301

Query: 168 VVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQS 227
           + S + ++D  A K+ L+SA++SNL+ ++K   Q   D       ++      TTWWQQ 
Sbjct: 302 IYSENLEEDTNATKQVLLSAFESNLASQVKMELQISRDSIHHNSEDEIFGQHCTTWWQQF 361

Query: 228 SELLKRNFRQSS---------------SFCGSKLLSQLTSHRIH----IINSHICYC--- 265
           + LL+R F++                 SF    L  Q  + ++H    ++  +  +C   
Sbjct: 362 TILLRRGFKERKYEQFSPHKICHVFVLSFFAGSLWWQSGADQMHDQVALLFYYTQFCGFF 421

Query: 266 ----------------------FNFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIK 303
                                 + +RLSSY +A  + DLP++L LPT+ V VTYWM  +K
Sbjct: 422 PMVQSIFTFPRDREMIIKERSFYMYRLSSYIIASNLDDLPLQLALPTLLVTVTYWMGGLK 481

Query: 304 STTPWLIK-----------PQSIRLAIGAVLM-KQKVASTITATIVLQYLL------QRL 345
           +      +            Q   LAIGA+L+  QKVA T+   ++  +LL      +  
Sbjct: 482 AKASIFFRTLAVALLYSLVSQGFGLAIGALLINNQKVAITVGTVVMTLFLLVNGFFVRNT 541

Query: 346 PVFTSWFEYASLTYYSYRLLLPSQYKAND--------TCYA---------GLSHQIICVA 388
           P F SW +Y S  YYSY+LLL SQ+   D        TC A         G+  Q + VA
Sbjct: 542 PAFVSWIKYLSHGYYSYKLLLGSQFNGYDTYHCGQNVTCSAVNYPTIKHVGIDKQGLSVA 601

Query: 389 ALAVMLLGSRLAAYDAL 405
           AL  ML+G RL AY AL
Sbjct: 602 ALVAMLVGYRLIAYFAL 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432932|ref|XP_004134252.1| PREDICTED: ABC transporter G family member 9-like [Cucumis sativus] gi|449478319|ref|XP_004155283.1| PREDICTED: ABC transporter G family member 9-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 203/566 (35%), Positives = 267/566 (47%), Gaps = 157/566 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKG+ G+    E+L ILGPSG GK+TL T L GRLS G   G I YN  P S  +K + 
Sbjct: 61  ILKGLSGLVRPAEMLVILGPSGSGKSTLLTALSGRLS-GRLDGAITYNGKPFSSEMKHRI 119

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLP-------------------------------- 89
           GFV   ++ + HLT+ ETLVF AL RLP                                
Sbjct: 120 GFVTQDDILHPHLTIAETLVFTALLRLPNTLTKQEKLAEVEATISQLGLTRCKNTIVGSP 179

Query: 90  ---------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---------------- 124
                     KRV   QE+LINPSLLFLDEP SGLDST A+ I+                
Sbjct: 180 ILRGVSGGERKRVCIGQEMLINPSLLFLDEPTSGLDSTTAQTIVTMMGEFAKGGRAVIMT 239

Query: 125 ----------------LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                           L  EGN+++ GKG  VM YF+ IG+ PS  MNPSDFLLDLANG+
Sbjct: 240 VHQPSSRLFYLFHKLLLLLEGNAVYYGKGSEVMDYFLSIGYSPSLPMNPSDFLLDLANGL 299

Query: 169 VSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSN----WSTTWW 224
              DP +D   +K+ L+S+YK+N+++ LK   QE  +      G+  + +    W TTWW
Sbjct: 300 SMNDPNEDPTIVKQKLVSSYKNNIADNLKREVQESDEEHYYWCGDGSHEDNFEIWPTTWW 359

Query: 225 QQSSELLKRNF--RQSSSFCGSKLLSQLT-----------SHRIHI---------INSHI 262
           QQ + L +R    R+  SF   K +  L            S   H+         I S  
Sbjct: 360 QQVAVLWRREIKERRYESFSSIKFVQVLVIAFLAGFLWWQSDDSHLQDKLGLFYSIQSFW 419

Query: 263 CY--------CFN--------------FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMA 300
            +         F+              ++LSSYF++KT+ DLPMEL LPT+F+++ YWM 
Sbjct: 420 TFLPTLKAISTFSNEQKILEKERSSAMYKLSSYFISKTVNDLPMELALPTLFILIVYWMT 479

Query: 301 RIKSTTPWLIKP-----------QSIRLAIGAVLMKQKVASTITATIVLQYLL------Q 343
            +K T P                Q    A+GAVLM Q VAS     + L +LL      Q
Sbjct: 480 GLKPTLPNFFATLFTLLLNVLVCQGFGFALGAVLMDQTVASISGTVLALAFLLTSGFFVQ 539

Query: 344 RLPVFTSWFEYASLTYYSYRLLLPSQYKANDT---------CYA---------GLSHQII 385
            +P F +W +Y S  ++SY+L+L SQ+K +DT         C           GL  + +
Sbjct: 540 HVPKFIAWIKYLSSGHFSYKLMLISQFKGDDTYPCSNIGGVCKVGEFPVIKQIGLEGKAM 599

Query: 386 CVAALAVMLLGSRLAAYDALMGIGRI 411
            V AL VM +G R  AY ALM IG I
Sbjct: 600 TVLALVVMFVGYRFIAYVALMRIGVI 625

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514780|ref|XP_003526081.1| PREDICTED: ABC transporter G family member 9-like [Glycine max]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 264/564 (46%), Gaps = 156/564 (27%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
           +IL G+ G++  GE+LA+LGPSG GKTTL   LGGRL  G+  G+I YN    S  +KR 
Sbjct: 57  VILNGVTGMAQSGEILAMLGPSGSGKTTLLAALGGRLG-GKLHGSITYNGKAFSNVMKRN 115

Query: 61  TGFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------ 90
           TGFV   ++ Y HLTV ET+VF AL RLP                               
Sbjct: 116 TGFVTQDDILYPHLTVVETVVFTALLRLPKSFTTKEKIVHAKSVMAQLGLTKCKDSIIGG 175

Query: 91  -----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---------------- 123
                      KRVS  QE+LINPSLLFLDEP SGLDSTIAK+I                
Sbjct: 176 PLLRGISGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTIAKRIVSTLWELANGGRTVVM 235

Query: 124 ----------------LLNSEGNSLHVGKGDGVMSYFVGIGFEP-SAAMNPSDFLLDLAN 166
                           LL SEGN L+ GKG   M YF  IG+ P + AMNPSDFLLDL+N
Sbjct: 236 TIHQPSSRMYCMFHKVLLLSEGNLLYFGKGSKAMEYFSSIGYAPMTMAMNPSDFLLDLSN 295

Query: 167 GVVSGDPKDDQKALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNS--NWSTTWW 224
           GV +    +D    K  LISAY++    KL+    E+ ++       + N    W T+W 
Sbjct: 296 GVYTDQSNEDHALNKRKLISAYRNYFDAKLQPVLHEITEYDKCKGRIEDNGFGEWPTSWP 355

Query: 225 QQSSELLKRNF--RQSSSFCGSKLLSQLT----------SHRIHIINSHICYCF------ 266
           QQ   LLKR+   R+ +SF G ++   L              I  +   I   F      
Sbjct: 356 QQFLVLLKRDVKERKYASFSGMRICQVLMVALIAGLLWYKSDISHLQDQIGILFFISSFW 415

Query: 267 --------------------------NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMA 300
                                      +RLSSYF+++ +GDLPMEL LPT+F+ + YWMA
Sbjct: 416 SSMALFQAIFTFPQELTILKKERSSGMYRLSSYFMSRMVGDLPMELGLPTIFLAIVYWMA 475

Query: 301 RIKSTTPWLIK-----------PQSIRLAIGAVLMKQKVASTITATIVLQYLL------Q 343
            +K      I             Q + LAI A++M+QK AST+ + I+   +L      Q
Sbjct: 476 GLKPNVANFIYTMLSVFLNVLVSQGLGLAISAIVMEQKSASTLASVIMPTSILLGGYYNQ 535

Query: 344 RLPVFTSWFEYASLTYYSYRLLLPSQYKANDT--CYAG----------------LSHQII 385
            +P F +W +Y S  YY Y L++ SQY  +DT  C  G                L  +I 
Sbjct: 536 HVPKFIAWLKYFSTHYYVYHLVIGSQYGTSDTYPCSNGQCLVAEHPVIKQVGLHLQGKIT 595

Query: 386 CVAALAVMLLGSRLAAYDALMGIG 409
              AL +ML+G RL AY ALM IG
Sbjct: 596 AALALFIMLIGFRLVAYLALMRIG 619

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432930|ref|XP_004134251.1| PREDICTED: ABC transporter G family member 9-like [Cucumis sativus] gi|449530578|ref|XP_004172271.1| PREDICTED: ABC transporter G family member 9-like [Cucumis sativus]

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 273/567 (48%), Gaps = 159/567 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKGI GV   GE+LA++GPSG GKTTL T LGGRL  G   G I YN NP S  +KR  
Sbjct: 46  ILKGINGVVRPGEMLAMMGPSGSGKTTLLTALGGRLGGGRLTGTISYNKNPFSNKMKRNI 105

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------- 90
           GFV   ++   HLTV ETLVF AL RLP                                
Sbjct: 106 GFVTQDDILLPHLTVVETLVFTALLRLPKELTTQQKVGQAEVVISQLGLSKCKNSVVGSQ 165

Query: 91  ----------KRVSRAQELLINPSLLFLDEPASGLDSTIAK------------------- 121
                     KRVS AQE+LINPSLLFLDEP SGLDST A+                   
Sbjct: 166 MVRGVSGGERKRVSIAQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWEVANNGGRTVVM 225

Query: 122 --------------QILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG 167
                         +ILL SEGN+++ GKG   M YF  +G+ PS  MNPSDFLLDL+NG
Sbjct: 226 TIHQPSSRLFYMFHKILLLSEGNTMYFGKGSEAMDYFSSLGYSPSVPMNPSDFLLDLSNG 285

Query: 168 VVSGDPKDDQKALKETLISAYKSN-LSEKLKASFQEVGDHSLIGPGNKKNS--NWSTTWW 224
           +   + +++   +KE LIS YK+N ++EKL    Q+  +  L+  G +  S   WS TW 
Sbjct: 286 LSMNEAEEEAGLVKEKLISCYKNNAIAEKLLLELQDSDEQHLVEEGAEDKSFGRWSATWC 345

Query: 225 QQSSELLKRNF--RQSSSFCGSKLLSQLT-----------SHRIHIINSHICYCFN---- 267
           QQ + LL+R    R+  SF   K+   L            S   H+ +    + F+    
Sbjct: 346 QQFTVLLRRGIKERKHDSFSALKIGQVLAVSLICGLLWWQSDDSHLQDKIGLFYFSSSFW 405

Query: 268 ---------------------------FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMA 300
                                      +RLSSYFV++T  DLPMEL LPTVFVV+ Y MA
Sbjct: 406 GFFPLLQAIGTFPKERMILEKERSSGMYRLSSYFVSRTTTDLPMELVLPTVFVVIIYVMA 465

Query: 301 RIKSTTPWLIK-----------PQSIRLAIGAVLMKQKVASTITATIVLQYLL------Q 343
            +K T                  Q   LA+GA+++ Q  A+T  + I+L +LL      Q
Sbjct: 466 GLKRTVASFFATLFSLLLSVLVAQGFGLAMGALVLDQTSATTFASVIMLCFLLTSGYFVQ 525

Query: 344 RLPVFTSWFEYASLTYYSYRLLLPSQYKANDT--C-------------------YAGLSH 382
            +P F +W +Y S+  YSY+LLL SQYKA+DT  C                     GL  
Sbjct: 526 HVPKFIAWTKYISIGTYSYKLLLISQYKASDTYPCPSNDNGGRACEVGEFPPIKQVGLDG 585

Query: 383 QIICVAALAVMLLGSRLAAYDALMGIG 409
           ++  V+A+  ML+G RL AY ALM IG
Sbjct: 586 KLFAVSAMVAMLVGYRLVAYIALMRIG 612

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817092|emb|CAN70956.1| hypothetical protein VITISV_028138 [Vitis vinifera]

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 271/570 (47%), Gaps = 167/570 (29%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL GI G+   GE+LA+LGPSG GKTTL T LGGRL+ G+  G I YN  P S  VKR+T
Sbjct: 103 ILNGITGMVCPGEILAMLGPSGSGKTTLLTALGGRLN-GKLSGKITYNGQPFSGAVKRRT 161

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------- 90
           GFVA  +V Y HLTVTETL+F AL RLP                                
Sbjct: 162 GFVAQDDVLYPHLTVTETLLFTALLRLPKSLARNEKAQHVERVISELGLTRCRNSMIGGP 221

Query: 91  ----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---------------- 124
                     KRVS  QE+LINPSLL LDEP SGLDST A++IL                
Sbjct: 222 LFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLASGGRTVVTT 281

Query: 125 ----------------LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                           L SEG  ++ G     M YF  +GF     +NP+D LLDLANG+
Sbjct: 282 IHQPSSRLYHMFDKVILLSEGCPIYNGPASTAMEYFSSVGFSTCVTVNPADLLLDLANGI 341

Query: 169 V---------SGDPKDDQKALKETLISAYKSNLSEKLKASF--QEVGDHSLIGPGNKKNS 217
                     S + + +QK+++E LISAY+ N+S +LKA     +V +++    G  +N+
Sbjct: 342 SPDSKQAAEQSENMEQEQKSVREALISAYEKNISTRLKAELCSVDVNNYNYTKDGRARNN 401

Query: 218 ----NWSTTWWQQSSELLKRNFRQSSSFCGSKL-LSQLTSHRI-------HIINSHI--- 262
                W T+WW Q   LL+R  R+      ++L + Q+ S  +       H   SHI   
Sbjct: 402 FKADQWCTSWWHQFMVLLQRGLRERRYEAFNRLRIFQVISVAVLGGLLWWHTPTSHIEDR 461

Query: 263 ---CYCFN------------------------------FRLSSYFVAKTIGDLPMELTLP 289
               + F+                              +RLSSYF+A+T GDLP+EL LP
Sbjct: 462 IALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTFGDLPLELALP 521

Query: 290 TVFVVVTYWMARIKSTTPWLI-----------KPQSIRLAIGAVLMKQKVASTITATIVL 338
           T FV++ YWM  +K      I             QS+ LAIGA+LM  K A+T+ +   L
Sbjct: 522 TAFVIIIYWMGGLKPDPITFILSLLVVLYNVLVSQSLGLAIGAILMDIKQATTLASVTTL 581

Query: 339 QYLL------QRLPVFTSWFEYASLTYYSYRLLLPSQYKAND--TC-------------- 376
            +L+      Q++P F  W +Y S +YY Y+LLL  QY  +D   C              
Sbjct: 582 VFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYSEDDYYECSKGVFCRVVDFPAV 641

Query: 377 -YAGLSHQIICVAALAVMLLGSRLAAYDAL 405
              GL+H  I V  +A+ML+G RL AY AL
Sbjct: 642 KSVGLNHLWIDVCIMALMLVGYRLVAYLAL 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2016089	662	ABCG25 "ATP-binding casette G2	0.251	0.157	0.438	4.1e-39
TAIR|locus:2144133	751	ABCG22 "ATP-binding cassette G	0.232	0.127	0.494	5.3e-39
TAIR|locus:2028656	648	ABCG14 "ATP-binding cassette G	0.348	0.222	0.463	4.1e-33
TAIR|locus:2090009	685	ABCG26 "ATP-binding cassette G	0.230	0.138	0.505	2.5e-30
FB|FBgn0020445	1017	E23 "Early gene at 23" [Drosop	0.230	0.093	0.397	1.7e-24
TAIR|locus:2173184	727	ABCG6 "ATP-binding cassette G6	0.237	0.134	0.4	5.3e-19
TAIR|locus:2049806	755	ABCG2 "ATP-binding cassette G2	0.242	0.132	0.367	9.1e-19
ZFIN|ZDB-GENE-050517-37	634	abcg2c "ATP-binding cassette,	0.242	0.157	0.320	1.7e-18
TAIR|locus:2100641	725	ABCG19 "ATP-binding cassette G	0.234	0.133	0.37	2.2e-18
TAIR|locus:2083946	739	ABCG20 "ATP-binding cassette G	0.242	0.135	0.377	2e-17

TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 4.1e-39, Sum P(3) = 4.1e-39
 Identities = 46/105 (43%), Positives = 67/105 (63%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
             IL G+ G+ S GE +A+LGPSG GK+TL   + GRL      G I  N+  +++   ++T
Sbjct:    83 ILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRT 142

Query:    62 GFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLL 106
             GFVA  ++ Y HLTV ETLVF+AL RLP + ++R  +L    S++
Sbjct:   143 GFVAQDDLLYPHLTVRETLVFVALLRLP-RSLTRDVKLRAAESVI 186

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 5.3e-39, Sum P(4) = 5.3e-39
 Identities = 48/97 (49%), Positives = 65/97 (67%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
             IL GI G  + GE+LA++GPSG GKTTL + L GR+S   T G++ YN+ P S+ +K K 
Sbjct:   179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238

Query:    62 GFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQE 98
             GFV   +V + HLTV ETL + A  RLP K ++R Q+
Sbjct:   239 GFVTQDDVLFPHLTVKETLTYAARLRLP-KTLTREQK 274

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010148 "transpiration" evidence=IMP

TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 4.1e-33, Sum P(3) = 4.1e-33
 Identities = 77/166 (46%), Positives = 91/166 (54%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
             IL GI G+   GE LA+LGPSG GKTTL + LGGRLS   + G + YN  P S  +KR+T
Sbjct:    81 ILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKTFS-GKVMYNGQPFSGCIKRRT 139

Query:    62 GFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAK 121
             GFVA  +V Y HLTV ETL F AL RLP              S L  DE A  +D  IA 
Sbjct:   140 GFVAQDDVLYPHLTVWETLFFTALLRLP--------------SSLTRDEKAEHVDRVIA- 184

Query:   122 QILLNSEGNSLHVG---KG-DGVMSYFVGIGFEPSAAMNPSDFLLD 163
             ++ LN   NS+  G   +G  G     V IG E    +NPS  LLD
Sbjct:   185 ELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQE--MLINPSLLLLD 228

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
 Identities = 49/97 (50%), Positives = 63/97 (64%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
             ILKGI G +  GE+LA++GPSG GKTTL   +GGRL T   +G + YN+ P S +VKR+ 
Sbjct:   106 ILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRL-TDNVKGKLTYNDIPYSPSVKRRI 164

Query:    62 GFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQE 98
             GFV   +V    LTV ETL F A  RLP   +S+ Q+
Sbjct:   165 GFVTQDDVLLPQLTVEETLAFAAFLRLP-SSMSKEQK 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009555 "pollen development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
 Identities = 39/98 (39%), Positives = 60/98 (61%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
             IL  + G  S  E+LAI+GPSG GKTTL   L G+       G++  N  PL++  +R+ 
Sbjct:   367 ILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQRHIDS--GSVFLNREPLTKKWRRRI 424

Query:    62 GFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQEL 99
             G+V    +F+  LT+ ET+V+ AL RLP + + RA+++
Sbjct:   425 GYVLQEEIFFPQLTLRETVVYTALLRLP-ESMPRAEKM 461

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=NAS

GO:0005215 "transporter activity" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IDA;IMP

TAIR|locus:2173184 ABCG6 "ATP-binding cassette G6" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 5.3e-19, Sum P(4) = 5.3e-19
 Identities = 40/100 (40%), Positives = 62/100 (62%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-SRTVKRK 60
             +L GI G +  GE+LA+LG SG GK+TL   L  R++ G  +GN+  N   L S+  K  
Sbjct:   108 LLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGEVLNSKMQKAI 167

Query:    61 TGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELL 100
             + +V   ++ +  LTV ETL+F A FRLP + +S++++ L
Sbjct:   168 SAYVMQDDLLFPMLTVEETLMFAAEFRLP-RSLSKSKKSL 206

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2049806 ABCG2 "ATP-binding cassette G2" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 9.1e-19, Sum P(4) = 9.1e-19
 Identities = 39/106 (36%), Positives = 62/106 (58%)

Query:     1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
             ++L GI G +  GE++A+LG SG GK+TL   L  R++    RG+I  N   L  ++++ 
Sbjct:   132 ILLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKV 191

Query:    61 -TGFVAHSNVFYLHLTVTETLVFIALFRLPI-----KRVSRAQELL 100
              + +V   ++ +  LTV ETL+F A FRLP      K+ +R Q L+
Sbjct:   192 ISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKKKKKARVQALI 237

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

ZFIN|ZDB-GENE-050517-37 abcg2c "ATP-binding cassette, sub-family G (WHITE), member 2c" [Danio rerio (taxid:7955)]

 Score = 126 (49.4 bits), Expect = 1.7e-18, Sum P(5) = 1.7e-18
 Identities = 33/103 (32%), Positives = 57/103 (55%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLSRTVKRK 60
             ILK + G+ + G + AI+GP+G GKT+L   + GR    G   G +  +N  ++  ++  
Sbjct:    54 ILKDVSGIMNPG-MNAIMGPTGSGKTSLLDVIAGRKDPKGLKSGQVLVDNTIVTSDLRLC 112

Query:    61 TGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRA-QELLIN 102
             + +V  +++    LTV E L F A  RL +K  S + +E+ +N
Sbjct:   113 SAYVVQNDILMGTLTVRENLAFSANLRLSLKEYSSSDKEMRVN 155

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2100641 ABCG19 "ATP-binding cassette G19" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
 Identities = 37/100 (37%), Positives = 64/100 (64%)

Query:     2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL--SRTVKR 59
             +L  + G +S G++LA+LG SG GK+TL   L GR++ G  RG++  N   +  SR +K 
Sbjct:    99 LLDDVSGEASDGDILAVLGASGAGKSTLIDALAGRVAEGSLRGSVTLNGEKVLQSRLLKV 158

Query:    60 KTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQEL 99
              + +V   ++ +  LTV ETL+F + FRLP + +S+++++
Sbjct:   159 ISAYVMQDDLLFPMLTVKETLMFASEFRLP-RSLSKSKKM 197

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005775 "vacuolar lumen" evidence=IDA

GO:0007034 "vacuolar transport" evidence=IMP

GO:0042891 "antibiotic transport" evidence=TAS

TAIR|locus:2083946 ABCG20 "ATP-binding cassette G20" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.0e-17, Sum P(4) = 2.0e-17
 Identities = 40/106 (37%), Positives = 61/106 (57%)

Query:     1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
             ++L GI G +  GE++A+LG SG GK+TL   L  R+S    RG+I  N   L  ++ + 
Sbjct:   125 VLLNGISGEAREGEMMAVLGASGSGKSTLIDALANRISKESLRGDITLNGEVLESSLHKV 184

Query:    61 -TGFVAHSNVFYLHLTVTETLVFIALFRLPI-----KRVSRAQELL 100
              + +V   ++ +  LTV ETL+F A FRLP      K+ +R Q L+
Sbjct:   185 ISAYVMQDDLLFPMLTVEETLMFSAEFRLPSSLSKKKKKARVQALI 230

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027624001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (551 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-59
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-40
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	8e-32
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	3e-25
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-24
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-20
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-16
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-16
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-14
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	1e-14
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-14
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-12
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	4e-12
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	5e-12
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	9e-12
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-11
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-11
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-11
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	6e-11
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	7e-11
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	8e-11
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-10
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-10
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-10
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	8e-10
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-09
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-09
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-09
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-09
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	4e-09
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	6e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	6e-09
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	8e-09
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	9e-09
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-08
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-08
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-08
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-08
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-08
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-08
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	4e-08
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	4e-08
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	5e-08
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	5e-08
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	5e-08
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	5e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	6e-08
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	6e-08
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	7e-08
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	8e-08
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	9e-08
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-07
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	1e-07
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-07
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	2e-07
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	3e-07
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	3e-07
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	4e-07
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	4e-07
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	5e-07
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	5e-07
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	5e-07
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	5e-07
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	5e-07
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	6e-07
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	6e-07
COG4988	559	COG4988, CydD, ABC-type transport system involved	6e-07
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	6e-07
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	7e-07
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	9e-07
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	1e-06
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-06
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-06
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-06
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-06
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-06
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	3e-06
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	3e-06
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	3e-06
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	4e-06
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	5e-06
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	6e-06
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	7e-06
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	7e-06
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	8e-06
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-05
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	1e-05
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	1e-05
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	1e-05
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-05
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-05
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-05
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-05
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-05
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-05
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-05
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-05
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	4e-05
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	4e-05
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-05
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-05
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	5e-05
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	6e-05
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	6e-05
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	7e-05
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	8e-05
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	8e-05
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	8e-05
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	8e-05
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	1e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	1e-04
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-04
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-04
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-04
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-04
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-04
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	4e-04
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-04
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	4e-04
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	4e-04
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	6e-04
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	6e-04
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	7e-04
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	0.001
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	0.001
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	0.001
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	0.001
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	0.002
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	0.002
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	0.002
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	0.002
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	0.002
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	0.002
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	0.002
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.003
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	0.003
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	0.003
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	0.003
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	0.003
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	0.003
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	0.003
COG5265	497	COG5265, ATM1, ABC-type transport system involved	0.004

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  204 bits (521), Expect = 2e-59
 Identities = 171/583 (29%), Positives = 252/583 (43%), Gaps = 177/583 (30%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL G+ G++S GE+LA+LGPSG GK+TL   L GR+      G I  NN   ++ + ++T
Sbjct: 83  ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------- 90
           GFV   ++ Y HLTV ETLVF +L RLP                                
Sbjct: 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNS 202

Query: 91  ----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLN-------------- 126
                     KRVS A E+LINPSLL LDEP SGLD+T A +++L               
Sbjct: 203 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262

Query: 127 ------------------SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV 168
                             SEG  L  GKG   M+YF  +GF PS  MNP+DFLLDLANGV
Sbjct: 263 MHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGV 322

Query: 169 --VSGDPKDDQKALKETLISAYKSNLSEKLKASFQE----VGDHSLIGPGNKKNSNWS-- 220
               G  + ++  +K++L+++Y + L+ K+KA+ +       +   +G  + K    S  
Sbjct: 323 CQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDR 382

Query: 221 ---TTWWQQSSELLKRNF--RQSSSFCGSKLLSQLTSHRIHIINSHICYCFNFRLSS--- 272
              +TW+ Q S LL+R+   R+  SF   ++   + +    ++   + +  +FR      
Sbjct: 383 ISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAA---ALLAGLMWWHSDFRDVQDRL 439

Query: 273 ---YFVAKTIGDLPME---LTLPT------------VFVVVTYWMARIKSTTP------- 307
              +F++   G  P        P             ++ + +Y+MARI    P       
Sbjct: 440 GLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPT 499

Query: 308 -------WL--IKPQ------SIRLAIGAVLMKQ-------------KVASTITATIVLQ 339
                  W+  +KP+      ++ + +G VL+ Q             K ASTI    +L 
Sbjct: 500 IFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLA 559

Query: 340 YLL------QRLPVFTSWFEYASLTYYSYRLLLPSQYKAND-----------------TC 376
           ++L       +LP   +W +Y S T+YSYRLL+  QY                     +C
Sbjct: 560 FVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC 619

Query: 377 ------YAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRISH 413
                  AG       V+ L  M +G RL AY AL    RI H
Sbjct: 620 KFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALR---RIKH 659

Length = 659

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  150 bits (381), Expect = 4e-40
 Identities = 132/574 (22%), Positives = 212/574 (36%), Gaps = 174/574 (30%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR-GNIDYNNNPL-SRTVKR 59
           +LK + GV+  GELLA++G SG GKTTL   L  R   G    G++  N  P+ ++ ++ 
Sbjct: 40  LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99

Query: 60  KTGFVAHSNVFYLHLTVTETLVFIALFRLP------------------------------ 89
            + +V   ++F   LTV E L+F A  R+P                              
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159

Query: 90  ------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA----------------- 120
                        KR++ A ELL +P LLF DEP SGLDS +A                 
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219

Query: 121 ---------------KQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA 165
                           +I+L +EG   ++G  D  + +F  +G       NP+DF +   
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQ-- 277

Query: 166 NGVVSGDPKDDQKALK--ETLISAY-KSNLS-EKLKASFQEVGDHSLIGPG--NKKNSNW 219
             V++  P  + ++ +  E +  ++  S++  + L  +    G    +     N +   +
Sbjct: 278 --VLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGY 335

Query: 220 STTWWQQ--------------SSELLKRNFRQ---SSSFCGSKLLSQ-LTSHRIHIINSH 261
           + +WW Q                 LLK    Q   ++   G   L Q LT   +  IN  
Sbjct: 336 NASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGA 395

Query: 262 ICYCFN-----------------------------FRLSSYFVAKTIGDLPMELTLPTVF 292
           +                                  +R+S+YF+AKTI +LP+ + LP +F
Sbjct: 396 LFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALF 455

Query: 293 VVVTYWMARIKSTTPWLIK-----------PQSIRLAIGAVLMKQKVASTITATIVLQYL 341
             +TYWM  ++S     +              S    I        +A T+    V+ +L
Sbjct: 456 TSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFL 515

Query: 342 L--------QRLPVFTSWFEYASLTYYSYRLLLPSQYK---------ANDTCYAGLSHQI 384
           L          +PV+  W  Y S   Y    LL +Q+          AN T     S ++
Sbjct: 516 LFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEV 575

Query: 385 I-------------CVAALAVMLLGSRLAAYDAL 405
           I              +  L +++   RL AY AL
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFAL 609

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  119 bits (300), Expect = 8e-32
 Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 5/128 (3%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRK 60
           +LK + G +  GEL AI+GPSG GK+TL   L GR +     G +  N  PL  R+ ++ 
Sbjct: 24  LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83

Query: 61  TGFVAHSNVFYLHLTVTETLVFIALFR-LP---IKRVSRAQELLINPSLLFLDEPASGLD 116
            G+V   ++ +  LTV ETL+F A  R L     KRVS A EL+ NPSLLFLDEP SGLD
Sbjct: 84  IGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143

Query: 117 STIAKQIL 124
           S+ A Q++
Sbjct: 144 SSSALQVM 151

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  101 bits (253), Expect = 3e-25
 Identities = 56/124 (45%), Positives = 69/124 (55%), Gaps = 4/124 (3%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRK 60
            +L  I G    G L A++G SG GKTTL   L GR + G   G I  N  PL +  +R 
Sbjct: 21  QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRS 80

Query: 61  TGFVAHSNVFYLHLTVTETLVFIALFR-LPI---KRVSRAQELLINPSLLFLDEPASGLD 116
           TG+V   +V   +LTV E L F AL R L +   KR++   EL   PS+LFLDEP SGLD
Sbjct: 81  TGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140

Query: 117 STIA 120
           S  A
Sbjct: 141 SQAA 144

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  100 bits (250), Expect = 2e-24
 Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 39/163 (23%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL-STGETRGNIDYNNNPLSR-TVKR 59
           IL  +      G+++AILG SG GKTTL   + GR+   G T G I +N  P      ++
Sbjct: 22  ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81

Query: 60  KTGFVAHSNVFYLHLTVTETLVFIALFRLPI----------------------------- 90
              +V   ++    LTV ETL + A+ RLP                              
Sbjct: 82  CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141

Query: 91  --------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILL 125
                   +RVS A +LL +P +L LDEP SGLDS  A  ++ 
Sbjct: 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 49/160 (30%), Positives = 61/160 (38%), Gaps = 43/160 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL---SRTVKRKTGFVAHSNV 69
           GE+  +LGP+G GKTTL   L G L    T G I      +      V+R+ G+V     
Sbjct: 31  GEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88

Query: 70  FYLHLTVTETLVFIALFRLPI---------------------------------KRVSRA 96
            Y  LTV E L F A                                       +R+S A
Sbjct: 89  LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIA 148

Query: 97  QELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNS 131
             LL +P LL LDEP SGLD    ++I      L  EG  
Sbjct: 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188

Length = 293

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 53/165 (32%), Positives = 69/165 (41%), Gaps = 42/165 (25%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE-TRGNIDYNNNPLSRTVKR 59
           +IL  + G    G L A++G SG GKTTL   L  R++TG  T G+   N  PL  + +R
Sbjct: 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836

Query: 60  KTGFVAHSNVFYLHLTVTETLVFIALFRLPI----------------------------- 90
             G+V   ++     TV E+L F A  R P                              
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896

Query: 91  -----------KRVSRAQELLINP-SLLFLDEPASGLDSTIAKQI 123
                      KR++   EL+  P  LLFLDEP SGLDS  A  I
Sbjct: 897 VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSI 941

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 13/125 (10%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT---VKRKTGFVAHSNV 69
           GE+  +LGP+G GKTTL   + G L      G I      + +    VKR+ G++     
Sbjct: 26  GEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS 83

Query: 70  FYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----- 124
            Y +LTV E L      +   +R++ AQ LL +P LL LDEP SGLD    ++       
Sbjct: 84  LYENLTVRENLKLSGGMK---QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140

Query: 125 LNSEG 129
           L  EG
Sbjct: 141 LKKEG 145

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL------SRTVKRKTGFVAH 66
           GE++A+LGPSG GK+TL   + G        G+I  +   L         ++R+ G V  
Sbjct: 26  GEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRRIGMVFQ 83

Query: 67  SNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
               + HLTV E +    L     +RV+ A+ L ++P +L LDEP S LD    +++ 
Sbjct: 84  DFALFPHLTVLENIAL-GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL-STGETRGNIDYNNNPLSRTVKRK 60
           ILK   GV   GE++ +LG  G G +TL   L  R        G+I YN  P     ++ 
Sbjct: 22  ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81

Query: 61  TG---FVAHSNVFYLHLTVTETLVFIALFRL----------PIKRVSRAQELLINPSLLF 107
            G   +V+  +V +  LTV ETL F    +             KRVS A+ L+   S+L 
Sbjct: 82  PGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLC 141

Query: 108 LDEPASGLDSTIAKQIL 124
            D    GLDS+ A +IL
Sbjct: 142 WDNSTRGLDSSTALEIL 158

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 43/177 (24%)

Query: 2    ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRK 60
            +L+ + G    G L A++G SG GKTTL   L GR + G   G+I  +  P  + T  R 
Sbjct: 895  LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954

Query: 61   TGFVAHSNVFYLHLTVTETLVFIALFRLPI------------------------------ 90
            +G+   +++    +TV E+L++ A  RLP                               
Sbjct: 955  SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014

Query: 91   -----------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGK 136
                       KR++ A EL+ NPS++F+DEP SGLD+  A  I++ +  N++  G+
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRTVRNTVDTGR 1070

Length = 1470

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 45/141 (31%), Positives = 58/141 (41%), Gaps = 41/141 (29%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGNIDYNNNPLSRTV--KRKTGFVAHSN 68
           GE LA+LGPSG GKTTL   + G  R  +GE    I  +   ++     +R  G V    
Sbjct: 26  GEFLALLGPSGCGKTTLLRLIAGLERPDSGE----ILIDGRDVTGVPPERRNIGMVFQDY 81

Query: 69  VFYLHLTVTETLVF-------------------IALFRLPI--------------KRVSR 95
             + HLTV E + F                   + L  L                +RV+ 
Sbjct: 82  ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVAL 141

Query: 96  AQELLINPSLLFLDEPASGLD 116
           A+ L   PSLL LDEP S LD
Sbjct: 142 ARALAREPSLLLLDEPLSALD 162

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 18/113 (15%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE++A++GP+G GK+TL   + G L    T G I  +   +++    +        + Y+
Sbjct: 25  GEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEE----LRRRIGYV 78

Query: 73  H-LTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
             L+  +            +RV+ A+ LL+NP LL LDEP SGLD    +++L
Sbjct: 79  PQLSGGQR-----------QRVALARALLLNPDLLLLDEPTSGLDPASRERLL 120

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 44/153 (28%), Positives = 53/153 (34%), Gaps = 42/153 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK--------RKTGFV 64
            E+  I G SG GK+TL   + G        G I  N   L  + K        RK G V
Sbjct: 23  EEVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80

Query: 65  AHSNVFYLHLTVTETLVFIA------------------------LFRLPIK-------RV 93
                 + HL V E L F                          L R P +       RV
Sbjct: 81  FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRV 140

Query: 94  SRAQELLINPSLLFLDEPASGLDSTIAKQILLN 126
           + A+ L   P LL LDEP S LD    +  LL 
Sbjct: 141 ALARALAAQPELLLLDEPFSALD-RALRLQLLP 172

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 70/362 (19%), Positives = 110/362 (30%), Gaps = 120/362 (33%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL--STGETRGNIDYNNNPLSRTVKR 59
           ILK + G+   GEL  +LG  G G +TL  T+            G I Y+        K 
Sbjct: 76  ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135

Query: 60  KTGFVAHS---NVFYLHLTVTETLVFIALFRLPI-------------------------- 90
             G V ++   +V + HLTV ETL F A  + P                           
Sbjct: 136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS 195

Query: 91  --------------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQ-------- 122
                               KRVS A+  L    +   D    GLDS  A +        
Sbjct: 196 HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTS 255

Query: 123 -------------------------ILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNP 157
                                    +++  EG  ++ G  D    YF  +GF+       
Sbjct: 256 ANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTT 315

Query: 158 SDFLLDLAN-----------GVVSGDPKD---------DQKALKETLISAYKSNLSEKLK 197
           +DFL  L +             V   P++         +   L +  I  Y    SE   
Sbjct: 316 ADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKE-IDEYLDRCSESDT 374

Query: 198 ------ASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNF---RQSSSFCGSKLLS 248
                 +   +    +      + +S ++ ++  Q    L RNF   + + SF    +  
Sbjct: 375 KEAYRESHVAKQSKRT------RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFG 428

Query: 249 QL 250
            +
Sbjct: 429 NI 430

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 40/144 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRL--STGETR---GNIDYNNNPLSRTVKRKTGFVAHS 67
           GE+LAILG SG GK+TL   + G L    GE      +I   +      ++++ G +   
Sbjct: 34  GEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ 93

Query: 68  NVFYLHLTVTETLVF---------------IALFRL-------------P-------IKR 92
              +  LTV E + F               + L +L             P        KR
Sbjct: 94  GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR 153

Query: 93  VSRAQELLINPSLLFLDEPASGLD 116
           V+ A+ + ++P LLFLDEP SGLD
Sbjct: 154 VALARAIALDPELLFLDEPTSGLD 177

Length = 263

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 38/147 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---DYNNNPLSRTVKRKTGFVAHSNV 69
           GE+  +LG +G GKTT    L G L    T G      Y+     +  ++  G+    + 
Sbjct: 28  GEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLGYCPQFDA 85

Query: 70  FYLHLTVTETLVFIALFR-LPIKRVSRAQELLI--------------------------- 101
            +  LTV E L F A  + LP   +    ELL+                           
Sbjct: 86  LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA 145

Query: 102 -----NPSLLFLDEPASGLDSTIAKQI 123
                 PS+L LDEP SGLD    + I
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAI 172

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 51/160 (31%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--- 54
           +LKG+     L    GE+LAI+GPSG GK+TL   + G L      G +  +   +S   
Sbjct: 15  VLKGV----DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLS 68

Query: 55  ----RTVKRKTGFVAHSNVFYLHLTVTETLVF---------------IALFRL------- 88
                 ++R+ G +  S   +  LTV E + F               I L +L       
Sbjct: 69  EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG 128

Query: 89  -----P-------IKRVSRAQELLINPSLLFLDEPASGLD 116
                P        KRV+ A+ L ++P LL  DEP +GLD
Sbjct: 129 AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 61.3 bits (150), Expect = 6e-11
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 53/178 (29%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--- 54
            L  I    SL    GE + I+GP+G GK+TL   L G L  G T G +  +   L+   
Sbjct: 16  ALDDI----SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLS 69

Query: 55  -RTVKRKTGFV-AHSNVFYLHLTVTETLVF-------------------IALFRL----- 88
            + ++RK G V  + +  +   TV E + F                   + L  L     
Sbjct: 70  LKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD 129

Query: 89  -PI--------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
                      +RV+ A  L ++P +L LDEP +GLD    +++L     L +EG ++
Sbjct: 130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTI 187

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 60.6 bits (148), Expect = 7e-11
 Identities = 45/161 (27%), Positives = 59/161 (36%), Gaps = 48/161 (29%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           ILKG+      GE+ A++GP+G GK+TL  T+ G      T G I +    +        
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI-------- 66

Query: 62  GFVAHSNVFYLHLTVTE------TLVFIALFRLP-------------------IKRVSRA 96
                       L   E       L F     +P                    KR    
Sbjct: 67  ----------TDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEIL 116

Query: 97  QELLINPSLLFLDEPASGLD----STIAKQI-LLNSEGNSL 132
           Q LL+ P L  LDEP SGLD      +A+ I  L  EG S+
Sbjct: 117 QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 56/205 (27%), Positives = 83/205 (40%), Gaps = 49/205 (23%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHS 67
           GEL+A+LGPSG GK+TL   + G  +     G I  N   L          RK GFV   
Sbjct: 28  GELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQH 85

Query: 68  NVFYLHLTVTETLVF---------------------IALFRL-------PI-------KR 92
              + H+TV + + F                     + L +L       P        +R
Sbjct: 86  YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQR 145

Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPS 152
           V+ A+ L + P +L LDEP   LD+ + K+  L      LH     GV + FV    +  
Sbjct: 146 VALARALAVEPKVLLLDEPFGALDAKVRKE--LRRWLRKLH--DRLGVTTVFV--THDQE 199

Query: 153 AAMNPSDFLLDLANG-VVSGDPKDD 176
            A+  +D ++ L  G +    P D+
Sbjct: 200 EALELADRVVVLNQGRIEQVGPPDE 224

Length = 345

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 35/137 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE+  +LGP+G GKTT    + G L    T G I +N  PLS+ +K + G++      Y 
Sbjct: 28  GEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85

Query: 73  HLTVTETLVFIA-----------------LFRLPI--KRVSRAQEL-------------- 99
            +TV + L ++A                 L RL I  K+  + +EL              
Sbjct: 86  KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV 145

Query: 100 LINPSLLFLDEPASGLD 116
           +  P LL LDEP SGLD
Sbjct: 146 IHEPELLILDEPFSGLD 162

Length = 300

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 41/162 (25%)

Query: 2   ILKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--- 55
            ++ +R VS     GE+  +LG +G GKTTL   +   L      G +  +     R   
Sbjct: 14  KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPS 71

Query: 56  TVKRKTGFVAHSNVFYLHLTVTETLVFIA----LFRLPIK-------------------- 91
            V+RK G +      Y  LT  E L + A    L R  IK                    
Sbjct: 72  FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV 131

Query: 92  ---------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                    +V+ A+ L+ +PS+L LDEP SGLD    ++  
Sbjct: 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173

Length = 245

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 52/168 (30%), Positives = 70/168 (41%), Gaps = 51/168 (30%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNID---YNNN 51
            LKG+    SL    GE +AI+GPSG GK+TL   LGG  R ++GE R    D    +  
Sbjct: 19  ALKGV----SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK 74

Query: 52  PLSRTVKRKTGFVAHSNVFYL--HLTVTETLVFIALF--RLPIKRVSRAQELL------- 100
            L+   +R  GFV  S  F L   LT  E +    L       +R  RA+ELL       
Sbjct: 75  ELAAFRRRHIGFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD 132

Query: 101 ------------------I------NPSLLFLDEPASGLDSTIAKQIL 124
                             I      +P ++  DEP   LDS   K+++
Sbjct: 133 RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 58.3 bits (142), Expect = 8e-10
 Identities = 49/169 (28%), Positives = 69/169 (40%), Gaps = 52/169 (30%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNID---YNNN 51
            LK +    +L    GE +AI+GPSG GK+TL   LGG  + ++GE      D    +  
Sbjct: 20  ALKDV----NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEK 75

Query: 52  PLSRTVKRKTGFVAHSNVFYL--HLTVTETLVFIALFR-LPIKRVSRAQELLI------- 101
            L++  ++K GFV  +  F L   LTV E +    L       R  RA E L+       
Sbjct: 76  ELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED 133

Query: 102 --------------------------NPSLLFLDEPASGLDSTIAKQIL 124
                                     NP ++  DEP   LDS  AK++L
Sbjct: 134 RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL 182

Length = 226

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 41/160 (25%)

Query: 4   KGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRL--STGE-TRGNIDYNNNPLSRTV 57
           + + GVS     GE+  +LGP+G GKTT    L G L    G  T    D    P     
Sbjct: 19  QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEA 76

Query: 58  KRKTGFVAHSNVFYLHLTVTETLVFIALF-----------------RLPIK--------- 91
           +R+ GFV+ S   Y  LT  E L + A                   RL ++         
Sbjct: 77  RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGG 136

Query: 92  -------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                  +V+ A+ L+ +P +L LDEP +GLD    + + 
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 56.2 bits (137), Expect = 2e-09
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 25/134 (18%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--- 54
           +LK +    SL    GE +AI+GPSG GK+TL   L        T G I  +   L    
Sbjct: 17  VLKDV----SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLD 70

Query: 55  -RTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLP---IKRVSRAQELLINPSLLFLDE 110
             ++++   +V   + F    T+ E +       L     +R++ A+ LL +P +L LDE
Sbjct: 71  LESLRKNIAYV-PQDPFLFSGTIRENI-------LSGGQRQRIAIARALLRDPPILILDE 122

Query: 111 PASGLDSTIAKQIL 124
             S LD      IL
Sbjct: 123 ATSALDPETEALIL 136

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 37/146 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVF 70
           G L+A+LGPSG GK+TL   + G        G I  N    +R     RK GFV      
Sbjct: 26  GSLVALLGPSGSGKSTLLRIIAGL--EQPDSGRIRLNGQDATRVHARDRKIGFVFQHYAL 83

Query: 71  YLHLTVTETLVFIALFRLPIK---------------------------------RVSRAQ 97
           + HLTV + + F    R   K                                 RV+ A+
Sbjct: 84  FKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALAR 143

Query: 98  ELLINPSLLFLDEPASGLDSTIAKQI 123
            L + P +L LDEP   LD+ + K++
Sbjct: 144 ALAVEPQVLLLDEPFGALDAKVRKEL 169

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 37/153 (24%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKR 59
            LK I      GE + +LGPSG GKTTL   + G L   +T G I      ++R    KR
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LER-QTAGTIYQGGRDITRLPPQKR 76

Query: 60  KTGFVAHSNVFYLHLTVTETLVF-------------------IALFRLPI---------- 90
             G V  S   + +LTV + + +                   + L  LP           
Sbjct: 77  DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLS 136

Query: 91  ----KRVSRAQELLINPSLLFLDEPASGLDSTI 119
               +RV+ A+ L  +P LL LDEP S LD+ +
Sbjct: 137 GGQQQRVALARALATSPGLLLLDEPLSALDARV 169

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 37/148 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVF 70
           GE   +LGPSG GKTTL   + G      T G I  +   ++     KR    V  +   
Sbjct: 26  GEFFTLLGPSGCGKTTLLRLIAG--FETPTSGEILLDGKDITNLPPHKRPVNTVFQNYAL 83

Query: 71  YLHLTVTETLVF-IALFRLPIK--------------------------------RVSRAQ 97
           + HLTV E + F + L +LP                                  RV+ A+
Sbjct: 84  FPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIAR 143

Query: 98  ELLINPSLLFLDEPASGLDSTIAKQILL 125
            L+  P +L LDEP   LD  + K + L
Sbjct: 144 ALVNEPKVLLLDEPLGALDLKLRKDMQL 171

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 47/161 (29%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKR------------- 59
           GE LAI+GP+G GK+TL   + G L    T G+I     PL +  KR             
Sbjct: 25  GEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLEKERKRIGYVPQRRSIDRD 82

Query: 60  ---------KTGFVAHSNVFYLHLT------VTETLVFIALFRL---PI--------KRV 93
                      G   H  +F   L+      V E L  + L  L    I        +RV
Sbjct: 83  FPISVRDVVLMGLYGHKGLF-RRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRV 141

Query: 94  SRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
             A+ L+ +P LL LDEP +G+D    + I      L  EG
Sbjct: 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 51/163 (31%)

Query: 13  GELLAILGPSGRGKTTL---------PTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGF 63
           GELLA++G SG GKTTL            L GR++  +     D  + P     KR    
Sbjct: 31  GELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR----DLTHAP---PHKRGLAL 83

Query: 64  VAHSNVFYLHLTVTETLVF--------------------------IALFRLPI------- 90
           +  +   + HL V + + F                           A   LP        
Sbjct: 84  LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQ 143

Query: 91  KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLH 133
           +R++ A+ + I P +L LDEP S LD+ I   +    E  +LH
Sbjct: 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMR--EEIAALH 184

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 38/141 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVF 70
           GE + +LGPSG GKTTL   + G      + G I  +   ++     KR  G V  S   
Sbjct: 31  GEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDITDVPPEKRPIGMVFQSYAL 88

Query: 71  YLHLTVTETLVF--------------------IALFRLP------IKRVSRAQE------ 98
           + H+TV E + F                    + L  L         ++S  Q+      
Sbjct: 89  FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA 148

Query: 99  --LLINPSLLFLDEPASGLDS 117
             L+  P +L LDEP S LD+
Sbjct: 149 RALVPEPKVLLLDEPLSALDA 169

Length = 352

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 41/150 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV--KRKTGFVAHSNVF 70
           GEL+A+LGPSG GKTTL   + G        G I +     +     +R  GFV      
Sbjct: 28  GELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVGFVFQHYAL 85

Query: 71  YLHLTVTETLVF--------------------IALFRL----------PI-------KRV 93
           + H+TV + + F                      L +L          P        +RV
Sbjct: 86  FRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRV 145

Query: 94  SRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           + A+ L + P +L LDEP   LD+ + K++
Sbjct: 146 ALARALAVEPKVLLLDEPFGALDAKVRKEL 175

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 45/159 (28%), Positives = 57/159 (35%), Gaps = 41/159 (25%)

Query: 4   KGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---DYNNNPLSRTV 57
           K + GV+     GE+   LGP+G GKTT    L   L        +   D    P  R V
Sbjct: 7   KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKV 64

Query: 58  KRKTGFVAHSNVFYLHLTVTETLVFIA-LFRLPIKRV-SRAQELL--------------- 100
           +R  G V         LT  E L  +  L+ LP      RA+ELL               
Sbjct: 65  RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT 124

Query: 101 ----------------INPSLLFLDEPASGLDSTIAKQI 123
                             P +LFLDEP +GLD    + I
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 43/152 (28%), Positives = 58/152 (38%), Gaps = 45/152 (29%)

Query: 13  GELLAILGPSGRGKTTLPTTLG--GRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAH 66
           GE L ++GPSG GKT   TTL    RL    T G I  +   +S      ++RK G+V  
Sbjct: 27  GEFLVLIGPSGSGKT---TTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKIGYVIQ 82

Query: 67  SNVFYLHLTVTETLVFI-------------------ALFRLPIK---------------- 91
               + HLTV E +  +                    L  L                   
Sbjct: 83  QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQ 142

Query: 92  RVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           RV  A+ L  +P +L +DEP   LD    KQ+
Sbjct: 143 RVGVARALAADPPILLMDEPFGALDPITRKQL 174

Length = 309

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 43/151 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVF 70
           G+++A+LGPSG GKTTL   + G     +T G+I ++   +SR     RK GFV      
Sbjct: 28  GQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYAL 85

Query: 71  YLHLTVTETLVFIALFRLP---------IK-----------------------------R 92
           + H+TV + + F  L  LP         IK                             R
Sbjct: 86  FRHMTVFDNIAF-GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQR 144

Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           V+ A+ L + P +L LDEP   LD+ + K++
Sbjct: 145 VALARALAVEPQILLLDEPFGALDAQVRKEL 175

Length = 353

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 35/137 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE+  +LGP+G GKTT    + G +      G + ++  PL    + + G++      Y 
Sbjct: 26  GEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEERGLYP 83

Query: 73  HLTVTETLVFIA-----------------LFRLPI--KRVSRAQEL---------LI--- 101
            + V + LV++A                 L RL +      R +EL          I   
Sbjct: 84  KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV 143

Query: 102 --NPSLLFLDEPASGLD 116
             +P LL LDEP SGLD
Sbjct: 144 IHDPELLILDEPFSGLD 160

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 40/160 (25%), Positives = 53/160 (33%), Gaps = 48/160 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLS-------RTV-KRKTG 62
           GE+L I+G SG GK+TL   L G L  G   T G +  +   L        R +  ++  
Sbjct: 35  GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIA 94

Query: 63  FVAHSN----------------VFYLHLTVTETLVF---IALFR---LPIK--------- 91
            +                       LH   +        + L     LP           
Sbjct: 95  MIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ 154

Query: 92  -------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                  RV  A  L + P LL  DEP + LD T   QIL
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL 194

Length = 539

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 36/137 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE +AILGPSG GK+TL   + G      T G +  +  P++       G+V   +    
Sbjct: 29  GEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVTG-PGPDIGYVFQEDALLP 85

Query: 73  HLTVTETLVF-------------------IALFRL-------PI-------KRVSRAQEL 99
            LTV + +                     + L  L       P        +RV+ A+ L
Sbjct: 86  WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL 145

Query: 100 LINPSLLFLDEPASGLD 116
              P LL LDEP   LD
Sbjct: 146 ATRPKLLLLDEPFGALD 162

Length = 248

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 35/147 (23%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           IL  +      GE++A+ G +G GKTTL   L G +   E+ G+I  N  P+    +RK+
Sbjct: 15  ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKS 72

Query: 62  GFVAHSNVFYLHL---TVTETLVF------------------IALFRL----PI------ 90
                 +V Y  L   +V E L+                   + L+ L    P+      
Sbjct: 73  IGYVMQDVDY-QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQ 131

Query: 91  -KRVSRAQELLINPSLLFLDEPASGLD 116
            +R++ A  LL    LL  DEP SGLD
Sbjct: 132 KQRLAIAAALLSGKDLLIFDEPTSGLD 158

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 36/137 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE +A++GPSG GK+TL   + G      T G +  +  P++       G+V   +    
Sbjct: 30  GEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLP 86

Query: 73  HLTVTETLVF-------------------IALFRL-------PI-------KRVSRAQEL 99
            LTV + +                     + L  L       P        +RV+ A+ L
Sbjct: 87  WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL 146

Query: 100 LINPSLLFLDEPASGLD 116
            ++P +L LDEP S LD
Sbjct: 147 AVDPDVLLLDEPFSALD 163

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 41/151 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVF-- 70
           GE L I+G SG GK+TL   L G      + G+I  +  PL+   + K  +     VF  
Sbjct: 33  GETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQD 90

Query: 71  -YLHL--------TVTETLVFIA---------------------LFRLPIK-------RV 93
            Y  L         ++E L                         L R P +       R+
Sbjct: 91  PYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRI 150

Query: 94  SRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           + A+ L+  P LL LDEP S LD ++  QIL
Sbjct: 151 AIARALIPEPKLLILDEPTSALDVSVQAQIL 181

Length = 252

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 41/157 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--RTVKRKTGFVAHSNVF 70
           GE + +LGPSG GK+TL   + G      T G I  +   ++     KR    V  +   
Sbjct: 29  GEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEKRGIAMVFQNYAL 86

Query: 71  YLHLTVTETLVF------------------IA--------LFRLPIK-------RVSRAQ 97
           Y H+TV E + F                  +A        L R P++       RV+ A+
Sbjct: 87  YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALAR 146

Query: 98  ELLINPSLLFLDEPASGLDSTIAK-QILLNSEGNSLH 133
            L+  P +  LDEP S LD   AK ++L+ SE   LH
Sbjct: 147 ALVRKPKVFLLDEPLSNLD---AKLRVLMRSEIKKLH 180

Length = 338

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 44/164 (26%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------R 55
           +LKGI      GE++ I+GPSG GK+TL   +   L      G I  +   L+       
Sbjct: 15  VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI-NLLEE-PDSGTIIIDGLKLTDDKKNIN 72

Query: 56  TVKRKTGFV-AHSNVFYLHLTVTE--TLVFIALFRLPIK--------------------- 91
            +++K G V    N+F  HLTV E  TL  I +  +                        
Sbjct: 73  ELRQKVGMVFQQFNLFP-HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA 131

Query: 92  -----------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                      RV+ A+ L +NP ++  DEP S LD  +  ++L
Sbjct: 132 YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 57/238 (23%), Positives = 87/238 (36%), Gaps = 74/238 (31%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT---- 56
            IL+G+      GE+  +LG +G GKTTL  TL G L      G+I  +   +++     
Sbjct: 14  HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHE 71

Query: 57  -VKRKTGFVAHSNVFYLHLTVTETL-----------------VFIALFRLPI-----KR- 92
             +    +V      +  LTV E L                 ++  LF  P+      R 
Sbjct: 72  RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIY-ELF--PVLKEMLGRR 128

Query: 93  -------------VSRAQELLINPSLLFLDEPASGLDSTIAKQI-----LLNSEGNSLHV 134
                        ++RA  L+  P LL LDEP  G+  +I K I      L +EG     
Sbjct: 129 GGDLSGGQQQQLAIARA--LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG---- 182

Query: 135 GKGDGVMSYFV---GIGFEPSAAMNPSDFLLDLANG-VVSGDPKDDQKALKETLISAY 188
                 M+  +    + F    A   +D    +  G VV+    D+   L E  +  Y
Sbjct: 183 ------MAILLVEQYLDF----ARELADRYYVMERGRVVASGAGDE---LDEDKVRRY 227

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 37/148 (25%)

Query: 6   IRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI-DYNNNPLSRTVKRKT 61
           +RGVS     GE+  +LGP+G GKTT    L   L     R  +  ++     R V+R+ 
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75

Query: 62  GFVAHSNVFYLHLTVTETL-VFIALFRLP------------------------------- 89
           G V         LT  E L +   L+ +P                               
Sbjct: 76  GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGG 135

Query: 90  -IKRVSRAQELLINPSLLFLDEPASGLD 116
             +R+  A+ L+  P +LFLDEP  GLD
Sbjct: 136 MRRRLEIARSLVHRPEVLFLDEPTIGLD 163

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 31/133 (23%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
             +  +LGP+G GK+TL   + G L    T G I ++ +P +R    K G +  S   Y 
Sbjct: 26  NSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYE 83

Query: 73  HLTVTETLVFIAL----------------------------FRLPIK-RVSRAQELLINP 103
           +LT  E L                                 F L +K R+  A  LL +P
Sbjct: 84  NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHP 143

Query: 104 SLLFLDEPASGLD 116
            LL LDEP +GLD
Sbjct: 144 KLLILDEPTNGLD 156

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 47/177 (26%), Positives = 64/177 (36%), Gaps = 53/177 (29%)

Query: 3   LKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKR 59
           +K +  VS     GE L ++G SG GK+TL   L G L    + G+I ++   L  T   
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGE 361

Query: 60  KTGFVAHS-NVF-------YLHLTV----TETLVFIA----------------------- 84
                     VF          +TV     E L                           
Sbjct: 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE 421

Query: 85  -LFRLP-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLH 133
            L R P        +RV+ A+ L + P LL LDEP S LD ++  Q+L     N L 
Sbjct: 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-----NLLK 473

Length = 539

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 39/140 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLS--TGETRGN-IDYNNNPLSRTVKRKTGFVAHSNV 69
           G+   ILGP+G GK+ L  T+ G +   +G+   N  D  N P     KR   +V  +  
Sbjct: 25  GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP---PEKRDISYVPQNYA 81

Query: 70  FYLHLTVTETLVF------------------IA--------LFRLP-------IKRVSRA 96
            + H+TV + + +                  IA        L R P        +RV+ A
Sbjct: 82  LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141

Query: 97  QELLINPSLLFLDEPASGLD 116
           + L++NP +L LDEP S LD
Sbjct: 142 RALVVNPKILLLDEPFSALD 161

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 53/160 (33%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--- 54
           +LKGI    SL    GE++ I+GPSG GK+TL   L G L      G+I  +   +    
Sbjct: 17  VLKGI----SLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEE-PDSGSITVDGEDVGDKK 70

Query: 55  --RTVKRKTGFVAHSNVFYL--HLTVTETLVF---------------IAL-----FRLPI 90
               ++RK G V     F L  HLTV E +                  AL       L  
Sbjct: 71  DILKLRRKVGMVFQQ--FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD 128

Query: 91  K--------------RVSRAQELLINPSLLFLDEPASGLD 116
           K              RV+ A+ L ++P ++  DEP S LD
Sbjct: 129 KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168

Length = 240

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 50/170 (29%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTL-------GGRLSTGETRGNIDYNNNPLS 54
           +L GI      GE++AI+GPSG GKTTL   +        G +  G+    ID     LS
Sbjct: 18  VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI--TID-TARSLS 74

Query: 55  ------RTVKRKTGFVAHSNVFYLHLTVTETLV-------------FIALFRLPI----- 90
                 R +++  GFV  +   + H TV E ++               A  R  +     
Sbjct: 75  QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL 134

Query: 91  ----------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                           +RV+ A+ L + P ++  DEP S LD  +  ++L
Sbjct: 135 AGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184

Length = 250

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 47/176 (26%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------R 55
           +LKG+   +  GE+LA+LG +G GK+TL   L G L      G +  +  PL        
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLL 64

Query: 56  TVKRKTGFV---AHSNVFY--------------------LHLTVTETLVFIALFRL---P 89
             +++ G V       +F                     +   V E L  +    L   P
Sbjct: 65  ERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124

Query: 90  I--------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
                    KRV+ A  + + P +L LDEP +GLD    +Q+L     L +EG ++
Sbjct: 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTV 180

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 51/179 (28%), Positives = 69/179 (38%), Gaps = 48/179 (26%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP---LSRTVK 58
           ILKG+      GE+ AI+GP+G GK+TL  T+ G      T G I ++      LS   +
Sbjct: 19  ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78

Query: 59  RKTG-FVAH---------SNVFYLHLTVTE-------TLVFI-------ALFRLP----- 89
            + G F+A          +N  +L   +            FI        L  L      
Sbjct: 79  ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138

Query: 90  -----------IKRVSRAQELLINPSLLFLDEPASGLD----STIAKQI-LLNSEGNSL 132
                       KR    Q LL+ P L  LDEP SGLD      +A+ I  L  EG  +
Sbjct: 139 RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGV 197

Length = 251

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 47/165 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG--RLSTGETR------GNIDYNNNPL 53
           ILKG+  V   GE +AI+GPSG GK+TL   L G    S+GE R        +D +    
Sbjct: 25  ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84

Query: 54  SRTVKRKTGFVAHSNVFYL--HLTVTETLVFIALFR------------------------ 87
            R   R  GFV  S  F+L  +LT  E +      R                        
Sbjct: 85  LR--ARHVGFVFQS--FHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRL 140

Query: 88  --LPI-------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
              P        +RV+ A+     P +LF DEP   LD     +I
Sbjct: 141 THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185

Length = 228

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 38/140 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRL--STGETRGN-IDYNNNPLSRTVKRKTGFVAHSNV 69
           G ++  LGP+G GK+T    + G L   +G  +    D   NP    V+R  G++   N 
Sbjct: 28  GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE--VQRNIGYLPEHNP 85

Query: 70  FYLHLTVTETLVFIA-LFRLPI--------------------------------KRVSRA 96
            YL + V E L FIA ++ +                                  +RV  A
Sbjct: 86  LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLA 145

Query: 97  QELLINPSLLFLDEPASGLD 116
           Q L+ +P +L LDEP +GLD
Sbjct: 146 QALIHDPKVLILDEPTTGLD 165

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 33/135 (24%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVF 70
           GE+   LGP+G GKTT    + G  +  +GE   +       +     R+ G +  +  F
Sbjct: 26  GEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE--ALRRIGALIEAPGF 83

Query: 71  YLHLTVTETLVFIA-LFRLPIKRVSR----------------------------AQELLI 101
           Y +LT  E L  +A L  +  KR+                              A  LL 
Sbjct: 84  YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG 143

Query: 102 NPSLLFLDEPASGLD 116
           NP LL LDEP +GLD
Sbjct: 144 NPDLLILDEPTNGLD 158

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 54/173 (31%), Positives = 74/173 (42%), Gaps = 49/173 (28%)

Query: 3   LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL--STGET--RGN-IDYNNNPLSRTV 57
           LKGI   +  GE++A+LGP+G GK+TL     G L  ++GE   +G  I Y+   L   V
Sbjct: 18  LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE-V 76

Query: 58  KRKTGFVAHS---NVFYLHLTVTETLVFIAL-FRLPI----------------------- 90
           ++  G V  +    +F    TV E + F  L   L                         
Sbjct: 77  RKTVGIVFQNPDDQLF--APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP 134

Query: 91  ---------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
                    KRV+ A  L + P ++ LDEP SGLD   A QI+     LN EG
Sbjct: 135 PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG 187

Length = 275

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 49/171 (28%), Positives = 69/171 (40%), Gaps = 51/171 (29%)

Query: 6   IRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-----V 57
           + GVS     GE++A+LG +G GKTTL  T+ G L      G+I ++   ++        
Sbjct: 16  LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERA 73

Query: 58  KRKTGFVA-HSNVFYLHLTVTETL------------------VFIALF-RLPIKRVSRAQ 97
           +   G+V     +F   LTV E L                  V+  LF RL  +R   A 
Sbjct: 74  RAGIGYVPEGRRIF-PELTVEENLLLGAYARRRAKRKARLERVY-ELFPRLKERRKQLAG 131

Query: 98  EL--------------LINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
            L              +  P LL LDEP+ GL   I ++I      L  EG
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG 182

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 42/153 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTL-------GGRLSTGETRGNIDYNNNPLS-RTVKRKTGFV 64
           GE L +LGPSG GK++L   L        G L+      +     +  + R ++R  G V
Sbjct: 28  GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMV 87

Query: 65  AHSNVFYLHLTVTETLV--------------------FIALFRL-------PI------- 90
                 + HLTV + L+                     +   RL       P+       
Sbjct: 88  FQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQ 147

Query: 91  KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           +RV+ A+ L++ P +L  DEP + LD  I  QI
Sbjct: 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180

Length = 242

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 42/152 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVA 65
           GE L + GPSG GKTTL   L G L+   +RG +      ++R        ++R+ G V 
Sbjct: 28  GEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVF 85

Query: 66  HSNVFYLHLTVTE----------------------TLVFIAL----FRLPI-------KR 92
                    TV E                       L  + L       P        +R
Sbjct: 86  QDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQR 145

Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           V+ A+ ++ +P LL  DEP   LD  ++++IL
Sbjct: 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 32/146 (21%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN-NPLSRTVKRK 60
           +  G+    + GE L + GP+G GKTTL   + G L      G I  +  +     V   
Sbjct: 17  LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEA 74

Query: 61  TGFVAHSNVFYLHLTVTETLVFIALFR---------------------LPIK-------- 91
             ++ H N     LTV E L F A F                      LP          
Sbjct: 75  CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKR 134

Query: 92  RVSRAQELLINPSLLFLDEPASGLDS 117
           RV+ A+ L+ N  +  LDEP + LD+
Sbjct: 135 RVALARLLVSNRPIWILDEPTAALDA 160

Length = 207

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 42/167 (25%), Positives = 58/167 (34%), Gaps = 62/167 (37%)

Query: 12  LGELLAILGPSGRGKTTL--------PTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGF 63
            GE  AI+GP+G GKTTL        P + G     G   G  +         ++++ G 
Sbjct: 56  PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI-----FELRKRIGL 110

Query: 64  VAHSNVFYLHLTV-TETLVF----------IALFRLPIKRVS--RAQELLI--------- 101
           V+      LH        V           I +++  +       AQ LL          
Sbjct: 111 VSSE----LHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD 166

Query: 102 ----------------------NPSLLFLDEPASGLDSTIAKQILLN 126
                                 +P LL LDEPA GLD  IA++ LLN
Sbjct: 167 RPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD-LIAREQLLN 212

Length = 257

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 51/183 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY-NNNPLSRTVKRK 60
           IL+G+      GE+ AI+GP+G GK+TL  TL GR     T G +++   + L  + + +
Sbjct: 16  ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75

Query: 61  TG---FVAH---------SNVFYLHLTVTETLVF------------------IALFRLPI 90
            G   F+A          SN F+L   +     +                  IAL ++P 
Sbjct: 76  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE 135

Query: 91  KRVSRA----------------QELLINPSLLFLDEPASGLDSTIAKQILLNSEG-NSLH 133
             ++R+                Q  ++ P L  LDE  SGLD    K +   ++G NSL 
Sbjct: 136 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIV---ADGVNSLR 192

Query: 134 VGK 136
            GK
Sbjct: 193 DGK 195

Length = 248

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 40/151 (26%)

Query: 4   KGIRGVS-SLGE-LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVK 58
           + + GVS +LG  +  +LGP+G GKTTL   L        + G I  +   + +    ++
Sbjct: 14  RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLR 71

Query: 59  RKTGFVAHSNVFYLHLTVTETLVFIA-LFRLPIKRVSR---------------------- 95
           R+ G++      Y + TV E L +IA L  +P K V                        
Sbjct: 72  RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSL 131

Query: 96  ----------AQELLINPSLLFLDEPASGLD 116
                     AQ L+ +PS+L +DEP +GLD
Sbjct: 132 SGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 46/156 (29%)

Query: 13  GELLAILGPSGRGKTTLPTTL-------GGRLSTGETRGNIDYNNNPLS---RTVKRKTG 62
           GE L +LGPSG GK++L   L        G L+      + D++  P     R ++R  G
Sbjct: 28  GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN--HFDFSKTPSDKAIRDLRRNVG 85

Query: 63  FVAHSNVFYLHLTVTETLV--------------------FIALFRL-------PI----- 90
            V      + HLTV E L+                     +   RL       P+     
Sbjct: 86  MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGG 145

Query: 91  --KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
             +RV+ A+ L++ P +L  DEP + LD  I  QI+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV 181

Length = 242

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 42/159 (26%), Positives = 59/159 (37%), Gaps = 43/159 (27%)

Query: 6   IRGVS---SLGELLAILGPSGRGKTTLPTTLGG--RLSTGE-TRGNIDYNNNPLSRTVKR 59
           +RGVS     GE++A+LG +G GKTTL  T+ G  R  +G       D    P     + 
Sbjct: 19  LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78

Query: 60  KTGFVAHS-NVFYLHLTVTETLVFIALFRLPIKRVSR----------------------- 95
              +V     +F   LTV E L  +  +    K                           
Sbjct: 79  GIAYVPEGRRIF-PRLTVEENL-LLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGT 136

Query: 96  -----------AQELLINPSLLFLDEPASGLDSTIAKQI 123
                      A+ L+  P LL LDEP+ GL   I ++I
Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175

Length = 237

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 35/145 (24%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGET-RGNIDYNNNPLSR--TVKRKTGFVAHSNV 69
           GE++ ++GPSG GK+TL + + G L+   +  G +  N   L      +R+ G +    +
Sbjct: 28  GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDAL 87

Query: 70  FYLHLTVTETLVFI----------------ALFRLPIK----------------RVSRAQ 97
            + HL+V + L+F                 AL R  +                 RV+  +
Sbjct: 88  LFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLR 147

Query: 98  ELLINPSLLFLDEPASGLDSTIAKQ 122
            LL  P  L LDEP S LD  +  Q
Sbjct: 148 ALLAQPKALLLDEPFSRLDVALRDQ 172

Length = 213

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 44/145 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP---LSRTVKRKT-GFVAHSN 68
           G+L A++G SG GK+TL   L G L+   T+G I  N      LS    RK   +V+ + 
Sbjct: 347 GQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404

Query: 69  VFYLHLTVTETLVFIA-------------------LFRLP------------------IK 91
                 T+ E ++                          P                   +
Sbjct: 405 YL-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQ 463

Query: 92  RVSRAQELLINPSLLFLDEPASGLD 116
           R++ A+ LL   SLL LDEP + LD
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLD 488

Length = 559

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 24/135 (17%)

Query: 3   LKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSRT 56
           +K + GVS     GE L ++G SG GK+TL     GRL  G    T G I +    +++ 
Sbjct: 26  VKAVDGVSFSIKEGETLGLVGESGCGKSTL-----GRLILGLEEPTSGEILFEGKDITKL 80

Query: 57  VKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIK-------RVSRAQELLINPSLLFLD 109
            K +        V  L   V     F  L+R P +       R+  A+ L +NP L+  D
Sbjct: 81  SKEE----RRERVLELLEKVGLPEEF--LYRYPHELSGGQRQRIGIARALALNPKLIVAD 134

Query: 110 EPASGLDSTIAKQIL 124
           EP S LD ++  QIL
Sbjct: 135 EPVSALDVSVQAQIL 149

Length = 268

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSRTVKRK 60
           ILK   G+     +  +LGP   GKTTL   L G+L    +  G I YN   L+  V RK
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239

Query: 61  T-GFVAHSNVFYLHLTVTETLVFIA 84
           T  +++ ++V    +TV ETL F A
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSA 264

Length = 1470

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 42/157 (26%), Positives = 57/157 (36%), Gaps = 51/157 (32%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL----SRTVKRKTGFVAHSN 68
           GE+  ILGP+G GK+TL   L G L      G +  +   +     + + +K  +V  S 
Sbjct: 28  GEITGILGPNGSGKSTLLKCLAGLLKPKS--GEVLLDGKDIASLSPKELAKKLAYVPQSP 85

Query: 69  VFYLHLTVTETLVFIALFRLP------------IKRVSRA-------------------- 96
                LTV E    + L R P             + V  A                    
Sbjct: 86  SAPFGLTVYE---LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGG 142

Query: 97  --QELLI------NPSLLFLDEPASGLDSTIAKQILL 125
             Q +LI         +L LDEP S LD  IA QI +
Sbjct: 143 ERQRVLIARALAQETPILLLDEPTSHLD--IAHQIEV 177

Length = 258

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 19/121 (15%)

Query: 268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPWLIKP---------QSIRLA 318
           +  S+Y +AK + +LP+ L    +F+++ Y+M  +  +  +L              + L 
Sbjct: 91  YSPSAYVLAKILVELPISLLQAIIFLLIVYFMVGLPVSRFFLFLLVLLLTALAASGLGLF 150

Query: 319 IGAVLMKQKVASTITATIVLQYLL---------QRLPVFTSWFEYASLTYYSYRLLLPSQ 369
           I A+    + AS I   ++L  LL           +P +  W  Y +   Y+   L  ++
Sbjct: 151 IAALAPSFEDASQI-GPLLLLPLLLLSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANE 209

Query: 370 Y 370
           +
Sbjct: 210 F 210

Length = 210

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 48/175 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------- 54
           +LKG+      GE++AI+G SG GK+TL   LGG L    T G + +N   LS       
Sbjct: 20  VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDN-PTSGEVLFNGQSLSKLSSNER 77

Query: 55  -RTVKRKTGFVAHSNVFYLHLTVTETLVFIALF-----------------------RLPI 90
            +   +K GF+   +      T  E +    L                        R+  
Sbjct: 78  AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH 137

Query: 91  K----------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGN 130
           +          RV+ A+ L+  PSL+  DEP   LD+  AK I      LN E N
Sbjct: 138 RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 39/172 (22%), Positives = 62/172 (36%), Gaps = 56/172 (32%)

Query: 4   KGIRGVS-SL--GELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS--- 54
           K +  VS S+  GE L ++G SG GK+TL      R   G    T G+I ++   L    
Sbjct: 19  KALDDVSFSIKKGETLGLVGESGSGKSTL-----ARAILGLLKPTSGSIIFDGKDLLKLS 73

Query: 55  ----RTVKRKTGFVAHSNVFYLH--LTVTETLVFIALFRLPIKRVSRAQE---------- 98
               +  +++   V    +  L+  +T+ E +         + +    +E          
Sbjct: 74  RRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVG 133

Query: 99  --------------------------LLINPSLLFLDEPASGLDSTIAKQIL 124
                                     L +NP LL  DEP S LD ++  QIL
Sbjct: 134 LPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 44/174 (25%), Positives = 64/174 (36%), Gaps = 49/174 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTL---------PT----TLGGRLSTGETRGN--- 45
           +L+ I      GE+ A++GP+G GK+TL         P+     + G+      +     
Sbjct: 19  VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIG 78

Query: 46  -------IDYNNNPLSRTVKR--KTGFVAHSNVFYLHLTVTETLVFIALFRL-------- 88
                  +D +      TVK     G       F       +  V  AL R+        
Sbjct: 79  YVPQKSSVDRS---FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR 135

Query: 89  PI--------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
            I        +RV  A+ L  NP LL LDEP +G+D    K+I      L  EG
Sbjct: 136 QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189

Length = 254

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 45/156 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSN 68
           GE +AI+G SG GK+TL   L G       +G I  +   L+     +++R+ G+V    
Sbjct: 499 GEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556

Query: 69  VFYLHLTVTETL-----------VFIALF---------RLPIK----------------- 91
             +   ++ E +           +  A            LP+                  
Sbjct: 557 FLF-SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615

Query: 92  -RVSRAQELLINPSLLFLDEPASGLDSTIAKQILLN 126
            R++ A+ LL  P +L LDE  S LD      IL N
Sbjct: 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQN 651

Length = 709

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 37/160 (23%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL--STGETR-GNIDYNNNPLSRTVK 58
            LK +      GE + ++GP+G GK+TL   L G L  ++GE     +D ++      ++
Sbjct: 19  ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78

Query: 59  RKTGFV---AHS---------NVFYLHLT-----------VTETLVFIALFRL---PI-- 90
           +K G V                V +               V E L  + L  L   P   
Sbjct: 79  QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN 138

Query: 91  ------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                 +RV+ A  L + P +L LDEP +GLD    +++L
Sbjct: 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL 178

Length = 235

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 40/157 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGE-TRGNIDYNNNPLSRTVKRKTGFVAHSNV 69
           GE++ ++G +G GKTTL  TL G  R ++G       D  +   ++ ++     V     
Sbjct: 31  GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR 90

Query: 70  FYLHLTVTETLVFIALF------------------RLPIKRVSRA--------------Q 97
            +  +TV E L     F                  RL  +R+ RA              +
Sbjct: 91  VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150

Query: 98  ELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
            L+  P LL LDEP+ GL   I +QI      L  +G
Sbjct: 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG 187

Length = 237

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 41/157 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNIDYNNNPLSRTVKRKTGFVAHSNV 69
           GE + +LGPSG GKTT    + G    ++G    G  D  + P      R    V  +  
Sbjct: 26  GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK---DRDIAMVFQNYA 82

Query: 70  FYLHLTVTETLVF---IALFRLPI--KRVSRAQELL------------------------ 100
            Y H+TV + + F   +         +RV    ELL                        
Sbjct: 83  LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG 142

Query: 101 ----INPSLLFLDEPASGLDSTIAKQILLNSEGNSLH 133
                 P +  +DEP S LD+ +  Q  + +E   L 
Sbjct: 143 RAIVREPKVFLMDEPLSNLDAKLRVQ--MRAELKRLQ 177

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 37/147 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV--KRKTGFVAHSNVF 70
           GE +AILGPSG GK+TL   + G L+     G++  N    + T   +R    +   N  
Sbjct: 25  GERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSMLFQENNL 82

Query: 71  YLHLTVT------------------ETLVFIA--------LFRLPI-------KRVSRAQ 97
           + HLTV                   E L  IA        L RLP        +RV+ A+
Sbjct: 83  FSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALAR 142

Query: 98  ELLINPSLLFLDEPASGLDSTIAKQIL 124
            L+    +L LDEP S LD  + +++L
Sbjct: 143 CLVREQPILLLDEPFSALDPALRQEML 169

Length = 232

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 31/128 (24%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFV---- 64
           GE++ ILGP+G GK+TL  TL G L      G I  +   L+    + + RK  +V    
Sbjct: 25  GEIVGILGPNGAGKSTLLKTLAGLLKPSS--GEILLDGKDLASLSPKELARKIAYVPQAL 82

Query: 65  AHSNVFYLHLTVTETL-------VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDS 117
               + +L       L       V +A          RA  L   P +L LDEP S LD 
Sbjct: 83  ELLGLAHLADRPFNELSGGERQRVLLA----------RA--LAQEPPILLLDEPTSHLD- 129

Query: 118 TIAKQILL 125
            IA QI L
Sbjct: 130 -IAHQIEL 136

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 42/162 (25%)

Query: 3   LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------- 55
           L GI    S GE + ++GPSG GK+TL   +        T G I  N   +S        
Sbjct: 17  LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74

Query: 56  TVKRKTGFVAHSNVFYLHLTVTETLVF-----------------IALFRLPIK------- 91
            ++RK G V           V E + F                  AL  + +        
Sbjct: 75  YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134

Query: 92  ---------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                    RV+ A+ ++ +P++L  DEP   LD     +I+
Sbjct: 135 AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 40/164 (24%), Positives = 58/164 (35%), Gaps = 47/164 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY- 71
           GELL +LGP+G GKTTL   + G       +G +            R  G+V   + F  
Sbjct: 6   GELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGAS-PGKGWRHIGYVPQRHEFAW 62

Query: 72  -LHLTVTETLV-----FIALFRLPIK--------------------------------RV 93
              ++V  T++      I   R P                                  RV
Sbjct: 63  DFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRV 122

Query: 94  SRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
             A+ L   PS+L LDEP +GLD    + +      L   G ++
Sbjct: 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 48/153 (31%), Positives = 61/153 (39%), Gaps = 47/153 (30%)

Query: 14  ELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNNNPL--SR------TVKRKTG 62
            + AI G SG GKTTL      RL  G TR   G I  N   L  SR        KR+ G
Sbjct: 24  GVTAIFGRSGSGKTTLI-----RLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78

Query: 63  FVAHSNVFYLHLTVTETLVF-----------------IALF-------RLPIK------- 91
           +V      + HL+V   L +                 I L        RLP +       
Sbjct: 79  YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQ 138

Query: 92  RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           RV+  + LL +P LL +DEP + LD     +IL
Sbjct: 139 RVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 37/143 (25%)

Query: 17  AILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK--------RKTGFVAHSN 68
           A+ GPSG GKT+L   + G     E  G I+ N   L    K        R+ G+V    
Sbjct: 28  ALFGPSGSGKTSLINMIAGLTRPDE--GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85

Query: 69  VFYLHLTVTETLVF-------------IALF-------RLPIK-------RVSRAQELLI 101
             + H TV   L +             +AL        R P         RV+  + LL 
Sbjct: 86  RLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT 145

Query: 102 NPSLLFLDEPASGLDSTIAKQIL 124
            P LL +DEP + LD    ++IL
Sbjct: 146 APELLLMDEPLASLDLPRKREIL 168

Length = 352

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 36/152 (23%), Positives = 51/152 (33%), Gaps = 43/152 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI--------DYNNNPLSRTVKRKTGFV 64
           GE+  I+G SG GK+T    L  RL    T G I          +   L    ++K G V
Sbjct: 19  GEIFVIMGLSGSGKSTTVRML-NRL-IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMV 76

Query: 65  AHSNVFYLHLTVTETLVFI-ALFRLPI-KRVSRAQELL---------------------- 100
                 + H+T+ +       L   P  +R  +A ELL                      
Sbjct: 77  FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQ 136

Query: 101 ---------INPSLLFLDEPASGLDSTIAKQI 123
                      P +L +DE  S LD  I   +
Sbjct: 137 RVGLARALAAEPDILLMDEAFSALDPLIRDSM 168

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 44/152 (28%)

Query: 6   IRGVS---SLGELLAILGPSGRGKTTLPTTLGGRL--STGETR--GNIDYNNNPLSRTVK 58
           ++G+S     GE++  +GP+G GKTT    L G L  ++GE R  G + +      +   
Sbjct: 37  LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR---RKKFL 93

Query: 59  RKTGFV-AHSNVFYLHLTVTETLVFIA-------------------------LFRLPIKR 92
           R+ G V       +  L V ++   +A                         L   P+++
Sbjct: 94  RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQ 153

Query: 93  VSRAQE--------LLINPSLLFLDEPASGLD 116
           +S  Q         LL  P +LFLDEP  GLD
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 47/177 (26%), Positives = 65/177 (36%), Gaps = 54/177 (30%)

Query: 2   ILKGIRGVS-SL--GELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNNNPL-- 53
           ++K + GVS  L  GE+L I+G SG GK+ L   + G L     R   G I ++   L  
Sbjct: 17  VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76

Query: 54  -SRTVKRK-----TGFV--AHSNVFYLHLTV----TETLVF--------------IALFR 87
            S    RK        +           +T+     E L                I L  
Sbjct: 77  LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLE 136

Query: 88  L-----PIKRVSR---------AQELLI------NPSLLFLDEPASGLDSTIAKQIL 124
           L     P +R+            Q ++I      NP LL  DEP + LD T+  QIL
Sbjct: 137 LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL 193

Length = 316

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 41/142 (28%), Positives = 55/142 (38%), Gaps = 39/142 (27%)

Query: 18  ILGPSGRGKTTLPTTLGG--RLSTGETR-GNIDYNNNPLSRTVKRKTGFVAHSNVFYLHL 74
           +LGPSG GKTTL   L G  +  +G       D  N P      R    V  S   + H+
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL---RHINMVFQSYALFPHM 57

Query: 75  TVTETLVF----------------IALFRL----------PI-------KRVSRAQELLI 101
           TV E + F                +   RL          P        +RV+ A+ L+ 
Sbjct: 58  TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117

Query: 102 NPSLLFLDEPASGLDSTIAKQI 123
            P +L LDEP S LD  +  Q+
Sbjct: 118 KPKILLLDEPLSALDKKLRDQM 139

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRL--STGETR-GNIDYNNNPLSRTVKRKT-GFVAHSN 68
           GE LAI+GPSG GK+TL   + G L  ++G  R    D   +           G++   +
Sbjct: 28  GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI--SQWDPNELGDHVGYLPQ-D 84

Query: 69  VFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDS 117
                 ++ E +    L     +R+  A+ L  NP +L LDEP S LD 
Sbjct: 85  DELFSGSIAENI----LSGGQRQRLGLARALYGNPRILVLDEPNSHLDV 129

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 56/185 (30%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN------NPLSR 55
           ILKG+      GE+ AI+GP+G GK+TL  T+ G  S   T G I +         P  R
Sbjct: 15  ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74

Query: 56  TVKRKTGFVAH---------SNVFYLH-----------LTVTETLVFIALFRLPIKRV-- 93
              R   F+A          SN+ +L                + L F+ L +  +  +  
Sbjct: 75  A--RAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132

Query: 94  -----SRA----------------QELLINPSLLFLDEPASGLD----STIAKQI-LLNS 127
                +R+                Q  L+ P L  LDE  SGLD      +A+ I  L  
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192

Query: 128 EGNSL 132
              S 
Sbjct: 193 PDRSF 197

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 37/137 (27%), Positives = 51/137 (37%), Gaps = 35/137 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNV 69
           GE L I GP+G GKTTL   L G L      G + +   P+     +  +   ++ H   
Sbjct: 28  GEALQITGPNGAGKTTLLRILAGLLRPDA--GEVYWQGEPIQNVRESYHQALLYLGHQPG 85

Query: 70  FYLHLTVTETLVF----------------IALFRL------PI--------KRVSRAQEL 99
               LT  E L F                +A   L      P+        +RV+ A+  
Sbjct: 86  IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW 145

Query: 100 LINPSLLFLDEPASGLD 116
           L    L  LDEP + LD
Sbjct: 146 LSPAPLWILDEPFTALD 162

Length = 209

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 48/170 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG--RLSTGETRGNIDYNNNPLS----R 55
            LK +    + GE++AI+GPSG GK+TL  +L G    ++GE   N       L     R
Sbjct: 19  ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN-GVQITKLKGKELR 77

Query: 56  TVKRKTGFVAHSNVFYLHLTVTETL---------VFIALFRLPIK--------------- 91
            ++R  G +         L+V E +          + +LF L  K               
Sbjct: 78  KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGI 137

Query: 92  -----------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                            RV+ A+ L+  P ++  DEP + LD   AK+++
Sbjct: 138 LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187

Length = 258

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 41/143 (28%), Positives = 55/143 (38%), Gaps = 41/143 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT----VKRKTGFVAHSN 68
           GE L ++GPSG GKTT    +  RL    T G I  +   +       ++RK G+V    
Sbjct: 27  GEFLVLIGPSGSGKTTTMKMI-NRLIE-PTSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84

Query: 69  VFYLHLTVTE--TLV-----------------FIALFRLPIK----------------RV 93
             + H+TV E   LV                  +AL  L                   RV
Sbjct: 85  GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV 144

Query: 94  SRAQELLINPSLLFLDEPASGLD 116
             A+ L  +P LL +DEP   LD
Sbjct: 145 GVARALAADPPLLLMDEPFGALD 167

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 33/145 (22%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE++AI+GPSG GK+TL   + G +        ++  ++      +R    +   N  + 
Sbjct: 24  GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83

Query: 73  HLTVTETL------------------------VFIA--LFRLP-------IKRVSRAQEL 99
           HLTV + +                        V IA  L RLP        +RV+ A+ L
Sbjct: 84  HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCL 143

Query: 100 LINPSLLFLDEPASGLDSTIAKQIL 124
           +    +L LDEP S LD  + +++L
Sbjct: 144 VRPNPILLLDEPFSALDPLLREEML 168

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 54/162 (33%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---DYNNNPLS----RTVKRKTGFV- 64
           GE +A++GPSG GK+TL   L G L    T G++     + N L     R ++R+ G + 
Sbjct: 27  GEFVALIGPSGAGKSTLLRCLNG-LVEP-TSGSVLIDGTDINKLKGKALRQLRRQIGMIF 84

Query: 65  ----------AHSNVFYLHLTVTETLVFIALFRLP-----------IKRV-------SRA 96
                        NV  L   +     + +LF L            ++RV        RA
Sbjct: 85  QQFNLIERLSVLENV--LSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA 142

Query: 97  QEL-------------LI-NPSLLFLDEPASGLDSTIAKQIL 124
            +L             L+  P L+  DEP + LD   ++Q++
Sbjct: 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 42/151 (27%), Positives = 58/151 (38%), Gaps = 49/151 (32%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNI-----DYNNNPLSRTVKRKTGFV 64
           GE L +LGPSG GKTT+      RL  G      G I     D  + P      R    V
Sbjct: 40  GEFLTLLGPSGCGKTTVL-----RLIAGFETPDSGRIMLDGQDITHVPAE---NRHVNTV 91

Query: 65  AHSNVFYLHLTVTETLVF-------------------IALFRL-------PI-------K 91
             S   + H+TV E + F                   + + +L       P        +
Sbjct: 92  FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQ 151

Query: 92  RVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122
           RV+ A+ ++  P +L LDE  S LD  + KQ
Sbjct: 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQ 182

Length = 375

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 38/140 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL---SRTVKRKTGFVAHSNV 69
           GE   +LGP+G GK+T+   + G  S     G I     P+   +R  + + G V   + 
Sbjct: 67  GECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFDN 124

Query: 70  FYLHLTVTETL-VFIALFRLPI--------------------------------KRVSRA 96
             L  TV E L VF   F +                                  +R++ A
Sbjct: 125 LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLA 184

Query: 97  QELLINPSLLFLDEPASGLD 116
           + L+ +P LL LDEP +GLD
Sbjct: 185 RALINDPQLLILDEPTTGLD 204

Length = 340

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 50/171 (29%), Positives = 66/171 (38%), Gaps = 57/171 (33%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTL-------GGRLSTGETR---GNI- 46
            LK I    SL    GE+ A++GPSG GK+TL   L        G    GE      +I 
Sbjct: 15  ALKDI----SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70

Query: 47  DYNNNPLSRTVKRKTGFV----------AHSNVFY------------LHLTVTETLVFIA 84
           D + + L   ++R+ G V           + NV Y            L   V E L   A
Sbjct: 71  DLDVDVLE--LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAA 128

Query: 85  LF-----RLPIK--------RVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122
           L+     RL           R+  A+ L   P +L LDEP S LD  I+  
Sbjct: 129 LWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTA 178

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 48/155 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGE---TRGNIDYNNNPLSRT-------VKRKTG 62
           GE + + GPSG GK+TL      +L  GE   TRG I  N + LSR        ++R+ G
Sbjct: 28  GEFVFLTGPSGAGKSTLL-----KLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG 82

Query: 63  FVAHSNVFYLHLTVTE-----------------TLVFIALFR---------LPI------ 90
            V          TV E                   V   L           LP       
Sbjct: 83  VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGE 142

Query: 91  -KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
            +RV+ A+ ++  P++L  DEP   LD  ++ +I+
Sbjct: 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177

Length = 223

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 34/136 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK---RKTGFVAHSNV 69
           GE L + GP+G GKTTL   L G L      G + +N   L+       R   ++ H   
Sbjct: 26  GEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPG 83

Query: 70  FYLHLTVTETLVFIALF---------------------RLPI--------KRVSRAQELL 100
               L+  E L F A                        LP         +R++ A+  L
Sbjct: 84  LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWL 143

Query: 101 INPSLLFLDEPASGLD 116
               L  LDEP + LD
Sbjct: 144 SRAPLWILDEPTTALD 159

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 38/140 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKR---KTGFVAHSNV 69
           G  +A+LGP+G GK+TL + L          G I    + L R  +    + G V     
Sbjct: 27  GRFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRAALARLGVVFQQPT 84

Query: 70  FYLHLTVTETLVFIA-----------------LFRLPI----------------KRVSRA 96
             L L+V + L + A                 L RL +                +RV  A
Sbjct: 85  LDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIA 144

Query: 97  QELLINPSLLFLDEPASGLD 116
           + LL  P+LL LDEP  GLD
Sbjct: 145 RALLHRPALLLLDEPTVGLD 164

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 38/140 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL---SRTVKRKTGFVAHSNV 69
           GE   +LGP+G GK+T+   L G +S    RG I     P+   +R  +   G V   + 
Sbjct: 30  GECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRARLARVAIGVVPQFDN 87

Query: 70  FYLHLTVTETL-VFIALFRLPIK--------------------------------RVSRA 96
                TV E L VF   F +  +                                R++ A
Sbjct: 88  LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLA 147

Query: 97  QELLINPSLLFLDEPASGLD 116
           + L+ +P LL LDEP +GLD
Sbjct: 148 RALINDPQLLILDEPTTGLD 167

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 36/144 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFV-------- 64
           GEL+ +LGPSG GKTTL   + G ++   +RG+I  N   +      + G V        
Sbjct: 31  GELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGAER-GVVFQNEALLP 87

Query: 65  ---AHSNV-FYLHL----------TVTETLVFIAL----FRLPI-------KRVSRAQEL 99
                 NV F L L             + L  + L     +          +RV  A+ L
Sbjct: 88  WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARAL 147

Query: 100 LINPSLLFLDEPASGLDSTIAKQI 123
            + P LL LDEP   LD+   +Q+
Sbjct: 148 AVEPQLLLLDEPFGALDALTREQM 171

Length = 259

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 32/134 (23%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNV 69
           GE L + GP+G GKTTL   L G        G +  N  PL     ++ R   ++ H+  
Sbjct: 26  GEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPG 83

Query: 70  FYLHLTVTETL-----------VFIALFRLPI----------------KRVSRAQELLIN 102
               L+V E L           V  AL R+ +                +RV+ A+ LL  
Sbjct: 84  IKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSG 143

Query: 103 PSLLFLDEPASGLD 116
             L  LDEP + LD
Sbjct: 144 RPLWILDEPTTALD 157

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR 55
          GE++AILGP+G GK+TL   L G LS     G +  N  PL+ 
Sbjct: 28 GEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLAD 68

Length = 258

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 44/155 (28%)

Query: 11  SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAH 66
             GE+L ++GP+G GK+TL   + G  S     G+I +   PL       + R   +++ 
Sbjct: 23  RAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQ 79

Query: 67  SN-------VF-YLHL-----TVTETLVFIA-LFRLPIK--------------RVSRAQE 98
                    V+ YL L     T TE L  +A    L  K              RV  A  
Sbjct: 80  QQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAV 139

Query: 99  LL-----INPS--LLFLDEPASGLDSTIAKQILLN 126
           +L      NP+  LL LDEP + LD  +A+Q  L+
Sbjct: 140 VLQITPDANPAGQLLLLDEPMNSLD--VAQQSALD 172

Length = 248

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 37/139 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVF 70
           GE+ A+LG SG GK+TL   L G      T G I  +   LS     +R    +  S   
Sbjct: 45  GEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINMMFQSYAL 102

Query: 71  YLHLTVTETLVF-IALFRLPI--------------------------------KRVSRAQ 97
           + H+TV + + F +   +LP                                 +RV+ A+
Sbjct: 103 FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALAR 162

Query: 98  ELLINPSLLFLDEPASGLD 116
            L   P LL LDEP   LD
Sbjct: 163 SLAKRPKLLLLDEPMGALD 181

Length = 377

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 50/171 (29%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------- 54
            LK I    + GE +AI+GPSG GK+TL   +  RL    + G+I      ++       
Sbjct: 17  ALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVE-PSSGSILLEGTDITKLRGKKL 74

Query: 55  RTVKRKTGFV-----------AHSNVFYLHLTVTETLVFI--------------ALFRLP 89
           R ++R+ G +              NV +  L    T   +              AL R+ 
Sbjct: 75  RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG 134

Query: 90  IK----------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           +                 RV+ A+ L   P L+  DEP + LD   +KQ++
Sbjct: 135 LADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM 185

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 16/110 (14%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI--DYNNNP-LSR----TVKRKTGFVA 65
           G++ AI+GPSG GKTTL   +GG+++     G I  D  N P +SR    TV+++   + 
Sbjct: 33  GKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIPAMSRSRLYTVRKRMSMLF 90

Query: 66  HSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGL 115
            S   +  + V + + +      P++  ++    L++ +++   E A GL
Sbjct: 91  QSGALFTDMNVFDNVAY------PLREHTQLPAPLLHSTVMMKLE-AVGL 133

Length = 269

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 25/110 (22%)

Query: 8   GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHS 67
           GV   GE++ I+GP+G GKTT    L G+L       N ++        V +        
Sbjct: 20  GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG--DNDEW---DGITPVYKPQ------ 68

Query: 68  NVFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDS 117
              Y+ L+  E           ++RV+ A  LL N +    DEP++ LD 
Sbjct: 69  ---YIDLSGGE-----------LQRVAIAAALLRNATFYLFDEPSAYLDI 104

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 3  LKGIRGVS-SL--GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY 48
           KG R VS  L  GE+L I+G SG GKTTL   L  RL+     G + Y
Sbjct: 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHY 65

Length = 258

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS 54
          GE+LAILGP+G GK+TL   L G LS     G +  N  PL+
Sbjct: 27 GEVLAILGPNGAGKSTLLKALSGELSPDS--GEVTLNGVPLN 66

Length = 259

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 47/174 (27%), Positives = 68/174 (39%), Gaps = 55/174 (31%)

Query: 4   KGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN--------- 51
           KG R VS     GE+L I+G SG GKTTL   + GRL+     G + Y            
Sbjct: 20  KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRDGQPRDLYT 77

Query: 52  ---PLSRTVKRKT-GFVAHSNVFYLHLTVT------ETLVFIA--------------LFR 87
                 R + R   GFV  +    L + V+      E L+ I               L  
Sbjct: 78  MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEE 137

Query: 88  LPI-----------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           + I                 +R+  A+ L+  P L+F+DEP  GLD ++  ++L
Sbjct: 138 VEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191

Length = 258

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 41/157 (26%), Positives = 60/157 (38%), Gaps = 48/157 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHS----- 67
           GE L ++G SG GK+T    L   L    ++G I ++  PL    +R+   V H      
Sbjct: 312 GETLGLVGESGSGKSTTGLAL---LRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVF 368

Query: 68  ---------------------NVFYLHLTVT--ETLVFIAL----------FRLPI---- 90
                                 V    L+    E  V   +           R P     
Sbjct: 369 QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428

Query: 91  ---KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
              +R++ A+ L++ PSL+ LDEP S LD T+  QIL
Sbjct: 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465

Length = 529

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 42/152 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFV- 64
           GE+  I+G SG GK+TL   +   L    T G++  +   L+       R +++K G + 
Sbjct: 32  GEIFGIIGYSGAGKSTLLRLIN-LLER-PTSGSVFVDGQDLTALSEAELRQLRQKIGMIF 89

Query: 65  ----------AHSNVFY-LHLT----------VTETLVFIALF----RLPI-------KR 92
                        NV + L L           V E L  + L     R P        +R
Sbjct: 90  QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQR 149

Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           V+ A+ L  NP +L  DE  S LD    + IL
Sbjct: 150 VAIARALANNPKILLCDEATSALDPETTQSIL 181

Length = 339

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 49/172 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTL--------GGRLSTGETRGNIDYNNNPL 53
           +L G+    + GE +A++GPSG GK+T+   L        G     GE   ++   N PL
Sbjct: 15  VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74

Query: 54  S-------RTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVS---RAQELL--- 100
                   R ++ K G V  S   + H TV + +    +  L + R     RA ELL   
Sbjct: 75  VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134

Query: 101 ----------------------------INPSLLFLDEPASGLDSTIAKQIL 124
                                       + P ++  DE  S LD  +  ++L
Sbjct: 135 GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 48/156 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSN 68
           GE+L ++GP+G GK+TL   + G L  G   G+I +   PL       + R   +++   
Sbjct: 22  GEILHLVGPNGAGKSTLLARMAG-LLPGS--GSIQFAGQPLEAWSAAELARHRAYLSQQQ 78

Query: 69  -------VF-YLHL---------TVTETLVFIA-LFRLPIK--------------RVSRA 96
                  VF YL L          V   L  +A    L  K              RV  A
Sbjct: 79  TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA 138

Query: 97  QELL-----INPS--LLFLDEPASGLDSTIAKQILL 125
             +L     INP+  LL LDEP + LD  +A+Q  L
Sbjct: 139 AVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAAL 172

Length = 248

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK--RKTGFVAHSNVF 70
           GE +A+LG SG GK+TL   L G L     +G I  +  P+S   K       V +   +
Sbjct: 28  GEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSDLEKALSSLISVLNQRPY 85

Query: 71  YLHLTVTETL--VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
               T+   L   F    R   +R++ A+ LL +  ++ LDEP  GLD    +Q+L
Sbjct: 86  LFDTTLRNNLGRRFSGGER---QRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 44/154 (28%), Positives = 62/154 (40%), Gaps = 42/154 (27%)

Query: 3   LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK---- 58
           LKGI      GE+ AILG +G GK+TL   L G L    + G I ++  P+  + K    
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMK 79

Query: 59  --RKTGFVAHSNVFYL-HLTVTETLVFIAL-FRLP------------------------- 89
                G V       L   +V + + F A+  +LP                         
Sbjct: 80  LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT 139

Query: 90  -------IKRVSRAQELLINPSLLFLDEPASGLD 116
                   KRV+ A  L++ P +L LDEP +GLD
Sbjct: 140 HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173

Length = 283

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 48/174 (27%), Positives = 69/174 (39%), Gaps = 55/174 (31%)

Query: 4   KGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-------- 52
           KG R VS     GE+L I+G SG GK+TL   L GRL+     G   Y            
Sbjct: 17  KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGAELELYQ 74

Query: 53  LSRTVKRKT-----GFVAHSNVFYLHLTVT------ETLVFIA--------------LFR 87
           LS   +R+      GFV  +    L + V+      E L+ I               L  
Sbjct: 75  LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE 134

Query: 88  LPI-----------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           + I                 +R+  A+ L+  P L+F+DEP  GLD ++  ++L
Sbjct: 135 VEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 46/164 (28%)

Query: 3   LKGIRGVSSLGELLAILGPSGRGKTTL---------PTTLGGRLSTGE--TRGNI----- 46
           L  I  ++     +A++GP+G GK+TL         PT+ G  L  GE  T+ NI     
Sbjct: 20  LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS-GSVLIRGEPITKENIREVRK 78

Query: 47  -------DYNNNPLSRTVKRKTGF-----------VAHSNVFYLHLTVTETLVFIALFRL 88
                  + ++   S TV++   F           VAH     LH+   E L      R+
Sbjct: 79  FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL----RDRV 134

Query: 89  P-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILL 125
           P        KRV+ A  + + P +L LDEP +GLD    K+++ 
Sbjct: 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178

Length = 277

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 39/147 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNIDYNNNPLSRTVKRKTGFVAHSNV 69
           GE +  +GPSG GK+TL   + G   +++G+   G    N+ P +   +R  G V  S  
Sbjct: 29  GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA---ERGVGMVFQSYA 85

Query: 70  FYLHLTVTETLVF------------------IA--------LFRLPI-------KRVSRA 96
            Y HL+V E + F                  +A        L R P        +RV+  
Sbjct: 86  LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145

Query: 97  QELLINPSLLFLDEPASGLDSTIAKQI 123
           + L+  PS+  LDEP S LD+ +  Q+
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDAALRVQM 172

Length = 369

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 52/176 (29%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-------NNPLS 54
           IL  +      G++ AI+G SG GK+TL   +G  L      G +  N       N+  +
Sbjct: 13  ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG--LLEKFDSGQVYLNGQETPPLNSKKA 70

Query: 55  RTVKR-KTGFVAHSNVFYL--HLTVTETL-VFIALFRLPIK------------------- 91
              +R K G++  +  F L  + TV E L + +   +L  K                   
Sbjct: 71  SKFRREKLGYLFQN--FALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL 128

Query: 92  -------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
                        RV+ A+ +L  P L+  DEP   LD     ++L     LN EG
Sbjct: 129 KQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 39/148 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRL---STGETRGNIDYNNNPLSRTVKRKTGFVAHSNV 69
           GE+ AI+GPSG GK+TL   + G     S       +D    P +    R    +   N 
Sbjct: 24  GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD---RPVSMLFQENN 80

Query: 70  FYLHLTVTETL-----------------VFIALFRLPI----------------KRVSRA 96
            + HLTV + +                 + +AL R+ +                +RV+ A
Sbjct: 81  LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140

Query: 97  QELLINPSLLFLDEPASGLDSTIAKQIL 124
           + L+ +  +L LDEP + LD  +  ++L
Sbjct: 141 RVLVRDKPVLLLDEPFAALDPALRAEML 168

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 45/162 (27%), Positives = 61/162 (37%), Gaps = 51/162 (31%)

Query: 5   GIRGVSSL------GELLAILGPSGRGKTTLPTTLGG--RLSTGET--RGNIDYNNNPLS 54
           G + ++ L      GEL  ++GP+G GKTTL   + G  R   GE    G+ D    P  
Sbjct: 17  GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEH 76

Query: 55  RTVKRKTGFVAHSNVFYLHLTVTETL---------VFIALF-RLPIKRVSRAQELLI--- 101
           R  +   G        + +LTV E L         VF +LF RL  +   R  ELL    
Sbjct: 77  RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIG 136

Query: 102 ----------------------------NPSLLFLDEPASGL 115
                                       +P LL LDEP +G+
Sbjct: 137 LGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178

Length = 249

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 47/155 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT----VKRKTGFVAH-S 67
           GE +AILGPSG GK+TL  TL G L     +G +  +  P+S      V+R+    A  +
Sbjct: 361 GERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVRRRVSVCAQDA 418

Query: 68  NVFYLHLTVTETLVFIA--------------------LFRLP------------------ 89
           ++F    TV E L                        L  LP                  
Sbjct: 419 HLF--DTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476

Query: 90  IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
            +R++ A+ LL +  +L LDEP   LD+  A ++L
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELL 511

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 37/141 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN---PLSRTVKRKTGFVAHSNV 69
           GE++ +LGP+G GKTT    + G +        ID  +    PL    +R  G++     
Sbjct: 29  GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS 88

Query: 70  FYLHLTVTETLVFIALFRLPI---KRVSRAQELL-------------------------- 100
            +  L+V + L+ +   R  +   +R  RA EL+                          
Sbjct: 89  IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEI 148

Query: 101 -----INPSLLFLDEPASGLD 116
                 NP  + LDEP +G+D
Sbjct: 149 ARALAANPKFILLDEPFAGVD 169

Length = 241

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 43/152 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV--------KRKTGFV 64
           GE++AI+G SG GK+TL   LGG L T  T G++ +N  P+S+           +K GF+
Sbjct: 35  GEMMAIVGSSGSGKSTLLHLLGG-LDT-PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFI 92

Query: 65  -----------AHSNVFY-----------LHLTVTETLVFIALFRLPI-----------K 91
                      A  NV             ++    E L  + L                +
Sbjct: 93  YQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ 152

Query: 92  RVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           RV+ A+ L+ NP L+  DEP   LD+  A  I
Sbjct: 153 RVAIARALVNNPRLVLADEPTGNLDARNADSI 184

Length = 233

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 45/202 (22%), Positives = 67/202 (33%), Gaps = 77/202 (38%)

Query: 1   MILKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRL--STGETRGNIDYNN----- 50
             LK +  VS   + GE +AI+G +G GKTT    L   L   TG       + +     
Sbjct: 18  TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI--EWIFKDEKNKK 75

Query: 51  -----------NPLSRTVKRKTGFV-------------AHSNVFYLHLTVTETLVF---- 82
                        + +T  +K   +             A   +F    T+ + ++F    
Sbjct: 76  KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF--EQTIEKDIIFGPVS 133

Query: 83  ---------------IALFRLPI---------------KRVSRAQELLINPSLLFLDEPA 112
                          I L  L                 +RV+ A  L + P  L  DEP 
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPT 193

Query: 113 SGLDSTIAKQIL-----LNSEG 129
           +GLD    K+IL     LN +G
Sbjct: 194 AGLDPQGVKEILEIFDNLNKQG 215

Length = 305

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 12/109 (11%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLG--GRLSTGETR---GNI-DYNNNPLSR 55
           +LKGI      GE++AI+G SG GK+TL   LG   + ++G  R    ++   + + L++
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82

Query: 56  TVKRKTGFVAHSNVFYLHLTVTETL----VFIALFRLPIKRVSRAQELL 100
             +   GF+        HLT  + +    V+  L R   +R+ RAQELL
Sbjct: 83  LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK--QRLLRAQELL 129

Length = 648

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 43/152 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-------VKRKTGFV- 64
           GE++ + GPSG GKTTL T +GG  S  E  G++      L          ++R  G++ 
Sbjct: 31  GEIVILTGPSGSGKTTLLTLIGGLRSVQE--GSLKVLGQELYGASEKELVQLRRNIGYIF 88

Query: 65  ----------AHSNV---FYLHLTVT---------ETLVFIAL-FRLPIK---------- 91
                     A  NV     L   ++           L  + L   L             
Sbjct: 89  QAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ 148

Query: 92  RVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           RV+ A+ L+  P L+  DEP + LDS   + +
Sbjct: 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDV 180

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 44/174 (25%), Positives = 62/174 (35%), Gaps = 55/174 (31%)

Query: 3   LKGIRGVS-SL--GELLAILGPSGRGKTTLPTTLGGRL--STGETR-GNIDYNNNPLSRT 56
           L  +  VS  +  GE++ ++GP+G GKTTL   + G    S+G       D    P  R 
Sbjct: 17  LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76

Query: 57  VKRKTG--FVAHSNVFYLHLTVTE--------TLVFIALFRLPIKR------VSRAQELL 100
            +      F   + +F   LTV E         L    L   P  R        RA+ELL
Sbjct: 77  ARLGIARTF-QITRLFP-GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELL 134

Query: 101 -------------------------------INPSLLFLDEPASGLDSTIAKQI 123
                                            P LL LDEPA+GL+    +++
Sbjct: 135 EFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188

Length = 250

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE++ I+GP G GKTTL   L   L              P    V    G      V   
Sbjct: 2   GEVILIVGPPGSGKTTLARALAREL-------------GPPGGGVIYIDGEDILEEVLDQ 48

Query: 73  HLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSL 132
            L +       +       R++ A    + P +L LDE  S LD+     +LL  E   L
Sbjct: 49  LLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108

Query: 133 H 133
            
Sbjct: 109 L 109

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 44/151 (29%), Positives = 59/151 (39%), Gaps = 37/151 (24%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TV 57
           ILK I      G +  I+GPSG GK+TL   L  RL    T G+I  +   +       +
Sbjct: 18  ILKDISVKFEGGAIYTIVGPSGAGKSTL-IKLINRL-IDPTEGSILIDGVDIKTIDVIDL 75

Query: 58  KRKTGFVAHSNVFYLHLTVTETLVF----------IALFRLPI----------------- 90
           +RK G V          TV + + +             + L I                 
Sbjct: 76  RRKIGMV-FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSG 134

Query: 91  ---KRVSRAQELLINPSLLFLDEPASGLDST 118
              +RVS A+ L  NP +L LDEP S LD T
Sbjct: 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPT 165

Length = 241

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 37/135 (27%)

Query: 17  AILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV--------KRKTGFVAHSN 68
           AI G SG GKT+L   + G L+  + +G I  N   L            KR+ G+V    
Sbjct: 28  AIFGRSGAGKTSLINAISG-LTRPQ-KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA 85

Query: 69  VFYLHLTVTETLVF------IALF--------------RLPI-------KRVSRAQELLI 101
             + H  V   L +      +A F              R P        +RV+  + LL 
Sbjct: 86  RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT 145

Query: 102 NPSLLFLDEPASGLD 116
            P LL +DEP + LD
Sbjct: 146 APELLLMDEPLASLD 160

Length = 352

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 37/139 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVF 70
           GE++AILGPSG GK+TL   + G  +     G I  N    + +   +R    +   N  
Sbjct: 25  GEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNL 82

Query: 71  YLHLTVTETL------------------------VFIALF--RLPI-------KRVSRAQ 97
           + HLTV + +                        V +A F  RLP        +RV+ A+
Sbjct: 83  FAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALAR 142

Query: 98  ELLINPSLLFLDEPASGLD 116
            L+    +L LDEP S LD
Sbjct: 143 CLVREQPILLLDEPFSALD 161

Length = 231

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 51/169 (30%)

Query: 1   MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL-------STGETR-GNIDYNNNP 52
            +LK +      G+ +AI+GPSG GK+T+      RL       S+G       D     
Sbjct: 15  PVLKDVSFTIPAGKKVAIVGPSGSGKSTI-----LRLLFRFYDVSSGSILIDGQDIREVT 69

Query: 53  LSRTVKRKTGFVAHS----------NVFYLHLTVTETLVFIA---------LFRLPIK-- 91
           L  +++R  G V             N+ Y     T+  V  A         + R P    
Sbjct: 70  LD-SLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYD 128

Query: 92  ----------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                           RV+ A+ +L NP +L LDE  S LD+   ++I 
Sbjct: 129 TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 56/161 (34%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKT---- 61
           G+ L ++G SG GK+TL   L   +    ++G I ++   +        R ++R+     
Sbjct: 313 GQTLGLVGESGSGKSTLGLALLRLI---PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVF 369

Query: 62  -------------------GFVAHSNVFYLHLT-------VTETLVFIAL-----FRLPI 90
                              G   H       L+       V E L  + L      R P 
Sbjct: 370 QDPYGSLSPRMTVGQIIEEGLRVHE----PKLSAAERDQRVIEALEEVGLDPATRNRYPH 425

Query: 91  -------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                  +R++ A+ L++ P L+ LDEP S LD ++  Q+L
Sbjct: 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466

Length = 534

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 60/172 (34%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTT-------LPTTLGGRLSTGETRGNIDYNNNPLS 54
           +L  I      GE++ I+GPSG GK+T       L     G L        +  N+  + 
Sbjct: 16  VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV----DGLKVNDPKVD 71

Query: 55  -RTVKRKTGFVAHSNVFYL--HLTVTETLVFIALFRLPIK-------------------- 91
            R ++++ G V     FYL  HLT  E ++F      P++                    
Sbjct: 72  ERLIRQEAGMVFQQ--FYLFPHLTALENVMF-----GPLRVRGASKEEAEKQARELLAKV 124

Query: 92  -------------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                              RV+ A+ L + P L+  DEP S LD  +  ++L
Sbjct: 125 GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176

Length = 240

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 45/163 (27%), Positives = 60/163 (36%), Gaps = 43/163 (26%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK--- 58
           IL G+  V   GE +A++G SG GK+TL   L G L  G + G +     PL +  +   
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAG-LDDGSS-GEVSLVGQPLHQMDEEAR 82

Query: 59  -----RKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSR--AQELLIN--------- 102
                +  GFV  S +    L   E +   AL R    R SR  A+ LL           
Sbjct: 83  AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH 142

Query: 103 ----------------------PSLLFLDEPASGLDSTIAKQI 123
                                 P +LF DEP   LD     +I
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI 185

Length = 228

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 45/158 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           +LK I      GE +AI+GP+G GKTTL   L         +G I  +   + R + RK+
Sbjct: 18  VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY--DPQKGQILIDGIDI-RDISRKS 74

Query: 62  -----GFVAHS----------NVFYLHLTVTETLVFIAL-------F--RLP-------- 89
                G V             N+       T+  V  A        F  +LP        
Sbjct: 75  LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG 134

Query: 90  ----------IKRVSRAQELLINPSLLFLDEPASGLDS 117
                      + ++ A+ +L +P +L LDE  S +D+
Sbjct: 135 ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTG--------ETRGNIDYNNNPLSRTVKR---KT 61
           GE++A+LGPSG GK+TL   L G L TG        E  G        L+R +++    T
Sbjct: 30  GEMVALLGPSGSGKSTLLRHLSG-LITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRLPIKR 92
           G++         L+V E ++  AL   P  R
Sbjct: 89  GYIFQQFNLVNRLSVLENVLIGALGSTPFWR 119

Length = 262

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 43/151 (28%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKT-GFV 64
           GE+  I+G SG GK+TL   +   +    T G +  +   ++       R ++RK    V
Sbjct: 50  GEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMV 107

Query: 65  AHSNVFYLHLTVTETLVF-------------------IALF-------RLP-------IK 91
             S     H TV E + F                   + L        + P        +
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQ 167

Query: 92  RVSRAQELLINPSLLFLDEPASGLDSTIAKQ 122
           RV  A+ L ++P +L +DE  S LD  I ++
Sbjct: 168 RVGLARALAVDPDILLMDEAFSALDPLIRRE 198

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 46/156 (29%)

Query: 14  ELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYN-NNPLSRTV-----KRKTGFV 64
           E+ AI+GPSG GK+T   TL   +      +  G ++YN +N L   V     ++  G V
Sbjct: 39  EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMV 98

Query: 65  AHS----------NVFY------------LHLTVTETLVFIALF-----RLPI------- 90
                        NV Y            L   V ++L  +AL+     RL         
Sbjct: 99  FQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG 158

Query: 91  ---KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
              +R+  A+ L  NP +L +DEP S LD    ++I
Sbjct: 159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194

Length = 259

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 39/162 (24%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTL------------------------PTTLGGRL 37
           IL GI     LG+ +AI+G SG GK+T+                         T    R 
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337

Query: 38  STG----------ETRG-NIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTV-TETLVFIAL 85
           + G          +T   NI Y     +          A  + F   L    +T V    
Sbjct: 338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397

Query: 86  FRLPI---KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
            +L     +RV+ A+ +L NP +L LDE  S LD+   + I 
Sbjct: 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439

Length = 497

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.97
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.97
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.97
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.97
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.97
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.97
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.97
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.97
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.97
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.96
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.96
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.96
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.96
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.96
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.96
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.96
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.96
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.96
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.96
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.96
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.96
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.96
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.96
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.96
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.96
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.96
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.96
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.96
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.96
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.96
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.96
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.96
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.96
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.96
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.96
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.96
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.96
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.96
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.96
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.96
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.96
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.96
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.96
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.96
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.96
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.95
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.95
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.95
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.95
PRK10908	222	cell division protein FtsE; Provisional	99.95
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.95
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.95
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.95
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.95
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.95
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.95
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.95
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.95
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.95
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.95
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.95
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.95
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.95
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.95
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.95
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.95
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.95
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.95
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.95
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.95
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.95
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.95
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.95
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.95
cd03246	173	ABCC_Protease_Secretion This family represents the	99.95
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.95
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.95
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.95
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.95
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.95
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.95
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.95
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.95
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.95
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.95
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.95
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.95
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.95
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.95
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.95
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.95
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.95
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.95
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.95
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.95
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.94
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.94
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.94
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.94
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.94
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.94
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.94
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.94
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.94
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.94
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.94
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.94
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.94
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.94
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.94
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.94
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.94
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.94
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.94
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.94
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.94
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.94
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.94
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.94
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.94
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.94
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.94
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.94
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.94
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.94
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.94
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.94
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.94
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.94
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.94
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.94
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.94
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.94
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.94
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.94
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.94
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.94
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.94
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.94
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.94
COG4988	559	CydD ABC-type transport system involved in cytochr	99.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.94
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.94
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.94
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.94
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.94
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.94
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.94
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.94
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.94
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.94
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.94
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.94
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.93
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.93
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.93
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.93
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.93
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.93
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.93
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.93
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.93
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.93
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.93
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.93
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.93
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.93
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.93
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.93
COG4559	259	ABC-type hemin transport system, ATPase component	99.93
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.93
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.93
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.93
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.93
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.93
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.93
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.93
COG4181	228	Predicted ABC-type transport system involved in ly	99.93
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.93
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.93
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.93
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.93
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.93
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.93
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.93
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.93
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.93
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.92
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.92
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.92
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.92
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.92
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.92
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.92
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.92
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.92
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.92
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.92
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
COG4987	573	CydC ABC-type transport system involved in cytochr	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.92
COG1123	539	ATPase components of various ABC-type transport sy	99.91
PLN03232	1495	ABC transporter C family member; Provisional	99.91
PLN03130	1622	ABC transporter C family member; Provisional	99.91
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.91
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.91
PRK10938	490	putative molybdenum transport ATP-binding protein	99.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.91
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.91
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.91
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.91
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.91
COG1123	539	ATPase components of various ABC-type transport sy	99.91
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.91
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.9
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.9
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.9
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.9
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.9
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.9
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
PTZ00243	1560	ABC transporter; Provisional	99.9
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.9
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.9
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.9
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.9
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.9
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.89
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.89
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.89
COG4172	534	ABC-type uncharacterized transport system, duplica	99.89
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.89
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.89
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.89
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.89
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.89
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.89
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.88
PRK10938	490	putative molybdenum transport ATP-binding protein	99.88
PRK13409	590	putative ATPase RIL; Provisional	99.88
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.88
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.88
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.88
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.88
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.87
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.87
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.87
PRK11147	635	ABC transporter ATPase component; Reviewed	99.87
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.87
PLN03232	1495	ABC transporter C family member; Provisional	99.87
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.87
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.87
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.87
PLN03130	1622	ABC transporter C family member; Provisional	99.86
PLN03073	718	ABC transporter F family; Provisional	99.86
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.86
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.85
PTZ00243	1560	ABC transporter; Provisional	99.85
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.84
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.84
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.84
PRK11147	635	ABC transporter ATPase component; Reviewed	99.84
PRK13409	590	putative ATPase RIL; Provisional	99.83
COG0488	530	Uup ATPase components of ABC transporters with dup	99.81
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.81
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.8
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.79
COG4172	534	ABC-type uncharacterized transport system, duplica	99.79
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.77
PLN03073	718	ABC transporter F family; Provisional	99.76
COG0488	530	Uup ATPase components of ABC transporters with dup	99.75
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.74
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.73
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.71
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.71
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.68
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.67
COG4178	604	ABC-type uncharacterized transport system, permeas	99.67
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.66
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.64
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.63
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.59
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.58
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.54
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.53
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.51
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.49
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.49
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.47
KOG0062	582	consensus ATPase component of ABC transporters wit	99.47
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.43
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.42
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.42
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.42
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.41
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.39
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.38
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.37
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.36
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.33
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.33
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.27
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.26
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.25
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.25
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.19
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.19
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.18
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.17
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.17
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.12
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.11
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.09
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.07
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.07
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.07
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.04
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.01
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	98.98
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.93
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.91
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.9
KOG0062	582	consensus ATPase component of ABC transporters wit	98.88
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.87
PRK00064	361	recF recombination protein F; Reviewed	98.81
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.8
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.8
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.75
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.73
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	98.69
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.66
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.63
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.63
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.61
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.59
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	98.55
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.46
PRK14079	349	recF recombination protein F; Provisional	98.45
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.4
TIGR00611	365	recf recF protein. All proteins in this family for	98.38
PRK09825	176	idnK D-gluconate kinase; Provisional	98.37
COG3910	233	Predicted ATPase [General function prediction only	98.36
smart00382	148	AAA ATPases associated with a variety of cellular	98.33
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.33
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.27
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.25
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	98.23
PRK13695	174	putative NTPase; Provisional	98.23
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.22
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.21
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.16
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.1
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.09
PRK01889	356	GTPase RsgA; Reviewed	98.08
PRK10416	318	signal recognition particle-docking protein FtsY;	98.08
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.08
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.07
cd01128	249	rho_factor Transcription termination factor rho is	98.07
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.06
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.05
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.04
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.01
PRK15066	257	inner membrane transport permease; Provisional	98.0
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.99
PRK09862	506	putative ATP-dependent protease; Provisional	97.95
PRK08149	428	ATP synthase SpaL; Validated	97.94
PRK03846	198	adenylylsulfate kinase; Provisional	97.93
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	97.91
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.9
PRK00300	205	gmk guanylate kinase; Provisional	97.85
PLN02796	347	D-glycerate 3-kinase	97.84
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	97.83
COG0842	286	ABC-type multidrug transport system, permease comp	97.8
PRK11545	163	gntK gluconate kinase 1; Provisional	97.79
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	97.79
PRK06067	234	flagellar accessory protein FlaH; Validated	97.78
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.75
PLN02318	656	phosphoribulokinase/uridine kinase	97.74
PRK09099	441	type III secretion system ATPase; Provisional	97.74
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.73
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.72
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.71
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.7
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	97.7
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.69
PRK07594	433	type III secretion system ATPase SsaN; Validated	97.68
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.68
PRK05480	209	uridine/cytidine kinase; Provisional	97.67
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.67
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.67
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.63
PRK00098	298	GTPase RsgA; Reviewed	97.62
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.61
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.59
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.57
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.56
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.56
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.55
PRK13851	344	type IV secretion system protein VirB11; Provision	97.55
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.52

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.1e-76  Score=626.10  Aligned_cols=405  Identities=35%  Similarity=0.567  Sum_probs=326.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      ++|+||||+++|||++|||||||||||||||+|+|+...+ ..+|+|++||++.+. .+++.+|||.|||.++|++||+|
T Consensus        44 ~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~E  123 (613)
T KOG0061|consen   44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRE  123 (613)
T ss_pred             eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHH
Confidence            4899999999999999999999999999999999998764 789999999977654 67888999999999999999999


Q ss_pred             HHHHHHHcCCch-----------------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           79 TLVFIALFRLPI-----------------------------------------KRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        79 ~l~f~~~~~~~~-----------------------------------------krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +|.|++.+|+|.                                         |||+||.||++||++|+|||||||||+
T Consensus       124 tL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS  203 (613)
T KOG0061|consen  124 TLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS  203 (613)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence            999999998873                                         899999999999999999999999999


Q ss_pred             HHHHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308          118 TIAKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA  165 (413)
Q Consensus       118 ~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~  165 (413)
                      .+|.++                                ++|++|+++|+|+++++.+||+++||+||+..|||||++|+.
T Consensus       204 ~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~  283 (613)
T KOG0061|consen  204 FSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLL  283 (613)
T ss_pred             hhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHH
Confidence            999877                                689999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCcchH--HHHHHHHHHHHhhhHHHHHHHHHhhccCCCCCCCCCCCCCcCCCHHHHHHHHHHHhhhc--c-cc
Q 048308          166 NGVVSGDPKDDQK--ALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQ--S-SS  240 (413)
Q Consensus       166 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~--~-~~  240 (413)
                      +++   ++.+...  .......+.++.  .+...+......+...  ...+.......+||.|+.+|++|.+++  | +.
T Consensus       284 s~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~  356 (613)
T KOG0061|consen  284 SVD---SGTRELEEAVRIAKLINKFSQ--TDNLKKTLEALEKSLS--TSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPS  356 (613)
T ss_pred             ccC---CCchhHHhHHHHHHHhhhccc--cchhhhhHHHHhhhcc--cccccccccCCcHHHHHHHHHHHHhHHHhhcHH
Confidence            865   1111111  111112222220  0000110000000000  001111112789999999999999988  3 66


Q ss_pred             hhHhhhhhcc-------------ccChHHHHH----HHhh-------------hhc--------------ccchHHHHHH
Q 048308          241 FCGSKLLSQL-------------TSHRIHIIN----SHIC-------------YCF--------------NFRLSSYFVA  276 (413)
Q Consensus       241 ~~~~~~~~~i-------------~~~~~~~~~----~f~~-------------~~f--------------~Y~~~ay~lA  276 (413)
                      +...|+++.+             +.+..++++    +|+.             ..|              +|+.++|++|
T Consensus       357 ~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la  436 (613)
T KOG0061|consen  357 LLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLA  436 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHH
Confidence            6677777766             334455555    1111             111              8999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh----
Q 048308          277 KTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL----  341 (413)
Q Consensus       277 ~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~----  341 (413)
                      ++++++|+.++.+++|++|+|||+||+++..+           .++++++|+++|++.||...|++++++++++|+    
T Consensus       437 ~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G  516 (613)
T KOG0061|consen  437 KTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGG  516 (613)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhh
Confidence            99999999999999999999999999999977           467899999999999999999999999988876    


Q ss_pred             ----hccCcchhhhhhccCHHHHHHHHHHHhhcCC--CCc-------c---------cCC--CCChHHHHHHHHHHHHHH
Q 048308          342 ----LQRLPVFTSWFEYASLTYYSYRLLLPSQYKA--NDT-------C---------YAG--LSHQIICVAALAVMLLGS  397 (413)
Q Consensus       342 ----~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~--~~~-------~---------~~~--~~~~~~~~~il~~~~~~~  397 (413)
                          .++||+||+|++|+||++|+|||+++|||++  .++       +         .++  ..+.|.|+.++.+++++|
T Consensus       517 ~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~  596 (613)
T KOG0061|consen  517 FFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFF  596 (613)
T ss_pred             hhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHH
Confidence                4699999999999999999999999999995  111       1         233  357899999999999999


Q ss_pred             HHHHHHHHHhhcccC
Q 048308          398 RLAAYDALMGIGRIS  412 (413)
Q Consensus       398 ~~l~~~~L~~~~~~~  412 (413)
                      |+++|++|++..|+.
T Consensus       597 ~il~y~~L~~~~~~~  611 (613)
T KOG0061|consen  597 RVLGYLALRFRVKRK  611 (613)
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999865543

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.4e-74  Score=619.75  Aligned_cols=410  Identities=43%  Similarity=0.730  Sum_probs=325.6

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|+|+|++++|||+++|+||||||||||+|+|+|+.+++..+|+|.+||++..+..++.++||+|++.+++.+||+||+
T Consensus        82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l  161 (659)
T PLN03211         82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETL  161 (659)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHH
Confidence            38999999999999999999999999999999999987544689999999987655556799999999999999999999


Q ss_pred             HHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           81 VFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        81 ~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      .|++.++++                                         +||++||++|+.+|++++|||||+|||+.+
T Consensus       162 ~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~  241 (659)
T PLN03211        162 VFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA  241 (659)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHH
Confidence            997654321                                         189999999999999999999999999999


Q ss_pred             HHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308          120 AKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG  167 (413)
Q Consensus       120 ~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~  167 (413)
                      +.++                                ++|++|+++|.|+++++.+||+++|++||++.|||||++++.++
T Consensus       242 ~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~  321 (659)
T PLN03211        242 AYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANG  321 (659)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCc
Confidence            9877                                47789999999999999999999999999999999999999876


Q ss_pred             ccCCCC--CcchHHHHHHHHHHHHhhhHHHHHHHHHhh--ccCCC------CCCCC-CCCCCcCCCHHHHHHHHHHHhhh
Q 048308          168 VVSGDP--KDDQKALKETLISAYKSNLSEKLKASFQEV--GDHSL------IGPGN-KKNSNWSTTWWQQSSELLKRNFR  236 (413)
Q Consensus       168 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~-~~~~~~~~~~~~Q~~~l~~R~~~  236 (413)
                      ......  +.+.+...+.+.+.|++...++..+.++..  .....      ..... .....+.++||+|+.+|++|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~  401 (659)
T PLN03211        322 VCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLK  401 (659)
T ss_pred             cccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHH
Confidence            432111  111122234455566543222222221110  00000      00000 01123457899999999999998


Q ss_pred             cc--cchhHhhhhhcc-----------ccChHHHHH-----HHhh------------hhc--------------ccchHH
Q 048308          237 QS--SSFCGSKLLSQL-----------TSHRIHIIN-----SHIC------------YCF--------------NFRLSS  272 (413)
Q Consensus       237 ~~--~~~~~~~~~~~i-----------~~~~~~~~~-----~f~~------------~~f--------------~Y~~~a  272 (413)
                      ++  +.+...|+++.+           +.+..++++     ||.+            ..|              +|++++
T Consensus       402 ~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~  481 (659)
T PLN03211        402 ERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSS  481 (659)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHH
Confidence            73  555567777665           445566676     2221            011              899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 048308          273 YFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL  341 (413)
Q Consensus       273 y~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~  341 (413)
                      |++|++++|+|+.++.+++|++|+|||+||++++.+           .++++++|+++|+++||+.+|+.++|+++++++
T Consensus       482 Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~  561 (659)
T PLN03211        482 YFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFV  561 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887           467899999999999999999999999998877


Q ss_pred             ------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc------c-----------------cCCCCChHHHHHHHHH
Q 048308          342 ------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT------C-----------------YAGLSHQIICVAALAV  392 (413)
Q Consensus       342 ------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~------~-----------------~~~~~~~~~~~~il~~  392 (413)
                            .++||+||+|++|+||++|+|||++.|||++.+.      |                 .++..+.|.|+++|++
T Consensus       562 lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~  641 (659)
T PLN03211        562 LTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIF  641 (659)
T ss_pred             HHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHH
Confidence                  5799999999999999999999999999976421      1                 1122357999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 048308          393 MLLGSRLAAYDALMGIGR  410 (413)
Q Consensus       393 ~~~~~~~l~~~~L~~~~~  410 (413)
                      ++++||+++|++|+++++
T Consensus       642 ~~~~~~~l~~~~L~~~~~  659 (659)
T PLN03211        642 MFVGYRLLAYLALRRIKH  659 (659)
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            999999999999987653

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=3e-71  Score=592.45  Aligned_cols=409  Identities=29%  Similarity=0.511  Sum_probs=326.0

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      ++|+|+|++++|||+++|+||||||||||||+|+|+.+++ ..+|+|.+||.+.+. ..++.++||+|+|.+++++||+|
T Consensus        39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e  118 (617)
T TIGR00955        39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE  118 (617)
T ss_pred             ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH
Confidence            3899999999999999999999999999999999998653 368999999998763 56778999999999999999999


Q ss_pred             HHHHHHHcCCc------------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           79 TLVFIALFRLP------------------------------------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        79 ~l~f~~~~~~~------------------------------------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      ||.|++.++++                                          +||++||++|+.+|++++|||||+|||
T Consensus       119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD  198 (617)
T TIGR00955       119 HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD  198 (617)
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchh
Confidence            99998765432                                          189999999999999999999999999


Q ss_pred             HHHHHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308          117 STIAKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL  164 (413)
Q Consensus       117 ~~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~  164 (413)
                      +.++.++                                ++|++|+++|+|+++++.+||+++|++||+..|||||++++
T Consensus       199 ~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~  278 (617)
T TIGR00955       199 SFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV  278 (617)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHH
Confidence            9999887                                57889999999999999999999999999999999999999


Q ss_pred             hCCccCCCCCcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccC--CC-CCCCCCCCCCcCCCHHHHHHHHHHHhhhc--c
Q 048308          165 ANGVVSGDPKDDQKALKETLISAYKSN-LSEKLKASFQEVGDH--SL-IGPGNKKNSNWSTTWWQQSSELLKRNFRQ--S  238 (413)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~--~  238 (413)
                      .+.....  +....+..+++.+.|++. ..++..++.......  .. ...+..+...+..+|++|+..|++|++++  |
T Consensus       279 ~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R  356 (617)
T TIGR00955       279 LAVIPGS--ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLR  356 (617)
T ss_pred             hhcCccc--ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhc
Confidence            8753221  111223334455555442 222222222211110  00 00111122456789999999999999987  3


Q ss_pred             -cchhHhhhhhcc-------------ccChHHHHH----HHhh-------------h-------hc-------ccchHHH
Q 048308          239 -SSFCGSKLLSQL-------------TSHRIHIIN----SHIC-------------Y-------CF-------NFRLSSY  273 (413)
Q Consensus       239 -~~~~~~~~~~~i-------------~~~~~~~~~----~f~~-------------~-------~f-------~Y~~~ay  273 (413)
                       +.....|+++.+             +.+..++++    +|+.             .       +|       +|++++|
T Consensus       357 ~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y  436 (617)
T TIGR00955       357 DPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAY  436 (617)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHH
Confidence             445555554444             345566665    1211             0       11       8999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-
Q 048308          274 FVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL-  341 (413)
Q Consensus       274 ~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~-  341 (413)
                      ++|++++|+|+.++.+++|++|+|||+||++++.+           .+++.++|+++++++|+..+|+.++++++++++ 
T Consensus       437 ~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l  516 (617)
T TIGR00955       437 FLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL  516 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999876           346788999999999999999999999988876 


Q ss_pred             -------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-----------c---------cCCC--CChHHHHHHHHH
Q 048308          342 -------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT-----------C---------YAGL--SHQIICVAALAV  392 (413)
Q Consensus       342 -------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~-----------~---------~~~~--~~~~~~~~il~~  392 (413)
                             .++||+||+|++|+||++|++||++.|||.+...           |         .+|+  ++.|.|++++++
T Consensus       517 f~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~  596 (617)
T TIGR00955       517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVI  596 (617)
T ss_pred             HhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHH
Confidence                   5899999999999999999999999999987432           1         2333  468999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 048308          393 MLLGSRLAAYDALMGIGRI  411 (413)
Q Consensus       393 ~~~~~~~l~~~~L~~~~~~  411 (413)
                      +.++|++++|++||+..|.
T Consensus       597 ~~~~~~~l~~~~L~~~~~~  615 (617)
T TIGR00955       597 LIFFFRLLAYFALRIRIRR  615 (617)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999985443

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=4.3e-70  Score=623.58  Aligned_cols=409  Identities=22%  Similarity=0.263  Sum_probs=326.0

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +||+|+||.++|||+++|+||||||||||||+|+|++++. ..+|+|.+||++..+ ..++.++||+|+|.|++++||+|
T Consensus       179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E  258 (1470)
T PLN03140        179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE  258 (1470)
T ss_pred             eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence            3899999999999999999999999999999999998753 468999999998754 23567999999999999999999


Q ss_pred             HHHHHHHcC-----------------------------------------------------Cc----------------
Q 048308           79 TLVFIALFR-----------------------------------------------------LP----------------   89 (413)
Q Consensus        79 ~l~f~~~~~-----------------------------------------------------~~----------------   89 (413)
                      ||.|++.++                                                     +.                
T Consensus       259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS  338 (1470)
T PLN03140        259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS  338 (1470)
T ss_pred             HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence            999976432                                                     10                


Q ss_pred             ---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---------------------------------HHhcCCcEEE
Q 048308           90 ---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---------------------------------LLNSEGNSLH  133 (413)
Q Consensus        90 ---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---------------------------------~ll~~G~~v~  133 (413)
                         +|||+||++|+.+|+++||||||+|||+.++.++                                 ++|++|+++|
T Consensus       339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy  418 (1470)
T PLN03140        339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY  418 (1470)
T ss_pred             cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEE
Confidence               1899999999999999999999999999999887                                 5788999999


Q ss_pred             ecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC----C-CcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccCC
Q 048308          134 VGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD----P-KDDQKALKETLISAYKSN-LSEKLKASFQEVGDHS  207 (413)
Q Consensus       134 ~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  207 (413)
                      +|+++++.+||+++||.||++.|||||++++++......    . .+.+....+++.++|++. ..+++.++++.+.+..
T Consensus       419 ~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  498 (1470)
T PLN03140        419 QGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKS  498 (1470)
T ss_pred             eCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999999999999987532110    0 000112345677788763 3344444443322211


Q ss_pred             CCCCCCCCCCCcCCCHHHHHHHHHHHhhhc--c-cchhHhhhhhcc-----------cc--C---hHHHHH-----HHhh
Q 048308          208 LIGPGNKKNSNWSTTWWQQSSELLKRNFRQ--S-SSFCGSKLLSQL-----------TS--H---RIHIIN-----SHIC  263 (413)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~--~-~~~~~~~~~~~i-----------~~--~---~~~~~~-----~f~~  263 (413)
                      ...+...+.++|..+++.|++.|++|+++.  | +.....|+++.+           +.  +   ..+.+.     ||..
T Consensus       499 ~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~  578 (1470)
T PLN03140        499 QSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSM  578 (1470)
T ss_pred             hcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHH
Confidence            111112234568899999999999999987  3 555556666554           11  1   111111     2211


Q ss_pred             ------------------hhc-------ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH----------
Q 048308          264 ------------------YCF-------NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW----------  308 (413)
Q Consensus       264 ------------------~~f-------~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~----------  308 (413)
                                        .+|       +|++++|++|++++|+|+.++.+++|++|+|||+||++++++          
T Consensus       579 l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l  658 (1470)
T PLN03140        579 IINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFL  658 (1470)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHH
Confidence                              011       799999999999999999999999999999999999999988          


Q ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc----
Q 048308          309 -LIKPQSIRLAIGAVLMKQKVASTITATIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT----  375 (413)
Q Consensus       309 -~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~----  375 (413)
                       .++++++++++++++|++.+|+.++++++++++        .++||+||+|++|+||++|||||++.|||.+.++    
T Consensus       659 ~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~  738 (1470)
T PLN03140        659 IQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKM  738 (1470)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcc
Confidence             346788999999999999999999999988876        5899999999999999999999999999976431    


Q ss_pred             c-------------cCCC--CC--hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048308          376 C-------------YAGL--SH--QIICVAALAVMLLGSRLAAYDALMGIG  409 (413)
Q Consensus       376 ~-------------~~~~--~~--~~~~~~il~~~~~~~~~l~~~~L~~~~  409 (413)
                      |             .+|+  ++  .|+|+++|++++++|+++++++|++++
T Consensus       739 ~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~  789 (1470)
T PLN03140        739 ASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN  789 (1470)
T ss_pred             cCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            0             2333  23  499999999999999999999999876

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.7e-69  Score=619.81  Aligned_cols=410  Identities=21%  Similarity=0.284  Sum_probs=326.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEEEECCcccCh---hccccEEEEecCCccCCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--GETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lT   75 (413)
                      +||+|+|+.++|||+++|+||||||||||||+|+|+.+.  .+.+|+|.+||.+..+   ..++.++||+|+|.+++++|
T Consensus        75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT  154 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT  154 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence            389999999999999999999999999999999999742  2478999999987643   34556999999999999999


Q ss_pred             HHHHHHHHHHcCCc----------------------------------------------hhHHHHHHHHhhCCCEEEEe
Q 048308           76 VTETLVFIALFRLP----------------------------------------------IKRVSRAQELLINPSLLFLD  109 (413)
Q Consensus        76 v~e~l~f~~~~~~~----------------------------------------------~krvsia~~l~~~p~llllD  109 (413)
                      |+||+.|++.++.|                                              +|||+||++|+.+|++++||
T Consensus       155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD  234 (1394)
T TIGR00956       155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD  234 (1394)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence            99999998654321                                              18999999999999999999


Q ss_pred             CCCCCCCHHHHHHH---------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCC
Q 048308          110 EPASGLDSTIAKQI---------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMN  156 (413)
Q Consensus       110 EPtsgLD~~~~~~i---------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n  156 (413)
                      |||+|||+.++.++                                 ++|++|+++|+|+++++.+||+++||+||++.|
T Consensus       235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n  314 (1394)
T TIGR00956       235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQT  314 (1394)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999877                                 478899999999999999999999999999999


Q ss_pred             hhHHHHHhhCCccCC---CCCcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccC---------------CCCCCCCCCCC
Q 048308          157 PSDFLLDLANGVVSG---DPKDDQKALKETLISAYKSN-LSEKLKASFQEVGDH---------------SLIGPGNKKNS  217 (413)
Q Consensus       157 ~ad~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~  217 (413)
                      ||||++++++.+...   ..+...+...+++.++|++. ..++..++++...+.               ..........+
T Consensus       315 ~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (1394)
T TIGR00956       315 TADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSS  394 (1394)
T ss_pred             hHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCC
Confidence            999999998743211   10111122345667777652 223333332221100               00001112234


Q ss_pred             CcCCCHHHHHHHHHHHhhhc--c-cchhHhhhhhcc-------------ccChHHHHH----HHhhh-------------
Q 048308          218 NWSTTWWQQSSELLKRNFRQ--S-SSFCGSKLLSQL-------------TSHRIHIIN----SHICY-------------  264 (413)
Q Consensus       218 ~~~~~~~~Q~~~l~~R~~~~--~-~~~~~~~~~~~i-------------~~~~~~~~~----~f~~~-------------  264 (413)
                      ++..++|+|+++|++|++++  | +.....|+++.+             +.+..++++    +|++.             
T Consensus       395 ~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~  474 (1394)
T TIGR00956       395 PYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIAS  474 (1394)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999987  3 555566665554             345566666    22220             


Q ss_pred             ------hc-------ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHH
Q 048308          265 ------CF-------NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIG  320 (413)
Q Consensus       265 ------~f-------~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~  320 (413)
                            +|       +|++++|++|++++|+|+.++.+++|++|+|||+||++++++           .+++.++++++|
T Consensus       475 ~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~  554 (1394)
T TIGR00956       475 MYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIG  554 (1394)
T ss_pred             HHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  11       799999999999999999999999999999999999999987           346778999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-----------------
Q 048308          321 AVLMKQKVASTITATIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT-----------------  375 (413)
Q Consensus       321 a~~~~~~~A~~i~~~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~-----------------  375 (413)
                      +++||+++|+.++++++++++        .++||+||+|++|+||++|+|||++.|||.+..+                 
T Consensus       555 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~  634 (1394)
T TIGR00956       555 AVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGV  634 (1394)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCc
Confidence            999999999999999988776        5899999999999999999999999999976321                 


Q ss_pred             ----c--------------------cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308          376 ----C--------------------YAGL--SHQIICVAALAVMLLGSRLAAYDALMGIGR  410 (413)
Q Consensus       376 ----~--------------------~~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~~~~  410 (413)
                          |                    .+++  ++.|+|++++++++++|++++++++++++.
T Consensus       635 ~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~  695 (1394)
T TIGR00956       635 TNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG  695 (1394)
T ss_pred             cCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                1                    1222  468999999999999999999999998764

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.7e-68  Score=610.48  Aligned_cols=404  Identities=24%  Similarity=0.353  Sum_probs=324.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +|+||||+++|||+++||||||||||||||+|+|+.+++..+|+|.+||.+..+ ..++.++||+|+|.+++.+||+|+|
T Consensus       895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L  974 (1470)
T PLN03140        895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL  974 (1470)
T ss_pred             EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence            799999999999999999999999999999999997755688999999987653 4567799999999999999999999


Q ss_pred             HHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           81 VFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        81 ~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      .|++.+++|                                         +||++||++|+.+|++|||||||+|||+.+
T Consensus       975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140        975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence            998755431                                         189999999999999999999999999999


Q ss_pred             HHHH--------------------------------HHhcC-CcEEEecCc----chHhHHHHhc-CC-CCCCCCChhHH
Q 048308          120 AKQI--------------------------------LLNSE-GNSLHVGKG----DGVMSYFVGI-GF-EPSAAMNPSDF  160 (413)
Q Consensus       120 ~~~i--------------------------------~ll~~-G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~n~ad~  160 (413)
                      +..+                                ++|++ |+++|+|+.    +++.+||+++ |+ .||+..|||||
T Consensus      1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~ 1134 (1470)
T PLN03140       1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134 (1470)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhh
Confidence            9877                                36665 899999996    6899999998 66 49999999999


Q ss_pred             HHHhhCCccCCCCCcchHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCCCCCCCCCCCCcCCCHHHHHHHHHHHhhhc--
Q 048308          161 LLDLANGVVSGDPKDDQKALKETLISAYKS-NLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKRNFRQ--  237 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~--  237 (413)
                      ++++.+.....       ....++.+.|++ ...++..+.+++.........+....+++..++|+|+.+|++|++++  
T Consensus      1135 ~l~v~~~~~~~-------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~ 1207 (1470)
T PLN03140       1135 MLEVSSLAAEV-------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYW 1207 (1470)
T ss_pred             hhhhhcccccc-------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHH
Confidence            99997632110       112245666665 23333333333322211111111123467899999999999999987  


Q ss_pred             c-cchhHhhhhhcc-------------ccCh---HHHHH----HHhh-----h--------h-------c-------ccc
Q 048308          238 S-SSFCGSKLLSQL-------------TSHR---IHIIN----SHIC-----Y--------C-------F-------NFR  269 (413)
Q Consensus       238 ~-~~~~~~~~~~~i-------------~~~~---~~~~~----~f~~-----~--------~-------f-------~Y~  269 (413)
                      | +.+...|+++.+             +++.   .++++    +|.+     +        +       |       +|+
T Consensus      1208 R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~ 1287 (1470)
T PLN03140       1208 RSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYS 1287 (1470)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            3 677777777655             2222   34444    2211     0        1       1       899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308          270 LSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVL  338 (413)
Q Consensus       270 ~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~  338 (413)
                      +++|++|++++|+|+.++.+++|++|+|||+||++++..           .+++.++|+++++++||.++|+.+++++++
T Consensus      1288 ~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~ 1367 (1470)
T PLN03140       1288 ALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYG 1367 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988876           356788999999999999999999999988


Q ss_pred             HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc---------------c---cCCC--CChHHHHHHH
Q 048308          339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT---------------C---YAGL--SHQIICVAAL  390 (413)
Q Consensus       339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~---------------~---~~~~--~~~~~~~~il  390 (413)
                      +++        .++||+||+|++|+||++|+++||+.|||++...               |   .+|+  ++.|++++++
T Consensus      1368 ~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il 1447 (1470)
T PLN03140       1368 LFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVL 1447 (1470)
T ss_pred             HHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhH
Confidence            876        5899999999999999999999999999987432               0   2343  5679999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccC
Q 048308          391 AVMLLGSRLAAYDALMGIGRIS  412 (413)
Q Consensus       391 ~~~~~~~~~l~~~~L~~~~~~~  412 (413)
                      +++.++|++++++++++++..+
T Consensus      1448 ~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140       1448 VGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999987654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.2e-68  Score=580.22  Aligned_cols=402  Identities=24%  Similarity=0.378  Sum_probs=330.4

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      ++|+||||.++||.++||||+||||||||||+||||...|.++|+|.+||.|.+ +.++|.+|||+|+|.|.+.+||||.
T Consensus       805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrES  884 (1391)
T KOG0065|consen  805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRES  884 (1391)
T ss_pred             EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHH
Confidence            489999999999999999999999999999999999887889999999999998 6889999999999999999999999


Q ss_pred             HHHHHHcCCch----------------------------------------hHHHHHHHHhhCC-CEEEEeCCCCCCCHH
Q 048308           80 LVFIALFRLPI----------------------------------------KRVSRAQELLINP-SLLFLDEPASGLDST  118 (413)
Q Consensus        80 l~f~~~~~~~~----------------------------------------krvsia~~l~~~p-~llllDEPtsgLD~~  118 (413)
                      |+|+|.+|+|.                                        ||++||+||+.+| .||||||||||||+.
T Consensus       885 L~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsq  964 (1391)
T KOG0065|consen  885 LRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQ  964 (1391)
T ss_pred             HHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHH
Confidence            99999999863                                        8999999999999 999999999999999


Q ss_pred             HHHHH--------------------------------HHhc-CCcEEEecCcchH----hHHHHhcC-CCCCCCCChhHH
Q 048308          119 IAKQI--------------------------------LLNS-EGNSLHVGKGDGV----MSYFVGIG-FEPSAAMNPSDF  160 (413)
Q Consensus       119 ~~~~i--------------------------------~ll~-~G~~v~~G~~~~~----~~~f~~~g-~~~p~~~n~ad~  160 (413)
                      +|..|                                ++|+ .|++||+|+..+.    ++||+++| ++||...|||||
T Consensus       965 aA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~ 1044 (1391)
T KOG0065|consen  965 AAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEW 1044 (1391)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHH
Confidence            99766                                4665 6899999997764    56999988 899999999999


Q ss_pred             HHHhhCCccCCCCCcchHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCCC-CCCCCCCCCcCCCHHHHHHHHHHHhhhc-
Q 048308          161 LLDLANGVVSGDPKDDQKALKETLISAYKS-NLSEKLKASFQEVGDHSLI-GPGNKKNSNWSTTWWQQSSELLKRNFRQ-  237 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~-  237 (413)
                      ++|+++.....       ....++.+.|++ ..+++.++++++..+.... ..+.....++..|+|.|++.+++|++.. 
T Consensus      1045 mLevi~~~~~~-------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~sy 1117 (1391)
T KOG0065|consen 1045 MLEVIGAGAEA-------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSY 1117 (1391)
T ss_pred             HHhhccccccc-------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHH
Confidence            99998632111       122356777876 5566677777766554433 2223335568899999999999999987 


Q ss_pred             -c-cchhHhhhhhcc-------------ccChHHHHH-HHhhh---h--------------------c-------ccchH
Q 048308          238 -S-SSFCGSKLLSQL-------------TSHRIHIIN-SHICY---C--------------------F-------NFRLS  271 (413)
Q Consensus       238 -~-~~~~~~~~~~~i-------------~~~~~~~~~-~f~~~---~--------------------f-------~Y~~~  271 (413)
                       | +.+.++|++..+             +++..++|| ++.+|   +                    +       +|++.
T Consensus      1118 WRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~ 1197 (1391)
T KOG0065|consen 1118 WRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWT 1197 (1391)
T ss_pred             hCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHH
Confidence             4 888888887766             456678888 22221   0                    0       89999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 048308          272 SYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITATIVLQY  340 (413)
Q Consensus       272 ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~~~  340 (413)
                      +|.+|++++|+|+.++++++|.+|+|||+|+..++.+           .++..++|+|+.+++||.++|..+++++..++
T Consensus      1198 ~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~ 1277 (1391)
T KOG0065|consen 1198 PFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFW 1277 (1391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998876           34567899999999999999999999988775


Q ss_pred             h--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-c----------------------cCC----C--CCh
Q 048308          341 L--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT-C----------------------YAG----L--SHQ  383 (413)
Q Consensus       341 ~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~-~----------------------~~~----~--~~~  383 (413)
                      .        ...||.||+|+||+||+.|-.++++..++++... |                      .++    +  +..
T Consensus      1278 ~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~ 1357 (1391)
T KOG0065|consen 1278 NLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL 1357 (1391)
T ss_pred             HHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc
Confidence            4        5799999999999999999999999999997532 1                      122    1  111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048308          384 IICVAALAVMLLGSRLAAYDALMGIG  409 (413)
Q Consensus       384 ~~~~~il~~~~~~~~~l~~~~L~~~~  409 (413)
                      -...++..++.+++.+++.++.++.+
T Consensus      1358 a~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1358 ATTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred             ceeEEEEeeeehHHHHHHHHHHHHHH
Confidence            22233455677788888888877643

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=6.5e-66  Score=590.26  Aligned_cols=402  Identities=24%  Similarity=0.359  Sum_probs=321.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +|+|||++++|||+++|+||||||||||||+|+|+.+++ ..+|+|.+||++.....++.++||+|+|.+++.+||+|+|
T Consensus       778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L  857 (1394)
T TIGR00956       778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESL  857 (1394)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHH
Confidence            799999999999999999999999999999999998654 4579999999988666677899999999999999999999


Q ss_pred             HHHHHcCCc----------------------------------------hhHHHHHHHHhhCCC-EEEEeCCCCCCCHHH
Q 048308           81 VFIALFRLP----------------------------------------IKRVSRAQELLINPS-LLFLDEPASGLDSTI  119 (413)
Q Consensus        81 ~f~~~~~~~----------------------------------------~krvsia~~l~~~p~-llllDEPtsgLD~~~  119 (413)
                      .|++.++.|                                        +||++||++|+.+|+ +|+|||||+|||+.+
T Consensus       858 ~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~  937 (1394)
T TIGR00956       858 RFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT  937 (1394)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHH
Confidence            998765431                                        189999999999997 999999999999999


Q ss_pred             HHHH--------------------------------HHhcCC-cEEEecCc----chHhHHHHhcCC-CCCCCCChhHHH
Q 048308          120 AKQI--------------------------------LLNSEG-NSLHVGKG----DGVMSYFVGIGF-EPSAAMNPSDFL  161 (413)
Q Consensus       120 ~~~i--------------------------------~ll~~G-~~v~~G~~----~~~~~~f~~~g~-~~p~~~n~ad~~  161 (413)
                      +.++                                ++|++| +++|+|++    +++.+||+++|+ +||+..|||||+
T Consensus       938 ~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ 1017 (1394)
T TIGR00956       938 AWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWM 1017 (1394)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHH
Confidence            9877                                366776 99999997    578999999995 999999999999


Q ss_pred             HHhhCCccCCCCCcchHHHHHHHHHHHHhh-hHHHHHHHHHhhccCCC---CCCCCCCCCCcCCCHHHHHHHHHHHhhhc
Q 048308          162 LDLANGVVSGDPKDDQKALKETLISAYKSN-LSEKLKASFQEVGDHSL---IGPGNKKNSNWSTTWWQQSSELLKRNFRQ  237 (413)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~  237 (413)
                      +|+.+.....   +    ..+++.+.|++. ..++..++++.......   ........+++.++||+|+++|++|++++
T Consensus      1018 ldvi~~~~~~---~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~ 1090 (1394)
T TIGR00956      1018 LEVIGAAPGA---H----ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQ 1090 (1394)
T ss_pred             HHHhhccccc---c----hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHH
Confidence            9998642211   1    112344555542 22233333322211110   00011122467899999999999999987


Q ss_pred             --c-cchhHhhhhhcc-------------ccChHHHHH----HHhh------------hhc---------------ccch
Q 048308          238 --S-SSFCGSKLLSQL-------------TSHRIHIIN----SHIC------------YCF---------------NFRL  270 (413)
Q Consensus       238 --~-~~~~~~~~~~~i-------------~~~~~~~~~----~f~~------------~~f---------------~Y~~  270 (413)
                        | +.+...|+++.+             +++..++++    +|+.            ..|               +|++
T Consensus      1091 ~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~ 1170 (1394)
T TIGR00956      1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSW 1170 (1394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCH
Confidence              4 667777777666             456677777    1211            001               7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH------------------HHHHHHHHHHHHHhcCCHHHHHHH
Q 048308          271 SSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW------------------LIKPQSIRLAIGAVLMKQKVASTI  332 (413)
Q Consensus       271 ~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~------------------~l~~~~~g~~i~a~~~~~~~A~~i  332 (413)
                      ++|++|++++|+|+.++.+++|++|+|||+||++++..                  .+++.++|+++++++|+..+|+.+
T Consensus      1171 ~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~ 1250 (1394)
T TIGR00956      1171 LAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVL 1250 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence            99999999999999999999999999999999876521                  356789999999999999999999


Q ss_pred             HHHHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc-----------------------------
Q 048308          333 TATIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT-----------------------------  375 (413)
Q Consensus       333 ~~~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~-----------------------------  375 (413)
                      +|+++++++        .++||+||+|++|+||++|++||++.|||.+...                             
T Consensus      1251 ~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~ 1330 (1394)
T TIGR00956      1251 ASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENA 1330 (1394)
T ss_pred             HHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhC
Confidence            999988876        4799999999999999999999999999977431                             


Q ss_pred             ---------------c------------cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048308          376 ---------------C------------YAGLSHQIICVAALAVMLLGSRLAAYDALMGIGRI  411 (413)
Q Consensus       376 ---------------~------------~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~  411 (413)
                                     |            +++.++.|+|+++++++++++ ++++++|++..|.
T Consensus      1331 ~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956      1331 GGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred             CcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence                           1            223456899999999999999 8888999875543

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4e-66  Score=562.52  Aligned_cols=409  Identities=25%  Similarity=0.338  Sum_probs=330.0

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccChh-ccccEEEEecCCccCCCCCHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSRT-VKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~-~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +||+|+||.++|||++.++||+||||||||++++|.++.. ...|+|.+||++.++. .++.++|..|+|.|+|.|||||
T Consensus       129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre  208 (1391)
T KOG0065|consen  129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE  208 (1391)
T ss_pred             eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence            3899999999999999999999999999999999987642 4568999999998763 3577999999999999999999


Q ss_pred             HHHHHHHcCCch----------------------------------------------hHHHHHHHHhhCCCEEEEeCCC
Q 048308           79 TLVFIALFRLPI----------------------------------------------KRVSRAQELLINPSLLFLDEPA  112 (413)
Q Consensus        79 ~l~f~~~~~~~~----------------------------------------------krvsia~~l~~~p~llllDEPt  112 (413)
                      +|.|+++++.+.                                              |||++|++++.+++++++||+|
T Consensus       209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t  288 (1391)
T KOG0065|consen  209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT  288 (1391)
T ss_pred             hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence            999999987751                                              8999999999999999999999


Q ss_pred             CCCCHHHHHHH---------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhH
Q 048308          113 SGLDSTIAKQI---------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSD  159 (413)
Q Consensus       113 sgLD~~~~~~i---------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad  159 (413)
                      +|||+.++.++                                 ++|++|++||+||.+++++||+++||.||++.++||
T Consensus       289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD  368 (1391)
T KOG0065|consen  289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD  368 (1391)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence            99999999887                                 689999999999999999999999999999999999


Q ss_pred             HHHHhhCCccCCC----CCcchH-HHHHHHHHHHHh-hhHHHHHHHHHhhccCCCCCCCCCCCCCcCCCHHHHHHHHHHH
Q 048308          160 FLLDLANGVVSGD----PKDDQK-ALKETLISAYKS-NLSEKLKASFQEVGDHSLIGPGNKKNSNWSTTWWQQSSELLKR  233 (413)
Q Consensus       160 ~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R  233 (413)
                      |+.++++......    .+...+ ...+++.+.|++ +..+++..++..+.+..+........++|..++|.|++.|++|
T Consensus       369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R  448 (1391)
T KOG0065|consen  369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR  448 (1391)
T ss_pred             HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence            9999998432211    111111 123667777776 4455555555544443333333445678999999999999999


Q ss_pred             hhhcc---cchhHhhhhhcc-----------ccC---hHHHHH----HHhh---h----------h------c-------
Q 048308          234 NFRQS---SSFCGSKLLSQL-----------TSH---RIHIIN----SHIC---Y----------C------F-------  266 (413)
Q Consensus       234 ~~~~~---~~~~~~~~~~~i-----------~~~---~~~~~~----~f~~---~----------~------f-------  266 (413)
                      .|+..   ..++..++++.+           +.+   ..+...    .|++   +          .      |       
T Consensus       449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~  528 (1391)
T KOG0065|consen  449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLS  528 (1391)
T ss_pred             HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccc
Confidence            99763   333222222222           111   111111    1111   1          1      1       


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048308          267 NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW-----------LIKPQSIRLAIGAVLMKQKVASTITAT  335 (413)
Q Consensus       267 ~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-----------~l~~~~~g~~i~a~~~~~~~A~~i~~~  335 (413)
                      +|+++||.++.+++++|+.++.+++|.+|+||++||++++++           .+++.+++++++++++++..|+.+|++
T Consensus       529 fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~  608 (1391)
T KOG0065|consen  529 FYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGI  608 (1391)
T ss_pred             ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHH
Confidence            799999999999999999999999999999999999999998           346788999999999999999999998


Q ss_pred             HHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCc------------------c-------------
Q 048308          336 IVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDT------------------C-------------  376 (413)
Q Consensus       336 ~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~------------------~-------------  376 (413)
                      .++...        .++||+||+|++|+||+.||||+|+.|||.+.+.                  |             
T Consensus       609 ~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~  688 (1391)
T KOG0065|consen  609 LLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVS  688 (1391)
T ss_pred             HHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEe
Confidence            876644        5899999999999999999999999999988542                  1             


Q ss_pred             -------c--CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048308          377 -------Y--AGLSHQIICVAALAVMLLGSRLAAYDALMGIG  409 (413)
Q Consensus       377 -------~--~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~  409 (413)
                             .  ....+.|+|++|++|+.++|.++..+++.+++
T Consensus       689 g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~  730 (1391)
T KOG0065|consen  689 GRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK  730 (1391)
T ss_pred             cccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence                   1  12235799999999999999999999998865

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-34  Score=261.92  Aligned_cols=155  Identities=31%  Similarity=0.507  Sum_probs=125.7

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lT   75 (413)
                      ++|+|||+++++||+++|+||||||||||||||+++..  ..+|+|.++|....     ...|+++|+|+|+..+||++|
T Consensus        16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlT   93 (240)
T COG1126          16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLT   93 (240)
T ss_pred             EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecccccccccch
Confidence            47999999999999999999999999999999999987  46799999997552     246788999999999999999


Q ss_pred             HHHHHHHHHH--------------------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           76 VTETLVFIAL--------------------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        76 v~e~l~f~~~--------------------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |.||+..+-.                    .++              .+|||+|||+|+.+|+++++|||||+||++...
T Consensus        94 vleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~  173 (240)
T COG1126          94 VLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG  173 (240)
T ss_pred             HHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHH
Confidence            9999987631                    111              128999999999999999999999999999998


Q ss_pred             HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      +++     +-.+|-+.-.-            .|++.-..+.||.++-+..|..
T Consensus       174 EVL~vm~~LA~eGmTMivV------------THEM~FAr~VadrviFmd~G~i  214 (240)
T COG1126         174 EVLDVMKDLAEEGMTMIIV------------THEMGFAREVADRVIFMDQGKI  214 (240)
T ss_pred             HHHHHHHHHHHcCCeEEEE------------echhHHHHHhhheEEEeeCCEE
Confidence            884     44467665552            2333334566777777766643

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.3e-33  Score=274.57  Aligned_cols=120  Identities=40%  Similarity=0.589  Sum_probs=110.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|||+++++||+++++||||||||||+|+|+|+.++  .+|+|.++|.+..+   ..++.+||++|++.+++.+||+|
T Consensus        20 ~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e   97 (293)
T COG1131          20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE   97 (293)
T ss_pred             EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHH
Confidence            79999999999999999999999999999999999984  78999999987653   56778999999999999999999


Q ss_pred             HHHHHHHcCCc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFRLP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +|.|.+.++.+                                 +||++||++|+.+|+++||||||+|||+.++.++
T Consensus        98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~  175 (293)
T COG1131          98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI  175 (293)
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence            99998776532                                 1799999999999999999999999999999887

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=2.2e-32  Score=252.99  Aligned_cols=160  Identities=34%  Similarity=0.515  Sum_probs=129.6

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h----hccccEEEEecCCccCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R----TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~v~q~~~~~~~   73 (413)
                      +|++|||+.|++||+++||||||||||||||+|.|+++  +.+|+|.++|.++.   +    ..+++.|+++|+-.+|..
T Consensus        22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss   99 (263)
T COG1127          22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS   99 (263)
T ss_pred             EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc
Confidence            37999999999999999999999999999999999998  47799999998763   1    356789999999999999


Q ss_pred             CCHHHHHHHHHHc--CCc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           74 LTVTETLVFIALF--RLP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        74 lTv~e~l~f~~~~--~~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||.||+.|..+-  ++|                                 .||+++|||++.||+++|+||||+|||+.
T Consensus       100 ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI  179 (263)
T COG1127         100 LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI  179 (263)
T ss_pred             cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcc
Confidence            9999999885321  122                                 18999999999999999999999999999


Q ss_pred             HHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          119 IAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       119 ~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      ++..+-     +.+. |-+++.            +.|+.+...+.||++..+.+|.+...++
T Consensus       180 ~a~~~~~LI~~L~~~lg~T~i~------------VTHDl~s~~~i~Drv~~L~~gkv~~~Gt  229 (263)
T COG1127         180 SAGVIDELIRELNDALGLTVIM------------VTHDLDSLLTIADRVAVLADGKVIAEGT  229 (263)
T ss_pred             hHHHHHHHHHHHHHhhCCEEEE------------EECChHHHHhhhceEEEEeCCEEEEeCC
Confidence            997761     1111 555554            4566667777778777777776644333

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.9e-32  Score=267.06  Aligned_cols=137  Identities=31%  Similarity=0.479  Sum_probs=121.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|||+.+  +.+|+|.++|+..++  ..+|.+++|+|+..++|+|||+||
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N   95 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN   95 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence            6899999999999999999999999999999999987  478999999998864  457889999999999999999999


Q ss_pred             HHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308           80 LVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---  123 (413)
Q Consensus        80 l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---  123 (413)
                      +.|..+.+. +                                +|||++||||+.+|++++||||.|+||+..+.++   
T Consensus        96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e  175 (338)
T COG3839          96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE  175 (338)
T ss_pred             hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence            999877642 1                                1899999999999999999999999999998766   


Q ss_pred             -----------------------------HHhcCCcEEEecCcchH
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                                   .+|++|++.-.|++.++
T Consensus       176 i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el  221 (338)
T COG3839         176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL  221 (338)
T ss_pred             HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence                                         36667777777777665

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.8e-32  Score=256.19  Aligned_cols=152  Identities=28%  Similarity=0.420  Sum_probs=130.8

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|.+. ......++||+|++.++|.+||+||+
T Consensus        17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV   93 (248)
T COG1116          17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNV   93 (248)
T ss_pred             EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhh
Confidence            37999999999999999999999999999999999987  4779999999988 44466799999999999999999999


Q ss_pred             HHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH----
Q 048308           81 VFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----  123 (413)
Q Consensus        81 ~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i----  123 (413)
                      .++...+. +                                +|||+|||+|+.+|++|+||||++.||+.|+.++    
T Consensus        94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l  173 (248)
T COG1116          94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL  173 (248)
T ss_pred             eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH
Confidence            98765531 1                                1899999999999999999999999999999888    


Q ss_pred             --HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308          124 --LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG  167 (413)
Q Consensus       124 --~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~  167 (413)
                        +.-..++++-+            +.|+..+..-.+|.++.+.++
T Consensus       174 ~~lw~~~~~Tvll------------VTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         174 LRLWEETRKTVLL------------VTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             HHHHHhhCCEEEE------------EeCCHHHHHhhhCEEEEecCC
Confidence              23346788777            456777777778888887764

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=2.5e-32  Score=269.69  Aligned_cols=153  Identities=31%  Similarity=0.480  Sum_probs=130.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +++|+|+.+++||+++|+||||||||||||+|||..+  +.+|+|.++|+++..  ..+|.+++|+|+-.+||+|||+||
T Consensus        20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~N   97 (352)
T COG3842          20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEEN   97 (352)
T ss_pred             EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHH
Confidence            6899999999999999999999999999999999987  477999999999864  578899999999999999999999


Q ss_pred             HHHHHHcCC--c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308           80 LVFIALFRL--P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--  123 (413)
Q Consensus        80 l~f~~~~~~--~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--  123 (413)
                      +.|..+.+.  +                                .|||++||+|+.+|++|+||||.|+||..-+.++  
T Consensus        98 VafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~  177 (352)
T COG3842          98 VAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK  177 (352)
T ss_pred             hhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHH
Confidence            999877322  1                                1799999999999999999999999999988776  


Q ss_pred             ------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308          124 ------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL  164 (413)
Q Consensus       124 ------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~  164 (413)
                                                    .+|++|++.-.|+++++        |..|...-.|||+=+.
T Consensus       178 Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~  240 (352)
T COG3842         178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFIGES  240 (352)
T ss_pred             HHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence                                          47777887777777665        3345445556665443

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.1e-31  Score=245.87  Aligned_cols=175  Identities=28%  Similarity=0.418  Sum_probs=132.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~   73 (413)
                      ++|+|||+.+++||+++|+||||||||||||+|+|+.+  +.+|+|.+||....       +.+++++|+++|+..+.+.
T Consensus        18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r   95 (258)
T COG3638          18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR   95 (258)
T ss_pred             eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence            37999999999999999999999999999999999876  57799999997653       2457789999999999999


Q ss_pred             CCHHHHHHHHHHcCC-----------------------------------------chhHHHHHHHHhhCCCEEEEeCCC
Q 048308           74 LTVTETLVFIALFRL-----------------------------------------PIKRVSRAQELLINPSLLFLDEPA  112 (413)
Q Consensus        74 lTv~e~l~f~~~~~~-----------------------------------------~~krvsia~~l~~~p~llllDEPt  112 (413)
                      +||.||+.....-+.                                         ..|||+|||+|+.+|++++.|||+
T Consensus        96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv  175 (258)
T COG3638          96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV  175 (258)
T ss_pred             cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence            999999975432111                                         118999999999999999999999


Q ss_pred             CCCCHHHHHHHH------HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHH
Q 048308          113 SGLDSTIAKQIL------LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLIS  186 (413)
Q Consensus       113 sgLD~~~~~~i~------ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (413)
                      ++||+.++.+|+      --.+|.++-.--            |......+.||.++.+.+|++.-+++.. +...+.+.+
T Consensus       176 asLDp~~a~~Vm~~l~~in~~~g~Tvi~nL------------H~vdlA~~Y~~Riigl~~G~ivfDg~~~-el~~~~~~~  242 (258)
T COG3638         176 ASLDPESAKKVMDILKDINQEDGITVIVNL------------HQVDLAKKYADRIIGLKAGRIVFDGPAS-ELTDEALDE  242 (258)
T ss_pred             cccChhhHHHHHHHHHHHHHHcCCEEEEEe------------chHHHHHHHHhhheEecCCcEEEeCChh-hhhHHHHHH
Confidence            999999999995      112566554421            2333345667777777777654333221 123344555


Q ss_pred             HHHh
Q 048308          187 AYKS  190 (413)
Q Consensus       187 ~~~~  190 (413)
                      -|..
T Consensus       243 iYg~  246 (258)
T COG3638         243 IYGN  246 (258)
T ss_pred             Hhcc
Confidence            5554

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.3e-31  Score=241.45  Aligned_cols=159  Identities=28%  Similarity=0.411  Sum_probs=136.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      .++||||+++.||+++|+|||||||||+||+|++++.  +.+|.|.++|.+..+   ..++++|.++.+..++..||++|
T Consensus        17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE   94 (245)
T COG4555          17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE   94 (245)
T ss_pred             hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence            6899999999999999999999999999999999998  477999999987642   56888999998889999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--  123 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--  123 (413)
                      ||.|.+.+. +.                                +|||+|||||++||++++|||||||||..+...+  
T Consensus        95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d  174 (245)
T COG4555          95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD  174 (245)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH
Confidence            999876442 11                                1899999999999999999999999999999887  


Q ss_pred             ---HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          124 ---LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       124 ---~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                         .+-++|+++-+.+            |.+++....||.++.+.+|++.-.++
T Consensus       175 fi~q~k~egr~viFSS------------H~m~EvealCDrvivlh~Gevv~~gs  216 (245)
T COG4555         175 FIKQLKNEGRAVIFSS------------HIMQEVEALCDRVIVLHKGEVVLEGS  216 (245)
T ss_pred             HHHHhhcCCcEEEEec------------ccHHHHHHhhheEEEEecCcEEEcCC
Confidence               2455799887754            67777778899999999998765444

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=6.3e-31  Score=242.45  Aligned_cols=121  Identities=32%  Similarity=0.526  Sum_probs=107.6

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lT   75 (413)
                      ++|+|||+++++||+++|+|+||||||||||+|+|..+  ..+|+|.++|+++..     ..++.++||||....|+.||
T Consensus        17 ~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LT   94 (237)
T COG0410          17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLT   94 (237)
T ss_pred             eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCc
Confidence            47999999999999999999999999999999999987  358999999998752     35667999999999999999


Q ss_pred             HHHHHHHHHHcCC----------------c-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           76 VTETLVFIALFRL----------------P-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        76 v~e~l~f~~~~~~----------------~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      |+|||..++..+-                |                 .|.++|||||+.+|++|+|||||.||-+.-..+
T Consensus        95 VeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~  174 (237)
T COG0410          95 VEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE  174 (237)
T ss_pred             HHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHH
Confidence            9999997654321                1                 168999999999999999999999999999988


Q ss_pred             H
Q 048308          123 I  123 (413)
Q Consensus       123 i  123 (413)
                      |
T Consensus       175 I  175 (237)
T COG0410         175 I  175 (237)
T ss_pred             H
Confidence            8

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8e-31  Score=238.44  Aligned_cols=122  Identities=24%  Similarity=0.384  Sum_probs=107.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccCh------hccccEEEEecCCccC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFY   71 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~   71 (413)
                      ++|+|||+.+++++++|++||||||||||||++.++...   .+.+|+|.++|+.+..      ..|+.+|.|+|.+.-|
T Consensus        21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF  100 (253)
T COG1117          21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF  100 (253)
T ss_pred             hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence            479999999999999999999999999999999887542   2688999999987632      4688999999999999


Q ss_pred             CCCCHHHHHHHHHHcCC-------------------------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           72 LHLTVTETLVFIALFRL-------------------------------------PIKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        72 ~~lTv~e~l~f~~~~~~-------------------------------------~~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      | +|++||+.|..++..                                     ..||+.|||+|+.+|++|+||||||+
T Consensus       101 p-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA  179 (253)
T COG1117         101 P-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA  179 (253)
T ss_pred             C-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc
Confidence            8 999999999755421                                     01899999999999999999999999


Q ss_pred             CCHHHHHHH
Q 048308          115 LDSTIAKQI  123 (413)
Q Consensus       115 LD~~~~~~i  123 (413)
                      ||+.++.+|
T Consensus       180 LDPIsT~kI  188 (253)
T COG1117         180 LDPISTLKI  188 (253)
T ss_pred             cCchhHHHH
Confidence            999999887

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.97  E-value=2.2e-31  Score=252.68  Aligned_cols=175  Identities=28%  Similarity=0.389  Sum_probs=139.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .+|+|+|+++++||+++|+||||||||||||+|+|.+++  .+|+|.++|+++.+    ...+.++||+|.....+.+||
T Consensus        16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV   93 (258)
T COG1120          16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV   93 (258)
T ss_pred             eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence            379999999999999999999999999999999999874  67999999998753    566789999999988899999


Q ss_pred             HHHHHHHHHcCC-------------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           77 TETLVFIALFRL-------------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        77 ~e~l~f~~~~~~-------------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      +|.+.+...-..                                     .+||+.||++|+.+|++|+||||||.||...
T Consensus        94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~  173 (258)
T COG1120          94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH  173 (258)
T ss_pred             eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence            999876421100                                     1289999999999999999999999999999


Q ss_pred             HHHHH-----Hh-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHHH
Q 048308          120 AKQIL-----LN-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYK  189 (413)
Q Consensus       120 ~~~i~-----ll-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (413)
                      +.+++     +. .+|.++-.            .-|+.......||+++.+.+|++...+.+.+..+.+.+.+.|.
T Consensus       174 Q~evl~ll~~l~~~~~~tvv~------------vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg  237 (258)
T COG1120         174 QIEVLELLRDLNREKGLTVVM------------VLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG  237 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEE------------EecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence            99985     22 34775544            2355555567789999999888776666555445555555554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=2.1e-30  Score=241.61  Aligned_cols=152  Identities=36%  Similarity=0.546  Sum_probs=121.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h-----hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R-----TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+|||||||||||++|+|+.++  .+|.|.++|.+..   +     ..++.+|||+|+..++|+
T Consensus        20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            79999999999999999999999999999999999874  7899999997653   1     234579999999999999


Q ss_pred             CCHHHHHHHHHHc-------------------CC--------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           74 LTVTETLVFIALF-------------------RL--------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        74 lTv~e~l~f~~~~-------------------~~--------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      +||+||+.+...+                   ++        |       +|||+|||||+.+|++++.||||.+||+.+
T Consensus        98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t  177 (226)
T COG1136          98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT  177 (226)
T ss_pred             CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence            9999999864321                   11        1       189999999999999999999999999999


Q ss_pred             HHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308          120 AKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV  168 (413)
Q Consensus       120 ~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~  168 (413)
                      +..|+     +.. .|+++-.-+.            +... ...||.++.+.+|.
T Consensus       178 ~~~V~~ll~~~~~~~g~tii~VTH------------d~~l-A~~~dr~i~l~dG~  219 (226)
T COG1136         178 AKEVLELLRELNKERGKTIIMVTH------------DPEL-AKYADRVIELKDGK  219 (226)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcC------------CHHH-HHhCCEEEEEeCCe
Confidence            99995     222 3878777443            3221 23466666666554

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=6.6e-31  Score=244.51  Aligned_cols=121  Identities=32%  Similarity=0.538  Sum_probs=108.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++++|+|+++++||+++++|||||||||+||+|.++.+  +.+|+|.+||++..+    ..|+.+|||-|+-.+||++||
T Consensus        15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv   92 (309)
T COG1125          15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV   92 (309)
T ss_pred             eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence            37899999999999999999999999999999999998  478999999998753    568899999999999999999


Q ss_pred             HHHHHHHHHc-------------------CC---------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           77 TETLVFIALF-------------------RL---------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~---------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      .||+.+.-.+                   ++         |       .|||.+||||+.+|+++++|||+++||+.++.
T Consensus        93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~  172 (309)
T COG1125          93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK  172 (309)
T ss_pred             HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence            9999775332                   11         1       18999999999999999999999999999998


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      ++
T Consensus       173 ~l  174 (309)
T COG1125         173 QL  174 (309)
T ss_pred             HH
Confidence            77

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=248.49  Aligned_cols=120  Identities=36%  Similarity=0.564  Sum_probs=107.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc---ccCh--hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN---PLSR--TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .++|||+.|+.||++|++|||||||||||++|||+..  +..|.|.+||+   +.++  ...|++|||+|+..+|++|||
T Consensus        17 a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtV   94 (345)
T COG1118          17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTV   94 (345)
T ss_pred             ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcccchH
Confidence            5789999999999999999999999999999999987  47799999999   4433  346789999999999999999


Q ss_pred             HHHHHHHHHcCC---c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           77 TETLVFIALFRL---P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        77 ~e~l~f~~~~~~---~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      .||+.|+...+.   +                                +|||++||+|+..|++|+||||+++||..-+.
T Consensus        95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~  174 (345)
T COG1118          95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK  174 (345)
T ss_pred             HhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence            999999875541   1                                18999999999999999999999999999998


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      ++
T Consensus       175 ~l  176 (345)
T COG1118         175 EL  176 (345)
T ss_pred             HH
Confidence            77

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.97  E-value=5.3e-30  Score=252.48  Aligned_cols=120  Identities=29%  Similarity=0.500  Sum_probs=106.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...   ..++.+||++|+..+++.+||+|
T Consensus        22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e   99 (306)
T PRK13537         22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE   99 (306)
T ss_pred             EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHH
Confidence            7899999999999999999999999999999999987  467999999987642   34677999999999999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ++.|.+... .+                                +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l  177 (306)
T PRK13537        100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM  177 (306)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH
Confidence            998754321 11                                1899999999999999999999999999999887

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.6e-30  Score=246.85  Aligned_cols=120  Identities=29%  Similarity=0.405  Sum_probs=107.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|||++|++||+.+|+|.||||||||+|+|+++..  +.+|+|.++|.++.       ...|+++|+++|+..++...
T Consensus        21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr   98 (339)
T COG1135          21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR   98 (339)
T ss_pred             eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence            6899999999999999999999999999999999987  47899999997653       14577899999999999999


Q ss_pred             CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||.||+.|...+. .|                                +|||.|||||+.+|++|++|||||+||+.++.
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~  178 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ  178 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence            9999999876442 11                                28999999999999999999999999999999


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      .|
T Consensus       179 sI  180 (339)
T COG1135         179 SI  180 (339)
T ss_pred             HH
Confidence            88

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.1e-30  Score=255.83  Aligned_cols=120  Identities=29%  Similarity=0.519  Sum_probs=107.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|..+  +.+|+|.++|.+...  ..++.++||+|+..++|++||+||
T Consensus        19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN   96 (356)
T PRK11650         19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN   96 (356)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence            6899999999999999999999999999999999987  478999999987643  345789999999999999999999


Q ss_pred             HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.|....+ .+                                +|||+|||+|+.+|++++|||||+|||+.++.++
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l  173 (356)
T PRK11650         97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM  173 (356)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            99875421 11                                1899999999999999999999999999999877

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=2e-30  Score=240.83  Aligned_cols=173  Identities=25%  Similarity=0.401  Sum_probs=144.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +++|||+++++||+++|+||||||||||+|+|+|.++|  .+|+|.++|+++..     ..+..++--+|...+|++|||
T Consensus        19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTV   96 (250)
T COG0411          19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTV   96 (250)
T ss_pred             EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcH
Confidence            68999999999999999999999999999999999984  77999999998752     235568899999999999999


Q ss_pred             HHHHHHHHHcCC--------c-------------------------------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308           77 TETLVFIALFRL--------P-------------------------------------IKRVSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        77 ~e~l~f~~~~~~--------~-------------------------------------~krvsia~~l~~~p~llllDEP  111 (413)
                      .||+..++..+.        +                                     .||+.||++|+++|++|+||||
T Consensus        97 lENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEP  176 (250)
T COG0411          97 LENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEP  176 (250)
T ss_pred             HHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCc
Confidence            999988754221        0                                     1899999999999999999999


Q ss_pred             CCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHH
Q 048308          112 ASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLI  185 (413)
Q Consensus       112 tsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (413)
                      .+||.+..+.++.     +-+ .|.++..            +.|++...++.||++..+..|++..++++++....+...
T Consensus       177 aAGln~~e~~~l~~~i~~i~~~~g~till------------IEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~Vi  244 (250)
T COG0411         177 AAGLNPEETEELAELIRELRDRGGVTILL------------IEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVI  244 (250)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCcEEEE------------EEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhH
Confidence            9999999999884     223 3466555            568999999999999999999987777665555556666


Q ss_pred             HHH
Q 048308          186 SAY  188 (413)
Q Consensus       186 ~~~  188 (413)
                      ++|
T Consensus       245 eAY  247 (250)
T COG0411         245 EAY  247 (250)
T ss_pred             HHh
Confidence            666

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.3e-29  Score=254.06  Aligned_cols=137  Identities=34%  Similarity=0.508  Sum_probs=118.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+|||||||||||++|+|+.+  +.+|+|.++|++...  ..++.++||+|+..+||++||+||
T Consensus        19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eN   96 (353)
T TIGR03265        19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADN   96 (353)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHH
Confidence            6899999999999999999999999999999999987  477999999987642  346789999999999999999999


Q ss_pred             HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308           80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---  123 (413)
Q Consensus        80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---  123 (413)
                      +.|....+ .+                                +|||+|||+|+.+|++++|||||+|||..++.++   
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~  176 (353)
T TIGR03265        97 IAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE  176 (353)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            99875421 11                                1899999999999999999999999999999877   


Q ss_pred             -----------------------------HHhcCCcEEEecCcchH
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                                   ++|++|+++..|++++.
T Consensus       177 L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~  222 (353)
T TIGR03265       177 IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI  222 (353)
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence                                         46677777777776555

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.96  E-value=1.3e-29  Score=249.29  Aligned_cols=120  Identities=33%  Similarity=0.499  Sum_probs=105.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|+++  +.+|+|.++|.+...   ..++.++|++|++.+++.+||+|
T Consensus         8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   85 (302)
T TIGR01188         8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE   85 (302)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence            7899999999999999999999999999999999987  467999999987632   34567999999999999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ++.+.+..+ .+                                +||++||++|+.+|++++|||||+|||+.++..+
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  163 (302)
T TIGR01188        86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI  163 (302)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            998754321 10                                1899999999999999999999999999999887

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2e-29  Score=252.50  Aligned_cols=120  Identities=27%  Similarity=0.496  Sum_probs=107.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|.+...  ..++.++||+|+..++|++||+||
T Consensus        21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eN   98 (351)
T PRK11432         21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGEN   98 (351)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHH
Confidence            6899999999999999999999999999999999987  467999999987643  345789999999999999999999


Q ss_pred             HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.|....+ .+                                +|||+|||+|+.+|++++|||||+|||+.++.++
T Consensus        99 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l  175 (351)
T PRK11432         99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM  175 (351)
T ss_pred             HHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence            99875421 11                                1899999999999999999999999999999887

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.96  E-value=2.1e-29  Score=238.76  Aligned_cols=155  Identities=32%  Similarity=0.468  Sum_probs=122.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...       ..++.++|++|++.+++.+
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (235)
T cd03261          15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL   92 (235)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence            7899999999999999999999999999999999987  467999999987532       2356799999999999999


Q ss_pred             CHHHHHHHHHHcC--Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           75 TVTETLVFIALFR--LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        75 Tv~e~l~f~~~~~--~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+|++.+.....  .+                                +||++||++|+.+|++++|||||+|||+.++
T Consensus        93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~  172 (235)
T cd03261          93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS  172 (235)
T ss_pred             cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence            9999998753211  00                                1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ..+.     +.. +|.++..-+            |+.....+.+|+++.+.+|...
T Consensus       173 ~~l~~~l~~~~~~~~~tvi~vs------------H~~~~~~~~~d~v~~l~~G~i~  216 (235)
T cd03261         173 GVIDDLIRSLKKELGLTSIMVT------------HDLDTAFAIADRIAVLYDGKIV  216 (235)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEe------------cCHHHHHHhcCEEEEEECCeEE
Confidence            9883     222 366655532            2333333456777777666554

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.96  E-value=8.9e-30  Score=238.25  Aligned_cols=131  Identities=30%  Similarity=0.495  Sum_probs=109.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   95 (216)
T TIGR00960        18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR   95 (216)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence            7899999999999999999999999999999999987  467999999987532       1356799999999999999


Q ss_pred             CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+|++.+.....                   ++              +||++||++|+.+|++++|||||+|||+.++.
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~  175 (216)
T TIGR00960        96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR  175 (216)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence            9999998753211                   10              18999999999999999999999999999998


Q ss_pred             HHH-----HhcCCcEEEe
Q 048308          122 QIL-----LNSEGNSLHV  134 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~  134 (413)
                      .+.     +.++|.++..
T Consensus       176 ~l~~~l~~~~~~~~tii~  193 (216)
T TIGR00960       176 DIMRLFEEFNRRGTTVLV  193 (216)
T ss_pred             HHHHHHHHHHHCCCEEEE
Confidence            883     2234665554

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.96  E-value=3.1e-29  Score=250.18  Aligned_cols=120  Identities=32%  Similarity=0.554  Sum_probs=106.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.+++  .+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e  133 (340)
T PRK13536         56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRE  133 (340)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHH
Confidence            78999999999999999999999999999999999874  67999999987642   34667999999999999999999


Q ss_pred             HHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ++.+....                   +++              +||+.||++|+.+|++++|||||+|||+.++.++
T Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l  211 (340)
T PRK13536        134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI  211 (340)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence            99864322                   111              1899999999999999999999999999999888

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=1.5e-29  Score=234.10  Aligned_cols=121  Identities=32%  Similarity=0.586  Sum_probs=111.1

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++++|+|+.++||||.+++|||||||||.+++|.|.++  +.+|.|.++|.+.+...+.+|||.|++.-+++.+||+|.|
T Consensus        16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql   93 (300)
T COG4152          16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQL   93 (300)
T ss_pred             eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHH
Confidence            36899999999999999999999999999999999998  4789999999999888888999999999999999999999


Q ss_pred             HHHHHcC-Cch--------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIALFR-LPI--------------------------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~~~~-~~~--------------------------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .|.+.++ +|+                                |++.+-.+++++|++++||||+||||+.+++-+
T Consensus        94 ~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elL  169 (300)
T COG4152          94 KYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL  169 (300)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHH
Confidence            9987664 221                                789999999999999999999999999998665

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.4e-29  Score=249.86  Aligned_cols=156  Identities=24%  Similarity=0.331  Sum_probs=124.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.++|.++..       ..++.++|++|+..+++.+
T Consensus        20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~   97 (343)
T TIGR02314        20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR   97 (343)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence            7999999999999999999999999999999999987  467999999987642       1356799999999999999


Q ss_pred             CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+||+.+..... .+                                +||+.|||+|+.+|++|+|||||||||+.++.
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~  177 (343)
T TIGR02314        98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ  177 (343)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence            9999998864321 11                                18999999999999999999999999999999


Q ss_pred             HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .++     +..+ |.++..-            .|+.+.....||+++.+.+|++..
T Consensus       178 ~i~~lL~~l~~~~g~tiili------------TH~~~~v~~~~d~v~vl~~G~iv~  221 (343)
T TIGR02314       178 SILELLKEINRRLGLTILLI------------THEMDVVKRICDCVAVISNGELIE  221 (343)
T ss_pred             HHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEE
Confidence            883     2222 6555442            244444445567777776666543

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.96  E-value=3.5e-29  Score=252.53  Aligned_cols=120  Identities=31%  Similarity=0.487  Sum_probs=106.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+|||||||||||++|+|+.+  +.+|+|.++|.+...  ..++.++||+|+..++|++||+||
T Consensus        29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN  106 (375)
T PRK09452         29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFEN  106 (375)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHH
Confidence            6899999999999999999999999999999999987  467999999997643  346789999999999999999999


Q ss_pred             HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.|....+ .+                                +|||+|||+|+.+|++++|||||+|||..++..+
T Consensus       107 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l  183 (375)
T PRK09452        107 VAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM  183 (375)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence            99865321 11                                1899999999999999999999999999999887

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.96  E-value=2e-29  Score=234.86  Aligned_cols=153  Identities=27%  Similarity=0.470  Sum_probs=121.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+.....++.++|++|+..+++.+||+|++.
T Consensus        15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   92 (210)
T cd03269          15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV   92 (210)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence            6899999999999999999999999999999999987  46899999998765545667999999999999999999998


Q ss_pred             HHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           82 FIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        82 f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +....+ .+                                +||++||++|+.+|++++|||||+|||+.++..+.    
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~  172 (210)
T cd03269          93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR  172 (210)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence            754321 10                                18999999999999999999999999999998883    


Q ss_pred             -HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308          125 -LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV  168 (413)
Q Consensus       125 -ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~  168 (413)
                       +.++|.++..-+            |+.+...+.+|+++.+.+|.
T Consensus       173 ~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~  205 (210)
T cd03269         173 ELARAGKTVILST------------HQMELVEELCDRVLLLNKGR  205 (210)
T ss_pred             HHHHCCCEEEEEC------------CCHHHHHHhhhEEEEEeCCE
Confidence             223566665533            23222234466666665554

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.96  E-value=4e-29  Score=250.58  Aligned_cols=120  Identities=36%  Similarity=0.600  Sum_probs=106.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|++...  ..++.++||+|+..+++++||+||
T Consensus        17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en   94 (353)
T PRK10851         17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN   94 (353)
T ss_pred             EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence            6899999999999999999999999999999999987  467999999987643  335679999999999999999999


Q ss_pred             HHHHHHc-----CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           80 LVFIALF-----RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        80 l~f~~~~-----~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      +.|....     +.+                                +||++|||+|+.+|++++|||||+|||+.++.+
T Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~  174 (353)
T PRK10851         95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE  174 (353)
T ss_pred             HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence            9986432     111                                189999999999999999999999999999987


Q ss_pred             H
Q 048308          123 I  123 (413)
Q Consensus       123 i  123 (413)
                      +
T Consensus       175 l  175 (353)
T PRK10851        175 L  175 (353)
T ss_pred             H
Confidence            7

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.3e-29  Score=237.90  Aligned_cols=152  Identities=28%  Similarity=0.439  Sum_probs=122.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhc-cccEEEEecCCc--cCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV-KRKTGFVAHSNV--FYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e   78 (413)
                      +|+|||+++++||+++|+||||||||||+|+|.|+++  +.+|+|.++|.+..+.. +..+|||||...  .-.-+||+|
T Consensus        19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d   96 (254)
T COG1121          19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD   96 (254)
T ss_pred             eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH
Confidence            7999999999999999999999999999999999987  47899999999876532 457999999542  223479999


Q ss_pred             HHHHHHHcCC-------------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           79 TLVFIALFRL-------------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        79 ~l~f~~~~~~-------------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      .+......+.                                     ..|||-|||||+.+|++|+|||||+|+|+.++.
T Consensus        97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~  176 (254)
T COG1121          97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK  176 (254)
T ss_pred             HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence            9876532211                                     018999999999999999999999999999999


Q ss_pred             HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308          122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG  167 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~  167 (413)
                      .++     +-.+|++|..            +.|+.......+|.++-+...
T Consensus       177 ~i~~lL~~l~~eg~tIl~------------vtHDL~~v~~~~D~vi~Ln~~  215 (254)
T COG1121         177 EIYDLLKELRQEGKTVLM------------VTHDLGLVMAYFDRVICLNRH  215 (254)
T ss_pred             HHHHHHHHHHHCCCEEEE------------EeCCcHHhHhhCCEEEEEcCe
Confidence            985     3446998877            345665666667777766543

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=5.8e-29  Score=230.92  Aligned_cols=123  Identities=37%  Similarity=0.511  Sum_probs=108.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++. +.+|+|.++|.+...   ..++.++|++|++.+++.+||+
T Consensus        22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  101 (202)
T cd03233          22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVR  101 (202)
T ss_pred             eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHH
Confidence            789999999999999999999999999999999998732 578999999987642   3456799999999999999999


Q ss_pred             HHHHHHHHcCC----------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           78 ETLVFIALFRL----------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        78 e~l~f~~~~~~----------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      |++.+....+.          .+||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus       102 ~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~  158 (202)
T cd03233         102 ETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL  158 (202)
T ss_pred             HHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence            99998764321          128999999999999999999999999999999883

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.96  E-value=4.3e-29  Score=234.13  Aligned_cols=155  Identities=28%  Similarity=0.412  Sum_probs=121.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   94 (220)
T cd03263          17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE   94 (220)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence            7899999999999999999999999999999999987  468999999987642   34567999999999999999999


Q ss_pred             HHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           79 TLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        79 ~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      |+.+....                   +++              +||++||++|+.+|++++|||||+|||+.++..+. 
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~  174 (220)
T cd03263          95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD  174 (220)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH
Confidence            99875321                   111              18999999999999999999999999999998883 


Q ss_pred             ---HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          125 ---LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       125 ---ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                         -+.++.++..-+            |+.+.....+|+++.+.+|...
T Consensus       175 ~l~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~i~  211 (220)
T cd03263         175 LILEVRKGRSIILTT------------HSMDEAEALCDRIAIMSDGKLR  211 (220)
T ss_pred             HHHHHhcCCEEEEEc------------CCHHHHHHhcCEEEEEECCEEE
Confidence               122445544422            3333333446666666666554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.6e-29  Score=251.33  Aligned_cols=120  Identities=33%  Similarity=0.480  Sum_probs=106.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|.+...  ..++.++||+|+..+||++||+||
T Consensus        34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN  111 (377)
T PRK11607         34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN  111 (377)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence            6899999999999999999999999999999999987  467999999987643  356789999999999999999999


Q ss_pred             HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.|....+ .+                                +||++|||+|+.+|++|+|||||+|||..++.++
T Consensus       112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l  188 (377)
T PRK11607        112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM  188 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            99875421 11                                1899999999999999999999999999999776

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.96  E-value=3e-29  Score=234.20  Aligned_cols=131  Identities=33%  Similarity=0.496  Sum_probs=110.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   94 (214)
T TIGR02673        17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR   94 (214)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence            7899999999999999999999999999999999987  467999999987642       2346799999999999999


Q ss_pred             CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+|++.+....                   +++              +||++||++|+.+|++++|||||+|||+.++.
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~  174 (214)
T TIGR02673        95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE  174 (214)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence            999999875321                   110              18999999999999999999999999999999


Q ss_pred             HHH-----HhcCCcEEEe
Q 048308          122 QIL-----LNSEGNSLHV  134 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~  134 (413)
                      .+.     +.++|+++..
T Consensus       175 ~l~~~l~~~~~~~~tii~  192 (214)
T TIGR02673       175 RILDLLKRLNKRGTTVIV  192 (214)
T ss_pred             HHHHHHHHHHHcCCEEEE
Confidence            883     2235766555

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.96  E-value=7.6e-29  Score=232.69  Aligned_cols=155  Identities=29%  Similarity=0.407  Sum_probs=123.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   92 (220)
T cd03265          15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWE   92 (220)
T ss_pred             eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHH
Confidence            7899999999999999999999999999999999987  467999999976532   33557999999999999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      ++.+....+ .+                                +||++||++|+.+|++++|||||+|||+.++..+. 
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~  172 (220)
T cd03265          93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE  172 (220)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence            998753221 10                                18999999999999999999999999999998883 


Q ss_pred             ----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          125 ----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       125 ----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                          +.++ |.++..-+            |+.+...+.+|+++.+.+|.+.
T Consensus       173 ~l~~~~~~~~~tvi~~t------------H~~~~~~~~~d~i~~l~~G~i~  211 (220)
T cd03265         173 YIEKLKEEFGMTILLTT------------HYMEEAEQLCDRVAIIDHGRII  211 (220)
T ss_pred             HHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEeCCEEE
Confidence                2233 66555532            3333334556777777777654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.96  E-value=8.1e-29  Score=248.61  Aligned_cols=120  Identities=26%  Similarity=0.397  Sum_probs=106.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hc----cccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TV----KRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~----~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.++..    ..    ++.++||+|+..++++
T Consensus         8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            6899999999999999999999999999999999987  478999999987642    12    5689999999999999


Q ss_pred             CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+||+.|.....                   ++              +||+.|||+|+.+|++++|||||+|||+.++
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r  165 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR  165 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            99999998864321                   10              1899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      ..+
T Consensus       166 ~~l  168 (363)
T TIGR01186       166 DSM  168 (363)
T ss_pred             HHH
Confidence            887

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.96  E-value=4.3e-29  Score=233.84  Aligned_cols=131  Identities=36%  Similarity=0.552  Sum_probs=110.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...        ..++.++|++|++.+++.
T Consensus        19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (218)
T cd03255          19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD   96 (218)
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence            7899999999999999999999999999999999987  467999999987532        124579999999999999


Q ss_pred             CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+|++.+....+                   +.              +||++||++|+.+|++++|||||+|||+.++
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (218)
T cd03255          97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG  176 (218)
T ss_pred             CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence            99999998754321                   10              1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEe
Q 048308          121 KQIL-----LNS-EGNSLHV  134 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~  134 (413)
                      ..+.     +.. +|.++..
T Consensus       177 ~~l~~~l~~~~~~~~~tii~  196 (218)
T cd03255         177 KEVMELLRELNKEAGTTIVV  196 (218)
T ss_pred             HHHHHHHHHHHHhcCCeEEE
Confidence            8883     223 3766655

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.96  E-value=4.5e-29  Score=223.27  Aligned_cols=136  Identities=29%  Similarity=0.418  Sum_probs=118.4

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~   73 (413)
                      ++|+|||+.+++||++-|.||||||||||+|.|.+..+  +..|+|.+||+++.       +..+|++|.|+||..++++
T Consensus        16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~   93 (223)
T COG2884          16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD   93 (223)
T ss_pred             hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeecccccc
Confidence            37999999999999999999999999999999999887  47899999999864       2467899999999999999


Q ss_pred             CCHHHHHHHHHHcCC--------------------------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFRL--------------------------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~~--------------------------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      .||.||+.|+.....                          |       +||++||||++.+|++|+.||||-+||+.++
T Consensus        94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s  173 (223)
T COG2884          94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS  173 (223)
T ss_pred             chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence            999999999764321                          1       2899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecCcc
Q 048308          121 KQIL-----LNSEGNSLHVGKGD  138 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~~~  138 (413)
                      .+|+     +...|.+|-.-+.+
T Consensus       174 ~~im~lfeeinr~GtTVl~ATHd  196 (223)
T COG2884         174 WEIMRLFEEINRLGTTVLMATHD  196 (223)
T ss_pred             HHHHHHHHHHhhcCcEEEEEecc
Confidence            9995     33468887775543

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.96  E-value=2.9e-29  Score=234.33  Aligned_cols=153  Identities=32%  Similarity=0.460  Sum_probs=120.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...  ..++.++|++|+..+++.+|++|+
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~   92 (213)
T cd03259          15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAEN   92 (213)
T ss_pred             eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHH
Confidence            7899999999999999999999999999999999987  467999999987642  234579999999989999999999


Q ss_pred             HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308           80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--  124 (413)
Q Consensus        80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--  124 (413)
                      +.+.....                   ++              +||+.||++|+.+|++++|||||+|||+.++..+.  
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~  172 (213)
T cd03259          93 IAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE  172 (213)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            98753211                   10              18999999999999999999999999999998883  


Q ss_pred             ---Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308          125 ---LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV  168 (413)
Q Consensus       125 ---ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~  168 (413)
                         +.+ +|+++..-+            |+.....+.+|+++.+.+|.
T Consensus       173 l~~~~~~~~~tii~~s------------H~~~~~~~~~d~v~~l~~G~  208 (213)
T cd03259         173 LKELQRELGITTIYVT------------HDQEEALALADRIAVMNEGR  208 (213)
T ss_pred             HHHHHHHcCCEEEEEe------------cCHHHHHHhcCEEEEEECCE
Confidence               222 377665533            23222234456666655553

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.96  E-value=3.4e-29  Score=232.99  Aligned_cols=153  Identities=30%  Similarity=0.445  Sum_probs=121.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...  ..++.++|++|++.+++.+||+|+
T Consensus        15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   92 (208)
T cd03268          15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN   92 (208)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence            7899999999999999999999999999999999987  468999999987642  335579999999999999999999


Q ss_pred             HHHHHHcC---------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308           80 LVFIALFR---------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L  125 (413)
Q Consensus        80 l~f~~~~~---------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l  125 (413)
                      +.+.....               +.              +||++||++|+.+|++++|||||+|||+.++..+.     +
T Consensus        93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  172 (208)
T cd03268          93 LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL  172 (208)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence            97754211               10              18999999999999999999999999999998883     2


Q ss_pred             hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308          126 NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV  168 (413)
Q Consensus       126 l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~  168 (413)
                      .++|.++..-+            |+.+...+.+|+++.+.+|+
T Consensus       173 ~~~~~tii~~t------------H~~~~~~~~~d~v~~l~~g~  203 (208)
T cd03268         173 RDQGITVLISS------------HLLSEIQKVADRIGIINKGK  203 (208)
T ss_pred             HHCCCEEEEEc------------CCHHHHHHhcCEEEEEECCE
Confidence            23576655532            33333334566666665554

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.96  E-value=8.5e-29  Score=248.78  Aligned_cols=120  Identities=32%  Similarity=0.534  Sum_probs=106.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCee--EEEEECCcccCh--hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR--GNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~--G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+|||||||||||++|+|+.++  .+  |+|.++|.+...  ..++.++||+|+..++|++||+
T Consensus        20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~   97 (362)
T TIGR03258        20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE   97 (362)
T ss_pred             EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHH
Confidence            68999999999999999999999999999999999874  56  999999987643  3457899999999999999999


Q ss_pred             HHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           78 ETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        78 e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ||+.|....+ .+                                +|||+|||+|+.+|++++|||||+|||+.++.++
T Consensus        98 enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l  176 (362)
T TIGR03258        98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM  176 (362)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence            9999875421 11                                1899999999999999999999999999999887

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.96  E-value=4.2e-29  Score=236.08  Aligned_cols=155  Identities=26%  Similarity=0.449  Sum_probs=123.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...    . .++.++|++|+..+++.+||
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (232)
T cd03218          15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV   92 (232)
T ss_pred             eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence            7899999999999999999999999999999999987  467999999987532    1 23469999999999999999


Q ss_pred             HHHHHHHHHcC-C------------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALFR-L------------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~~-~------------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +|++.+....+ .                  .              +||++||++|+.+|++++|||||+|||..++..+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~  172 (232)
T cd03218          93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI  172 (232)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence            99998753211 0                  0              1899999999999999999999999999999887


Q ss_pred             H-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          124 L-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       124 ~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .     +.++|.++..-+            |+.......+|+++.+.+|+..
T Consensus       173 ~~~l~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~G~i~  212 (232)
T cd03218         173 QKIIKILKDRGIGVLITD------------HNVRETLSITDRAYIIYEGKVL  212 (232)
T ss_pred             HHHHHHHHHCCCEEEEEe------------CCHHHHHHhCCEEEEEECCeEE
Confidence            3     223576665532            3333334567777777777654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.96  E-value=1.2e-28  Score=242.54  Aligned_cols=120  Identities=31%  Similarity=0.525  Sum_probs=104.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   96 (303)
T TIGR01288        19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE   96 (303)
T ss_pred             EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH
Confidence            7899999999999999999999999999999999987  467999999987532   34567999999999999999999


Q ss_pred             HHHHHHHc-C------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALF-R------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~-~------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ++.+.... +                  ++              +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  174 (303)
T TIGR01288        97 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI  174 (303)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            99754321 1                  10              1899999999999999999999999999999887

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.96  E-value=1.1e-28  Score=231.65  Aligned_cols=156  Identities=32%  Similarity=0.483  Sum_probs=122.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|+++  +.+|+|.++|.+...     ..++.++|++|+..+++.+|+
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (222)
T cd03224          15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV   92 (222)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence            6899999999999999999999999999999999987  467999999987532     124569999999999999999


Q ss_pred             HHHHHHHHHcC------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           77 TETLVFIALFR------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        77 ~e~l~f~~~~~------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +||+.+.....                  ++              +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  172 (222)
T cd03224          93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF  172 (222)
T ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence            99998753211                  00              18999999999999999999999999999998883


Q ss_pred             -----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          125 -----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       125 -----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                           +..+|.++..-+            |+.....+.+|+++.+.+|+...
T Consensus       173 ~~l~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~  212 (222)
T cd03224         173 EAIRELRDEGVTILLVE------------QNARFALEIADRAYVLERGRVVL  212 (222)
T ss_pred             HHHHHHHHCCCEEEEEe------------CCHHHHHHhccEEEEeeCCeEEE
Confidence                 223566665533            23223345567777777766543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=3.6e-29  Score=228.48  Aligned_cols=131  Identities=26%  Similarity=0.449  Sum_probs=110.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~   73 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...     ..++.++|++|+.   .+++.
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   92 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD   92 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence            5899999999999999999999999999999999987  467999999987642     2356799999984   57889


Q ss_pred             CCHHHHHHHHHHcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           74 LTVTETLVFIALFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        74 lTv~e~l~f~~~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      +|++||+.+...+. ..+||++||++|+.+|++++|||||+|||+.++..+.     +..+|.++..
T Consensus        93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii  159 (182)
T cd03215          93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL  159 (182)
T ss_pred             CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            99999998765322 2349999999999999999999999999999999883     2234666555

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=6.5e-30  Score=230.28  Aligned_cols=138  Identities=25%  Similarity=0.468  Sum_probs=118.1

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lT   75 (413)
                      ++++|||+.+++||+++++|||||||||.+.++.|+.+  +.+|.|.++|.+++.     ..+..+||.+|+...|..||
T Consensus        18 ~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~Lt   95 (243)
T COG1137          18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLT   95 (243)
T ss_pred             eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhhcCc
Confidence            37899999999999999999999999999999999987  467999999998753     23346999999999999999


Q ss_pred             HHHHHHHHHHcCC-----------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           76 VTETLVFIALFRL-----------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        76 v~e~l~f~~~~~~-----------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |+||+......+-                                   .+||+.|||+|+.+|+.++||||++|.|+.+.
T Consensus        96 V~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV  175 (243)
T COG1137          96 VEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV  175 (243)
T ss_pred             HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhH
Confidence            9999976543321                                   12899999999999999999999999999998


Q ss_pred             HHH-------------------------------HHhcCCcEEEecCcchH
Q 048308          121 KQI-------------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       121 ~~i-------------------------------~ll~~G~~v~~G~~~~~  140 (413)
                      .+|                               .++++|+++..|+++++
T Consensus       176 ~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei  226 (243)
T COG1137         176 IDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI  226 (243)
T ss_pred             HHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence            777                               36677777777777655

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.96  E-value=1.3e-28  Score=242.13  Aligned_cols=120  Identities=33%  Similarity=0.545  Sum_probs=106.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e   94 (301)
T TIGR03522        17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE   94 (301)
T ss_pred             EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence            7899999999999999999999999999999999987  467999999987642   34567999999999999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ++.+.+.+. .+                                +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l  172 (301)
T TIGR03522        95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI  172 (301)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            998755331 11                                1899999999999999999999999999999887

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=1.6e-28  Score=226.09  Aligned_cols=134  Identities=43%  Similarity=0.656  Sum_probs=113.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.....+.+|+|.++|++.....++.++|++|++.+++.+|++|++.
T Consensus        22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (192)
T cd03232          22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR  101 (192)
T ss_pred             eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence            78999999999999999999999999999999998642357899999998765445567999999998999999999999


Q ss_pred             HHHHc-CCc---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEec
Q 048308           82 FIALF-RLP---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVG  135 (413)
Q Consensus        82 f~~~~-~~~---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G  135 (413)
                      +.... .++   +||+.||++|+.+|++++|||||+|||..++..+.     +-.+|.++..-
T Consensus       102 ~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiiv  164 (192)
T cd03232         102 FSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT  164 (192)
T ss_pred             HHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            86543 232   49999999999999999999999999999999883     22346665553

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=248.30  Aligned_cols=120  Identities=33%  Similarity=0.508  Sum_probs=105.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|.++  +.+|+|.++|++...  ..++.++||+|+..+++++||+||
T Consensus        18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en   95 (369)
T PRK11000         18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN   95 (369)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence            6899999999999999999999999999999999987  467999999987643  235679999999999999999999


Q ss_pred             HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.|....+                   +.              +||++||++|+.+|++++|||||+|||..++..+
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l  172 (369)
T PRK11000         96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM  172 (369)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            98864321                   10              1899999999999999999999999999998776

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.96  E-value=6.6e-29  Score=231.82  Aligned_cols=131  Identities=31%  Similarity=0.457  Sum_probs=110.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (214)
T cd03292          16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR   93 (214)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence            7899999999999999999999999999999999987  467999999986532       2356799999999999999


Q ss_pred             CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |++||+.+....+                   ++              +||++||++|+.+|++++|||||+|||+.++.
T Consensus        94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  173 (214)
T cd03292          94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW  173 (214)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence            9999998753211                   10              18999999999999999999999999999999


Q ss_pred             HHH-----HhcCCcEEEe
Q 048308          122 QIL-----LNSEGNSLHV  134 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~  134 (413)
                      .+.     +.++|.++..
T Consensus       174 ~~~~~l~~~~~~~~tiii  191 (214)
T cd03292         174 EIMNLLKKINKAGTTVVV  191 (214)
T ss_pred             HHHHHHHHHHHcCCEEEE
Confidence            883     2235666554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=1e-28  Score=229.32  Aligned_cols=157  Identities=31%  Similarity=0.388  Sum_probs=122.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC--ccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN--VFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~--~~~~~l   74 (413)
                      +|+|||+++.+||.++|+|+||||||||.++|+|..+  +.+|+|.++|.+..+     .+.+.+.+|+||+  .+.|..
T Consensus        22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~   99 (252)
T COG1124          22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR   99 (252)
T ss_pred             hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence            7999999999999999999999999999999999987  478999999987654     3577899999997  577999


Q ss_pred             CHHHHHHHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           75 TVTETLVFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        75 Tv~e~l~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      ||++.|.=+..                 .++|               .||++|||||+.+|++|++|||||+||+..+.+
T Consensus       100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~  179 (252)
T COG1124         100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ  179 (252)
T ss_pred             hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHH
Confidence            99988754332                 1222               289999999999999999999999999999999


Q ss_pred             HH--Hh--c-C-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          123 IL--LN--S-E-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       123 i~--ll--~-~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      |+  +.  . + |-+.-+            +.|+.......||.++.+.+|...+.
T Consensus       180 IlnlL~~l~~~~~lt~l~------------IsHdl~~v~~~cdRi~Vm~~G~ivE~  223 (252)
T COG1124         180 ILNLLLELKKERGLTYLF------------ISHDLALVEHMCDRIAVMDNGQIVEI  223 (252)
T ss_pred             HHHHHHHHHHhcCceEEE------------EeCcHHHHHHHhhheeeeeCCeEEEe
Confidence            84  11  1 2 222222            23344344455777777777765543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.96  E-value=1.5e-28  Score=233.65  Aligned_cols=155  Identities=28%  Similarity=0.448  Sum_probs=121.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...  ..++.++|++|++.+++.+||+|+
T Consensus        17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   94 (239)
T cd03296          17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDN   94 (239)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHH
Confidence            7899999999999999999999999999999999987  467999999987642  234579999999999999999999


Q ss_pred             HHHHHHcC-----------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           80 LVFIALFR-----------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        80 l~f~~~~~-----------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      +.+.....                       +.              +||+.||++|+.+|++++|||||+|||+.++..
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~  174 (239)
T cd03296          95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE  174 (239)
T ss_pred             HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            98753211                       00              189999999999999999999999999999988


Q ss_pred             HH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          123 IL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       123 i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +.     +.. +|.++..-+            |+.....+.+|+++.+.+|...
T Consensus       175 l~~~l~~~~~~~~~tvii~s------------H~~~~~~~~~d~i~~l~~G~i~  216 (239)
T cd03296         175 LRRWLRRLHDELHVTTVFVT------------HDQEEALEVADRVVVMNKGRIE  216 (239)
T ss_pred             HHHHHHHHHHHcCCEEEEEe------------CCHHHHHHhCCEEEEEECCeEE
Confidence            83     222 366655432            2222223456777767666553

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.96  E-value=5.5e-29  Score=233.13  Aligned_cols=131  Identities=31%  Similarity=0.508  Sum_probs=110.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +++|+|+++++||+++|+|+||||||||+++|+|.++  +.+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   97 (218)
T cd03266          20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE   97 (218)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence            7999999999999999999999999999999999987  467999999987642   34567999999999999999999


Q ss_pred             HHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           79 TLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        79 ~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      ++.+....+                   ++              +||++||++|+.+|++++|||||+|||+.++..+. 
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  177 (218)
T cd03266          98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE  177 (218)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence            997653211                   10              18999999999999999999999999999998883 


Q ss_pred             ----HhcCCcEEEe
Q 048308          125 ----LNSEGNSLHV  134 (413)
Q Consensus       125 ----ll~~G~~v~~  134 (413)
                          +.++|.++..
T Consensus       178 ~l~~~~~~~~tii~  191 (218)
T cd03266         178 FIRQLRALGKCILF  191 (218)
T ss_pred             HHHHHHHCCCEEEE
Confidence                2235766655

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.96  E-value=1.4e-28  Score=232.80  Aligned_cols=156  Identities=28%  Similarity=0.363  Sum_probs=123.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.++|.+...       ..++.++|++|++.+++.+
T Consensus        20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (233)
T cd03258          20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR   97 (233)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence            78999999999999999999999999999999999874  67999999987642       1246799999999999999


Q ss_pred             CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |++||+.+....+                   ++              +||++||++|+.+|++++|||||+|||+.++.
T Consensus        98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (233)
T cd03258          98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ  177 (233)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence            9999998753211                   10              18999999999999999999999999999999


Q ss_pred             HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .+.     +.++ |.++..-+            |+.......+|+++.+.+|....
T Consensus       178 ~l~~~l~~~~~~~~~tvii~s------------H~~~~~~~~~d~i~~l~~G~i~~  221 (233)
T cd03258         178 SILALLRDINRELGLTIVLIT------------HEMEVVKRICDRVAVMEKGEVVE  221 (233)
T ss_pred             HHHHHHHHHHHHcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence            883     2233 77665533            23222334567777777776543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=5.1e-29  Score=225.67  Aligned_cols=128  Identities=36%  Similarity=0.562  Sum_probs=109.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...   ..++.++|++|+..+++.+|++|
T Consensus        15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   92 (173)
T cd03230          15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE   92 (173)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHH
Confidence            6899999999999999999999999999999999987  467999999987642   34567999999999999999999


Q ss_pred             HHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           79 TLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        79 ~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ++.++   ...+||++||++|+.+|++++|||||+|||+.++..+.     +.++|.++..
T Consensus        93 ~~~LS---~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii  150 (173)
T cd03230          93 NLKLS---GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL  150 (173)
T ss_pred             HhhcC---HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            98621   12349999999999999999999999999999999883     3345665544

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.96  E-value=5.1e-29  Score=231.42  Aligned_cols=131  Identities=31%  Similarity=0.447  Sum_probs=108.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCc-cCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNV-FYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~-~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+... ..++.++|++|+.. .+..+||+||
T Consensus        15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~   92 (205)
T cd03226          15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE   92 (205)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence            7899999999999999999999999999999999987  468999999987643 34567999999964 3456799999


Q ss_pred             HHHHHHc---------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308           80 LVFIALF---------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L  125 (413)
Q Consensus        80 l~f~~~~---------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l  125 (413)
                      +.+....               ++.              +||++||++|+.+|++++|||||+|||+.++..+.     +
T Consensus        93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  172 (205)
T cd03226          93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL  172 (205)
T ss_pred             HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9874321               110              18999999999999999999999999999998883     2


Q ss_pred             hcCCcEEEe
Q 048308          126 NSEGNSLHV  134 (413)
Q Consensus       126 l~~G~~v~~  134 (413)
                      .++|.++..
T Consensus       173 ~~~~~tii~  181 (205)
T cd03226         173 AAQGKAVIV  181 (205)
T ss_pred             HHCCCEEEE
Confidence            245765555

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2e-28  Score=239.37  Aligned_cols=157  Identities=28%  Similarity=0.409  Sum_probs=123.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------hhccccEEEEecCC--ccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------RTVKRKTGFVAHSN--VFY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~--~~~   71 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..        ...++.++||+|++  .++
T Consensus        21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   98 (288)
T PRK13643         21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF   98 (288)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence            7999999999999999999999999999999999987  46799999998753        12456799999985  445


Q ss_pred             CCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           72 LHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        72 ~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      + .||.|++.|....                   ++.               +||++||++|+.+|++++|||||+|||+
T Consensus        99 ~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~  177 (288)
T PRK13643         99 E-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP  177 (288)
T ss_pred             c-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCH
Confidence            4 6999999885421                   111               1899999999999999999999999999


Q ss_pred             HHHHHH-------------------------------HHhcCCcEEEecCcchHh---HHHHhcCCCCCCCCChhHHH
Q 048308          118 TIAKQI-------------------------------LLNSEGNSLHVGKGDGVM---SYFVGIGFEPSAAMNPSDFL  161 (413)
Q Consensus       118 ~~~~~i-------------------------------~ll~~G~~v~~G~~~~~~---~~f~~~g~~~p~~~n~ad~~  161 (413)
                      .++..+                               ++|++|++++.|++++..   ..++..|+.+|.....++.+
T Consensus       178 ~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  255 (288)
T PRK13643        178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL  255 (288)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence            999776                               356777777777766652   23445566666554444444

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-28  Score=245.44  Aligned_cols=155  Identities=25%  Similarity=0.340  Sum_probs=122.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~   97 (343)
T PRK11153         20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR   97 (343)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence            7899999999999999999999999999999999987  467999999987642       1356799999999999999


Q ss_pred             CHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+||+.+.....                   ++              +||+.||++|+.+|++++|||||+|||+.++.
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~  177 (343)
T PRK11153         98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR  177 (343)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            9999998764211                   10              18999999999999999999999999999998


Q ss_pred             HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .+.     +..+ |.++..-+            |+.....+.||+++.+.+|...
T Consensus       178 ~l~~~L~~l~~~~g~tiilvt------------H~~~~i~~~~d~v~~l~~G~i~  220 (343)
T PRK11153        178 SILELLKDINRELGLTIVLIT------------HEMDVVKRICDRVAVIDAGRLV  220 (343)
T ss_pred             HHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence            883     2222 66555422            3333333456666666666543

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.96  E-value=2e-28  Score=232.09  Aligned_cols=155  Identities=28%  Similarity=0.428  Sum_probs=122.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|+++  +.+|+|.++|.+...    . .++.++|++|+..+++.+||
T Consensus        15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   92 (236)
T cd03219          15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV   92 (236)
T ss_pred             EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence            6899999999999999999999999999999999987  467999999987642    1 23569999999999999999


Q ss_pred             HHHHHHHHHcC-----------------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           77 TETLVFIALFR-----------------------------LP--------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        77 ~e~l~f~~~~~-----------------------------~~--------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      +|++.+.....                             ++              +||++||++|+.+|++++|||||+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~  172 (236)
T cd03219          93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA  172 (236)
T ss_pred             HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            99998754211                             00              189999999999999999999999


Q ss_pred             CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      |||..++..+.     +..+|+++..-+            |+.....+.+|+++.+.+|...
T Consensus       173 ~LD~~~~~~l~~~l~~~~~~~~tii~vs------------H~~~~~~~~~d~i~~l~~G~i~  222 (236)
T cd03219         173 GLNPEETEELAELIRELRERGITVLLVE------------HDMDVVMSLADRVTVLDQGRVI  222 (236)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEe------------cCHHHHHHhCCEEEEEeCCEEE
Confidence            99999998883     223576655522            3333334556777777776654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.96  E-value=2.6e-28  Score=229.05  Aligned_cols=153  Identities=27%  Similarity=0.427  Sum_probs=120.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+... .++.++|++|+..+++.+|++|++.
T Consensus        19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~   95 (220)
T cd03293          19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNVA   95 (220)
T ss_pred             EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc-ccCcEEEEecccccccCCCHHHHHH
Confidence            7899999999999999999999999999999999987  467999999987653 3567999999999999999999998


Q ss_pred             HHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           82 FIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        82 f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +....+                   +.              +||++||++|+.+|++++|||||+|||+.++..+.    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~  175 (220)
T cd03293          96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL  175 (220)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence            753211                   10              18999999999999999999999999999999883    


Q ss_pred             -Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh--CCcc
Q 048308          125 -LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA--NGVV  169 (413)
Q Consensus       125 -ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~--~~~~  169 (413)
                       +.. +|.++..-+            |+.....+.+|+++.+.  +|++
T Consensus       176 ~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~~~G~i  212 (220)
T cd03293         176 DIWRETGKTVLLVT------------HDIDEAVFLADRVVVLSARPGRI  212 (220)
T ss_pred             HHHHHcCCEEEEEe------------cCHHHHHHhCCEEEEEECCCCEE
Confidence             222 366665532            23222234466666665  4544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.95  E-value=2.7e-28  Score=227.63  Aligned_cols=154  Identities=26%  Similarity=0.409  Sum_probs=120.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...  ..++.++|++|+..+++.+|++||
T Consensus        15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   92 (213)
T cd03301          15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDN   92 (213)
T ss_pred             eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHH
Confidence            7899999999999999999999999999999999987  467999999987643  234569999999988999999999


Q ss_pred             HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308           80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--  124 (413)
Q Consensus        80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--  124 (413)
                      +.+.....                   +.              +||++||++|+.+|++++|||||+|||+.++..+.  
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~  172 (213)
T cd03301          93 IAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE  172 (213)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            98753211                   10              18999999999999999999999999999999884  


Q ss_pred             ---Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          125 ---LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       125 ---ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                         +.. +|.++..-+            |+.+...+.+|+++.+.+|+.
T Consensus       173 l~~~~~~~~~tvi~~s------------H~~~~~~~~~d~i~~l~~g~~  209 (213)
T cd03301         173 LKRLQQRLGTTTIYVT------------HDQVEAMTMADRIAVMNDGQI  209 (213)
T ss_pred             HHHHHHHcCCEEEEEe------------CCHHHHHHhcCeEEEEECCEE
Confidence               122 366655532            233233344566655555543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=3.4e-28  Score=230.37  Aligned_cols=131  Identities=34%  Similarity=0.556  Sum_probs=109.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh-------c-cccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-------V-KRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~-~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+....       . ++.++|++|+..+++.
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~  101 (233)
T PRK11629         24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD  101 (233)
T ss_pred             eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence            7999999999999999999999999999999999987  4689999999876421       1 2569999999989999


Q ss_pred             CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +|++||+.+....                   +++              +||++||++|+.+|++++|||||+|||+.++
T Consensus       102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  181 (233)
T PRK11629        102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA  181 (233)
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            9999999874321                   110              1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEe
Q 048308          121 KQIL-----LNS-EGNSLHV  134 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~  134 (413)
                      ..+.     +.. +|.++..
T Consensus       182 ~~l~~~l~~~~~~~g~tvii  201 (233)
T PRK11629        182 DSIFQLLGELNRLQGTAFLV  201 (233)
T ss_pred             HHHHHHHHHHHHhCCCEEEE
Confidence            9883     222 4766555

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.95  E-value=2.1e-28  Score=232.45  Aligned_cols=158  Identities=28%  Similarity=0.454  Sum_probs=125.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (241)
T cd03256          16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL   93 (241)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence            7899999999999999999999999999999999987  467999999987542       2345799999999999999


Q ss_pred             CHHHHHHHHHH---------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           75 TVTETLVFIAL---------------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        75 Tv~e~l~f~~~---------------------------~~~~--------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      ||+|++.+...                           +++.              +||++||++|+.+|++++|||||+
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  173 (241)
T cd03256          94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA  173 (241)
T ss_pred             cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence            99999976321                           0010              189999999999999999999999


Q ss_pred             CCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          114 GLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      |||+.++..+.     +.. +|+++..-+            |+.+...+.+|+++.+.+|.....+
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~t------------H~~~~~~~~~d~v~~l~~G~i~~~~  227 (241)
T cd03256         174 SLDPASSRQVMDLLKRINREEGITVIVSL------------HQVDLAREYADRIVGLKDGRIVFDG  227 (241)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEEeec
Confidence            99999998883     222 377665532            4444444568888888888765433

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.95  E-value=2.1e-28  Score=230.63  Aligned_cols=153  Identities=25%  Similarity=0.332  Sum_probs=119.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC-----CCCCeeEEEEECCcccCh------hccccEEEEecCCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL-----STGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVF   70 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~-----~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~   70 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+     +  +.+|+|.++|.+...      ..++.++|++|+..+
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   92 (227)
T cd03260          15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP   92 (227)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence            789999999999999999999999999999999998     5  467999999987532      235679999999888


Q ss_pred             CCCCCHHHHHHHHHHc--------------------C-------Cc---------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           71 YLHLTVTETLVFIALF--------------------R-------LP---------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        71 ~~~lTv~e~l~f~~~~--------------------~-------~~---------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      + .+||+||+.+....                    +       .+         +||++||++|+.+|++++|||||+|
T Consensus        93 ~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  171 (227)
T cd03260          93 F-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA  171 (227)
T ss_pred             c-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            8 89999999764211                    0       00         1899999999999999999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ||+.++..+.     +..+ .++..-            .|+.+.....+|+++.+.+|+..
T Consensus       172 LD~~~~~~l~~~l~~~~~~-~tii~~------------sH~~~~~~~~~d~i~~l~~G~i~  219 (227)
T cd03260         172 LDPISTAKIEELIAELKKE-YTIVIV------------THNMQQAARVADRTAFLLNGRLV  219 (227)
T ss_pred             CCHHHHHHHHHHHHHHhhC-cEEEEE------------eccHHHHHHhCCEEEEEeCCEEE
Confidence            9999999883     1223 444442            23333334556777777777653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10908 cell division protein FtsE; Provisional

Probab=99.95  E-value=1.4e-28  Score=231.27  Aligned_cols=156  Identities=25%  Similarity=0.418  Sum_probs=122.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~   94 (222)
T PRK10908         17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR   94 (222)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence            7899999999999999999999999999999999987  468999999986532       1356799999999888899


Q ss_pred             CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |++|++.+....                   ++.              +||++||++|+.+|++++|||||+|||..++.
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  174 (222)
T PRK10908         95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE  174 (222)
T ss_pred             cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence            999999875321                   110              18999999999999999999999999999998


Q ss_pred             HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .+.     +..+|.++..-+            |+.....+.+|+++.+.+|...+
T Consensus       175 ~l~~~l~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        175 GILRLFEEFNRVGVTVLMAT------------HDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHHHHHHHCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEcc
Confidence            873     223466655522            33333345577777776665443

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.95  E-value=3.7e-28  Score=235.17  Aligned_cols=156  Identities=24%  Similarity=0.337  Sum_probs=122.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    .    .++.++|++|+..+++.
T Consensus        39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  116 (269)
T cd03294          39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH  116 (269)
T ss_pred             EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence            6899999999999999999999999999999999987  467999999987532    1    13579999999999999


Q ss_pred             CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+|++.+....                   ++.              +||++||++|+.+|++++|||||+|||..++
T Consensus       117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~  196 (269)
T cd03294         117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR  196 (269)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            9999999875321                   110              1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ..+.     +.+ +|.++..-+            |+.+...+.+|+++.+.+|....
T Consensus       197 ~~l~~~l~~~~~~~g~tiii~t------------H~~~~~~~~~d~v~~l~~G~i~~  241 (269)
T cd03294         197 REMQDELLRLQAELQKTIVFIT------------HDLDEALRLGDRIAIMKDGRLVQ  241 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence            8883     222 366665533            33333345577777777776543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.95  E-value=3.1e-28  Score=231.51  Aligned_cols=156  Identities=28%  Similarity=0.444  Sum_probs=123.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCccCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~~lT   75 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...      ..++.++|++|+..+++.+|
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   93 (240)
T PRK09493         16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT   93 (240)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence            7899999999999999999999999999999999987  467999999987542      23557999999999999999


Q ss_pred             HHHHHHHHHH-c-CC------------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           76 VTETLVFIAL-F-RL------------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        76 v~e~l~f~~~-~-~~------------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |+|++.+... . +.                  .              +||++||++|+.+|++++|||||+|||..++.
T Consensus        94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~  173 (240)
T PRK09493         94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH  173 (240)
T ss_pred             HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            9999987531 1 10                  0              18999999999999999999999999999998


Q ss_pred             HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .+.     +.++|+++..-            .|+.+...+.+|+++.+.+|....
T Consensus       174 ~l~~~l~~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~  216 (240)
T PRK09493        174 EVLKVMQDLAEEGMTMVIV------------THEIGFAEKVASRLIFIDKGRIAE  216 (240)
T ss_pred             HHHHHHHHHHHcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEe
Confidence            883     22356665552            234333345577777777776543

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.4e-28  Score=232.52  Aligned_cols=158  Identities=28%  Similarity=0.439  Sum_probs=125.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   94 (243)
T TIGR02315        17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL   94 (243)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence            7999999999999999999999999999999999987  467999999987532       1356799999999999999


Q ss_pred             CHHHHHHHHHH---------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           75 TVTETLVFIAL---------------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        75 Tv~e~l~f~~~---------------------------~~~~--------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      ||+||+.+...                           +++.              +||++||++|+.+|++++|||||+
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~  174 (243)
T TIGR02315        95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA  174 (243)
T ss_pred             cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            99999975310                           0110              189999999999999999999999


Q ss_pred             CCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          114 GLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      |||+.++..+.     +.+ +|.++..-            .|+.+...+.+|+++.+.+|.....+
T Consensus       175 ~LD~~~~~~l~~~l~~~~~~~~~tiii~------------tH~~~~~~~~~d~v~~l~~G~i~~~~  228 (243)
T TIGR02315       175 SLDPKTSKQVMDYLKRINKEDGITVIIN------------LHQVDLAKKYADRIVGLKAGEIVFDG  228 (243)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEE------------eCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999998883     223 36665552            24444445667888888888765443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4e-28  Score=237.12  Aligned_cols=120  Identities=28%  Similarity=0.464  Sum_probs=102.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCc-cCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNV-FYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~-~~~~l   74 (413)
                      +|+|||+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...      ..++.++||+|++. .+...
T Consensus        22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~   99 (287)
T PRK13637         22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE   99 (287)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence            7999999999999999999999999999999999987  467999999987642      33567999999863 33467


Q ss_pred             CHHHHHHHHHH-------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           75 TVTETLVFIAL-------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        75 Tv~e~l~f~~~-------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+|++.|...                   ++++                +||+.||++|+.+|++++|||||+|||+.+
T Consensus       100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~  179 (287)
T PRK13637        100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG  179 (287)
T ss_pred             cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence            99999987431                   1221                189999999999999999999999999999


Q ss_pred             HHHH
Q 048308          120 AKQI  123 (413)
Q Consensus       120 ~~~i  123 (413)
                      +.++
T Consensus       180 ~~~l  183 (287)
T PRK13637        180 RDEI  183 (287)
T ss_pred             HHHH
Confidence            9887

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.95  E-value=3.4e-28  Score=232.53  Aligned_cols=156  Identities=29%  Similarity=0.439  Sum_probs=122.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------------hccccEEEEecCCc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------------TVKRKTGFVAHSNV   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------------~~~~~~~~v~q~~~   69 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...            ..++.++|++|+..
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~   95 (250)
T PRK11264         18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN   95 (250)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence            7899999999999999999999999999999999987  467999999986531            23457999999999


Q ss_pred             cCCCCCHHHHHHHHHH-c-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           70 FYLHLTVTETLVFIAL-F-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        70 ~~~~lTv~e~l~f~~~-~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      +++.+||+||+.+... .                   ++.              +||++||++|+.+|++++|||||+||
T Consensus        96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~L  175 (250)
T PRK11264         96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL  175 (250)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            9999999999976321 0                   110              18999999999999999999999999


Q ss_pred             CHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          116 DSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       116 D~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |+.++..+.     +..+|.++..-+            |+.+...+.+|+++.+.+|....
T Consensus       176 D~~~~~~l~~~l~~~~~~~~tvi~~t------------H~~~~~~~~~d~i~~l~~G~i~~  224 (250)
T PRK11264        176 DPELVGEVLNTIRQLAQEKRTMVIVT------------HEMSFARDVADRAIFMDQGRIVE  224 (250)
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence            999998884     234576665532            33333335577777777776543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.95  E-value=2.3e-28  Score=225.48  Aligned_cols=131  Identities=46%  Similarity=0.709  Sum_probs=113.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC--CCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL--STGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|.+  +  +.+|+|.++|++... ..++.++|++|+..+++.+|++|
T Consensus        24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~  101 (194)
T cd03213          24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE  101 (194)
T ss_pred             ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence            789999999999999999999999999999999998  6  467999999987754 34567999999999999999999


Q ss_pred             HHHHHHHc-CCc---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           79 TLVFIALF-RLP---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        79 ~l~f~~~~-~~~---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ++.+.... .++   +||+.||++|+.+|++++|||||+|||..++..+.     +..+|+++..
T Consensus       102 ~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii  166 (194)
T cd03213         102 TLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC  166 (194)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            99886643 332   48999999999999999999999999999998883     2234776655

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=3.4e-28  Score=237.98  Aligned_cols=119  Identities=31%  Similarity=0.528  Sum_probs=101.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCC--ccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSN--VFY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~--~~~   71 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|+++..        ..++.++||+|+.  .++
T Consensus        22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   99 (290)
T PRK13634         22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF   99 (290)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence            7999999999999999999999999999999999987  467999999987631        3356799999985  344


Q ss_pred             CCCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           72 LHLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        72 ~~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                       ..||+||+.|...                   ++++               +||++||++|+.+|++++|||||+|||+
T Consensus       100 -~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~  178 (290)
T PRK13634        100 -EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP  178 (290)
T ss_pred             -hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence             5799999987532                   1221               1899999999999999999999999999


Q ss_pred             HHHHHH
Q 048308          118 TIAKQI  123 (413)
Q Consensus       118 ~~~~~i  123 (413)
                      .++..+
T Consensus       179 ~~~~~l  184 (290)
T PRK13634        179 KGRKEM  184 (290)
T ss_pred             HHHHHH
Confidence            999877

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=1.1e-28  Score=229.92  Aligned_cols=132  Identities=33%  Similarity=0.526  Sum_probs=108.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+.. .++.+|+
T Consensus        16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~   93 (211)
T cd03225          16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV   93 (211)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence            7899999999999999999999999999999999987  467999999986532    34567999999974 4667899


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.+....                   +++              +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~  173 (211)
T cd03225          94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL  173 (211)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            9999874321                   110              1899999999999999999999999999999888


Q ss_pred             H-----HhcCCcEEEec
Q 048308          124 L-----LNSEGNSLHVG  135 (413)
Q Consensus       124 ~-----ll~~G~~v~~G  135 (413)
                      .     +..+|.++..-
T Consensus       174 ~~~l~~~~~~~~tvi~~  190 (211)
T cd03225         174 LELLKKLKAEGKTIIIV  190 (211)
T ss_pred             HHHHHHHHHcCCEEEEE
Confidence            3     22357666553

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.6e-28  Score=233.12  Aligned_cols=156  Identities=28%  Similarity=0.437  Sum_probs=124.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...     ..++.++|++|+..+++.+||
T Consensus        20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (237)
T PRK11614         20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV   97 (237)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence            7899999999999999999999999999999999987  467999999987642     235579999999999999999


Q ss_pred             HHHHHHHHHcC------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           77 TETLVFIALFR------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        77 ~e~l~f~~~~~------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +||+.+.....                  +.              +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus        98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~  177 (237)
T PRK11614         98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF  177 (237)
T ss_pred             HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence            99997642110                  10              18999999999999999999999999999998883


Q ss_pred             -----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          125 -----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       125 -----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                           +.++|.++..-+            |+.......+|+++.+.+|+...
T Consensus       178 ~~l~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~  217 (237)
T PRK11614        178 DTIEQLREQGMTIFLVE------------QNANQALKLADRGYVLENGHVVL  217 (237)
T ss_pred             HHHHHHHHCCCEEEEEe------------CcHHHHHhhCCEEEEEeCCEEEe
Confidence                 234577766532            33333345678888877776543

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.95  E-value=5.5e-29  Score=226.45  Aligned_cols=130  Identities=32%  Similarity=0.527  Sum_probs=109.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCccCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~~lT   75 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...      ..++.++|++|++.+++.+|
T Consensus        15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   92 (178)
T cd03229          15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT   92 (178)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCC
Confidence            6899999999999999999999999999999999987  468999999986532      34567999999998888999


Q ss_pred             HHHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcC-CcEEEe
Q 048308           76 VTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSE-GNSLHV  134 (413)
Q Consensus        76 v~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~-G~~v~~  134 (413)
                      ++|++.+. .-...+||++||++|+.+|++++|||||+|||+.++..+.     +.++ |+++..
T Consensus        93 ~~~~l~~~-lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii  156 (178)
T cd03229          93 VLENIALG-LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL  156 (178)
T ss_pred             HHHheeec-CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            99998754 1112359999999999999999999999999999999884     2334 565544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.1e-27  Score=233.10  Aligned_cols=120  Identities=26%  Similarity=0.382  Sum_probs=103.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCC-ccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSN-VFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~-~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+..+    ..++.++|++|++ ..++..||
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv   99 (279)
T PRK13650         22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV   99 (279)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence            7999999999999999999999999999999999987  467999999987642    3456799999996 46778899


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.|....                   ++.              +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l  179 (279)
T PRK13650        100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL  179 (279)
T ss_pred             HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence            9999875321                   110              1899999999999999999999999999999887

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.95  E-value=2.4e-28  Score=227.91  Aligned_cols=131  Identities=34%  Similarity=0.552  Sum_probs=109.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCccCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~~lT   75 (413)
                      +|+|+|++++|||+++|+||||||||||+|+|+|.++  +.+|+|.++|++..      ...++.++|++|+..+++.+|
T Consensus        15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   92 (213)
T cd03262          15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT   92 (213)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence            7899999999999999999999999999999999987  46799999998752      124567999999999999999


Q ss_pred             HHHHHHHHHH-c-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           76 VTETLVFIAL-F-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        76 v~e~l~f~~~-~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ++|++.+... .                   +++              +||++||++|+.+|++++|||||+|||+.++.
T Consensus        93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~  172 (213)
T cd03262          93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG  172 (213)
T ss_pred             HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence            9999976421 0                   110              18999999999999999999999999999998


Q ss_pred             HHH-----HhcCCcEEEe
Q 048308          122 QIL-----LNSEGNSLHV  134 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~  134 (413)
                      .+.     +.++|.++..
T Consensus       173 ~l~~~l~~~~~~~~tvi~  190 (213)
T cd03262         173 EVLDVMKDLAEEGMTMVV  190 (213)
T ss_pred             HHHHHHHHHHHcCCEEEE
Confidence            873     2235766555

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.95  E-value=7.9e-28  Score=226.28  Aligned_cols=155  Identities=28%  Similarity=0.422  Sum_probs=124.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+......+.++|++|++.+++.+|++|++.
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~   92 (223)
T TIGR03740        15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK   92 (223)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence            6899999999999999999999999999999999987  46799999998765332357999999999899999999997


Q ss_pred             HHHHcC---------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc
Q 048308           82 FIALFR---------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS  127 (413)
Q Consensus        82 f~~~~~---------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~  127 (413)
                      +.....               +.              +||++||++++.+|++++|||||+|||..++..+.     +..
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~  172 (223)
T TIGR03740        93 VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE  172 (223)
T ss_pred             HHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH
Confidence            654221               11              18999999999999999999999999999998883     223


Q ss_pred             CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          128 EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       128 ~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +|.++..-+            |+.....+.+|+++.+.+|...
T Consensus       173 ~~~tiii~s------------H~~~~~~~~~d~i~~l~~g~i~  203 (223)
T TIGR03740       173 QGITVILSS------------HILSEVQQLADHIGIISEGVLG  203 (223)
T ss_pred             CCCEEEEEc------------CCHHHHHHhcCEEEEEeCCEEE
Confidence            576655532            3333334567788777777654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.95  E-value=2.5e-28  Score=229.94  Aligned_cols=153  Identities=29%  Similarity=0.408  Sum_probs=118.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...       ..++.++|++|+.  .+++
T Consensus        20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (228)
T cd03257          20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP   97 (228)
T ss_pred             eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence            7899999999999999999999999999999999987  467999999987632       2356799999998  4667


Q ss_pred             CCCHHHHHHHHHH---------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIAL---------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~---------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      .+||+||+.+...                     ++++               +||++||++|+.+|++++|||||+|||
T Consensus        98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD  177 (228)
T cd03257          98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD  177 (228)
T ss_pred             cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence            8999999865321                     1111               189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308          117 STIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV  168 (413)
Q Consensus       117 ~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~  168 (413)
                      +.++..+.     +..+ |.++..-+            |+.+...+.+|+++.+.+|+
T Consensus       178 ~~~~~~l~~~l~~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~G~  223 (228)
T cd03257         178 VSVQAQILDLLKKLQEELGLTLLFIT------------HDLGVVAKIADRVAVMYAGK  223 (228)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEe------------CCHHHHHHhcCeEEEEeCCE
Confidence            99998883     2233 76665532            23222234466666665554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.4e-28  Score=230.28  Aligned_cols=158  Identities=22%  Similarity=0.306  Sum_probs=123.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh----hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++.   +.+|+|.++|.+...    ..++.++|++|+..+++.+
T Consensus        18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~   97 (250)
T PRK14247         18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL   97 (250)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence            689999999999999999999999999999999998642   368999999987632    3456799999999888999


Q ss_pred             CHHHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           75 TVTETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        75 Tv~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      ||+||+.+....                     ++.                  +||++||++|+.+|++++|||||+||
T Consensus        98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~L  177 (250)
T PRK14247         98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL  177 (250)
T ss_pred             cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence            999999764311                     110                  18999999999999999999999999


Q ss_pred             CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |+.++..+.    -+.+|.++..-            .|+.....+.+|+++.+.+|....
T Consensus       178 D~~~~~~l~~~l~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14247        178 DPENTAKIESLFLELKKDMTIVLV------------THFPQQAARISDYVAFLYKGQIVE  225 (250)
T ss_pred             CHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhcCEEEEEECCeEEE
Confidence            999998883    11345555442            234333345677777777776543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=8.8e-28  Score=233.20  Aligned_cols=120  Identities=31%  Similarity=0.407  Sum_probs=102.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|++. .++..||
T Consensus        20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   97 (274)
T PRK13647         20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV   97 (274)
T ss_pred             eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcH
Confidence            7899999999999999999999999999999999987  467999999987642    23567999999862 4456899


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +|++.|....                   ++.              +||+.||++|+.+|++++|||||+|||+.++.++
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l  177 (274)
T PRK13647         98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL  177 (274)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence            9999875321                   110              1899999999999999999999999999999887

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.95  E-value=6.1e-28  Score=227.98  Aligned_cols=157  Identities=27%  Similarity=0.392  Sum_probs=124.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...     ..++.++|++|+..+++.+|+
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (230)
T TIGR03410        15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV   92 (230)
T ss_pred             EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence            7899999999999999999999999999999999987  467999999987532     124579999999999999999


Q ss_pred             HHHHHHHHHcCC-----------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           77 TETLVFIALFRL-----------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        77 ~e~l~f~~~~~~-----------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      +|++.+......                 +              +||+.||++|+.+|++++|||||+|||+.++..+. 
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~  172 (230)
T TIGR03410        93 EENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR  172 (230)
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence            999987532210                 0              18999999999999999999999999999999883 


Q ss_pred             -H---hc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          125 -L---NS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       125 -l---l~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                       +   .. .|.++..-+            |+.+...+.+|+++.+.+|+....
T Consensus       173 ~l~~~~~~~~~tii~~s------------H~~~~~~~~~d~v~~l~~g~i~~~  213 (230)
T TIGR03410       173 VIRRLRAEGGMAILLVE------------QYLDFARELADRYYVMERGRVVAS  213 (230)
T ss_pred             HHHHHHHcCCcEEEEEe------------CCHHHHHHhCCEEEEEECCEEEEE
Confidence             2   22 266665532            333333456788888887765443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.95  E-value=7.2e-28  Score=229.36  Aligned_cols=156  Identities=28%  Similarity=0.456  Sum_probs=123.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|++.+++.+||+
T Consensus        16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (242)
T cd03295          16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE   93 (242)
T ss_pred             EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence            7899999999999999999999999999999999987  467999999987532    3355799999999999999999


Q ss_pred             HHHHHHHH-------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           78 ETLVFIAL-------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        78 e~l~f~~~-------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      ||+.+...                   ++++                +||++||++|+.+|++++|||||+|||+.++..
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  173 (242)
T cd03295          94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ  173 (242)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence            99976421                   1121                179999999999999999999999999999988


Q ss_pred             HH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          123 IL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       123 i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +.     +..+ |.++..-+            |+.+.....+|+++.+.+|.+..
T Consensus       174 l~~~L~~~~~~~g~tvii~s------------H~~~~~~~~~d~i~~l~~G~i~~  216 (242)
T cd03295         174 LQEEFKRLQQELGKTIVFVT------------HDIDEAFRLADRIAIMKNGEIVQ  216 (242)
T ss_pred             HHHHHHHHHHHcCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEEE
Confidence            73     2223 77655532            33333345567777777776543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.1e-28  Score=229.20  Aligned_cols=156  Identities=24%  Similarity=0.425  Sum_probs=122.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...     ..++.++|++|++.+++.+||
T Consensus        18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   95 (241)
T PRK10895         18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV   95 (241)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence            7899999999999999999999999999999999987  467999999987532     234679999999999999999


Q ss_pred             HHHHHHHHHcC--Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           77 TETLVFIALFR--LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        77 ~e~l~f~~~~~--~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      +||+.+.....  .+                                +||++||++|+.+|++++|||||+|||+.++..
T Consensus        96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (241)
T PRK10895         96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID  175 (241)
T ss_pred             HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            99998753221  00                                189999999999999999999999999999987


Q ss_pred             HH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          123 IL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       123 i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +.     +.++|.++..-+            |+.....+.+|+++.+.+|+...
T Consensus       176 l~~~l~~~~~~g~tiii~s------------H~~~~~~~~~d~v~~l~~G~i~~  217 (241)
T PRK10895        176 IKRIIEHLRDSGLGVLITD------------HNVRETLAVCERAYIVSQGHLIA  217 (241)
T ss_pred             HHHHHHHHHhcCCEEEEEE------------cCHHHHHHhcCEEEEEeCCeEEe
Confidence            72     223577665533            23222334567777777776543

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.95  E-value=7.7e-28  Score=224.38  Aligned_cols=120  Identities=33%  Similarity=0.527  Sum_probs=104.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +++|+|+++++| +++|+||||||||||+++|+|.++  +.+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   91 (211)
T cd03264          15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE   91 (211)
T ss_pred             EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence            789999999999 999999999999999999999987  468999999987542   34567999999999999999999


Q ss_pred             HHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           79 TLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        79 ~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      ++.+....                   +++              +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  170 (211)
T cd03264          92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR  170 (211)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            99874321                   110              18999999999999999999999999999998883

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.95  E-value=1.2e-27  Score=227.07  Aligned_cols=157  Identities=32%  Similarity=0.428  Sum_probs=124.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...   ...+.++|++|+..+++.+|++|
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~   93 (236)
T TIGR03864        16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ   93 (236)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence            6899999999999999999999999999999999987  467999999986532   22357999999998888999999


Q ss_pred             HHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           79 TLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        79 ~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      ++.+....+                   ++              +||+.||++|+.+|++++|||||+|||+.++..+. 
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~  173 (236)
T TIGR03864        94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA  173 (236)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence            997653211                   10              18999999999999999999999999999999883 


Q ss_pred             ----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          125 ----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       125 ----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                          +.+ +|.++..-            .|+.+.... +|+++.+.+|......
T Consensus       174 ~l~~~~~~~~~tiii~------------sH~~~~~~~-~d~i~~l~~G~i~~~~  214 (236)
T TIGR03864       174 HVRALCRDQGLSVLWA------------THLVDEIEA-DDRLVVLHRGRVLADG  214 (236)
T ss_pred             HHHHHHHhCCCEEEEE------------ecChhhHhh-CCEEEEEeCCeEEEeC
Confidence                222 46665552            344444443 8888888888765443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.95  E-value=1.2e-27  Score=225.57  Aligned_cols=135  Identities=38%  Similarity=0.586  Sum_probs=112.0

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      ++++|+|+++++||+++|+||||||||||+|+|+|.+++ .+.+|+|.++|.+... ..++.++|++|++.+++.+||+|
T Consensus        21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  100 (226)
T cd03234          21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRE  100 (226)
T ss_pred             ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHH
Confidence            378999999999999999999999999999999999862 1367999999987653 45667999999999999999999


Q ss_pred             HHHHHHHcC------------------Cc-------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           79 TLVFIALFR------------------LP-------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        79 ~l~f~~~~~------------------~~-------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |+.+.....                  ++                   +||++||++|+.+|++++|||||+|||+.++.
T Consensus       101 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~  180 (226)
T cd03234         101 TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL  180 (226)
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHH
Confidence            998753211                  00                   18999999999999999999999999999999


Q ss_pred             HHH-----HhcCCcEEEec
Q 048308          122 QIL-----LNSEGNSLHVG  135 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~G  135 (413)
                      .+.     +..+|.++..-
T Consensus       181 ~~~~~l~~~~~~~~tiii~  199 (226)
T cd03234         181 NLVSTLSQLARRNRIVILT  199 (226)
T ss_pred             HHHHHHHHHHHCCCEEEEE
Confidence            883     22356665553

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.95  E-value=9.9e-28  Score=232.17  Aligned_cols=155  Identities=25%  Similarity=0.445  Sum_probs=121.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...       ..++.++|++|+..+++.+
T Consensus        22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   99 (269)
T PRK11831         22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM   99 (269)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence            6899999999999999999999999999999999987  467999999987532       1245699999999999999


Q ss_pred             CHHHHHHHHHHc--------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           75 TVTETLVFIALF--------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        75 Tv~e~l~f~~~~--------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+||+.+....                    +++              +||+.||++|+.+|++++|||||+|||+.++
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  179 (269)
T PRK11831        100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM  179 (269)
T ss_pred             CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            999999764211                    111              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          121 KQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       121 ~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ..+.     +.++ |.++..-+            |+.+.....+|+++.+.+|...
T Consensus       180 ~~l~~~l~~~~~~~g~tiiivs------------H~~~~~~~~~d~v~~l~~G~i~  223 (269)
T PRK11831        180 GVLVKLISELNSALGVTCVVVS------------HDVPEVLSIADHAYIVADKKIV  223 (269)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEe------------cCHHHHHHhhCEEEEEECCEEE
Confidence            9873     2233 66655532            2322333456777777776654

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=9.1e-28  Score=233.68  Aligned_cols=120  Identities=31%  Similarity=0.417  Sum_probs=103.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCC-ccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSN-VFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~-~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.++|++...    ..++.++|++|+. ..++..||
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv   99 (279)
T PRK13635         22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV   99 (279)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence            78999999999999999999999999999999999874  67999999987642    3356799999997 36677899


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.+....                   ++.              +||++||++|+.+|++++|||||+|||+.++..+
T Consensus       100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l  179 (279)
T PRK13635        100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV  179 (279)
T ss_pred             HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            9999875321                   110              1899999999999999999999999999999888

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=229.14  Aligned_cols=158  Identities=24%  Similarity=0.353  Sum_probs=122.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++.   +.+|+|.++|.+..      ...++.++|++|+..+++
T Consensus        19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (253)
T PRK14267         19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFP   98 (253)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCC
Confidence            789999999999999999999999999999999998753   35899999998753      123557999999999999


Q ss_pred             CCCHHHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           73 HLTVTETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        73 ~lTv~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      .+||+||+.+....                     ++.                  +||+.||++|+.+|++++|||||+
T Consensus        99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  178 (253)
T PRK14267         99 HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA  178 (253)
T ss_pred             CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            99999999864311                     110                  189999999999999999999999


Q ss_pred             CCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          114 GLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       114 gLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |||+.++..+.    -+.+|.++..-            .|+.+.....+|+++.+.+|+...
T Consensus       179 ~LD~~~~~~l~~~l~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~  228 (253)
T PRK14267        179 NIDPVGTAKIEELLFELKKEYTIVLV------------THSPAQAARVSDYVAFLYLGKLIE  228 (253)
T ss_pred             cCCHHHHHHHHHHHHHHhhCCEEEEE------------ECCHHHHHhhCCEEEEEECCEEEE
Confidence            99999998883    11234544442            233333345577777777776543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.95  E-value=2.2e-28  Score=217.37  Aligned_cols=116  Identities=33%  Similarity=0.478  Sum_probs=102.1

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--hhccccEEEEecCCccCCCCCHHHHHHHH
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--RTVKRKTGFVAHSNVFYLHLTVTETLVFI   83 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~f~   83 (413)
                      .+..+++||++||+||||||||||||.|+|...  +.+|+|++||.+..  ....|.++.++|+..+|.++||.+|+-+.
T Consensus        18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG   95 (231)
T COG3840          18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG   95 (231)
T ss_pred             EEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence            567889999999999999999999999999987  47799999999875  35678899999999999999999999764


Q ss_pred             HHc--------------------------CCc-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           84 ALF--------------------------RLP-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        84 ~~~--------------------------~~~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ..-                          |+|       +|||++||+|+.+-+|++||||+|.||+.-+.++
T Consensus        96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM  168 (231)
T COG3840          96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM  168 (231)
T ss_pred             CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH
Confidence            211                          222       2899999999999999999999999999999877

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.5e-27  Score=230.81  Aligned_cols=154  Identities=26%  Similarity=0.358  Sum_probs=119.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+.. +++..|+
T Consensus        24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v  101 (269)
T PRK13648         24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV  101 (269)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccH
Confidence            7899999999999999999999999999999999987  467999999987632    34567999999974 6778899


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ++++.+....                   ++.              +||++||++|+.+|++++|||||+|||+.++..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l  181 (269)
T PRK13648        102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL  181 (269)
T ss_pred             HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            9998764321                   110              1899999999999999999999999999999988


Q ss_pred             H-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          124 L-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       124 ~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .     +.. +|.++..-            .|+...... +|+++.+.+|++.
T Consensus       182 ~~~L~~~~~~~~~tiiiv------------tH~~~~~~~-~d~i~~l~~G~i~  221 (269)
T PRK13648        182 LDLVRKVKSEHNITIISI------------THDLSEAME-ADHVIVMNKGTVY  221 (269)
T ss_pred             HHHHHHHHHhcCCEEEEE------------ecCchHHhc-CCEEEEEECCEEE
Confidence            3     112 26665442            233333334 6777777666543

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.2e-27  Score=237.05  Aligned_cols=119  Identities=27%  Similarity=0.438  Sum_probs=101.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------------------hccccE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------------------TVKRKT   61 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------------------~~~~~~   61 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|+++  +.+|+|.++|.+..+                    ..++.+
T Consensus        41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  118 (320)
T PRK13631         41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV  118 (320)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence            7999999999999999999999999999999999987  467999999976421                    235679


Q ss_pred             EEEecCC--ccCCCCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCE
Q 048308           62 GFVAHSN--VFYLHLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSL  105 (413)
Q Consensus        62 ~~v~q~~--~~~~~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~l  105 (413)
                      +||+|++  .+++ .||+||+.|...                   ++++               +||++||++|+.+|++
T Consensus       119 g~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i  197 (320)
T PRK13631        119 SMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI  197 (320)
T ss_pred             EEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            9999986  4554 599999987532                   1121               1899999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHH
Q 048308          106 LFLDEPASGLDSTIAKQI  123 (413)
Q Consensus       106 lllDEPtsgLD~~~~~~i  123 (413)
                      ++|||||+|||+.++..+
T Consensus       198 LLLDEPtsgLD~~~~~~l  215 (320)
T PRK13631        198 LIFDEPTAGLDPKGEHEM  215 (320)
T ss_pred             EEEECCccCCCHHHHHHH
Confidence            999999999999999887

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.4e-27  Score=228.11  Aligned_cols=157  Identities=22%  Similarity=0.310  Sum_probs=120.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +++|+|+++++||+++|+|+||||||||+|+|+|.+++.   ..+|+|.++|++...      ..++.++|++|+..+++
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   95 (247)
T TIGR00972        16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP   95 (247)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence            689999999999999999999999999999999998742   128999999987632      23567999999988888


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       +|++||+.+....                    ++.                  +||++||++|+.+|++++|||||+|
T Consensus        96 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~  174 (247)
T TIGR00972        96 -MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA  174 (247)
T ss_pred             -CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence             9999999864321                    121                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+.    -+.++.++..-            .|+.....+.+|+++.+.+|....
T Consensus       175 LD~~~~~~l~~~l~~~~~~~tiiiv------------sH~~~~~~~~~d~i~~l~~G~i~~  223 (247)
T TIGR00972       175 LDPIATGKIEELIQELKKKYTIVIV------------THNMQQAARISDRTAFFYDGELVE  223 (247)
T ss_pred             CCHHHHHHHHHHHHHHHhcCeEEEE------------ecCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998883    12234444332            233333345567777777766543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.95  E-value=7e-28  Score=244.72  Aligned_cols=120  Identities=26%  Similarity=0.421  Sum_probs=104.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++||+|+..+++.+||+
T Consensus        18 vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~   95 (402)
T PRK09536         18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR   95 (402)
T ss_pred             EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence            7899999999999999999999999999999999987  467999999987642    3456799999999998999999


Q ss_pred             HHHHHHHH-----cC-Cc-------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL-----FR-LP-------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~-----~~-~~-------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |++.+...     +. .+                               +||+.||++|+.+|++|+|||||+|||+.++
T Consensus        96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~  175 (402)
T PRK09536         96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ  175 (402)
T ss_pred             HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence            99976421     11 00                               1899999999999999999999999999998


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      .++
T Consensus       176 ~~l  178 (402)
T PRK09536        176 VRT  178 (402)
T ss_pred             HHH
Confidence            877

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.2e-27  Score=242.88  Aligned_cols=120  Identities=30%  Similarity=0.430  Sum_probs=104.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|+++  +.+|+|.++|.++..    .    .++.++|++|+..++++
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~  120 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH  120 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence            5899999999999999999999999999999999987  467999999987642    1    23579999999999999


Q ss_pred             CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+||+.+....+                   +.              +||+.||++|+.+|++++|||||+|||+.++
T Consensus       121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r  200 (400)
T PRK10070        121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR  200 (400)
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence            99999998764321                   10              1899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      .++
T Consensus       201 ~~l  203 (400)
T PRK10070        201 TEM  203 (400)
T ss_pred             HHH
Confidence            887

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.95  E-value=2.7e-27  Score=217.26  Aligned_cols=132  Identities=33%  Similarity=0.531  Sum_probs=106.9

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h----hccccEEEEecCCc-cCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R----TVKRKTGFVAHSNV-FYLH   73 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~----~~~~~~~~v~q~~~-~~~~   73 (413)
                      .+|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+..  +    ..++.++|++|+.. .+..
T Consensus         6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   83 (190)
T TIGR01166         6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA   83 (190)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence            37999999999999999999999999999999999987  46799999998753  1    23557999999963 2335


Q ss_pred             CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      .||+||+.+....                   +++              +||+.||++|+.+|++++|||||+|||+.++
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            7999999875321                   110              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEe
Q 048308          121 KQIL-----LNSEGNSLHV  134 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~  134 (413)
                      ..+.     +.++|.++..
T Consensus       164 ~~~~~~l~~~~~~~~tili  182 (190)
T TIGR01166       164 EQMLAILRRLRAEGMTVVI  182 (190)
T ss_pred             HHHHHHHHHHHHcCCEEEE
Confidence            9883     2234665544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.5e-27  Score=228.71  Aligned_cols=158  Identities=25%  Similarity=0.343  Sum_probs=122.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|.+++.   +.+|+|.++|.+..      ...++.++|++|+..+++
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  101 (254)
T PRK14273         22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL  101 (254)
T ss_pred             eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence            789999999999999999999999999999999998742   25899999998653      124567999999988774


Q ss_pred             CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       +||+||+.+....                    ++    +              +||++||++|+.+|++++|||||+|
T Consensus       102 -~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~  180 (254)
T PRK14273        102 -MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA  180 (254)
T ss_pred             -CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence             8999999874321                    11    0              1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ||+.++..+.    -+.+|.++..-            .|+.....+.+|+++.+.+|.+...
T Consensus       181 LD~~~~~~l~~~l~~~~~~~tvii~------------sH~~~~~~~~~d~i~~l~~G~i~~~  230 (254)
T PRK14273        181 LDPISTGKIEELIINLKESYTIIIV------------THNMQQAGRISDRTAFFLNGCIEEE  230 (254)
T ss_pred             cCHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999998883    22345544432            2333333456777777777766443

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=3e-27  Score=218.86  Aligned_cols=131  Identities=27%  Similarity=0.409  Sum_probs=110.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...   ..++.++|++|+..+++.+||+|
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   93 (200)
T PRK13540         16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE   93 (200)
T ss_pred             EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHH
Confidence            7899999999999999999999999999999999987  467999999987642   34567999999988888999999


Q ss_pred             HHHHHHHc--------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308           79 TLVFIALF--------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L  125 (413)
Q Consensus        79 ~l~f~~~~--------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l  125 (413)
                      ++.+....              +++              +||++||++++.+|++++|||||+|||..++..+.     +
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~  173 (200)
T PRK13540         94 NCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH  173 (200)
T ss_pred             HHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            99875311              111              18999999999999999999999999999999883     2


Q ss_pred             hcCCcEEEe
Q 048308          126 NSEGNSLHV  134 (413)
Q Consensus       126 l~~G~~v~~  134 (413)
                      ..+|.++..
T Consensus       174 ~~~~~tiii  182 (200)
T PRK13540        174 RAKGGAVLL  182 (200)
T ss_pred             HHcCCEEEE
Confidence            235766655

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.95  E-value=3.5e-28  Score=220.17  Aligned_cols=126  Identities=29%  Similarity=0.468  Sum_probs=106.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+..+    ..++.++|++|+..+++ .||+
T Consensus        17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~   93 (173)
T cd03246          17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIA   93 (173)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHH
Confidence            7899999999999999999999999999999999987  467999999987642    34567999999988877 4999


Q ss_pred             HHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           78 ETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        78 e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ||+ +   -...+||+.||++|+.+|++++|||||+|||+.++..+.     +..+|.++..
T Consensus        94 ~~l-L---S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~  151 (173)
T cd03246          94 ENI-L---SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV  151 (173)
T ss_pred             HHC-c---CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            998 1   112349999999999999999999999999999999883     2235766555

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.3e-27  Score=233.28  Aligned_cols=119  Identities=24%  Similarity=0.475  Sum_probs=101.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCC--ccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSN--VFY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~--~~~   71 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.++..        ..++.++||+|++  .++
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   99 (286)
T PRK13646         22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF   99 (286)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence            8999999999999999999999999999999999987  467999999987531        3456799999985  455


Q ss_pred             CCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           72 LHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        72 ~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      + .||+|++.|....                   ++.               +||++||++|+.+|++++|||||+|||+
T Consensus       100 ~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~  178 (286)
T PRK13646        100 E-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP  178 (286)
T ss_pred             h-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence            4 5999999875321                   111               1899999999999999999999999999


Q ss_pred             HHHHHH
Q 048308          118 TIAKQI  123 (413)
Q Consensus       118 ~~~~~i  123 (413)
                      .++..+
T Consensus       179 ~~~~~l  184 (286)
T PRK13646        179 QSKRQV  184 (286)
T ss_pred             HHHHHH
Confidence            999887

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.6e-27  Score=228.31  Aligned_cols=156  Identities=26%  Similarity=0.379  Sum_probs=123.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----------------hccccEEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------------TVKRKTGFV   64 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------------~~~~~~~~v   64 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...                 ..++.++|+
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v   92 (252)
T TIGR03005        15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV   92 (252)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence            7899999999999999999999999999999999987  467999999986531                 235679999


Q ss_pred             ecCCccCCCCCHHHHHHHHHHc--------------------CCc--------------hhHHHHHHHHhhCCCEEEEeC
Q 048308           65 AHSNVFYLHLTVTETLVFIALF--------------------RLP--------------IKRVSRAQELLINPSLLFLDE  110 (413)
Q Consensus        65 ~q~~~~~~~lTv~e~l~f~~~~--------------------~~~--------------~krvsia~~l~~~p~llllDE  110 (413)
                      +|+..+++..|++||+.+....                    +++              +||++||++|+.+|++++|||
T Consensus        93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  172 (252)
T TIGR03005        93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE  172 (252)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            9999999999999999874210                    110              189999999999999999999


Q ss_pred             CCCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          111 PASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       111 PtsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+|||+.++..+.     +.+ .|.++..-            .|+.+...+.+|+++.+.+|++..
T Consensus       173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv------------sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T TIGR03005       173 VTSALDPELVGEVLNVIRRLASEHDLTMLLV------------THEMGFAREFADRVCFFDKGRIVE  227 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEEE------------eCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999998873     223 37665552            233333345578888887777544

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.95  E-value=1.4e-27  Score=227.22  Aligned_cols=157  Identities=24%  Similarity=0.322  Sum_probs=123.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...     ..++.++|++|+..+++.+||
T Consensus        17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (242)
T TIGR03411        17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV   94 (242)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence            7899999999999999999999999999999999987  467999999987532     123469999999999999999


Q ss_pred             HHHHHHHHHc---------------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           77 TETLVFIALF---------------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        77 ~e~l~f~~~~---------------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      +||+.+....                           +++              +||+.||++|+.+|++++|||||+||
T Consensus        95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L  174 (242)
T TIGR03411        95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM  174 (242)
T ss_pred             HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence            9999874321                           000              18999999999999999999999999


Q ss_pred             CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      |+.++..+.    -+.+|+++..-+            |+.....+.+|+++.+.+|.....
T Consensus       175 D~~~~~~l~~~l~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~~~~~  223 (242)
T TIGR03411       175 TDEETEKTAELLKSLAGKHSVVVVE------------HDMEFVRSIADKVTVLHQGSVLAE  223 (242)
T ss_pred             CHHHHHHHHHHHHHHhcCCEEEEEE------------CCHHHHHHhCCEEEEEECCeEEee
Confidence            999998883    123455544422            333333456788888877776543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.95  E-value=1.3e-27  Score=230.03  Aligned_cols=153  Identities=25%  Similarity=0.354  Sum_probs=119.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+.. ..++.++|++|+..+++.+||+||+.
T Consensus        27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~  103 (257)
T PRK11247         27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVG  103 (257)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHH
Confidence            7899999999999999999999999999999999987  46799999987653 34567999999999999999999997


Q ss_pred             HHHH-------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc-C
Q 048308           82 FIAL-------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS-E  128 (413)
Q Consensus        82 f~~~-------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~-~  128 (413)
                      +...             +++.              +||+.||++|+.+|++++|||||+|||+.++..+.     +.. +
T Consensus       104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~  183 (257)
T PRK11247        104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH  183 (257)
T ss_pred             hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            6421             1111              28999999999999999999999999999998883     222 3


Q ss_pred             CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          129 GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       129 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      |.++..-+            |+.....+.+|+++.+.+|.+
T Consensus       184 ~~tviivs------------Hd~~~~~~~~d~i~~l~~G~i  212 (257)
T PRK11247        184 GFTVLLVT------------HDVSEAVAMADRVLLIEEGKI  212 (257)
T ss_pred             CCEEEEEe------------CCHHHHHHhCCEEEEEECCEE
Confidence            66554422            333323344666666666654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.9e-27  Score=226.42  Aligned_cols=155  Identities=30%  Similarity=0.461  Sum_probs=121.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----------hhccccEEEEecCCccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----------RTVKRKTGFVAHSNVFY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----------~~~~~~~~~v~q~~~~~   71 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+..          ...++.++|++|+..++
T Consensus        17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~   94 (242)
T PRK11124         17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW   94 (242)
T ss_pred             eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence            7899999999999999999999999999999999987  46799999998642          12345799999999999


Q ss_pred             CCCCHHHHHHHH-HH-------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           72 LHLTVTETLVFI-AL-------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        72 ~~lTv~e~l~f~-~~-------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +.+||+||+.+. ..                   ++++              +||++||++|+.+|++++|||||+|||.
T Consensus        95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~  174 (242)
T PRK11124         95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP  174 (242)
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence            999999999642 11                   1111              1899999999999999999999999999


Q ss_pred             HHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          118 TIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       118 ~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .++..+.     +..+|.++..-            .|+.....+.+|+++.+.+|...
T Consensus       175 ~~~~~l~~~l~~~~~~~~tii~~------------sh~~~~~~~~~d~i~~l~~g~i~  220 (242)
T PRK11124        175 EITAQIVSIIRELAETGITQVIV------------THEVEVARKTASRVVYMENGHIV  220 (242)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEE------------eCCHHHHHHhcCEEEEEECCEEE
Confidence            9998883     22347766552            23333334556777777666543

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.1e-27  Score=233.84  Aligned_cols=120  Identities=29%  Similarity=0.466  Sum_probs=100.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---------------------------
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---------------------------   54 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---------------------------   54 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.++|.+..                           
T Consensus        22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (305)
T PRK13651         22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK   99 (305)
T ss_pred             ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecccccccccccccccccccccccccccch
Confidence            79999999999999999999999999999999999874  6799999876431                           


Q ss_pred             -hhccccEEEEecCC-ccCCCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHH
Q 048308           55 -RTVKRKTGFVAHSN-VFYLHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQE   98 (413)
Q Consensus        55 -~~~~~~~~~v~q~~-~~~~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~   98 (413)
                       ...++.++||+|++ ..+...||+|++.|....                   +++               +||++||++
T Consensus       100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a  179 (305)
T PRK13651        100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI  179 (305)
T ss_pred             HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence             12456799999984 334457999999875321                   121               189999999


Q ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           99 LLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        99 l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |+.+|++++|||||+|||+.++..+
T Consensus       180 L~~~P~lLlLDEPt~~LD~~~~~~l  204 (305)
T PRK13651        180 LAMEPDFLVFDEPTAGLDPQGVKEI  204 (305)
T ss_pred             HHhCCCEEEEeCCCCCCCHHHHHHH
Confidence            9999999999999999999999877

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=228.47  Aligned_cols=157  Identities=19%  Similarity=0.293  Sum_probs=121.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|..++.   +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  106 (258)
T PRK14268         27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP  106 (258)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence            789999999999999999999999999999999998631   368999999987531      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc-------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           73 HLTVTETLVFIALF-------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        73 ~lTv~e~l~f~~~~-------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                       +|++||+.+....                   ++    .              +||++||++|+.+|++++|||||+||
T Consensus       107 -~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L  185 (258)
T PRK14268        107 -MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL  185 (258)
T ss_pred             -ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence             8999999875311                   11    0              18999999999999999999999999


Q ss_pred             CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |..++..+.    -+.+|.++..-+            |+.+...+.||+++.+.+|+...
T Consensus       186 D~~~~~~l~~~l~~l~~~~tiiivs------------H~~~~~~~~~d~i~~l~~G~i~~  233 (258)
T PRK14268        186 DPISTARIEDLIMNLKKDYTIVIVT------------HNMQQAARISDYTGFFLMGELIE  233 (258)
T ss_pred             CHHHHHHHHHHHHHHhhCCEEEEEE------------CCHHHHHHhCCEEEEEECCEEEE
Confidence            999998883    113455554422            33333345677877777776543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.95  E-value=4.7e-28  Score=226.15  Aligned_cols=130  Identities=32%  Similarity=0.531  Sum_probs=106.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC--CCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY--LHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~   79 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+.. ..++.++|++|+..+.  ..+||+||
T Consensus        14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e~   90 (213)
T cd03235          14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRDV   90 (213)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhheEEeccccccccCCCCcHHHH
Confidence            7899999999999999999999999999999999987  46799999998654 3456799999997653  34899999


Q ss_pred             HHHHHHc-----------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           80 LVFIALF-----------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        80 l~f~~~~-----------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      +.+....                       +++              +||+.||++|+.+|++++|||||+|||+.++..
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  170 (213)
T cd03235          91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED  170 (213)
T ss_pred             HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            9764321                       000              189999999999999999999999999999988


Q ss_pred             HH-----HhcCCcEEEe
Q 048308          123 IL-----LNSEGNSLHV  134 (413)
Q Consensus       123 i~-----ll~~G~~v~~  134 (413)
                      +.     +.++|.++..
T Consensus       171 l~~~l~~~~~~~~tvi~  187 (213)
T cd03235         171 IYELLRELRREGMTILV  187 (213)
T ss_pred             HHHHHHHHHhcCCEEEE
Confidence            83     2235665544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.9e-27  Score=230.06  Aligned_cols=119  Identities=27%  Similarity=0.444  Sum_probs=100.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCC--ccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSN--VFY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~--~~~   71 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...        ..++.++|++|+.  .++
T Consensus        22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~   99 (280)
T PRK13649         22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF   99 (280)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence            7999999999999999999999999999999999987  467999999987532        2356799999986  344


Q ss_pred             CCCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           72 LHLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        72 ~~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      + .||+||+.+...                   +++.               +||+.||++|+.+|++++|||||+|||+
T Consensus       100 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~  178 (280)
T PRK13649        100 E-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP  178 (280)
T ss_pred             c-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            4 699999976421                   1121               1899999999999999999999999999


Q ss_pred             HHHHHH
Q 048308          118 TIAKQI  123 (413)
Q Consensus       118 ~~~~~i  123 (413)
                      .++..+
T Consensus       179 ~~~~~l  184 (280)
T PRK13649        179 KGRKEL  184 (280)
T ss_pred             HHHHHH
Confidence            999887

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.8e-27  Score=231.08  Aligned_cols=154  Identities=26%  Similarity=0.353  Sum_probs=119.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCc-cCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNV-FYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~-~~~~lT   75 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...     ..++.++|++|+.. .+...|
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   94 (274)
T PRK13644         17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT   94 (274)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence            7999999999999999999999999999999999987  467999999987632     33567999999864 466789


Q ss_pred             HHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           76 VTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        76 v~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      ++||+.+..... .+                                +||++||++|+.+|++++|||||+|||+.++..
T Consensus        95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~  174 (274)
T PRK13644         95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA  174 (274)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            999998753211 10                                189999999999999999999999999999988


Q ss_pred             HH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          123 IL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       123 i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +.     +..+|.++..-+            |+.... ..+|+++.+.+|+..
T Consensus       175 l~~~l~~l~~~g~til~~t------------H~~~~~-~~~d~v~~l~~G~i~  214 (274)
T PRK13644        175 VLERIKKLHEKGKTIVYIT------------HNLEEL-HDADRIIVMDRGKIV  214 (274)
T ss_pred             HHHHHHHHHhCCCEEEEEe------------cCHHHH-hhCCEEEEEECCEEE
Confidence            73     223566655532            222222 236777777666653

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.95  E-value=2.5e-27  Score=227.73  Aligned_cols=156  Identities=27%  Similarity=0.438  Sum_probs=123.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----------------hccccEEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------------TVKRKTGFV   64 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------------~~~~~~~~v   64 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|.++  +.+|+|.++|.+...                 ..++.++|+
T Consensus        20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v   97 (257)
T PRK10619         20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV   97 (257)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence            7899999999999999999999999999999999987  467999999976531                 234679999


Q ss_pred             ecCCccCCCCCHHHHHHHHHH-c-------------------CCc---------------hhHHHHHHHHhhCCCEEEEe
Q 048308           65 AHSNVFYLHLTVTETLVFIAL-F-------------------RLP---------------IKRVSRAQELLINPSLLFLD  109 (413)
Q Consensus        65 ~q~~~~~~~lTv~e~l~f~~~-~-------------------~~~---------------~krvsia~~l~~~p~llllD  109 (413)
                      +|+..+++.+||+||+.+... .                   +++               +||+.||++|+.+|++++||
T Consensus        98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  177 (257)
T PRK10619         98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD  177 (257)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999999999999976321 0                   110               18999999999999999999


Q ss_pred             CCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          110 EPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       110 EPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |||+|||+.++..+.     +..+|.++..-+            |+.....+.+|+++.+.+|+...
T Consensus       178 EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs------------H~~~~~~~~~d~i~~l~~G~i~~  232 (257)
T PRK10619        178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVT------------HEMGFARHVSSHVIFLHQGKIEE  232 (257)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence            999999999999884     223577665532            33333345677777777776543

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.95  E-value=2.8e-27  Score=219.59  Aligned_cols=131  Identities=29%  Similarity=0.445  Sum_probs=109.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h-----hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R-----TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..   +     ..++.++|++|+..+++.
T Consensus        13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   90 (206)
T TIGR03608        13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN   90 (206)
T ss_pred             EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence            7899999999999999999999999999999999987  46799999998742   1     235679999999999999


Q ss_pred             CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +|++||+.+.....                   +.              +||+.||++|+.+|++++|||||+|||+.++
T Consensus        91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~  170 (206)
T TIGR03608        91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR  170 (206)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence            99999998753211                   10              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEe
Q 048308          121 KQIL-----LNSEGNSLHV  134 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~  134 (413)
                      ..+.     +..+|.++-.
T Consensus       171 ~~l~~~l~~~~~~~~tii~  189 (206)
T TIGR03608       171 DEVLDLLLELNDEGKTIII  189 (206)
T ss_pred             HHHHHHHHHHHhcCCEEEE
Confidence            9883     2234665544

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.95  E-value=2.3e-27  Score=236.03  Aligned_cols=120  Identities=26%  Similarity=0.405  Sum_probs=103.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      +++|||+++++||+++|+|+||||||||+++|+|++++  .+|+|.++|.++.+       ..++.++||+|+.  .++|
T Consensus        36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  113 (331)
T PRK15079         36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP  113 (331)
T ss_pred             EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence            68999999999999999999999999999999999874  67999999987632       2356799999997  5788


Q ss_pred             CCCHHHHHHHHHHc---------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIALF---------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~~---------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      .+||+|++.+....                     +++               +||+.||++|+.+|+++++||||+|||
T Consensus       114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD  193 (331)
T PRK15079        114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD  193 (331)
T ss_pred             CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            99999998764321                     110               189999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          117 STIAKQI  123 (413)
Q Consensus       117 ~~~~~~i  123 (413)
                      ..++.++
T Consensus       194 ~~~~~~i  200 (331)
T PRK15079        194 VSIQAQV  200 (331)
T ss_pred             HHHHHHH
Confidence            9999888

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.3e-27  Score=231.36  Aligned_cols=120  Identities=36%  Similarity=0.541  Sum_probs=101.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCc-cCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNV-FYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~-~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..      ...++.++|++|+.. .+...
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~   98 (283)
T PRK13636         21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA   98 (283)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence            7899999999999999999999999999999999987  46799999998762      134567999999863 34467


Q ss_pred             CHHHHHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+|++.+.... +.+                                +||+.||++|+.+|++++|||||+|||+.++.
T Consensus        99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~  178 (283)
T PRK13636         99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS  178 (283)
T ss_pred             cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence            999999874321 111                                18999999999999999999999999999998


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      .+
T Consensus       179 ~l  180 (283)
T PRK13636        179 EI  180 (283)
T ss_pred             HH
Confidence            76

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.95  E-value=1.1e-27  Score=225.80  Aligned_cols=131  Identities=35%  Similarity=0.543  Sum_probs=108.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh-------c-cccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-------V-KRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~-~~~~~~v~q~~~~~~~   73 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+....       . ++.++|++|+..+++.
T Consensus        25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~  102 (228)
T PRK10584         25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT  102 (228)
T ss_pred             EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence            7999999999999999999999999999999999987  4679999999876321       1 2469999999989999


Q ss_pred             CCHHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +|++||+.+....+                   +.              +||+.||++|+.+|++++|||||+|||..++
T Consensus       103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~  182 (228)
T PRK10584        103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG  182 (228)
T ss_pred             cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            99999997643211                   10              1899999999999999999999999999999


Q ss_pred             HHHH--H---hcC-CcEEEe
Q 048308          121 KQIL--L---NSE-GNSLHV  134 (413)
Q Consensus       121 ~~i~--l---l~~-G~~v~~  134 (413)
                      ..+.  +   .++ |.++..
T Consensus       183 ~~l~~~l~~~~~~~~~tii~  202 (228)
T PRK10584        183 DKIADLLFSLNREHGTTLIL  202 (228)
T ss_pred             HHHHHHHHHHHHhcCCEEEE
Confidence            9883  2   233 666555

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.95  E-value=2.9e-27  Score=221.86  Aligned_cols=131  Identities=37%  Similarity=0.546  Sum_probs=108.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h---cc-ccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T---VK-RKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~---~~-~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...    .   .+ +.++|++|+..+++.
T Consensus        20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   97 (221)
T TIGR02211        20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD   97 (221)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence            7899999999999999999999999999999999987  467999999987532    1   12 569999999988999


Q ss_pred             CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+|++.+....                   +++              +||++||++|+.+|++++|||||+|||..++
T Consensus        98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  177 (221)
T TIGR02211        98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA  177 (221)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence            9999999874321                   110              1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEe
Q 048308          121 KQIL-----LNS-EGNSLHV  134 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~  134 (413)
                      ..+.     +.. .|.++..
T Consensus       178 ~~l~~~l~~~~~~~~~tii~  197 (221)
T TIGR02211       178 KIIFDLMLELNRELNTSFLV  197 (221)
T ss_pred             HHHHHHHHHHHHhcCCEEEE
Confidence            8883     222 3666555

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.95  E-value=9.2e-28  Score=218.31  Aligned_cols=119  Identities=29%  Similarity=0.432  Sum_probs=101.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...   ..++.++|++|+..+++ .|++|
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~   93 (178)
T cd03247          17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRN   93 (178)
T ss_pred             ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHH
Confidence            7899999999999999999999999999999999987  467999999986532   34567999999988775 69999


Q ss_pred             HHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           79 TLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        79 ~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      |+ ....-...+||+.||++|+.+|++++|||||+|||..++..+.
T Consensus        94 ~i-~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~  138 (178)
T cd03247          94 NL-GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL  138 (178)
T ss_pred             hh-cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence            98 1111122349999999999999999999999999999998873

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.2e-27  Score=239.37  Aligned_cols=120  Identities=25%  Similarity=0.385  Sum_probs=103.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc----cC---h----h-ccccEEEEecCCc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP----LS---R----T-VKRKTGFVAHSNV   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~---~----~-~~~~~~~v~q~~~   69 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|+++  +.+|+|.++|++    ..   .    . .++.++||+|+..
T Consensus        39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence            6899999999999999999999999999999999987  467999999952    21   1    1 1257999999999


Q ss_pred             cCCCCCHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           70 FYLHLTVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        70 ~~~~lTv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      +++.+||+||+.+....+ .+                                +||+.||++|+.+|++++|||||+|||
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD  196 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD  196 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence            999999999998864321 11                                189999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          117 STIAKQI  123 (413)
Q Consensus       117 ~~~~~~i  123 (413)
                      +.++.++
T Consensus       197 ~~~r~~l  203 (382)
T TIGR03415       197 PLIRTQL  203 (382)
T ss_pred             HHHHHHH
Confidence            9999887

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.8e-27  Score=231.16  Aligned_cols=155  Identities=25%  Similarity=0.348  Sum_probs=117.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCc-cCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNV-FYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~-~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...        ..++.++|++|+.. .+.
T Consensus        22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~   99 (287)
T PRK13641         22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF   99 (287)
T ss_pred             ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence            7999999999999999999999999999999999987  478999999986531        23457999999862 233


Q ss_pred             CCCHHHHHHHHHH-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           73 HLTVTETLVFIAL-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        73 ~lTv~e~l~f~~~-------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      .+||+|++.+...                   +++.               +||++||++|+.+|++++|||||+|||+.
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~  179 (287)
T PRK13641        100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE  179 (287)
T ss_pred             cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence            5899999986432                   1121               18999999999999999999999999999


Q ss_pred             HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ++..+.     +.++|.++..-+            |+.+.....||+++.+.+|.+.
T Consensus       180 ~~~~l~~~l~~l~~~g~tvlivs------------H~~~~~~~~~d~v~~l~~G~i~  224 (287)
T PRK13641        180 GRKEMMQLFKDYQKAGHTVILVT------------HNMDDVAEYADDVLVLEHGKLI  224 (287)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence            998873     223465554422            2322233456666666666543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.95  E-value=3.1e-27  Score=223.56  Aligned_cols=152  Identities=26%  Similarity=0.364  Sum_probs=118.1

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+..... ...+|++|+..+++.+||+|++.+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~-~~~~~v~q~~~l~~~~tv~e~l~~   77 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG-PDRMVVFQNYSLLPWLTVRENIAL   77 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC-hhheEEecCcccCCCCCHHHHHHH
Confidence            689999999999999999999999999999999987  46899999998764321 235899999999999999999987


Q ss_pred             HHH--c-CC------------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308           83 IAL--F-RL------------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---  124 (413)
Q Consensus        83 ~~~--~-~~------------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---  124 (413)
                      ...  . ..                  +              +||+.||++|+.+|++++|||||+|||+.++..+.   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  157 (230)
T TIGR01184        78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL  157 (230)
T ss_pred             HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            521  0 01                  0              18999999999999999999999999999999883   


Q ss_pred             --Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          125 --LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       125 --ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                        +.. .|.++..-+            |+.......+|+++.+.+|+.
T Consensus       158 ~~~~~~~~~tii~~s------------H~~~~~~~~~d~v~~l~~G~i  193 (230)
T TIGR01184       158 MQIWEEHRVTVLMVT------------HDVDEALLLSDRVVMLTNGPA  193 (230)
T ss_pred             HHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEeCCcE
Confidence              222 366655533            232223345666666666654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=3.4e-27  Score=229.19  Aligned_cols=120  Identities=38%  Similarity=0.538  Sum_probs=101.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh------hccccEEEEecCCc-cCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR------TVKRKTGFVAHSNV-FYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~-~~~~l   74 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...      ..++.++|++|+.. .+...
T Consensus        17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   94 (275)
T PRK13639         17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP   94 (275)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence            7899999999999999999999999999999999987  467999999987631      23567999999863 33457


Q ss_pred             CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+|++.+....                   ++.              .||+.||++|+.+|++++|||||+|||+.++.
T Consensus        95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~  174 (275)
T PRK13639         95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS  174 (275)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence            999999874311                   110              18999999999999999999999999999998


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      ++
T Consensus       175 ~l  176 (275)
T PRK13639        175 QI  176 (275)
T ss_pred             HH
Confidence            87

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.4e-27  Score=227.84  Aligned_cols=120  Identities=28%  Similarity=0.422  Sum_probs=100.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCc-cCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNV-FYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~-~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..      ...++.++|++|+.. .+...
T Consensus        16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~   93 (271)
T PRK13638         16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT   93 (271)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence            7899999999999999999999999999999999987  46799999998753      123457999999865 24456


Q ss_pred             CHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |+.|++.+....                   ++.              +||++||++|+.+|++++|||||+|||+.++.
T Consensus        94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~  173 (271)
T PRK13638         94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT  173 (271)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            899998764221                   110              18999999999999999999999999999998


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      .+
T Consensus       174 ~l  175 (271)
T PRK13638        174 QM  175 (271)
T ss_pred             HH
Confidence            87

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.95  E-value=1.2e-27  Score=223.04  Aligned_cols=152  Identities=26%  Similarity=0.376  Sum_probs=118.4

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHHHH
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      .|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...  ..++.++|++|+..+++.+|++||+.
T Consensus        15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~   92 (211)
T cd03298          15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG   92 (211)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence            38999999999999999999999999999999987  467999999987642  23467999999999999999999997


Q ss_pred             HHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           82 FIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        82 f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +....+                   +.              +||++||++|+.+|++++|||||+|||..++..+.    
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  172 (211)
T cd03298          93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL  172 (211)
T ss_pred             cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            643211                   00              18999999999999999999999999999999883    


Q ss_pred             -Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          125 -LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       125 -ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                       +.. .|.++..-+            |+.......+|+++.+.+|+.
T Consensus       173 ~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~G~i  207 (211)
T cd03298         173 DLHAETKMTVLMVT------------HQPEDAKRLAQRVVFLDNGRI  207 (211)
T ss_pred             HHHHhcCCEEEEEe------------cCHHHHHhhhCEEEEEECCEE
Confidence             222 376655532            333233345666666665543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.7e-27  Score=237.51  Aligned_cols=117  Identities=28%  Similarity=0.441  Sum_probs=102.0

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCCCCH
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      |+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...        ..++.++|++|+..+++++||
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   93 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV   93 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence            8999999999999999999999999999999987  467999999987531        235679999999999999999


Q ss_pred             HHHHHHHHH-------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIAL-------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~-------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.|...             +++.              +||++||++|+.+|++++|||||+|||+.++..+
T Consensus        94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l  167 (352)
T PRK11144         94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL  167 (352)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence            999987521             1111              2899999999999999999999999999999877

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.4e-27  Score=228.98  Aligned_cols=156  Identities=23%  Similarity=0.325  Sum_probs=123.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...    . .+..++|++|+..+++.+||
T Consensus        20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (255)
T PRK11300         20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV   97 (255)
T ss_pred             EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence            7899999999999999999999999999999999987  467999999987642    1 23458999999999999999


Q ss_pred             HHHHHHHHH----------------------------------cCCc--------------hhHHHHHHHHhhCCCEEEE
Q 048308           77 TETLVFIAL----------------------------------FRLP--------------IKRVSRAQELLINPSLLFL  108 (413)
Q Consensus        77 ~e~l~f~~~----------------------------------~~~~--------------~krvsia~~l~~~p~llll  108 (413)
                      +||+.+...                                  +++.              +||+.||++|+.+|++++|
T Consensus        98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  177 (255)
T PRK11300         98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML  177 (255)
T ss_pred             HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999986421                                  0110              1899999999999999999


Q ss_pred             eCCCCCCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          109 DEPASGLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       109 DEPtsgLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||||+|||..++..+.     +..+ |.++..-+            |+.+...+.+|+++.+.+|+...
T Consensus       178 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s------------H~~~~~~~~~d~i~~l~~g~i~~  234 (255)
T PRK11300        178 DEPAAGLNPKETKELDELIAELRNEHNVTVLLIE------------HDMKLVMGISDRIYVVNQGTPLA  234 (255)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCeEEe
Confidence            9999999999998883     2233 66655532            33333345678888887776543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.95  E-value=7.4e-28  Score=258.55  Aligned_cols=160  Identities=26%  Similarity=0.410  Sum_probs=129.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.+||+|+||||||||+|+|+|+++  +.+|+|.+||.+.++    ..|++++||+||+.+| +-|++
T Consensus       488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~  564 (709)
T COG2274         488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIR  564 (709)
T ss_pred             hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHH
Confidence            7999999999999999999999999999999999998  478999999998753    5788999999999887 45999


Q ss_pred             HHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+..-                    .++|                  +||+.|||+|+.+|++|+||||||+||+.+
T Consensus       565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s  644 (709)
T COG2274         565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET  644 (709)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence            99986421                    0122                  289999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ  177 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~  177 (413)
                      ...|+    -+.+|+++..=            -|..+ ...-||.++.+.+|++...+++++
T Consensus       645 E~~I~~~L~~~~~~~T~I~I------------aHRl~-ti~~adrIiVl~~Gkiv~~gs~~e  693 (709)
T COG2274         645 EAIILQNLLQILQGRTVIII------------AHRLS-TIRSADRIIVLDQGKIVEQGSHEE  693 (709)
T ss_pred             HHHHHHHHHHHhcCCeEEEE------------Eccch-HhhhccEEEEccCCceeccCCHHH
Confidence            99884    23356665542            23322 235578888888888777666544

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4e-27  Score=226.41  Aligned_cols=152  Identities=21%  Similarity=0.253  Sum_probs=118.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++.   +.+|+|.++|.+..      ...++.++|++|+..+++
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (258)
T PRK14241         19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP   98 (258)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCC
Confidence            789999999999999999999999999999999998642   25899999998752      134567999999999999


Q ss_pred             CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      .+||+||+.+...                    +++.                  +||++||++|+.+|++++|||||+|
T Consensus        99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  178 (258)
T PRK14241         99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA  178 (258)
T ss_pred             CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence            9999999976421                    1110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA  165 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~  165 (413)
                      ||..++..+.    -+.++.++..-+            |+.....+.+|+++.+.
T Consensus       179 LD~~~~~~l~~~l~~~~~~~tviivs------------H~~~~~~~~~d~i~~l~  221 (258)
T PRK14241        179 LDPISTLAIEDLINELKQDYTIVIVT------------HNMQQAARVSDQTAFFN  221 (258)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEe------------cCHHHHHHhCCEEEEEe
Confidence            9999998883    113455544422            23333345567766664

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.3e-27  Score=224.55  Aligned_cols=158  Identities=23%  Similarity=0.298  Sum_probs=123.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE---TRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|.+++.+   .+|+|.++|.+...      ..++.++|++|++.+++
T Consensus        19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (252)
T PRK14272         19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFP   98 (252)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCc
Confidence            7899999999999999999999999999999999986432   47999999987532      23557999999999999


Q ss_pred             CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      .+|+.||+.+....                    ++    +              +||++||++|+.+|++++|||||+|
T Consensus        99 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  178 (252)
T PRK14272         99 TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA  178 (252)
T ss_pred             CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            99999999754210                    00    0              1899999999999999999999999


Q ss_pred             CCHHHHHHHH-H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL-L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~-l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+. +   +.+|.++..-            .|+.....+.+|+++.+.+|+...
T Consensus       179 LD~~~~~~l~~~l~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14272        179 LDPASTARIEDLMTDLKKVTTIIIV------------THNMHQAARVSDTTSFFLVGDLVE  227 (252)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998883 1   1344544442            234334445678888887776543

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.95  E-value=3.7e-27  Score=227.64  Aligned_cols=157  Identities=23%  Similarity=0.340  Sum_probs=122.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...       ..++.++|++|+.  .+++
T Consensus        26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~  103 (265)
T TIGR02769        26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP  103 (265)
T ss_pred             EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence            7899999999999999999999999999999999987  467999999987532       1345799999986  4677


Q ss_pred             CCCHHHHHHHHHH--------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           73 HLTVTETLVFIAL--------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      .+||+|++.+...                    +++.               +||++||++|+.+|++++|||||+|||+
T Consensus       104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~  183 (265)
T TIGR02769       104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM  183 (265)
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            8999999865321                    1111               1899999999999999999999999999


Q ss_pred             HHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          118 TIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       118 ~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      .++..+.     +..+ |.++..-+            |+.....+.+|+++.+.+|.....
T Consensus       184 ~~~~~l~~~l~~~~~~~g~tiiivs------------H~~~~~~~~~d~i~~l~~G~i~~~  232 (265)
T TIGR02769       184 VLQAVILELLRKLQQAFGTAYLFIT------------HDLRLVQSFCQRVAVMDKGQIVEE  232 (265)
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEe------------CCHHHHHHHhcEEEEEeCCEEEEE
Confidence            9998873     2333 76665533            343334456788888877765443

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.4e-27  Score=225.30  Aligned_cols=157  Identities=22%  Similarity=0.295  Sum_probs=120.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--T-GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  + .+.+|+|.++|++...      ..++.++|++|+..+++
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  100 (253)
T PRK14242         21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP  100 (253)
T ss_pred             eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence            7899999999999999999999999999999999863  1 1368999999987532      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~------------------~~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .||+||+.+....                    ++                  .+||+.||++|+.+|++++|||||+|
T Consensus       101 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~  179 (253)
T PRK14242        101 -KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA  179 (253)
T ss_pred             -CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence             5999999874211                    11                  01899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.    -+.+|.++..-+            |+.....+.+|+++.+.+|.+..
T Consensus       180 LD~~~~~~l~~~l~~~~~~~tvii~t------------H~~~~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14242        180 LDPIATQKIEELIHELKARYTIIIVT------------HNMQQAARVSDVTAFFYMGKLIE  228 (253)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEEE------------ecHHHHHHhCCEEEEEECCEEEE
Confidence            9999998883    113455554422            33333345567777777776543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.95  E-value=1.1e-27  Score=216.54  Aligned_cols=126  Identities=31%  Similarity=0.463  Sum_probs=105.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|.+++  .+|+|.++|.+...    ..++.++|++|+..+++ .|+.
T Consensus        17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~   93 (171)
T cd03228          17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR   93 (171)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence            78999999999999999999999999999999999874  67999999987532    34567999999987776 6999


Q ss_pred             HHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--H--hcCCcEEEe
Q 048308           78 ETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--L--NSEGNSLHV  134 (413)
Q Consensus        78 e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--l--l~~G~~v~~  134 (413)
                      ||+ ++   ...+||+.||++|+.+|++++|||||+|||+.++.++.  +  +.+|.++..
T Consensus        94 e~l-LS---~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~  150 (171)
T cd03228          94 ENI-LS---GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIV  150 (171)
T ss_pred             HHh-hC---HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            998 11   12359999999999999999999999999999998873  1  234555544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.1e-27  Score=225.21  Aligned_cols=157  Identities=22%  Similarity=0.272  Sum_probs=119.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL---STGETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..   ++.+.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   97 (250)
T PRK14245         18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP   97 (250)
T ss_pred             EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence            689999999999999999999999999999999973   221258999999987632      23557999999988876


Q ss_pred             CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .|++||+.+...                    ++++                  +||++||++|+.+|++++|||||+|
T Consensus        98 -~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~  176 (250)
T PRK14245         98 -KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA  176 (250)
T ss_pred             -ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence             699999976421                    1110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+.    -+.+|.++..-            .|+.....+.+|+++.+.+|....
T Consensus       177 LD~~~~~~l~~~l~~~~~~~tiiiv------------tH~~~~~~~~~d~v~~l~~G~~~~  225 (250)
T PRK14245        177 LDPISTAKVEELIHELKKDYTIVIV------------THNMQQAARVSDKTAFFYMGEMVE  225 (250)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHhhCCEEEEEECCEEEE
Confidence            9999999883    11345554442            233333345577777777776543

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.2e-27  Score=224.78  Aligned_cols=158  Identities=20%  Similarity=0.286  Sum_probs=121.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|+++  +. +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (252)
T PRK14256         19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFP   98 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCC
Confidence            7899999999999999999999999999999999975  21 257999999987531      34567999999999999


Q ss_pred             CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      .+|++||+.+...                    +++.                  +||++||++|+.+|++++|||||+|
T Consensus        99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~g  178 (252)
T PRK14256         99 AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASA  178 (252)
T ss_pred             cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            9999999975321                    1110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.    -+.++.++..-            .|+.+.....+|+++.+.+|.+..
T Consensus       179 LD~~~~~~l~~~l~~~~~~~tiiiv------------sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14256        179 LDPISTLKIEELIEELKEKYTIIIV------------THNMQQAARVSDYTAFFYMGDLVE  227 (252)
T ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEE------------ECCHHHHHhhCCEEEEEECCEEEE
Confidence            9999998883    12234444432            233333345577777777776543

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.94  E-value=1.8e-27  Score=228.98  Aligned_cols=155  Identities=30%  Similarity=0.429  Sum_probs=123.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...    ..++.++|++|+..+++.+||+
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   94 (258)
T PRK13548         17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE   94 (258)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence            7999999999999999999999999999999999987  467999999986532    2345799999998888889999


Q ss_pred             HHHHHHHHc-------------------CCc--------------hhHHHHHHHHh------hCCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIALF-------------------RLP--------------IKRVSRAQELL------INPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~~~-------------------~~~--------------~krvsia~~l~------~~p~llllDEPtsgLD~~  118 (413)
                      |++.+....                   ++.              +||++||++|+      .+|++++|||||+|||+.
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~  174 (258)
T PRK13548         95 EVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA  174 (258)
T ss_pred             HHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence            999874321                   110              18999999999      599999999999999999


Q ss_pred             HHHHHH-----Hh-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          119 IAKQIL-----LN-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       119 ~~~~i~-----ll-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ++..+.     +. ++|.++..-            .|+.....+.+|+++.+.+|...
T Consensus       175 ~~~~l~~~l~~~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~  220 (258)
T PRK13548        175 HQHHVLRLARQLAHERGLAVIVV------------LHDLNLAARYADRIVLLHQGRLV  220 (258)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEE------------ECCHHHHHHhcCEEEEEECCEEE
Confidence            998873     23 356665552            24444445668888888777654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.94  E-value=4.5e-27  Score=236.14  Aligned_cols=117  Identities=31%  Similarity=0.406  Sum_probs=102.1

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCCCCH
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      |+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...        ..++.++|++|+..+++++||
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   92 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV   92 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence            8999999999999999999999999999999987  467999999987531        235679999999999999999


Q ss_pred             HHHHHHHHHc-----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.|....                 ++.              +||++||++|+.+|++++|||||+|||..++..+
T Consensus        93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l  170 (354)
T TIGR02142        93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI  170 (354)
T ss_pred             HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence            9999875321                 111              1899999999999999999999999999999877

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.94  E-value=4.7e-27  Score=223.23  Aligned_cols=156  Identities=32%  Similarity=0.503  Sum_probs=124.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...  ..++.++|++|+..+++.+|++||
T Consensus        15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en   92 (237)
T TIGR00968        15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN   92 (237)
T ss_pred             eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence            7899999999999999999999999999999999987  467999999987643  335679999999999999999999


Q ss_pred             HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308           80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--  124 (413)
Q Consensus        80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--  124 (413)
                      +.+....+                   +.              .||+.||++|+.+|++++|||||+|||..++..+.  
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~  172 (237)
T TIGR00968        93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW  172 (237)
T ss_pred             HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            98754221                   10              18999999999999999999999999999998883  


Q ss_pred             ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                         +..+ |+++..-+            |+.......+|+++.+.+|....
T Consensus       173 l~~~~~~~~~tvli~s------------H~~~~~~~~~d~i~~l~~g~i~~  211 (237)
T TIGR00968       173 LRKLHDEVHVTTVFVT------------HDQEEAMEVADRIVVMSNGKIEQ  211 (237)
T ss_pred             HHHHHHhcCCEEEEEe------------CCHHHHHhhcCEEEEEECCEEEE
Confidence               1223 66665533            23333345577777777776543

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4e-27  Score=229.47  Aligned_cols=122  Identities=26%  Similarity=0.368  Sum_probs=103.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCC-eeEEEEECCcccCh----hccccEEEEecCCc-cCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE-TRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lT   75 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|.+++.. ..|+|.++|.+...    ..++.++|++|+.. .++..|
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t  101 (282)
T PRK13640         22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT  101 (282)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence            7899999999999999999999999999999999987422 24999999987642    23567999999973 667899


Q ss_pred             HHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           76 VTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        76 v~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      |+|++.|....                   ++.              +||+.||++|+.+|++++|||||+|||..++..
T Consensus       102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~  181 (282)
T PRK13640        102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ  181 (282)
T ss_pred             HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            99999875321                   110              189999999999999999999999999999988


Q ss_pred             H
Q 048308          123 I  123 (413)
Q Consensus       123 i  123 (413)
                      +
T Consensus       182 l  182 (282)
T PRK13640        182 I  182 (282)
T ss_pred             H
Confidence            7

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=6.9e-27  Score=227.26  Aligned_cols=120  Identities=30%  Similarity=0.491  Sum_probs=101.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+.. .+...||
T Consensus        19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   96 (277)
T PRK13652         19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV   96 (277)
T ss_pred             eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence            7999999999999999999999999999999999987  478999999987532    34567999999963 3446799


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .|++.+....                   ++.              +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l  176 (277)
T PRK13652         97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL  176 (277)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            9999864321                   110              1899999999999999999999999999999887

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.9e-27  Score=228.65  Aligned_cols=120  Identities=26%  Similarity=0.393  Sum_probs=102.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCc-cCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNV-FYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~-~~~~lT   75 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|.++  +.+|+|.++|.+...     ..++.++|++|++. .+...|
T Consensus        25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~  102 (280)
T PRK13633         25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI  102 (280)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence            8999999999999999999999999999999999987  467999999987642     23567999999863 233569


Q ss_pred             HHHHHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           76 VTETLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        76 v~e~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      |.|++.|.... +.+                                +||++||++|+.+|++++|||||+|||+.++..
T Consensus       103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~  182 (280)
T PRK13633        103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE  182 (280)
T ss_pred             HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            99999875321 111                                189999999999999999999999999999988


Q ss_pred             H
Q 048308          123 I  123 (413)
Q Consensus       123 i  123 (413)
                      +
T Consensus       183 l  183 (280)
T PRK13633        183 V  183 (280)
T ss_pred             H
Confidence            8

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4e-27  Score=228.15  Aligned_cols=154  Identities=26%  Similarity=0.387  Sum_probs=120.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...    ..++.++|++|+.. .++.+||
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv  101 (271)
T PRK13632         24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV  101 (271)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence            7899999999999999999999999999999999987  467999999987642    34567999999963 6778999


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.+....                   ++.              +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus       102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l  181 (271)
T PRK13632        102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI  181 (271)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            9999874321                   111              1899999999999999999999999999999888


Q ss_pred             H-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          124 L-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       124 ~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .     +..+ |+++..-+            |+..... .+|+++.+.+|...
T Consensus       182 ~~~l~~~~~~~~~tiii~s------------H~~~~~~-~~d~v~~l~~G~i~  221 (271)
T PRK13632        182 KKIMVDLRKTRKKTLISIT------------HDMDEAI-LADKVIVFSEGKLI  221 (271)
T ss_pred             HHHHHHHHHhcCcEEEEEE------------echhHHh-hCCEEEEEECCEEE
Confidence            3     2233 36554422            3333322 47777777777654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.94  E-value=5.8e-27  Score=221.83  Aligned_cols=156  Identities=31%  Similarity=0.452  Sum_probs=123.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +++|+|++++|||+++|+||||||||||+|+|+|.+++  .+|+|.++|.+..+  ..++.++|++|+..+++.+|++||
T Consensus        15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n   92 (232)
T cd03300          15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN   92 (232)
T ss_pred             eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHH
Confidence            78999999999999999999999999999999999874  67999999987643  234679999999999989999999


Q ss_pred             HHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308           80 LVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--  124 (413)
Q Consensus        80 l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--  124 (413)
                      +.+....                   ++.              +||+.||++|+.+|++++|||||+|||+.++..+.  
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~  172 (232)
T cd03300          93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE  172 (232)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            9875321                   111              18999999999999999999999999999999883  


Q ss_pred             ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                         +..+ |.++..-+            |+.+...+.+|+++.+.+|....
T Consensus       173 l~~~~~~~~~tiii~s------------h~~~~~~~~~d~i~~l~~G~~~~  211 (232)
T cd03300         173 LKRLQKELGITFVFVT------------HDQEEALTMSDRIAVMNKGKIQQ  211 (232)
T ss_pred             HHHHHHHcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEe
Confidence               2222 66665532            22222234567777777766543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.2e-27  Score=223.33  Aligned_cols=158  Identities=28%  Similarity=0.428  Sum_probs=126.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCC-ccCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSN-VFYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~-~~~~~lT   75 (413)
                      +|+|+|+.+++||.++|+|+||||||||+++++|++++  .+|.|.++|.+..     ...++.+|||+|++ ..+..-|
T Consensus        19 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t   96 (235)
T COG1122          19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT   96 (235)
T ss_pred             eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence            78999999999999999999999999999999999984  6799999998754     24678899999996 3455779


Q ss_pred             HHHHHHHHHHc-CC--------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           76 VTETLVFIALF-RL--------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        76 v~e~l~f~~~~-~~--------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      |.|.+.|...- +.                                .+|||+||.+|+.+|++++|||||||||+..+.+
T Consensus        97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~  176 (235)
T COG1122          97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE  176 (235)
T ss_pred             HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence            99999986421 11                                1289999999999999999999999999999999


Q ss_pred             HH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          123 IL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       123 i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      ++     +..+ |+++-.            ..|+.....+.||+++.+..|+....+
T Consensus       177 l~~~l~~L~~~~~~tii~------------~tHd~~~~~~~ad~v~vl~~G~i~~~g  221 (235)
T COG1122         177 LLELLKKLKEEGGKTIII------------VTHDLELVLEYADRVVVLDDGKILADG  221 (235)
T ss_pred             HHHHHHHHHhcCCCeEEE------------EeCcHHHHHhhCCEEEEEECCEEeecC
Confidence            84     3334 455544            234555556778888888887764433

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.4e-27  Score=224.47  Aligned_cols=157  Identities=24%  Similarity=0.306  Sum_probs=119.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +. ..+|+|.++|++...      ..++.++|++|+..+++
T Consensus        20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   99 (252)
T PRK14239         20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP   99 (252)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence            7899999999999999999999999999999999853  21 247999999987531      23567999999988876


Q ss_pred             CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .||+||+.+....                    ++        .          +||++||++|+.+|++++|||||+|
T Consensus       100 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  178 (252)
T PRK14239        100 -MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA  178 (252)
T ss_pred             -CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence             8999999764210                    11        0          1899999999999999999999999


Q ss_pred             CCHHHHHHHH-Hh---cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL-LN---SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~-ll---~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+. ++   .+|.++..-            .|+.+.....+|+++.+.+|+...
T Consensus       179 LD~~~~~~l~~~l~~~~~~~tii~~------------sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14239        179 LDPISAGKIEETLLGLKDDYTMLLV------------TRSMQQASRISDRTGFFLDGDLIE  227 (252)
T ss_pred             cCHHHHHHHHHHHHHHhhCCeEEEE------------ECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998883 11   234444442            233333345577777777776543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.5e-27  Score=223.91  Aligned_cols=158  Identities=22%  Similarity=0.293  Sum_probs=123.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+.+|+|.++|++...    ..++.++|++|+..+++ .||
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv   95 (246)
T PRK14269         17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSI   95 (246)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccH
Confidence            78999999999999999999999999999999998753 2468999999987642    34567999999988886 699


Q ss_pred             HHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           77 TETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        77 ~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +||+.+....                     ++.                  +||++||++|+.+|++++|||||+|||.
T Consensus        96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~  175 (246)
T PRK14269         96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP  175 (246)
T ss_pred             HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            9999764211                     121                  1899999999999999999999999999


Q ss_pred             HHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          118 TIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       118 ~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      .++..+.  +  +.+|.++..-            .|+.+...+.+|+++.+.+|+....
T Consensus       176 ~~~~~l~~~l~~~~~~~tiii~------------tH~~~~~~~~~d~i~~l~~G~i~~~  222 (246)
T PRK14269        176 ISSGVIEELLKELSHNLSMIMV------------THNMQQGKRVADYTAFFHLGELIEF  222 (246)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEE------------ecCHHHHHhhCcEEEEEECCEEEEE
Confidence            9998883  1  1246655542            2333334466788888888876543

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.4e-27  Score=223.80  Aligned_cols=157  Identities=22%  Similarity=0.297  Sum_probs=120.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|..++.   +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14240         18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP   97 (250)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence            789999999999999999999999999999999986521   258999999987632      23557999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       +|++||+.+....                    ++        .          +||+.||++|+.+|++++|||||+|
T Consensus        98 -~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  176 (250)
T PRK14240         98 -MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA  176 (250)
T ss_pred             -ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence             8999999874311                    11        0          1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.    -+.+|.++..-+            |+.......+|+++.+.+|+...
T Consensus       177 LD~~~~~~l~~~l~~~~~~~tiii~s------------H~~~~~~~~~d~v~~l~~G~i~~  225 (250)
T PRK14240        177 LDPISTLKIEELIQELKKDYTIVIVT------------HNMQQASRISDKTAFFLNGEIVE  225 (250)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEEE------------eCHHHHHhhCCEEEEEECCEEEE
Confidence            9999998873    113455554422            33333345567777777776543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.9e-27  Score=224.04  Aligned_cols=157  Identities=23%  Similarity=0.347  Sum_probs=120.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|+.++.   +.+|+|.++|.+...      ..++.++|++|++.+++
T Consensus        18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14262         18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP   97 (250)
T ss_pred             eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence            689999999999999999999999999999999997631   268999999987531      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .|++||+.+....                    ++.                  +||++||++|+.+|++++|||||+|
T Consensus        98 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~  176 (250)
T PRK14262         98 -MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA  176 (250)
T ss_pred             -ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence             8999999864311                    110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.    -+.+|+++..-+            |+.......+|+++.+.+|....
T Consensus       177 LD~~~~~~l~~~l~~~~~~~tili~s------------H~~~~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14262        177 LDPIATQRIEKLLEELSENYTIVIVT------------HNIGQAIRIADYIAFMYRGELIE  225 (250)
T ss_pred             cCHHHHHHHHHHHHHHhcCcEEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998873    123455554422            33222335567777777776543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.94  E-value=7.4e-27  Score=218.23  Aligned_cols=155  Identities=27%  Similarity=0.377  Sum_probs=120.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...  ..++.++|++|+..+++.+|++||
T Consensus        13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en   90 (213)
T TIGR01277        13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN   90 (213)
T ss_pred             cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence            4679999999999999999999999999999999987  467999999987642  345679999999999999999999


Q ss_pred             HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308           80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--  124 (413)
Q Consensus        80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--  124 (413)
                      +.+.....                   +.              +||+.||++|+.+|++++|||||+|||..++..+.  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~  170 (213)
T TIGR01277        91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL  170 (213)
T ss_pred             HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence            97642110                   00              18999999999999999999999999999999883  


Q ss_pred             ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                         +.++ |.++..-+            |+.+.....+|+++.+.+|+..
T Consensus       171 l~~~~~~~~~tii~vs------------h~~~~~~~~~d~v~~l~~g~i~  208 (213)
T TIGR01277       171 VKQLCSERQRTLLMVT------------HHLSDARAIASQIAVVSQGKIK  208 (213)
T ss_pred             HHHHHHhcCCEEEEEe------------CCHHHHHhhcCeEEEEECCeEE
Confidence               2233 66655522            2333223456777776666543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.5e-27  Score=224.46  Aligned_cols=157  Identities=18%  Similarity=0.278  Sum_probs=120.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|..++.   +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14270         19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP   98 (251)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence            689999999999999999999999999999999987632   267999999987632      23567999999998887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       +|++||+.+....                    ++        .          +||+.||++|+.+|++++|||||+|
T Consensus        99 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  177 (251)
T PRK14270         99 -MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA  177 (251)
T ss_pred             -CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence             8999999874311                    11        0          1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.    -+.++.++..-            .|+.......+|+++.+.+|.+..
T Consensus       178 LD~~~~~~l~~~L~~~~~~~tiiiv------------sH~~~~~~~~~d~v~~l~~G~i~~  226 (251)
T PRK14270        178 LDPISTLKIEDLMVELKKEYTIVIV------------THNMQQASRVSDYTAFFLMGDLIE  226 (251)
T ss_pred             CCHHHHHHHHHHHHHHHhCCeEEEE------------EcCHHHHHHhcCEEEEEECCeEEE
Confidence            9999998883    11234444332            233333345577888887776543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.94  E-value=6.1e-27  Score=222.41  Aligned_cols=131  Identities=32%  Similarity=0.494  Sum_probs=107.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEe-cCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVA-HSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~-q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+..   ...++.++|++ |++.+++.+|++
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~  113 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI  113 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence            7999999999999999999999999999999999987  46799999998643   23456799997 556778899999


Q ss_pred             HHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           78 ETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        78 e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      |++.+.....                   ++              +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus       114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  193 (236)
T cd03267         114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR  193 (236)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence            9997754321                   10              18999999999999999999999999999999883


Q ss_pred             -----Hhc-CCcEEEe
Q 048308          125 -----LNS-EGNSLHV  134 (413)
Q Consensus       125 -----ll~-~G~~v~~  134 (413)
                           +.. .|.++..
T Consensus       194 ~~l~~~~~~~~~tiii  209 (236)
T cd03267         194 NFLKEYNRERGTTVLL  209 (236)
T ss_pred             HHHHHHHhcCCCEEEE
Confidence                 222 2666555

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=5.3e-27  Score=219.56  Aligned_cols=131  Identities=27%  Similarity=0.337  Sum_probs=110.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +++|+|+++++||+++|+|+||||||||+|+|+|.++  +.+|+|.++|.+... ..++.++|++|++.+++.+|++|++
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l  103 (214)
T PRK13543         26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL  103 (214)
T ss_pred             eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHH
Confidence            7899999999999999999999999999999999987  467999999987653 2345689999999889999999999


Q ss_pred             HHHHHc----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----H
Q 048308           81 VFIALF----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----L  125 (413)
Q Consensus        81 ~f~~~~----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----l  125 (413)
                      .+....                +++              +||++||++++.+|++++|||||+|||..++..+.     +
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  183 (214)
T PRK13543        104 HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH  183 (214)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            765321                111              18999999999999999999999999999998882     2


Q ss_pred             hcCCcEEEe
Q 048308          126 NSEGNSLHV  134 (413)
Q Consensus       126 l~~G~~v~~  134 (413)
                      .++|.++..
T Consensus       184 ~~~~~tiii  192 (214)
T PRK13543        184 LRGGGAALV  192 (214)
T ss_pred             HhCCCEEEE
Confidence            345666655

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.3e-27  Score=229.35  Aligned_cols=155  Identities=26%  Similarity=0.390  Sum_probs=123.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+..+++.+|+.
T Consensus        17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   94 (255)
T PRK11231         17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR   94 (255)
T ss_pred             EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence            7899999999999999999999999999999999987  467999999986532    2345699999999888889999


Q ss_pred             HHHHHHHH-----c------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL-----F------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~-----~------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |++.+...     .                  +++              +||++||++|+.+|++++|||||+|||+.++
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~  174 (255)
T PRK11231         95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ  174 (255)
T ss_pred             HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            99987410     0                  110              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ..+.     +..+|.++-.-+            |+.+...+.+|+++.+.+|.+.
T Consensus       175 ~~l~~~l~~l~~~~~tiii~t------------H~~~~~~~~~d~i~~l~~G~i~  217 (255)
T PRK11231        175 VELMRLMRELNTQGKTVVTVL------------HDLNQASRYCDHLVVLANGHVM  217 (255)
T ss_pred             HHHHHHHHHHHHCCCEEEEEE------------CCHHHHHHhcCEEEEEECCeEE
Confidence            8883     223566655522            3444445667888888777654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.94  E-value=7.5e-27  Score=221.59  Aligned_cols=157  Identities=27%  Similarity=0.427  Sum_probs=124.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|++++|||+++|+||||||||||+++|+|+++  +.+|+|.++|.+...  ..++.++|++|+..+++.+|++|+
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~   91 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN   91 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence            6899999999999999999999999999999999987  467999999987643  235679999999999999999999


Q ss_pred             HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--
Q 048308           80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--  124 (413)
Q Consensus        80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--  124 (413)
                      +.+.....                   ++              +||+.||++|+.+|++++|||||+|||..++..+.  
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~  171 (235)
T cd03299          92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE  171 (235)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHH
Confidence            98753211                   10              18999999999999999999999999999999883  


Q ss_pred             ---HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          125 ---LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       125 ---ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                         +..+ |.++-.-+            |+.+.....+|+++.+..|.....
T Consensus       172 l~~~~~~~~~tili~t------------H~~~~~~~~~d~i~~l~~G~i~~~  211 (235)
T cd03299         172 LKKIRKEFGVTVLHVT------------HDFEEAWALADKVAIMLNGKLIQV  211 (235)
T ss_pred             HHHHHHhcCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEEEe
Confidence               1222 76655533            333333455677777777765433

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6e-27  Score=223.86  Aligned_cols=157  Identities=21%  Similarity=0.266  Sum_probs=120.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC-----hhccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++.   +.+|+|.++|.+..     ...++.++|++|+..+++ 
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-   96 (249)
T PRK14253         18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-   96 (249)
T ss_pred             eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-
Confidence            789999999999999999999999999999999998642   35899999998753     134567999999988887 


Q ss_pred             CCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           74 LTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        74 lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      .||+||+.+....                    ++.                  +||+.||++|+.+|++++|||||+||
T Consensus        97 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L  176 (249)
T PRK14253         97 MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSAL  176 (249)
T ss_pred             ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence            8999999864211                    110                  18999999999999999999999999


Q ss_pred             CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |..++..+.    -+.++.++..-+            |+.....+.+|+++.+.+|++..
T Consensus       177 D~~~~~~l~~~l~~~~~~~tii~~s------------h~~~~~~~~~d~i~~l~~G~i~~  224 (249)
T PRK14253        177 DPIATHKIEELMEELKKNYTIVIVT------------HSMQQARRISDRTAFFLMGELVE  224 (249)
T ss_pred             CHHHHHHHHHHHHHHhcCCeEEEEe------------cCHHHHHHhCCEEEEEECCEEEE
Confidence            999998873    122344444322            23333345567777777776543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.94  E-value=1.3e-26  Score=214.27  Aligned_cols=131  Identities=28%  Similarity=0.422  Sum_probs=109.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...   ..++.++|++|++.+++.+|++|
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   92 (198)
T TIGR01189        15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE   92 (198)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence            6899999999999999999999999999999999987  467999999986532   34467999999988888899999


Q ss_pred             HHHHHHHcC---------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----
Q 048308           79 TLVFIALFR---------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----  124 (413)
Q Consensus        79 ~l~f~~~~~---------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----  124 (413)
                      ++.+.....               +.              +||+.||++++.+|++++|||||+|||..++..+.     
T Consensus        93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  172 (198)
T TIGR01189        93 NLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA  172 (198)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            997653221               10              18999999999999999999999999999998883     


Q ss_pred             HhcCCcEEEe
Q 048308          125 LNSEGNSLHV  134 (413)
Q Consensus       125 ll~~G~~v~~  134 (413)
                      +..+|.++..
T Consensus       173 ~~~~~~tii~  182 (198)
T TIGR01189       173 HLARGGIVLL  182 (198)
T ss_pred             HHhCCCEEEE
Confidence            2245665544

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.94  E-value=6.5e-27  Score=222.53  Aligned_cols=133  Identities=30%  Similarity=0.332  Sum_probs=107.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+..+.+|+|.++|.+...    . .+..++|++|++.+++.+|+
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~   94 (243)
T TIGR01978        15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSN   94 (243)
T ss_pred             EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCH
Confidence            789999999999999999999999999999999985212478999999987532    1 23348999999999999999


Q ss_pred             HHHHHHHHHc--------------------------CCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           77 TETLVFIALF--------------------------RLP----------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        77 ~e~l~f~~~~--------------------------~~~----------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      +|++.+....                          +++                +||++||++|+.+|++++|||||+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  174 (243)
T TIGR01978        95 LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSG  174 (243)
T ss_pred             HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence            9998653210                          111                1799999999999999999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEe
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ||..++..+.     +.++|.++..
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~tvi~  199 (243)
T TIGR01978       175 LDIDALKIVAEGINRLREPDRSFLI  199 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHCCcEEEE
Confidence            9999998883     2235666555

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.94  E-value=7e-27  Score=221.01  Aligned_cols=158  Identities=25%  Similarity=0.365  Sum_probs=119.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh--hccccEEEEecCCc--cCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR--TVKRKTGFVAHSNV--FYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~--~~~~lT   75 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|..++.  ..+|+|.++|++...  ..++.++|++|+..  +.+.+|
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            589999999999999999999999999999999998731  168999999987653  22357999999974  567789


Q ss_pred             HHHHHHHHHH-------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           76 VTETLVFIAL-------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        76 v~e~l~f~~~-------------------~~~~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ++|++.+...                   ++++                 +||++||++|+.+|++++|||||+|||..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~  160 (230)
T TIGR02770        81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence            9988754321                   1122                 189999999999999999999999999999


Q ss_pred             HHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          120 AKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       120 ~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +..+.     +.. .|+++..-+            |+.+.....+|+++.+.+|.+..
T Consensus       161 ~~~l~~~l~~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~  206 (230)
T TIGR02770       161 QARVLKLLRELRQLFGTGILLIT------------HDLGVVARIADEVAVMDDGRIVE  206 (230)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence            98773     223 366655532            33333334567777777776543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.2e-27  Score=249.96  Aligned_cols=158  Identities=28%  Similarity=0.415  Sum_probs=123.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .||||+|++++|||++||+||||+||||+.+.|-+.++  +.+|+|.+||.++.+    .+++++|+|.|++.+|. -||
T Consensus       482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI  558 (716)
T KOG0058|consen  482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSI  558 (716)
T ss_pred             hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccH
Confidence            38999999999999999999999999999999999998  478999999999853    46789999999999985 599


Q ss_pred             HHHHHHHHH------------c--------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIAL------------F--------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~------------~--------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||+.|...            .        ++|                  +||++|||||+.||.+|||||.||+||++
T Consensus       559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDae  638 (716)
T KOG0058|consen  559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAE  638 (716)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchh
Confidence            999987421            0        111                  38999999999999999999999999999


Q ss_pred             HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      +...|.  +  +-+|++|..=.     +..+.        ..-||.++.+..|.+.+.++
T Consensus       639 SE~lVq~aL~~~~~~rTVlvIA-----HRLST--------V~~Ad~Ivvi~~G~V~E~G~  685 (716)
T KOG0058|consen  639 SEYLVQEALDRLMQGRTVLVIA-----HRLST--------VRHADQIVVIDKGRVVEMGT  685 (716)
T ss_pred             hHHHHHHHHHHhhcCCeEEEEe-----hhhhH--------hhhccEEEEEcCCeEEeccc
Confidence            998872  1  12345554311     11111        23366666777776665544

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.8e-27  Score=225.12  Aligned_cols=157  Identities=24%  Similarity=0.312  Sum_probs=119.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  . +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~  107 (260)
T PRK10744         28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP  107 (260)
T ss_pred             EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence            78999999999999999999999999999999999752  1 368999999987531      23567999999988877


Q ss_pred             CCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .||+||+.+...                    +++.                  +||++||++|+.+|++++|||||+|
T Consensus       108 -~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~  186 (260)
T PRK10744        108 -MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA  186 (260)
T ss_pred             -CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence             899999976421                    1110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.  +  +.+|.++..-+            |+.......+|+++.+.+|....
T Consensus       187 LD~~~~~~l~~~L~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~G~i~~  235 (260)
T PRK10744        187 LDPISTGRIEELITELKQDYTVVIVT------------HNMQQAARCSDYTAFMYLGELIE  235 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEEe------------CCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998873  1  12444443322            23222234567777777776543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=7.7e-27  Score=226.92  Aligned_cols=120  Identities=28%  Similarity=0.454  Sum_probs=103.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc-cCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV-FYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~-~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|+.. .++..||
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv   99 (277)
T PRK13642         22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV   99 (277)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence            7999999999999999999999999999999999987  467999999987642    34567999999963 5777899


Q ss_pred             HHHHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .||+.+.... +.+                                +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l  179 (277)
T PRK13642        100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI  179 (277)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            9999864321 100                                1899999999999999999999999999999888

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=2.2e-27  Score=253.33  Aligned_cols=159  Identities=23%  Similarity=0.328  Sum_probs=127.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.+||+||||||||||+++|+|.+ +  .+|+|.+||.+..+    ..++.++||+|++.+|+ -|++
T Consensus       365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~  440 (588)
T PRK11174        365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLR  440 (588)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHH
Confidence            799999999999999999999999999999999998 5  47999999988753    46778999999999885 5999


Q ss_pred             HHHHHHHH-c-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-F-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+... .                   ++|                  +||++|||+|+.+|++++||||||+||+.+
T Consensus       441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t  520 (588)
T PRK11174        441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS  520 (588)
T ss_pred             HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            99987521 0                   111                  289999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ  177 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~  177 (413)
                      +.++.  +  +.+++++..=            .|.... ...+|.++.+.+|+..+.++.++
T Consensus       521 e~~i~~~l~~~~~~~TvIiI------------tHrl~~-i~~aD~Iivl~~G~i~e~G~~~e  569 (588)
T PRK11174        521 EQLVMQALNAASRRQTTLMV------------THQLED-LAQWDQIWVMQDGQIVQQGDYAE  569 (588)
T ss_pred             HHHHHHHHHHHhCCCEEEEE------------ecChHH-HHhCCEEEEEeCCeEeecCCHHH
Confidence            99984  2  2356766542            233222 34489999998888776665443

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.94  E-value=3.5e-27  Score=223.81  Aligned_cols=155  Identities=25%  Similarity=0.383  Sum_probs=120.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|+..+++ .||+
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~   93 (237)
T cd03252          17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIR   93 (237)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHH
Confidence            7899999999999999999999999999999999987  467999999986532    34567999999987764 6999


Q ss_pred             HHHHHHHH-------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .+       ++                  +||++||++|+.+|++++|||||+|||..+
T Consensus        94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~  173 (237)
T cd03252          94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES  173 (237)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence            99875210             00       00                  189999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      +..+.    -+.+|+++..-+            |+..... .+|+++.+.+|+....
T Consensus       174 ~~~l~~~l~~~~~~~tiii~s------------H~~~~~~-~~d~v~~l~~G~i~~~  217 (237)
T cd03252         174 EHAIMRNMHDICAGRTVIIIA------------HRLSTVK-NADRIIVMEKGRIVEQ  217 (237)
T ss_pred             HHHHHHHHHHhcCCCEEEEEe------------CCHHHHH-hCCEEEEEECCEEEEE
Confidence            98873    223576655532            3333322 3777777877766443

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8e-27  Score=225.60  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=120.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|++++|||+++|+||||||||||+|+|+|..++.   +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  113 (267)
T PRK14235         34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP  113 (267)
T ss_pred             EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence            789999999999999999999999999999999998631   368999999987631      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           73 HLTVTETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        73 ~lTv~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      . ||+||+.+....                     ++.                  +||++||++|+.+|++++|||||+
T Consensus       114 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~  192 (267)
T PRK14235        114 K-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS  192 (267)
T ss_pred             C-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            5 999999864311                     110                  189999999999999999999999


Q ss_pred             CCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          114 GLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       114 gLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |||+.++..+.    -+.+|.++..-            .|+.....+.+|+++.+.+|....
T Consensus       193 ~LD~~~~~~l~~~L~~l~~~~tiiiv------------tH~~~~~~~~~d~v~~l~~G~i~~  242 (267)
T PRK14235        193 ALDPIATAKVEELIDELRQNYTIVIV------------THSMQQAARVSQRTAFFHLGNLVE  242 (267)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEEE------------EcCHHHHHhhCCEEEEEECCEEEE
Confidence            99999998883    12345544442            233333345567777777766543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=6.4e-27  Score=221.46  Aligned_cols=154  Identities=27%  Similarity=0.356  Sum_probs=120.6

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHHHH
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      .|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...  ..++.++|++|+..+++.+|++||+.
T Consensus        16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   93 (232)
T PRK10771         16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG   93 (232)
T ss_pred             ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence            48999999999999999999999999999999987  467999999987643  23457999999999999999999997


Q ss_pred             HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +....                   +++              +||++||++++.+|++++|||||+|||..++..+.    
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~  173 (232)
T PRK10771         94 LGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS  173 (232)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            64211                   010              18999999999999999999999999999998873    


Q ss_pred             -Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          125 -LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       125 -ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                       +.. .|.++..-+            |+.......+|+++.+.+|+...
T Consensus       174 ~~~~~~~~tiii~s------------H~~~~~~~~~d~i~~l~~g~i~~  210 (232)
T PRK10771        174 QVCQERQLTLLMVS------------HSLEDAARIAPRSLVVADGRIAW  210 (232)
T ss_pred             HHHHhcCCEEEEEE------------CCHHHHHHhCCEEEEEECCEEEE
Confidence             223 366655522            33333345577777777776543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.2e-27  Score=223.53  Aligned_cols=157  Identities=24%  Similarity=0.303  Sum_probs=121.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++.   ..+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~  100 (253)
T PRK14261         21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP  100 (253)
T ss_pred             eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc
Confidence            789999999999999999999999999999999986532   247999999987532      23456999999998887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL--------P----------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~--------~----------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      . ||+||+.+....                    ++        .          +||+.||++|+.+|++++|||||+|
T Consensus       101 ~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g  179 (253)
T PRK14261        101 K-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA  179 (253)
T ss_pred             c-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            4 999999874321                    11        0          1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.    -+.++.++-.-            .|+.+...+.+|+++.+.+|+...
T Consensus       180 LD~~~~~~l~~~l~~~~~~~tvii~------------sh~~~~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14261        180 LDPIATAKIEDLIEDLKKEYTVIIV------------THNMQQAARVSDYTGFMYLGKLIE  228 (253)
T ss_pred             CCHHHHHHHHHHHHHHhhCceEEEE------------EcCHHHHHhhCCEEEEEECCEEEE
Confidence            9999998883    12234444442            234444456678888777776544

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.94  E-value=1.2e-26  Score=215.21  Aligned_cols=131  Identities=30%  Similarity=0.416  Sum_probs=109.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|.+++  .+|+|.++|.+..   ...++.++|++|+..+++.+|++|
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   92 (201)
T cd03231          15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE   92 (201)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence            68999999999999999999999999999999999874  6799999998753   234567999999998889999999


Q ss_pred             HHHHHHHc-------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh
Q 048308           79 TLVFIALF-------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN  126 (413)
Q Consensus        79 ~l~f~~~~-------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll  126 (413)
                      ++.+....             +++              +||+++|++|+.+|++++|||||+|||+.++.++.     +.
T Consensus        93 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  172 (201)
T cd03231          93 NLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC  172 (201)
T ss_pred             HHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence            99764211             111              18999999999999999999999999999998883     22


Q ss_pred             cCCcEEEe
Q 048308          127 SEGNSLHV  134 (413)
Q Consensus       127 ~~G~~v~~  134 (413)
                      ++|.++..
T Consensus       173 ~~g~tiii  180 (201)
T cd03231         173 ARGGMVVL  180 (201)
T ss_pred             hCCCEEEE
Confidence            34665444

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.5e-27  Score=223.30  Aligned_cols=155  Identities=30%  Similarity=0.391  Sum_probs=121.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...    ..++.++|++|+..+++ .||+
T Consensus        18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~   94 (241)
T PRK14250         18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVK   94 (241)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHH
Confidence            7899999999999999999999999999999999987  467999999987532    33567999999988876 6999


Q ss_pred             HHHHHHHH---------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308           78 ETLVFIAL---------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---  124 (413)
Q Consensus        78 e~l~f~~~---------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---  124 (413)
                      |++.+...               ++++               +||+.||++|+.+|++++|||||+|||..++..+.   
T Consensus        95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (241)
T PRK14250         95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI  174 (241)
T ss_pred             HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            99875321               1221               18999999999999999999999999999998873   


Q ss_pred             --Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          125 --LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       125 --ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                        +.. +|.++..-+            |+.+...+.+|+++.+.+|....
T Consensus       175 ~~~~~~~g~tii~~s------------H~~~~~~~~~d~i~~l~~G~i~~  212 (241)
T PRK14250        175 VKLKNKMNLTVIWIT------------HNMEQAKRIGDYTAFLNKGILVE  212 (241)
T ss_pred             HHHHHhCCCEEEEEe------------ccHHHHHHhCCEEEEEeCCEEEE
Confidence              222 376665532            33333345577777777776543

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.9e-27  Score=229.67  Aligned_cols=155  Identities=25%  Similarity=0.328  Sum_probs=122.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+..+++.+|+.
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  103 (265)
T PRK10575         26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR  103 (265)
T ss_pred             EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHH
Confidence            7899999999999999999999999999999999987  467999999986532    3345799999998888899999


Q ss_pred             HHHHHHHH-----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL-----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~-----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+.+...                       ++++              +||+.||++|+.+|++++|||||+|||..++
T Consensus       104 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~  183 (265)
T PRK10575        104 ELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ  183 (265)
T ss_pred             HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            99986321                       0000              1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ..+.     +.. .|.++..-            .|+.+...+.+|+++.+.+|...
T Consensus       184 ~~~~~~l~~l~~~~~~tiii~------------sH~~~~i~~~~d~i~~l~~G~i~  227 (265)
T PRK10575        184 VDVLALVHRLSQERGLTVIAV------------LHDINMAARYCDYLVALRGGEMI  227 (265)
T ss_pred             HHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCeEE
Confidence            8873     223 36665542            34444445667888888777654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.6e-27  Score=226.96  Aligned_cols=158  Identities=24%  Similarity=0.328  Sum_probs=124.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+..+++.+|++
T Consensus        22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   99 (265)
T PRK10253         22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ   99 (265)
T ss_pred             EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence            7899999999999999999999999999999999987  467999999987532    2345799999999988899999


Q ss_pred             HHHHHHHH-----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL-----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~-----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |++.+...                       +++.              +||+.||++|+.+|++++|||||+|||+.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~  179 (265)
T PRK10253        100 ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ  179 (265)
T ss_pred             HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence            99976310                       0110              1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      ..+.     +.. .|.++-.-            .|+.....+.+|+++.+.+|.+...+
T Consensus       180 ~~l~~~L~~l~~~~~~tiii~------------tH~~~~~~~~~d~i~~l~~G~i~~~g  226 (265)
T PRK10253        180 IDLLELLSELNREKGYTLAAV------------LHDLNQACRYASHLIALREGKIVAQG  226 (265)
T ss_pred             HHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEeC
Confidence            8883     222 36655542            23443445667888888887765433

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.94  E-value=6.4e-27  Score=224.76  Aligned_cols=159  Identities=28%  Similarity=0.399  Sum_probs=125.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+..+++.+||+
T Consensus        16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (256)
T TIGR03873        16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR   93 (256)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence            7899999999999999999999999999999999987  467999999987542    2345699999998778889999


Q ss_pred             HHHHHHHH-----cCCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL-----FRLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~-----~~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+.+...     ...+                                +||+.||++|+.+|++++|||||+|||..++
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  173 (256)
T TIGR03873        94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ  173 (256)
T ss_pred             HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence            99976310     0000                                1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      ..+.     +..+|.++..-            .|+.+.....+|+++.+.+|.....++
T Consensus       174 ~~l~~~l~~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~~G~i~~~g~  220 (256)
T TIGR03873       174 LETLALVRELAATGVTVVAA------------LHDLNLAASYCDHVVVLDGGRVVAAGP  220 (256)
T ss_pred             HHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence            8883     22346655542            344444456688888888887654433

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.94  E-value=2.7e-27  Score=224.64  Aligned_cols=154  Identities=30%  Similarity=0.411  Sum_probs=119.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|+..+++ .||+
T Consensus        18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~   94 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIA   94 (238)
T ss_pred             ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHH
Confidence            7899999999999999999999999999999999987  467999999976532    23457999999988776 6999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      |++.+...             .       +++                  +||+.||++|+.+|++++|||||+|||+.+
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~  174 (238)
T cd03249          95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES  174 (238)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            99875310             0       010                  289999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +..+.  +  +.+|+++..-+            |+.+... .+|.++.+.+|....
T Consensus       175 ~~~l~~~l~~~~~g~~vi~~s------------h~~~~~~-~~d~v~~l~~G~i~~  217 (238)
T cd03249         175 EKLVQEALDRAMKGRTTIVIA------------HRLSTIR-NADLIAVLQNGQVVE  217 (238)
T ss_pred             HHHHHHHHHHhcCCCEEEEEe------------CCHHHHh-hCCEEEEEECCEEEE
Confidence            99883  1  12566554422            3333333 477777887776544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.94  E-value=6.8e-27  Score=225.31  Aligned_cols=159  Identities=26%  Similarity=0.409  Sum_probs=123.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh---------hccccEEEEecCCccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR---------TVKRKTGFVAHSNVFY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~---------~~~~~~~~v~q~~~~~   71 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++. ..+|+|.++|.+...         ..++.++|++|+..++
T Consensus        19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~   98 (262)
T PRK09984         19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLV   98 (262)
T ss_pred             EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccc
Confidence            789999999999999999999999999999999998753 246999999986531         2245699999999999


Q ss_pred             CCCCHHHHHHHHHH---------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeC
Q 048308           72 LHLTVTETLVFIAL---------------------------FRLP--------------IKRVSRAQELLINPSLLFLDE  110 (413)
Q Consensus        72 ~~lTv~e~l~f~~~---------------------------~~~~--------------~krvsia~~l~~~p~llllDE  110 (413)
                      +.+||+|++.+...                           ++++              +||+.||++|+.+|++++|||
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  178 (262)
T PRK09984         99 NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE  178 (262)
T ss_pred             cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            99999999976421                           0110              189999999999999999999


Q ss_pred             CCCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          111 PASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       111 PtsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ||+|||..++..+.     +.. +|.++..-            .|+.+.....+|+++.+.+|.....
T Consensus       179 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~------------tH~~~~~~~~~d~i~~l~~g~i~~~  234 (262)
T PRK09984        179 PIASLDPESARIVMDTLRDINQNDGITVVVT------------LHQVDYALRYCERIVALRQGHVFYD  234 (262)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999998883     222 36655442            2343333455788888877765433

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.5e-27  Score=224.25  Aligned_cols=157  Identities=25%  Similarity=0.348  Sum_probs=119.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++  . +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  106 (259)
T PRK14274         27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP  106 (259)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence            78999999999999999999999999999999998752  1 258999999987531      33567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      . ||+||+.+....                    ++.                  +||++||++|+.+|++++|||||+|
T Consensus       107 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~  185 (259)
T PRK14274        107 Q-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA  185 (259)
T ss_pred             c-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            5 999999764211                    110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.    -+.+|.++..-+            |+.....+.+|+++.+.+|+...
T Consensus       186 LD~~~~~~l~~~l~~~~~~~tiiivt------------H~~~~~~~~~d~i~~l~~G~i~~  234 (259)
T PRK14274        186 LDPVSTRKIEELILKLKEKYTIVIVT------------HNMQQAARVSDQTAFFYMGELVE  234 (259)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEE------------cCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998873    123455544422            23333335567777777776543

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=9e-27  Score=231.45  Aligned_cols=120  Identities=28%  Similarity=0.412  Sum_probs=103.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      +|+|||+++++||+++|+|+||||||||+++|+|++++  .+|+|.++|.++.+       ..++.++||+|+.  .+.+
T Consensus        30 ~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  107 (327)
T PRK11308         30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP  107 (327)
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence            68999999999999999999999999999999999874  67999999987632       2356799999997  5888


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           73 HLTVTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      .+||.+++......                    +++               +||+.||++|+.+|++|++||||+|||.
T Consensus       108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~  187 (327)
T PRK11308        108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV  187 (327)
T ss_pred             ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence            99999888643211                    111               1899999999999999999999999999


Q ss_pred             HHHHHH
Q 048308          118 TIAKQI  123 (413)
Q Consensus       118 ~~~~~i  123 (413)
                      .++.++
T Consensus       188 ~~~~~i  193 (327)
T PRK11308        188 SVQAQV  193 (327)
T ss_pred             HHHHHH
Confidence            999887

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.1e-26  Score=223.14  Aligned_cols=130  Identities=32%  Similarity=0.456  Sum_probs=108.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+... ..+.++|++|+..+++.+||+||+.
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l~   92 (255)
T PRK11248         16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNVA   92 (255)
T ss_pred             eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHHHHHH
Confidence            7899999999999999999999999999999999987  467999999987643 2345899999999899999999998


Q ss_pred             HHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           82 FIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        82 f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +.... +.+                                +||+.||++|+.+|++++|||||+|||+.++..+.    
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  172 (255)
T PRK11248         93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLL  172 (255)
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            74321 110                                18999999999999999999999999999998883    


Q ss_pred             -Hhc-CCcEEEe
Q 048308          125 -LNS-EGNSLHV  134 (413)
Q Consensus       125 -ll~-~G~~v~~  134 (413)
                       +.. +|.++..
T Consensus       173 ~~~~~~g~tvii  184 (255)
T PRK11248        173 KLWQETGKQVLL  184 (255)
T ss_pred             HHHHhcCCEEEE
Confidence             222 3766555

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.94  E-value=3.2e-27  Score=256.35  Aligned_cols=159  Identities=28%  Similarity=0.355  Sum_probs=126.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.+||+|+||||||||+|+|+|.++  +.+|+|.+||.++.+    ..++.++||+|++.+|+ -|++
T Consensus       468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~  544 (686)
T TIGR03797       468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIF  544 (686)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHH
Confidence            7999999999999999999999999999999999998  467999999998753    56788999999999885 5999


Q ss_pred             HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+.+...            .       ++|                  +||++|||+|+.+|++++||||||+||+.+.
T Consensus       545 eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te  624 (686)
T TIGR03797       545 ENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ  624 (686)
T ss_pred             HHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            99987411            0       111                  2899999999999999999999999999999


Q ss_pred             HHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          121 KQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       121 ~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      .++.  +.+.++++-.            +.|..... .-+|.++.+.+|++...++.+
T Consensus       625 ~~i~~~L~~~~~T~Ii------------ItHr~~~i-~~~D~Iivl~~G~iv~~G~~~  669 (686)
T TIGR03797       625 AIVSESLERLKVTRIV------------IAHRLSTI-RNADRIYVLDAGRVVQQGTYD  669 (686)
T ss_pred             HHHHHHHHHhCCeEEE------------EecChHHH-HcCCEEEEEECCEEEEECCHH
Confidence            9984  3333455433            22333222 337888888888776555433

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.1e-26  Score=230.85  Aligned_cols=158  Identities=24%  Similarity=0.341  Sum_probs=117.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh----h----ccccEEEEecCC--c
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR----T----VKRKTGFVAHSN--V   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~--~   69 (413)
                      +|+|||+++++||+++|+|+||||||||+++|+|++++.  ..+|+|.++|+++..    .    .++.++||+|+.  .
T Consensus        22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~  101 (326)
T PRK11022         22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTS  101 (326)
T ss_pred             EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhh
Confidence            799999999999999999999999999999999998632  368999999987632    1    124699999997  4


Q ss_pred             cCCCCCHHHHHHHHHH--------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308           70 FYLHLTVTETLVFIAL--------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEPA  112 (413)
Q Consensus        70 ~~~~lTv~e~l~f~~~--------------------~~~~-----------------~krvsia~~l~~~p~llllDEPt  112 (413)
                      +.|.+|+.+++.....                    ++++                 +||+.||++|+.+|++|++||||
T Consensus       102 l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPt  181 (326)
T PRK11022        102 LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT  181 (326)
T ss_pred             cCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            7889999877643211                    1221                 18999999999999999999999


Q ss_pred             CCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          113 SGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       113 sgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +|||..++.+++     +.. .|.++.+            +.|+.......+|+++.+..|++..
T Consensus       182 s~LD~~~~~~il~lL~~l~~~~g~til~------------iTHdl~~~~~~adri~vm~~G~ive  234 (326)
T PRK11022        182 TALDVTIQAQIIELLLELQQKENMALVL------------ITHDLALVAEAAHKIIVMYAGQVVE  234 (326)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCEEEE------------EeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999998883     112 2554444            2233333334466666666665543

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=8.3e-27  Score=227.99  Aligned_cols=155  Identities=19%  Similarity=0.319  Sum_probs=117.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---------hhccccEEEEecCCc-cC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---------RTVKRKTGFVAHSNV-FY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---------~~~~~~~~~v~q~~~-~~   71 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..         ...++.++|++|+.. .+
T Consensus        26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~  103 (289)
T PRK13645         26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL  103 (289)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence            7999999999999999999999999999999999987  46799999998652         123557999999863 22


Q ss_pred             CCCCHHHHHHHHHHc-------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           72 LHLTVTETLVFIALF-------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        72 ~~lTv~e~l~f~~~~-------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      ...||+||+.+....                   +++               +||+.||++|+.+|++++|||||+|||+
T Consensus       104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~  183 (289)
T PRK13645        104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP  183 (289)
T ss_pred             hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence            346999999875321                   121               1899999999999999999999999999


Q ss_pred             HHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          118 TIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       118 ~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .++..+.     +.. +|.++..-+            |+.+.....+|+++.+.+|...
T Consensus       184 ~~~~~l~~~l~~~~~~~~~tiiiis------------H~~~~~~~~~d~i~~l~~G~i~  230 (289)
T PRK13645        184 KGEEDFINLFERLNKEYKKRIIMVT------------HNMDQVLRIADEVIVMHEGKVI  230 (289)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEE
Confidence            9998873     223 366655533            2222223446666666666554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.94  E-value=8.4e-27  Score=216.03  Aligned_cols=158  Identities=27%  Similarity=0.335  Sum_probs=119.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +++|+|+++++||+++|+|+||||||||+|+|+|..+..+.+|+|.++|.+...    . .++.++|++|+..+++..|+
T Consensus        15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~   94 (200)
T cd03217          15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN   94 (200)
T ss_pred             eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccH
Confidence            789999999999999999999999999999999984212477999999987642    1 23459999999999999999


Q ss_pred             HHHHHHHH-HcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCC
Q 048308           77 TETLVFIA-LFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGF  149 (413)
Q Consensus        77 ~e~l~f~~-~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~  149 (413)
                      ++++.-.. .+. ..+||++||++|+.+|++++|||||+|||+.++..+.     +..+|.++..-+            |
T Consensus        95 ~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~s------------h  162 (200)
T cd03217          95 ADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT------------H  162 (200)
T ss_pred             HHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe------------c
Confidence            99883211 111 1238999999999999999999999999999998883     223476655533            2


Q ss_pred             CCCCCCC-hhHHHHHhhCCccCC
Q 048308          150 EPSAAMN-PSDFLLDLANGVVSG  171 (413)
Q Consensus       150 ~~p~~~n-~ad~~~~~~~~~~~~  171 (413)
                      +.+.... .+|+++.+.+|+...
T Consensus       163 ~~~~~~~~~~d~i~~l~~G~i~~  185 (200)
T cd03217         163 YQRLLDYIKPDRVHVLYDGRIVK  185 (200)
T ss_pred             CHHHHHHhhCCEEEEEECCEEEE
Confidence            2222223 466666666665543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=222.07  Aligned_cols=157  Identities=24%  Similarity=0.316  Sum_probs=121.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|++++.   +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   98 (251)
T PRK14249         19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP   98 (251)
T ss_pred             EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence            789999999999999999999999999999999998742   136999999987531      33567999999998887


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      . |++||+.+....                    ++.                  +||++||++|+.+|++++|||||+|
T Consensus        99 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~  177 (251)
T PRK14249         99 K-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA  177 (251)
T ss_pred             C-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            5 999999874311                    110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+.    -+.+|.++-.-            .|+.......+|+++.+.+|+...
T Consensus       178 LD~~~~~~l~~~l~~~~~~~tiliv------------sh~~~~~~~~~d~i~~l~~G~i~~  226 (251)
T PRK14249        178 LDPVSTMRIEELMQELKQNYTIAIV------------THNMQQAARASDWTGFLLTGDLVE  226 (251)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHhhCCEEEEEeCCeEEE
Confidence            9999998773    12345555442            233333345577777777776543

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.9e-27  Score=225.56  Aligned_cols=122  Identities=25%  Similarity=0.401  Sum_probs=102.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++.   +.+|+|.++|.+..      ...++.++|++|+..+++
T Consensus        28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  107 (269)
T PRK14259         28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP  107 (269)
T ss_pred             EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence            789999999999999999999999999999999987521   36899999998652      134567999999998887


Q ss_pred             CCCHHHHHHHHHHc------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIALF------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~~------------------~~------------------~~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                       .||+||+.+.+..                  ++                  .+||++||++|+.+|++++|||||+|||
T Consensus       108 -~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD  186 (269)
T PRK14259        108 -KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD  186 (269)
T ss_pred             -hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence             4999999864311                  11                  0189999999999999999999999999


Q ss_pred             HHHHHHHH
Q 048308          117 STIAKQIL  124 (413)
Q Consensus       117 ~~~~~~i~  124 (413)
                      +.++..+.
T Consensus       187 ~~~~~~l~  194 (269)
T PRK14259        187 PISTLKIE  194 (269)
T ss_pred             HHHHHHHH
Confidence            99998883

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1.9e-26  Score=214.70  Aligned_cols=131  Identities=31%  Similarity=0.474  Sum_probs=109.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+... ..++.++|++|++.+++.+||+|++
T Consensus        17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l   94 (207)
T PRK13539         17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENL   94 (207)
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHH
Confidence            6899999999999999999999999999999999987  467999999976432 2456789999998888899999999


Q ss_pred             HHHHHc---------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh
Q 048308           81 VFIALF---------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN  126 (413)
Q Consensus        81 ~f~~~~---------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll  126 (413)
                      .+....               ++.              +||++||++|+.+|++++|||||+|||+.++..+.     +.
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  174 (207)
T PRK13539         95 EFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL  174 (207)
T ss_pred             HHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            764322               110              18999999999999999999999999999999883     23


Q ss_pred             cCCcEEEe
Q 048308          127 SEGNSLHV  134 (413)
Q Consensus       127 ~~G~~v~~  134 (413)
                      ++|.++..
T Consensus       175 ~~~~tiii  182 (207)
T PRK13539        175 AQGGIVIA  182 (207)
T ss_pred             HCCCEEEE
Confidence            45766555

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=224.43  Aligned_cols=158  Identities=24%  Similarity=0.318  Sum_probs=122.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|++++.   +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  114 (267)
T PRK14237         35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA  114 (267)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence            789999999999999999999999999999999998631   468999999987632      23557999999988877


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .||+||+.+....                    ++.                  +||+.||++|+.+|++++|||||+|
T Consensus       115 -~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~  193 (267)
T PRK14237        115 -KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA  193 (267)
T ss_pred             -ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence             6999999874211                    110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ||+.++..+.    -+.+|.++..-            .|+.+...+.||+++.+.+|.....
T Consensus       194 LD~~~~~~l~~~l~~~~~~~tiii~------------tH~~~~~~~~~d~i~~l~~G~i~~~  243 (267)
T PRK14237        194 LDPISTMQLEETMFELKKNYTIIIV------------THNMQQAARASDYTAFFYLGDLIEY  243 (267)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEE------------ecCHHHHHHhcCEEEEEECCEEEEe
Confidence            9999998873    11345544442            2344444456788888877766443

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.94  E-value=4e-27  Score=222.11  Aligned_cols=154  Identities=27%  Similarity=0.354  Sum_probs=119.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.++|.+...    ..++.++|++|+..+++. |++
T Consensus        18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~   94 (229)
T cd03254          18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIM   94 (229)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHH
Confidence            7899999999999999999999999999999999987  467999999986532    345679999999887775 999


Q ss_pred             HHHHHHHH-------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      |++.+...             .+       ++                  +||+.||++|+.+|++++|||||+|||+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~  174 (229)
T cd03254          95 ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET  174 (229)
T ss_pred             HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            99875310             00       00                  289999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +..+.    -+.+|+++..-+            |+.+... .+|+++.+.+|....
T Consensus       175 ~~~l~~~l~~~~~~~tii~~s------------h~~~~~~-~~d~i~~l~~g~~~~  217 (229)
T cd03254         175 EKLIQEALEKLMKGRTSIIIA------------HRLSTIK-NADKILVLDDGKIIE  217 (229)
T ss_pred             HHHHHHHHHHhcCCCEEEEEe------------cCHHHHh-hCCEEEEEeCCeEEE
Confidence            98873    223566655532            2332222 367777777776543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.94  E-value=1.1e-26  Score=231.09  Aligned_cols=122  Identities=28%  Similarity=0.436  Sum_probs=102.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh----h---c-cccEEEEecCC--cc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR----T---V-KRKTGFVAHSN--VF   70 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~----~---~-~~~~~~v~q~~--~~   70 (413)
                      +++|||+++++||+++|+|+||||||||+++|+|++++. ..+|+|.++|.++..    .   . ++.++||+|+.  .+
T Consensus        31 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l  110 (330)
T PRK09473         31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSL  110 (330)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhc
Confidence            789999999999999999999999999999999998752 248999999987632    1   1 24799999997  68


Q ss_pred             CCCCCHHHHHHHHHH--------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           71 YLHLTVTETLVFIAL--------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        71 ~~~lTv~e~l~f~~~--------------------~~~~-----------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      .+.+|+.+++.....                    .+++                 +||+.||++|+.+|+++++||||+
T Consensus       111 ~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts  190 (330)
T PRK09473        111 NPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT  190 (330)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            899999988754321                    1111                 189999999999999999999999


Q ss_pred             CCCHHHHHHH
Q 048308          114 GLDSTIAKQI  123 (413)
Q Consensus       114 gLD~~~~~~i  123 (413)
                      |||..++.++
T Consensus       191 ~LD~~~~~~i  200 (330)
T PRK09473        191 ALDVTVQAQI  200 (330)
T ss_pred             cCCHHHHHHH
Confidence            9999999888

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1.4e-26  Score=215.14  Aligned_cols=131  Identities=26%  Similarity=0.413  Sum_probs=110.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++  .+|+|.++|.+..   ...++.++|++|++.+++.+|++|
T Consensus        16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e   93 (204)
T PRK13538         16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE   93 (204)
T ss_pred             EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH
Confidence            68999999999999999999999999999999999874  6799999998753   234567999999998999999999


Q ss_pred             HHHHHHHcC----------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           79 TLVFIALFR----------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        79 ~l~f~~~~~----------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      ++.+.....                +.              +||++||++|+.+|++++|||||+|||+.++..+.    
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  173 (204)
T PRK13538         94 NLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA  173 (204)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            998754321                10              18999999999999999999999999999999883    


Q ss_pred             -HhcCCcEEEe
Q 048308          125 -LNSEGNSLHV  134 (413)
Q Consensus       125 -ll~~G~~v~~  134 (413)
                       +-++|.++..
T Consensus       174 ~~~~~~~tiii  184 (204)
T PRK13538        174 QHAEQGGMVIL  184 (204)
T ss_pred             HHHHCCCEEEE
Confidence             1234666555

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.94  E-value=5.5e-27  Score=220.20  Aligned_cols=131  Identities=29%  Similarity=0.484  Sum_probs=110.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|.++  +.+|+|.++|.+...       ..++.++|++|+..+++++
T Consensus        20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (220)
T TIGR02982        20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL   97 (220)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence            7999999999999999999999999999999999987  467999999987632       2356799999999999999


Q ss_pred             CHHHHHHHHHHcC--Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           75 TVTETLVFIALFR--LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        75 Tv~e~l~f~~~~~--~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |+.||+.+.....  .+                                +||+.||++|+.+|++++|||||+|||+.++
T Consensus        98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~  177 (220)
T TIGR02982        98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG  177 (220)
T ss_pred             CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence            9999998764321  11                                1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEe
Q 048308          121 KQIL-----LNS-EGNSLHV  134 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~  134 (413)
                      ..+.     +.. +|+++..
T Consensus       178 ~~l~~~l~~~~~~~~~tii~  197 (220)
T TIGR02982       178 RDVVELMQKLAREQGCTILI  197 (220)
T ss_pred             HHHHHHHHHHHHHcCCEEEE
Confidence            8873     333 3666655

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=223.25  Aligned_cols=121  Identities=26%  Similarity=0.429  Sum_probs=102.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--eeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-E--TRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~--~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|.+++. +  .+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  101 (259)
T PRK14260         22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP  101 (259)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence            789999999999999999999999999999999997642 2  48999999986531      23457999999998887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .||+||+.+....                    ++    .              +||++||++|+.+|++++|||||+|
T Consensus       102 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~  180 (259)
T PRK14260        102 -MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA  180 (259)
T ss_pred             -ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence             8999999764211                    11    0              1899999999999999999999999


Q ss_pred             CCHHHHHHH
Q 048308          115 LDSTIAKQI  123 (413)
Q Consensus       115 LD~~~~~~i  123 (413)
                      ||+.++..+
T Consensus       181 LD~~~~~~l  189 (259)
T PRK14260        181 LDPIATMKV  189 (259)
T ss_pred             CCHHHHHHH
Confidence            999999887

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=7.5e-27  Score=245.09  Aligned_cols=157  Identities=23%  Similarity=0.298  Sum_probs=122.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++++.+|+|.++|.+...     ..++.++||+|+..+++.+||
T Consensus        20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   99 (506)
T PRK13549         20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSV   99 (506)
T ss_pred             eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcH
Confidence            789999999999999999999999999999999998743368999999987642     124569999999989999999


Q ss_pred             HHHHHHHHHcC----------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           77 TETLVFIALFR----------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        77 ~e~l~f~~~~~----------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +|++.+....+                      ++              +||+.||++|+.+|++++|||||+|||+.++
T Consensus       100 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~  179 (506)
T PRK13549        100 LENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESET  179 (506)
T ss_pred             HHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            99998753210                      10              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ..+.     +.++|.++..-+            |+.......||+++.+.+|+..
T Consensus       180 ~~l~~~l~~l~~~~~tvi~~t------------H~~~~~~~~~d~v~~l~~G~i~  222 (506)
T PRK13549        180 AVLLDIIRDLKAHGIACIYIS------------HKLNEVKAISDTICVIRDGRHI  222 (506)
T ss_pred             HHHHHHHHHHHHCCCEEEEEe------------CcHHHHHHhcCEEEEEECCEEe
Confidence            8883     223455554422            3333334456666666666543

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.5e-26  Score=221.57  Aligned_cols=157  Identities=25%  Similarity=0.338  Sum_probs=119.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +. ..+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   99 (252)
T PRK14255         20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP   99 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence            7899999999999999999999999999999999864  21 248999999987531      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .|++||+.+....                    ++    +              +||++||++|+.+|++++|||||+|
T Consensus       100 -~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~  178 (252)
T PRK14255        100 -FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA  178 (252)
T ss_pred             -CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence             6999999864211                    00    0              1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+.    -+.++.++..-            .|+.......+|+++.+.+|....
T Consensus       179 LD~~~~~~l~~~l~~~~~~~tii~v------------sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14255        179 LDPISSTQIENMLLELRDQYTIILV------------THSMHQASRISDKTAFFLTGNLIE  227 (252)
T ss_pred             CCHHHHHHHHHHHHHHHhCCEEEEE------------ECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998883    11233443331            233333345577777777776543

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.94  E-value=1.1e-26  Score=224.58  Aligned_cols=156  Identities=24%  Similarity=0.344  Sum_probs=120.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCc--cCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNV--FYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~--~~~~lT   75 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|+..  +++.+|
T Consensus        28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t  105 (267)
T PRK15112         28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR  105 (267)
T ss_pred             eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence            7899999999999999999999999999999999987  467999999987642    22356999999864  567889


Q ss_pred             HHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           76 VTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        76 v~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +.|++.+....                    ++.               +||++||++|+.+|++++|||||+|||+.++
T Consensus       106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~  185 (267)
T PRK15112        106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR  185 (267)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence            99888654321                    110               1899999999999999999999999999999


Q ss_pred             HHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          121 KQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       121 ~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ..+.     +.+ .|.++..-+            |+.....+.+|+++.+.+|....
T Consensus       186 ~~l~~~l~~~~~~~g~tviivs------------H~~~~~~~~~d~i~~l~~G~i~~  230 (267)
T PRK15112        186 SQLINLMLELQEKQGISYIYVT------------QHLGMMKHISDQVLVMHQGEVVE  230 (267)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEe------------CCHHHHHHhcCEEEEEECCEEEe
Confidence            8873     222 376655522            33333345577777777776543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.94  E-value=5.7e-27  Score=221.78  Aligned_cols=155  Identities=26%  Similarity=0.389  Sum_probs=121.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+..+    ..++.++|++|+..+++ .||+
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~   93 (234)
T cd03251          17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVA   93 (234)
T ss_pred             ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHH
Confidence            7899999999999999999999999999999999987  467999999986532    33567999999988776 6999


Q ss_pred             HHHHHHHH----------------------c--CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL----------------------F--RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~----------------------~--~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...                      +  ++              .+||+.||++|+.+|++++|||||+|||+.+
T Consensus        94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  173 (234)
T cd03251          94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES  173 (234)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            99976310                      0  00              0289999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      +..+.  +  +.+|.++..-+            |+...... +|+++.+.+|.....
T Consensus       174 ~~~l~~~l~~~~~~~tii~~s------------h~~~~~~~-~d~v~~l~~G~i~~~  217 (234)
T cd03251         174 ERLVQAALERLMKNRTTFVIA------------HRLSTIEN-ADRIVVLEDGKIVER  217 (234)
T ss_pred             HHHHHHHHHHhcCCCEEEEEe------------cCHHHHhh-CCEEEEecCCeEeee
Confidence            99883  1  23566655532            33333333 788888888876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.4e-26  Score=221.69  Aligned_cols=156  Identities=22%  Similarity=0.286  Sum_probs=119.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|..++  . +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~   99 (251)
T PRK14244         20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP   99 (251)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence            78999999999999999999999999999999999752  1 368999999987532      23567999999988887


Q ss_pred             CCCHHHHHHHHHH---------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           73 HLTVTETLVFIAL---------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        73 ~lTv~e~l~f~~~---------------------~~~~------------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      . ||+||+.+...                     +++.                  +||++||++|+.+|++++|||||+
T Consensus       100 ~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~  178 (251)
T PRK14244        100 K-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCS  178 (251)
T ss_pred             C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            5 99999876421                     1110                  189999999999999999999999


Q ss_pred             CCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          114 GLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       114 gLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      |||..++..+.    -+.+|.++..-+            |+.......+|+++.+.+|...
T Consensus       179 ~LD~~~~~~l~~~l~~~~~~~tiiiis------------H~~~~~~~~~d~i~~l~~G~i~  227 (251)
T PRK14244        179 ALDPVATNVIENLIQELKKNFTIIVVT------------HSMKQAKKVSDRVAFFQSGRIV  227 (251)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCeEEEEe------------CCHHHHHhhcCEEEEEECCEEE
Confidence            99999998883    123466555422            2333333557777777777654

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.8e-26  Score=222.53  Aligned_cols=150  Identities=19%  Similarity=0.285  Sum_probs=116.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|++++|||+++|+|+||||||||+|+|+|.+++.   +.+|+|.++|.+...      ..++.++|++|+..++ 
T Consensus        23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-  101 (261)
T PRK14263         23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-  101 (261)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-
Confidence            689999999999999999999999999999999998641   258999999987531      2356799999998877 


Q ss_pred             CCCHHHHHHHHHHc------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIALF------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~~------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      .+|++||+.+....                  ++.                  +||++||++|+.+|++++|||||+|||
T Consensus       102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD  181 (261)
T PRK14263        102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD  181 (261)
T ss_pred             cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence            59999999865321                  110                  189999999999999999999999999


Q ss_pred             HHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308          117 STIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL  164 (413)
Q Consensus       117 ~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~  164 (413)
                      +.++.++.    -+.+|.++..-            .|+.......+|+++.+
T Consensus       182 ~~~~~~l~~~l~~~~~~~tii~i------------sH~~~~i~~~~d~v~~l  221 (261)
T PRK14263        182 PIATRRVEELMVELKKDYTIALV------------THNMQQAIRVADTTAFF  221 (261)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHHhCCEEEEE
Confidence            99999883    12345554442            23333334556666666

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.8e-26  Score=223.20  Aligned_cols=157  Identities=24%  Similarity=0.332  Sum_probs=118.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--T-GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|..+  + .+.+|+|.++|++...      ..++.++|++|+..+++
T Consensus        36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  115 (268)
T PRK14248         36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP  115 (268)
T ss_pred             eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence            7899999999999999999999999999999999753  1 1467999999987631      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~------------------~~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      . |++||+.+....                    ++                  .+||+.||++|+.+|++++|||||+|
T Consensus       116 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~  194 (268)
T PRK14248        116 K-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA  194 (268)
T ss_pred             c-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcc
Confidence            5 999998753210                    11                  01899999999999999999999999


Q ss_pred             CCHHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||..++..+.  +  +.+|.++..-+            |+.......+|+++.+.+|....
T Consensus       195 LD~~~~~~l~~~l~~~~~~~tiii~t------------H~~~~~~~~~d~v~~l~~G~i~~  243 (268)
T PRK14248        195 LDPISNAKIEELITELKEEYSIIIVT------------HNMQQALRVSDRTAFFLNGDLVE  243 (268)
T ss_pred             cCHHHHHHHHHHHHHHhcCCEEEEEE------------eCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998883  1  13355544422            23222334567777777766543

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.4e-26  Score=207.96  Aligned_cols=131  Identities=31%  Similarity=0.477  Sum_probs=112.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++.+||.++++||||||||||||+++|...  +..|+|.+||++++.. ...-|.|+|++.++|.+||.||+.
T Consensus        20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNva   96 (259)
T COG4525          20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVA   96 (259)
T ss_pred             hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-CccceeEeccCccchhhHHHHHHH
Confidence            6899999999999999999999999999999999987  4679999999987642 234678999999999999999999


Q ss_pred             HHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh
Q 048308           82 FIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN  126 (413)
Q Consensus        82 f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll  126 (413)
                      |..+++. +                                +||+.|||||+.+|++|+||||+..||+.+++++.  ++
T Consensus        97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLl  176 (259)
T COG4525          97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL  176 (259)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHH
Confidence            9876642 1                                18999999999999999999999999999999882  22


Q ss_pred             c----CCcEEEec
Q 048308          127 S----EGNSLHVG  135 (413)
Q Consensus       127 ~----~G~~v~~G  135 (413)
                      +    .|+.++.-
T Consensus       177 dlw~~tgk~~lli  189 (259)
T COG4525         177 DLWQETGKQVLLI  189 (259)
T ss_pred             HHHHHhCCeEEEE
Confidence            2    46665553

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.9e-26  Score=223.62  Aligned_cols=157  Identities=23%  Similarity=0.284  Sum_probs=120.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|++++.   +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  119 (272)
T PRK14236         40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP  119 (272)
T ss_pred             EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc
Confidence            689999999999999999999999999999999997631   368999999987632      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      . |++||+.+....                    ++.                  +||++||++|+.+|++++|||||+|
T Consensus       120 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~g  198 (272)
T PRK14236        120 K-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSA  198 (272)
T ss_pred             c-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence            6 999999764210                    110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+.    -+.+|.++..-            .|+.......+|+++.+.+|+...
T Consensus       199 LD~~~~~~l~~~L~~~~~~~tiiiv------------tH~~~~~~~~~d~i~~l~~G~i~~  247 (272)
T PRK14236        199 LDPISTLKIEELITELKSKYTIVIV------------THNMQQAARVSDYTAFMYMGKLVE  247 (272)
T ss_pred             CCHHHHHHHHHHHHHHHhCCeEEEE------------eCCHHHHHhhCCEEEEEECCEEEe
Confidence            9999998873    11234444442            233333335577777777776544

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=5.6e-27  Score=250.40  Aligned_cols=159  Identities=26%  Similarity=0.363  Sum_probs=126.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+|+||||||||+|+|+|++++  .+|+|.+||.++++    ..++.++||+|++.+|+. |++
T Consensus       356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~  432 (592)
T PRK10790        356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFL  432 (592)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHH
Confidence            79999999999999999999999999999999999984  67999999988753    567889999999999876 999


Q ss_pred             HHHHHHHHc-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIALF-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+.+....                   ++|                  +||++|||+|+.+|++++||||||+||+.++
T Consensus       433 ~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~  512 (592)
T PRK10790        433 ANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE  512 (592)
T ss_pred             HHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence            999875210                   111                  2899999999999999999999999999999


Q ss_pred             HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      ..+.  +  +.+++++..=            .|..+. ..-+|.++.+.+|+....++.+
T Consensus       513 ~~i~~~l~~~~~~~tvIiv------------tHr~~~-l~~~D~ii~l~~G~i~~~G~~~  559 (592)
T PRK10790        513 QAIQQALAAVREHTTLVVI------------AHRLST-IVEADTILVLHRGQAVEQGTHQ  559 (592)
T ss_pred             HHHHHHHHHHhCCCEEEEE------------ecchHH-HHhCCEEEEEECCEEEEEcCHH
Confidence            9884  2  2245555442            233222 2337888888888776555433

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.94  E-value=1.1e-26  Score=218.41  Aligned_cols=132  Identities=26%  Similarity=0.372  Sum_probs=107.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC--Cc--ccC---h-----hccccEEEEecCCc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN--NN--PLS---R-----TVKRKTGFVAHSNV   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~--g~--~~~---~-----~~~~~~~~v~q~~~   69 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++  .+|+|.++  |.  +..   .     ..++.++|++|+..
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~  100 (224)
T TIGR02324        23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR  100 (224)
T ss_pred             EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence            79999999999999999999999999999999999874  67999998  42  321   1     12346999999999


Q ss_pred             cCCCCCHHHHHHHHHHc-C------------------Cc---------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           70 FYLHLTVTETLVFIALF-R------------------LP---------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        70 ~~~~lTv~e~l~f~~~~-~------------------~~---------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      +++.+||+|++.+.... +                  ++               +||+.||++|+.+|++++|||||+||
T Consensus       101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L  180 (224)
T TIGR02324       101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL  180 (224)
T ss_pred             cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            99999999999764211 1                  10               18999999999999999999999999


Q ss_pred             CHHHHHHHH-----HhcCCcEEEec
Q 048308          116 DSTIAKQIL-----LNSEGNSLHVG  135 (413)
Q Consensus       116 D~~~~~~i~-----ll~~G~~v~~G  135 (413)
                      |+.++..+.     +.++|.++..-
T Consensus       181 D~~~~~~l~~~l~~~~~~g~tii~v  205 (224)
T TIGR02324       181 DAANRQVVVELIAEAKARGAALIGI  205 (224)
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            999999883     22357665553

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=6.2e-26  Score=209.24  Aligned_cols=130  Identities=24%  Similarity=0.304  Sum_probs=107.3

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      +.++|+++++||+++|+|+||||||||+++|+|..+  +.+|+|.++|.+..+..++.++|++|+..+++.+||+||+.+
T Consensus        16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~   93 (195)
T PRK13541         16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF   93 (195)
T ss_pred             EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence            445999999999999999999999999999999987  467999999987654334568999999888889999999976


Q ss_pred             HHHc--------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCC
Q 048308           83 IALF--------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG  129 (413)
Q Consensus        83 ~~~~--------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G  129 (413)
                      ....              +++              +||++||++++.+|++++|||||+|||+.++..+.     ...+|
T Consensus        94 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~  173 (195)
T PRK13541         94 WSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG  173 (195)
T ss_pred             HHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence            4321              111              18999999999999999999999999999998883     22356


Q ss_pred             cEEEe
Q 048308          130 NSLHV  134 (413)
Q Consensus       130 ~~v~~  134 (413)
                      .++..
T Consensus       174 ~tiii  178 (195)
T PRK13541        174 GIVLL  178 (195)
T ss_pred             CEEEE
Confidence            66555

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.94  E-value=8.5e-27  Score=218.74  Aligned_cols=119  Identities=24%  Similarity=0.328  Sum_probs=101.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+..+    ..++.++|++|+..+++ .||+
T Consensus        19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~   95 (221)
T cd03244          19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIR   95 (221)
T ss_pred             cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHH
Confidence            7999999999999999999999999999999999987  467999999987532    34667999999988765 5999


Q ss_pred             HHHHHHH------------HcCC-------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIA------------LFRL-------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~------------~~~~-------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+.+..            .+++                         .+||+.||++|+.+|++++|||||+|||+.++
T Consensus        96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~  175 (221)
T cd03244          96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD  175 (221)
T ss_pred             HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence            9985310            0000                         02899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      ..+
T Consensus       176 ~~l  178 (221)
T cd03244         176 ALI  178 (221)
T ss_pred             HHH
Confidence            887

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.3e-27  Score=239.71  Aligned_cols=161  Identities=27%  Similarity=0.382  Sum_probs=131.8

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++++|+|+++++|+.++|+|+||||||||+++|+|+.+  +.+|+|.+||.+..    +.+++++++|+|++.+++. |+
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-Ti  411 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TI  411 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cH
Confidence            36899999999999999999999999999999999997  47899999998864    3678899999999998865 99


Q ss_pred             HHHHHHHHH-------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           77 TETLVFIAL-------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        77 ~e~l~f~~~-------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      |||+.++..                   .+.|                  .||+.+||+|+.+++++++||||++||.++
T Consensus       412 reNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et  491 (559)
T COG4988         412 RENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET  491 (559)
T ss_pred             HHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence            999987531                   0111                  189999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ  177 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~  177 (413)
                      .+.|+    -+++++++..-+            |..+. .--+|.++.+.+|+....+..++
T Consensus       492 E~~i~~~l~~l~~~ktvl~it------------Hrl~~-~~~~D~I~vld~G~l~~~g~~~~  540 (559)
T COG4988         492 EQIILQALQELAKQKTVLVIT------------HRLED-AADADRIVVLDNGRLVEQGTHEE  540 (559)
T ss_pred             HHHHHHHHHHHHhCCeEEEEE------------cChHH-HhcCCEEEEecCCceeccCCHHH
Confidence            98873    455778877733            33322 34478888899888776665444

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.94  E-value=6.8e-27  Score=254.72  Aligned_cols=158  Identities=25%  Similarity=0.356  Sum_probs=126.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|++.+|+ .|++
T Consensus       494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~  570 (710)
T TIGR03796       494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVR  570 (710)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHH
Confidence            7999999999999999999999999999999999997  467999999988743    46788999999998885 5999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+++|++++||||||+||+.+
T Consensus       571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t  650 (710)
T TIGR03796       571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET  650 (710)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence            99976310             0       111                  289999999999999999999999999999


Q ss_pred             HHHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      ..++.  +.+.|+++..            +.|..... .-+|+++.+.+|++...++.
T Consensus       651 e~~i~~~l~~~~~T~Ii------------itHrl~~i-~~~D~Iivl~~G~i~~~G~~  695 (710)
T TIGR03796       651 EKIIDDNLRRRGCTCII------------VAHRLSTI-RDCDEIIVLERGKVVQRGTH  695 (710)
T ss_pred             HHHHHHHHHhcCCEEEE------------EecCHHHH-HhCCEEEEEeCCEEEEecCH
Confidence            99984  4445665544            22333322 23788888888877655443

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3e-26  Score=222.72  Aligned_cols=157  Identities=20%  Similarity=0.295  Sum_probs=120.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh-----hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++.   +.+|+|.++|.+...     ..++.++|++|+..+++ 
T Consensus        36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-  114 (276)
T PRK14271         36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-  114 (276)
T ss_pred             EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-
Confidence            789999999999999999999999999999999998642   368999999987532     34567999999988887 


Q ss_pred             CCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           74 LTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        74 lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      .|++||+.+...                    +++.                  +||+.||++|+.+|++++|||||+||
T Consensus       115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~L  194 (276)
T PRK14271        115 MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL  194 (276)
T ss_pred             ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            899999976421                    1111                  18999999999999999999999999


Q ss_pred             CHHHHHHHH-Hh---cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          116 DSTIAKQIL-LN---SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       116 D~~~~~~i~-ll---~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |..++..+. ++   .++.++..            ..|+.+...+.+|+++.+.+|....
T Consensus       195 D~~~~~~l~~~L~~~~~~~tiii------------vsH~~~~~~~~~dri~~l~~G~i~~  242 (276)
T PRK14271        195 DPTTTEKIEEFIRSLADRLTVII------------VTHNLAQAARISDRAALFFDGRLVE  242 (276)
T ss_pred             CHHHHHHHHHHHHHHhcCCEEEE------------EeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999998873 11   22333333            1233333345577777777776543

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.3e-26  Score=219.00  Aligned_cols=157  Identities=24%  Similarity=0.317  Sum_probs=118.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|.+++  . +.+|+|.++|.+...      ..++.++|++|++.+++
T Consensus        19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14251         19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP   98 (251)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence            78999999999999999999999999999999999752  1 368999999987531      23567999999988876


Q ss_pred             CCCHHHHHHHHHH--------------------cCC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIAL--------------------FRL--------P----------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~--------~----------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .||+||+.+...                    +++        .          +||++||++|+.+|++++|||||+|
T Consensus        99 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~  177 (251)
T PRK14251         99 -FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA  177 (251)
T ss_pred             -CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcc
Confidence             799999976421                    011        0          1899999999999999999999999


Q ss_pred             CCHHHHHHHH-Hh---cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL-LN---SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~-ll---~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+. ++   .+|.++..-+            |+.......+|+++.+.+|....
T Consensus       178 LD~~~~~~l~~~l~~~~~~~tiiiis------------H~~~~~~~~~d~i~~l~~G~i~~  226 (251)
T PRK14251        178 LDPISSSEIEETLMELKHQYTFIMVT------------HNLQQAGRISDQTAFLMNGDLIE  226 (251)
T ss_pred             CCHHHHHHHHHHHHHHHcCCeEEEEE------------CCHHHHHhhcCEEEEEECCEEEE
Confidence            9999998883 11   2344443322            23222234467777777776543

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.94  E-value=7.8e-27  Score=254.17  Aligned_cols=159  Identities=26%  Similarity=0.379  Sum_probs=125.8

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|++++|||.++|+||||||||||+|+|+|++++  .+|+|.+||.++.+    ..++.++||+|++.+|+. |+
T Consensus       488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI  564 (708)
T TIGR01193       488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SI  564 (708)
T ss_pred             cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HH
Confidence            379999999999999999999999999999999999984  67999999987642    567789999999998865 99


Q ss_pred             HHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           77 TETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        77 ~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +||+.+....                     ++|                  +||++|||+++.+|++++||||||+||+
T Consensus       565 ~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~  644 (708)
T TIGR01193       565 LENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT  644 (708)
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence            9999875210                     111                  1899999999999999999999999999


Q ss_pred             HHHHHHH--Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          118 TIAKQIL--LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       118 ~~~~~i~--ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      .+...+.  +.+ +|+++-.            +.|.... ...+|.++.+.+|+....++.
T Consensus       645 ~te~~i~~~L~~~~~~T~Ii------------itHr~~~-~~~~D~i~~l~~G~i~~~G~~  692 (708)
T TIGR01193       645 ITEKKIVNNLLNLQDKTIIF------------VAHRLSV-AKQSDKIIVLDHGKIIEQGSH  692 (708)
T ss_pred             HHHHHHHHHHHHhcCCEEEE------------EecchHH-HHcCCEEEEEECCEEEEECCH
Confidence            9999884  222 4555443            2233322 244788888888877655543

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.94  E-value=1.3e-26  Score=215.58  Aligned_cols=152  Identities=22%  Similarity=0.292  Sum_probs=116.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+.+++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...    ..++.++|++|+..+++ .|++
T Consensus        23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~   99 (207)
T cd03369          23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIR   99 (207)
T ss_pred             cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHH
Confidence            7899999999999999999999999999999999987  467999999987532    34567999999987776 5999


Q ss_pred             HHHHHHHH---------cCC----------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh---cCCcEEEe
Q 048308           78 ETLVFIAL---------FRL----------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN---SEGNSLHV  134 (413)
Q Consensus        78 e~l~f~~~---------~~~----------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll---~~G~~v~~  134 (413)
                      ||+.+...         +++          ..||+.||++|+.+|++++|||||+|||+.++..+. ++   .+|.++-.
T Consensus       100 ~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii  179 (207)
T cd03369         100 SNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILT  179 (207)
T ss_pred             HHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99964311         111          128999999999999999999999999999998873 11   34655444


Q ss_pred             cCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          135 GKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       135 G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      -            .|+...... +|+++.+.+|..
T Consensus       180 ~------------th~~~~~~~-~d~v~~l~~g~i  201 (207)
T cd03369         180 I------------AHRLRTIID-YDKILVMDAGEV  201 (207)
T ss_pred             E------------eCCHHHHhh-CCEEEEEECCEE
Confidence            2            223222222 567666666654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.94  E-value=2.2e-26  Score=220.23  Aligned_cols=156  Identities=24%  Similarity=0.378  Sum_probs=121.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+   .+|+|.++|.+..+    ..++.++|++|+..+++.+|++
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~   87 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF   87 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence            5899999999999999999999999999999999874   37999999987632    2345689999998888889999


Q ss_pred             HHHHHHHHc------------------CCc--------------hhHHHHHHHHhh-------CCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIALF------------------RLP--------------IKRVSRAQELLI-------NPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~~~------------------~~~--------------~krvsia~~l~~-------~p~llllDEPtsgLD~~  118 (413)
                      ||+.+....                  ++.              +||+.||++|+.       +|++++|||||+|||+.
T Consensus        88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~  167 (248)
T PRK03695         88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA  167 (248)
T ss_pred             HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence            999864211                  110              189999999998       67999999999999999


Q ss_pred             HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ++..+.     +.++|.++..-+            |+.......+|+++.+.+|+....
T Consensus       168 ~~~~l~~~L~~~~~~~~tvi~~s------------H~~~~~~~~~d~i~~l~~G~i~~~  214 (248)
T PRK03695        168 QQAALDRLLSELCQQGIAVVMSS------------HDLNHTLRHADRVWLLKQGKLLAS  214 (248)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEe------------cCHHHHHHhCCEEEEEECCEEEEE
Confidence            998883     223566655422            333333455778888877776443

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.2e-26  Score=223.58  Aligned_cols=158  Identities=22%  Similarity=0.354  Sum_probs=119.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--CC-CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--TG-ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|+.+  +. +.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  133 (286)
T PRK14275         54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP  133 (286)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc
Confidence            6899999999999999999999999999999999753  21 268999999987531      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC----c--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL----P--------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~----~--------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      . ||+||+.+....                    ++    .              +||+.||++|+.+|++++|||||+|
T Consensus       134 ~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~g  212 (286)
T PRK14275        134 K-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSA  212 (286)
T ss_pred             c-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            5 999999864211                    11    0              1899999999999999999999999


Q ss_pred             CCHHHHHHHH-H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          115 LDSTIAKQIL-L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       115 LD~~~~~~i~-l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ||..++..+. +   +.++.++..-            .|+.....+.+|+++.+.+|.....
T Consensus       213 LD~~~~~~l~~~L~~~~~~~tvIiv------------sH~~~~~~~~~d~i~~L~~G~i~~~  262 (286)
T PRK14275        213 LDPKATAKIEDLIQELRGSYTIMIV------------THNMQQASRVSDYTMFFYEGVLVEH  262 (286)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999998883 1   1234444332            2333333455777777777765433

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.4e-26  Score=221.66  Aligned_cols=157  Identities=25%  Similarity=0.315  Sum_probs=120.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS--T-GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|.++  + .+.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  118 (271)
T PRK14238         39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP  118 (271)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence            7899999999999999999999999999999999875  2 1368999999987531      23567999999988877


Q ss_pred             CCCHHHHHHHHHHc-C-----------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF-R-----------------------LP--------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~-~-----------------------~~--------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .||+||+.+.... +                       +.              +||+.||++|+.+|++++|||||+|
T Consensus       119 -~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~  197 (271)
T PRK14238        119 -KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA  197 (271)
T ss_pred             -ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence             5999999764211 0                       00              1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+.    -+.+|.++..-            .|+.+.....+|+++.+.+|....
T Consensus       198 LD~~~~~~l~~~l~~~~~~~tiiiv------------sH~~~~i~~~~d~i~~l~~G~i~~  246 (271)
T PRK14238        198 LDPISTLKVEELVQELKKDYSIIIV------------THNMQQAARISDKTAFFLNGYVNE  246 (271)
T ss_pred             CCHHHHHHHHHHHHHHHcCCEEEEE------------EcCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998883    12345554442            233333345577777777776543

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.94  E-value=1e-26  Score=247.94  Aligned_cols=159  Identities=21%  Similarity=0.338  Sum_probs=126.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+|+||||||||+|+|+|.+++  .+|+|.+||.+.++    .+++.++||+|++.+|+ -|++
T Consensus       358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~  434 (582)
T PRK11176        358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIA  434 (582)
T ss_pred             cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHH
Confidence            79999999999999999999999999999999999974  67999999998653    45678999999999886 5999


Q ss_pred             HHHHHHHH--------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIAL--------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~~--------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ||+.+...              .       ++|                  +||++|||+|+++|++++||||||+||+.
T Consensus       435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~  514 (582)
T PRK11176        435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE  514 (582)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence            99987310              0       111                  18999999999999999999999999999


Q ss_pred             HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      ++..+.  +  +.+++++-.=            .|+... ...+|.++.+.+|++.+.++.+
T Consensus       515 t~~~i~~~l~~~~~~~tvI~V------------tHr~~~-~~~~D~Ii~l~~g~i~e~g~~~  563 (582)
T PRK11176        515 SERAIQAALDELQKNRTSLVI------------AHRLST-IEKADEILVVEDGEIVERGTHA  563 (582)
T ss_pred             HHHHHHHHHHHHhCCCEEEEE------------ecchHH-HHhCCEEEEEECCEEEEeCCHH
Confidence            999884  2  2356665542            233322 3448888888888776655443

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.3e-26  Score=222.13  Aligned_cols=151  Identities=21%  Similarity=0.319  Sum_probs=115.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++.   ..+|+|.++|.+..      ...++.++|++|+..+++
T Consensus        35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~  114 (274)
T PRK14265         35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP  114 (274)
T ss_pred             EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc
Confidence            789999999999999999999999999999999997532   25799999998753      133567999999988876


Q ss_pred             CCCHHHHHHHHHH------------------cCC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIAL------------------FRL--------P----------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~------------------~~~--------~----------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      . ||+||+.+...                  .++        +          +||+.||++|+.+|++++|||||+|||
T Consensus       115 ~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD  193 (274)
T PRK14265        115 K-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD  193 (274)
T ss_pred             c-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence            4 99999976421                  011        0          189999999999999999999999999


Q ss_pred             HHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308          117 STIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA  165 (413)
Q Consensus       117 ~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~  165 (413)
                      ..++..+.  +  +.+|.++..-            .|+.+.....+|+++.+.
T Consensus       194 ~~~~~~l~~~L~~~~~~~tiii~------------sH~~~~~~~~~d~i~~l~  234 (274)
T PRK14265        194 PISTRQVEELCLELKEQYTIIMV------------THNMQQASRVADWTAFFN  234 (274)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEe
Confidence            99999883  1  1334444442            234333445566666664

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.6e-26  Score=222.37  Aligned_cols=121  Identities=21%  Similarity=0.374  Sum_probs=102.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+++   .+.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~  133 (285)
T PRK14254         54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP  133 (285)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc
Confidence            78999999999999999999999999999999999762   1368999999987521      34567999999988887


Q ss_pred             CCCHHHHHHHHHH------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIAL------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      . ||+||+.+...                  +++.                  +||++||++|+.+|++++|||||+|||
T Consensus       134 ~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD  212 (285)
T PRK14254        134 K-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD  212 (285)
T ss_pred             C-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence            5 99999976421                  1110                  189999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          117 STIAKQI  123 (413)
Q Consensus       117 ~~~~~~i  123 (413)
                      ..++..+
T Consensus       213 ~~~~~~l  219 (285)
T PRK14254        213 PVATSKI  219 (285)
T ss_pred             HHHHHHH
Confidence            9999888

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.94  E-value=1.6e-26  Score=219.00  Aligned_cols=155  Identities=29%  Similarity=0.432  Sum_probs=120.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...    ..++.++|++|+..+++ .||+
T Consensus        16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~   92 (236)
T cd03253          16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIG   92 (236)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHH
Confidence            7899999999999999999999999999999999987  467999999986532    34567999999988775 6999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       +++                  +||++||++|+.+|++++|||||+|||+.+
T Consensus        93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~  172 (236)
T cd03253          93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT  172 (236)
T ss_pred             HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            99976310             0       010                  189999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ...+.  +  +.+|.++..-+            |+...... ||+++.+.+|.....
T Consensus       173 ~~~l~~~l~~~~~~~tiii~s------------h~~~~~~~-~d~~~~l~~g~i~~~  216 (236)
T cd03253         173 EREIQAALRDVSKGRTTIVIA------------HRLSTIVN-ADKIIVLKDGRIVER  216 (236)
T ss_pred             HHHHHHHHHHhcCCCEEEEEc------------CCHHHHHh-CCEEEEEECCEEEee
Confidence            98873  1  22366554422            22222223 788888887766543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.94  E-value=3.4e-26  Score=219.96  Aligned_cols=156  Identities=27%  Similarity=0.398  Sum_probs=117.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-----cCh----h----ccccEEEEecCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-----LSR----T----VKRKTGFVAHSN   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-----~~~----~----~~~~~~~v~q~~   68 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+     ...    .    .++.++|++|+.
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~   98 (258)
T PRK11701         21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP   98 (258)
T ss_pred             eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence            6899999999999999999999999999999999987  467999999986     432    1    234699999996


Q ss_pred             --ccCCCCCHHHHHHHHH--------------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308           69 --VFYLHLTVTETLVFIA--------------------LFRLP---------------IKRVSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        69 --~~~~~lTv~e~l~f~~--------------------~~~~~---------------~krvsia~~l~~~p~llllDEP  111 (413)
                        .+.+.+|++|++.+..                    .+++.               +||++||++|+.+|++++||||
T Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP  178 (258)
T PRK11701         99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP  178 (258)
T ss_pred             ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence              3567788888875321                    11111               1899999999999999999999


Q ss_pred             CCCCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          112 ASGLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       112 tsgLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |+|||..++..+.     +..+ |.++..-+            |+.....+.+|+++.+.+|....
T Consensus       179 t~~LD~~~~~~l~~~l~~~~~~~~~tii~is------------H~~~~~~~~~d~i~~l~~g~i~~  232 (258)
T PRK11701        179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVT------------HDLAVARLLAHRLLVMKQGRVVE  232 (258)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence            9999999998883     1233 66555432            23333334567777777776543

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.94  E-value=9.9e-27  Score=253.27  Aligned_cols=159  Identities=26%  Similarity=0.427  Sum_probs=126.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.+++  .+|+|.+||.+.++    ..++.++||+|++.+|+ .|++
T Consensus       496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIr  572 (711)
T TIGR00958       496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVR  572 (711)
T ss_pred             cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHH
Confidence            79999999999999999999999999999999999984  67999999998753    45778999999998875 6999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+++++|++++||||||+||+.+
T Consensus       573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t  652 (711)
T TIGR00958       573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC  652 (711)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence            99987421             0       111                  289999999999999999999999999999


Q ss_pred             HHHHHH--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          120 AKQILL--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       120 ~~~i~l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      ...+.-  ..+|+++..            +.|.... ..-+|.++.+.+|++.+.++++
T Consensus       653 e~~i~~~~~~~~~TvIi------------ItHrl~~-i~~aD~IivL~~G~ive~Gt~~  698 (711)
T TIGR00958       653 EQLLQESRSRASRTVLL------------IAHRLST-VERADQILVLKKGSVVEMGTHK  698 (711)
T ss_pred             HHHHHHhhccCCCeEEE------------EeccHHH-HHhCCEEEEEECCEEEEeeCHH
Confidence            988852  224565544            2233322 2348888888888876655443

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.94  E-value=4e-26  Score=213.38  Aligned_cols=127  Identities=33%  Similarity=0.423  Sum_probs=105.5

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCCCCH
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      |+|+++++ |+++|+||||||||||+++|+|.++  +.+|+|.++|.+...        ..++.++|++|+..+++.+|+
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV   92 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence            99999999 9999999999999999999999987  467999999986531        234579999999999999999


Q ss_pred             HHHHHHHHHc-----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           77 TETLVFIALF-----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        77 ~e~l~f~~~~-----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      +|++.+....                 +++              +||+.||++|+.+|++++|||||+|||+.++..+. 
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~  172 (214)
T cd03297          93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP  172 (214)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            9999765321                 010              18999999999999999999999999999998883 


Q ss_pred             ----HhcC-CcEEEe
Q 048308          125 ----LNSE-GNSLHV  134 (413)
Q Consensus       125 ----ll~~-G~~v~~  134 (413)
                          +..+ |.++..
T Consensus       173 ~l~~~~~~~~~tiii  187 (214)
T cd03297         173 ELKQIKKNLNIPVIF  187 (214)
T ss_pred             HHHHHHHHcCcEEEE
Confidence                2233 765554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.3e-26  Score=220.96  Aligned_cols=122  Identities=22%  Similarity=0.375  Sum_probs=101.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+|+|+|+..+.   +.+|+|.++|.+..      ...++.++|++|+..+++
T Consensus        25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  104 (264)
T PRK14243         25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP  104 (264)
T ss_pred             EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence            689999999999999999999999999999999986521   26799999998652      133567999999988887


Q ss_pred             CCCHHHHHHHHHHc------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIALF------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~~------------------~~------------------~~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                       .||+||+.+....                  ++                  .+||++||++|+.+|++++|||||+|||
T Consensus       105 -~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD  183 (264)
T PRK14243        105 -KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD  183 (264)
T ss_pred             -ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence             4999999763210                  11                  0289999999999999999999999999


Q ss_pred             HHHHHHHH
Q 048308          117 STIAKQIL  124 (413)
Q Consensus       117 ~~~~~~i~  124 (413)
                      +.++..+.
T Consensus       184 ~~~~~~l~  191 (264)
T PRK14243        184 PISTLRIE  191 (264)
T ss_pred             HHHHHHHH
Confidence            99998883

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.94  E-value=2.5e-26  Score=222.84  Aligned_cols=159  Identities=26%  Similarity=0.398  Sum_probs=122.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC------CeeEEEEECCcccCh----hccccEEEEecCCccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG------ETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFY   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~------~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~   71 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++.      ..+|+|.++|.+...    ..++.++|++|+...+
T Consensus        16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~   95 (272)
T PRK13547         16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA   95 (272)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCC
Confidence            789999999999999999999999999999999998742      127999999987632    2345689999998766


Q ss_pred             CCCCHHHHHHHHHHc-----------------------CCc--------------hhHHHHHHHHh---------hCCCE
Q 048308           72 LHLTVTETLVFIALF-----------------------RLP--------------IKRVSRAQELL---------INPSL  105 (413)
Q Consensus        72 ~~lTv~e~l~f~~~~-----------------------~~~--------------~krvsia~~l~---------~~p~l  105 (413)
                      +.+||+||+.+....                       +++              +||++||++|+         .+|++
T Consensus        96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l  175 (272)
T PRK13547         96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY  175 (272)
T ss_pred             CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCE
Confidence            679999999764210                       010              18999999999         59999


Q ss_pred             EEEeCCCCCCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          106 LFLDEPASGLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       106 lllDEPtsgLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ++|||||+|||+.++..+.     +.++ |.++..-+            |+.....+.+|+++.+.+|+....
T Consensus       176 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiis------------H~~~~~~~~~d~i~~l~~G~i~~~  236 (272)
T PRK13547        176 LLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIV------------HDPNLAARHADRIAMLADGAIVAH  236 (272)
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEE------------CCHHHHHHhCCEEEEEECCeEEEe
Confidence            9999999999999999883     2334 77665532            333333456788888888876543

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.1e-26  Score=218.20  Aligned_cols=156  Identities=22%  Similarity=0.327  Sum_probs=117.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+..   +.+|+|.+||.+...      ..++.++|++|+..+++
T Consensus        18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14266         18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP   97 (250)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence            789999999999999999999999999999999986421   268999999987532      23567999999988887


Q ss_pred             CCCHHHHHHHHHHc--------------------CC------------------chhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RL------------------PIKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~------------------~~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      . |++||+.+....                    ++                  .+||++||++|+.+|++++|||||+|
T Consensus        98 ~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~g  176 (250)
T PRK14266         98 K-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA  176 (250)
T ss_pred             c-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence            5 999999764210                    11                  01899999999999999999999999


Q ss_pred             CCHHHHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          115 LDSTIAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       115 LD~~~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ||..++..+.  +  +.+|.++..-+            |+.+.....+|+++.+.+|...
T Consensus       177 LD~~~~~~l~~~l~~~~~~~tiii~s------------h~~~~~~~~~~~i~~l~~G~i~  224 (250)
T PRK14266        177 LDPISTTKIEDLIHKLKEDYTIVIVT------------HNMQQATRVSKYTSFFLNGEII  224 (250)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEEE------------CCHHHHHhhcCEEEEEECCeEE
Confidence            9999998883  1  13454444322            2333334456666666666543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.93  E-value=4.1e-26  Score=205.45  Aligned_cols=113  Identities=29%  Similarity=0.370  Sum_probs=98.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.       +.++|++|+..++ ..|++||+.
T Consensus        16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~nl~   85 (166)
T cd03223          16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------EDLLFLPQRPYLP-LGTLREQLI   85 (166)
T ss_pred             eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------ceEEEECCCCccc-cccHHHHhh
Confidence            7899999999999999999999999999999999987  46799999873       5699999998754 679999997


Q ss_pred             HHHHcCC---chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           82 FIALFRL---PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        82 f~~~~~~---~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +.....+   .+||+.+|++|+.+|++++|||||+|||..++..+.
T Consensus        86 ~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~  131 (166)
T cd03223          86 YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY  131 (166)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH
Confidence            6311112   248999999999999999999999999999999883

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=5.6e-26  Score=218.94  Aligned_cols=152  Identities=22%  Similarity=0.360  Sum_probs=117.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|..++.   ..+|+|.++|++..      ...++.++|++|+..+++
T Consensus        22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~  101 (261)
T PRK14258         22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP  101 (261)
T ss_pred             EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence            789999999999999999999999999999999998752   24799999998752      123567999999988887


Q ss_pred             CCCHHHHHHHHHH--------------------cCC--------c----------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIAL--------------------FRL--------P----------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~--------~----------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                       .|++||+.+...                    +++        .          +||+.||++|+.+|++++|||||+|
T Consensus       102 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~  180 (261)
T PRK14258        102 -MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG  180 (261)
T ss_pred             -ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence             899999976421                    111        0          1899999999999999999999999


Q ss_pred             CCHHHHHHHH--Hh----cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308          115 LDSTIAKQIL--LN----SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN  166 (413)
Q Consensus       115 LD~~~~~~i~--ll----~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~  166 (413)
                      ||..++..+.  +.    .+|.++..-+            |+.....+.+|+++.+.+
T Consensus       181 LD~~~~~~l~~~l~~l~~~~~~tiiivs------------H~~~~i~~~~d~i~~l~~  226 (261)
T PRK14258        181 LDPIASMKVESLIQSLRLRSELTMVIVS------------HNLHQVSRLSDFTAFFKG  226 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEE------------CCHHHHHHhcCEEEEEcc
Confidence            9999998873  21    2366655522            333333456777777776

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.93  E-value=1.9e-26  Score=216.16  Aligned_cols=120  Identities=28%  Similarity=0.488  Sum_probs=101.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...    ..++.++|++|+..+++ .||+
T Consensus        19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~   95 (220)
T cd03245          19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLR   95 (220)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHH
Confidence            7899999999999999999999999999999999986  467999999986532    23457999999988776 6999


Q ss_pred             HHHHHHH-------------HcCC-------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIA-------------LFRL-------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~-------------~~~~-------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      |++.+..             .+++       +                  +||+.||++|+.+|++++|||||+|||..+
T Consensus        96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~  175 (220)
T cd03245          96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS  175 (220)
T ss_pred             HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            9985421             0111       1                  289999999999999999999999999999


Q ss_pred             HHHHH
Q 048308          120 AKQIL  124 (413)
Q Consensus       120 ~~~i~  124 (413)
                      +..+.
T Consensus       176 ~~~l~  180 (220)
T cd03245         176 EERLK  180 (220)
T ss_pred             HHHHH
Confidence            99884

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.93  E-value=5.8e-26  Score=217.90  Aligned_cols=158  Identities=21%  Similarity=0.299  Sum_probs=118.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh--hccccEEEEecCCc--cCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR--TVKRKTGFVAHSNV--FYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~--~~~~lT   75 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..++.  +.+|+|.++|.++..  ..++.++|++|+..  +.+..|
T Consensus        18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~   97 (254)
T PRK10418         18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHT   97 (254)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcccc
Confidence            789999999999999999999999999999999998742  267999999987643  22356999999974  456678


Q ss_pred             HHHHHHHHH-----------------HcCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           76 VTETLVFIA-----------------LFRLP-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        76 v~e~l~f~~-----------------~~~~~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      +.+++.+.+                 .++++                 +||++||++|+.+|++++|||||+|||..++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~  177 (254)
T PRK10418         98 MHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQA  177 (254)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHH
Confidence            888765421                 11111                 18999999999999999999999999999998


Q ss_pred             HHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          122 QIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       122 ~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .+.     +..+ |.++..-+            |+.....+.+|+++.+.+|....
T Consensus       178 ~l~~~L~~~~~~~g~til~~s------------H~~~~~~~~~d~v~~l~~G~i~~  221 (254)
T PRK10418        178 RILDLLESIVQKRALGMLLVT------------HDMGVVARLADDVAVMSHGRIVE  221 (254)
T ss_pred             HHHHHHHHHHHhcCcEEEEEe------------cCHHHHHHhCCEEEEEECCEEEE
Confidence            873     2233 66655532            23333335567777777776543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.93  E-value=4.4e-26  Score=220.61  Aligned_cols=156  Identities=27%  Similarity=0.390  Sum_probs=119.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...       ..++.++|++|+.  .+.+
T Consensus        27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  104 (268)
T PRK10419         27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP  104 (268)
T ss_pred             eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence            7899999999999999999999999999999999987  468999999986532       2356799999997  4667


Q ss_pred             CCCHHHHHHHHHH--------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           73 HLTVTETLVFIAL--------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      ..|++|++.+...                    ++++               +||++||++|+.+|++++|||||+|||.
T Consensus       105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~  184 (268)
T PRK10419        105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL  184 (268)
T ss_pred             CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence            8899999854211                    1111               1899999999999999999999999999


Q ss_pred             HHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          118 TIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       118 ~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .++..+.     +.++ |.++..-+            |+.+...+.+|+++.+.+|....
T Consensus       185 ~~~~~~~~~l~~~~~~~~~tiiivs------------H~~~~i~~~~d~i~~l~~G~i~~  232 (268)
T PRK10419        185 VLQAGVIRLLKKLQQQFGTACLFIT------------HDLRLVERFCQRVMVMDNGQIVE  232 (268)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEE------------CCHHHHHHhCCEEEEEECCEEee
Confidence            9998873     2233 66555422            33333345577777777776543

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=5.8e-26  Score=225.78  Aligned_cols=159  Identities=19%  Similarity=0.265  Sum_probs=122.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccC------hhccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+.   .+.+|+|.++|.++.      ...++.++||+|+..++ 
T Consensus        97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-  175 (329)
T PRK14257         97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-  175 (329)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-
Confidence            79999999999999999999999999999999998752   135799999999874      13456799999998877 


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           73 HLTVTETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      +.|++||+.|....                    .+.                  +||++|||+|+.+|++++|||||+|
T Consensus       176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~  255 (329)
T PRK14257        176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA  255 (329)
T ss_pred             CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence            47999999864311                    110                  1899999999999999999999999


Q ss_pred             CCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          115 LDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       115 LD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      ||+.+...+.    -+.+++++..-            .|+.......+|+++.+.+|.+...+
T Consensus       256 LD~~~~~~i~~~i~~l~~~~Tii~i------------TH~l~~i~~~~Driivl~~G~i~e~g  306 (329)
T PRK14257        256 LDPIATAKIEELILELKKKYSIIIV------------THSMAQAQRISDETVFFYQGWIEEAG  306 (329)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEE------------eCCHHHHHHhCCEEEEEECCEEEEeC
Confidence            9999998872    12234554442            23333334457777777777654433

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.93  E-value=2.7e-26  Score=240.63  Aligned_cols=155  Identities=22%  Similarity=0.335  Sum_probs=123.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.++|.+...     ..++.++|++|+..+++.+||
T Consensus        19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   96 (501)
T PRK10762         19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI   96 (501)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence            78999999999999999999999999999999999874  67999999987532     124569999999999999999


Q ss_pred             HHHHHHHHHc-----------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           77 TETLVFIALF-----------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        77 ~e~l~f~~~~-----------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      +|++.+....                       +++              +||++||++|+.+|++++|||||+|||+.+
T Consensus        97 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  176 (501)
T PRK10762         97 AENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTE  176 (501)
T ss_pred             HHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence            9999764211                       010              189999999999999999999999999999


Q ss_pred             HHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          120 AKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       120 ~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +..+.     +.++|.++..            ..|+.+...+.||+++.+.+|+..
T Consensus       177 ~~~l~~~l~~l~~~~~tvii------------~sHd~~~~~~~~d~i~~l~~G~i~  220 (501)
T PRK10762        177 TESLFRVIRELKSQGRGIVY------------ISHRLKEIFEICDDVTVFRDGQFI  220 (501)
T ss_pred             HHHHHHHHHHHHHCCCEEEE------------EeCCHHHHHHhCCEEEEEeCCEEE
Confidence            99883     2234655544            234444445667777777777654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.1e-26  Score=218.30  Aligned_cols=157  Identities=24%  Similarity=0.365  Sum_probs=116.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCC----eeEEEEECCcccC----hhccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGE----TRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~----~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~   73 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|..++..    ..|++.++|.+..    ...++.++|++|+..+++.
T Consensus        25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~  104 (257)
T PRK14246         25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH  104 (257)
T ss_pred             eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCC
Confidence            6899999999999999999999999999999999986421    2366666665542    1345679999999999999


Q ss_pred             CCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           74 LTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        74 lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      +|++||+.+...                    +++.                  +||++||++|+.+|++++|||||+||
T Consensus       105 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~L  184 (257)
T PRK14246        105 LSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMI  184 (257)
T ss_pred             CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccC
Confidence            999999986522                    1111                  18999999999999999999999999


Q ss_pred             CHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          116 DSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       116 D~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      |..++..+.    -+.++.++..-+            |+.....+.+|+++.+.+|+..
T Consensus       185 D~~~~~~l~~~l~~~~~~~tiilvs------------h~~~~~~~~~d~v~~l~~g~i~  231 (257)
T PRK14246        185 DIVNSQAIEKLITELKNEIAIVIVS------------HNPQQVARVADYVAFLYNGELV  231 (257)
T ss_pred             CHHHHHHHHHHHHHHhcCcEEEEEE------------CCHHHHHHhCCEEEEEECCEEE
Confidence            999998873    123445544422            2222223445666666666543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.93  E-value=2.8e-26  Score=240.96  Aligned_cols=155  Identities=23%  Similarity=0.382  Sum_probs=121.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    . .++.++|++|+..+++.+||
T Consensus        26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  103 (510)
T PRK15439         26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV  103 (510)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence            7899999999999999999999999999999999987  467999999987532    1 23469999999999999999


Q ss_pred             HHHHHHHHH---------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308           77 TETLVFIAL---------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---  124 (413)
Q Consensus        77 ~e~l~f~~~---------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---  124 (413)
                      +|++.+...               ++++              +||+.||++|+.+|++++|||||+|||+.++..+.   
T Consensus       104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l  183 (510)
T PRK15439        104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI  183 (510)
T ss_pred             HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            999976321               1111              28999999999999999999999999999998883   


Q ss_pred             --HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          125 --LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       125 --ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                        +..+|.++..-+            |+.....+.||+++.+.+|...
T Consensus       184 ~~~~~~g~tiiivt------------Hd~~~~~~~~d~i~~l~~G~i~  219 (510)
T PRK15439        184 RELLAQGVGIVFIS------------HKLPEIRQLADRISVMRDGTIA  219 (510)
T ss_pred             HHHHHCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence              223566554422            3333333456777767666654

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.6e-26  Score=225.65  Aligned_cols=122  Identities=21%  Similarity=0.307  Sum_probs=101.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh----h----ccccEEEEecCCc--
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR----T----VKRKTGFVAHSNV--   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~--   69 (413)
                      +|+|||+++++||+++|+|+||||||||+++|+|++++.  ..+|+|.++|.++..    .    .++.++||+|+..  
T Consensus        22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~  101 (330)
T PRK15093         22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC  101 (330)
T ss_pred             EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchh
Confidence            789999999999999999999999999999999998631  467999999987532    1    1346999999975  


Q ss_pred             cCCCCCHHHHHHHHHH-------------------------cCCc-----------------hhHHHHHHHHhhCCCEEE
Q 048308           70 FYLHLTVTETLVFIAL-------------------------FRLP-----------------IKRVSRAQELLINPSLLF  107 (413)
Q Consensus        70 ~~~~lTv~e~l~f~~~-------------------------~~~~-----------------~krvsia~~l~~~p~lll  107 (413)
                      +.+.+||.+++.....                         ++++                 +||+.||++|+.+|++|+
T Consensus       102 l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli  181 (330)
T PRK15093        102 LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI  181 (330)
T ss_pred             cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE
Confidence            6788999988864210                         1111                 189999999999999999


Q ss_pred             EeCCCCCCCHHHHHHH
Q 048308          108 LDEPASGLDSTIAKQI  123 (413)
Q Consensus       108 lDEPtsgLD~~~~~~i  123 (413)
                      +||||+|||+.++.++
T Consensus       182 lDEPts~LD~~~~~~i  197 (330)
T PRK15093        182 ADEPTNAMEPTTQAQI  197 (330)
T ss_pred             EeCCCCcCCHHHHHHH
Confidence            9999999999999888

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.93  E-value=1.4e-26  Score=251.69  Aligned_cols=158  Identities=27%  Similarity=0.406  Sum_probs=125.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+|+||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|++.+|+ .|++
T Consensus       480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~  556 (694)
T TIGR03375       480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLR  556 (694)
T ss_pred             ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHH
Confidence            7999999999999999999999999999999999998  467999999988753    46788999999999886 5999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++||||||+||+.+
T Consensus       557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t  636 (694)
T TIGR03375       557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS  636 (694)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence            99986421             0       111                  289999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      ..++.  +  +.+|+++..=            .|.... ...||.++.+.+|+..+.++.
T Consensus       637 e~~i~~~l~~~~~~~T~iiI------------tHrl~~-~~~~D~iivl~~G~i~e~G~~  683 (694)
T TIGR03375       637 EERFKDRLKRWLAGKTLVLV------------THRTSL-LDLVDRIIVMDNGRIVADGPK  683 (694)
T ss_pred             HHHHHHHHHHHhCCCEEEEE------------ecCHHH-HHhCCEEEEEeCCEEEeeCCH
Confidence            99883  2  2345655442            223221 244778888888876655443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=5.4e-27  Score=206.07  Aligned_cols=152  Identities=28%  Similarity=0.453  Sum_probs=122.9

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +||+++|+.+++||..+|.||||||||||+|+++.+..  +.+|.+++.|++.+    +.++.+++|+.|.+.+|+. ||
T Consensus        17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV   93 (223)
T COG4619          17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV   93 (223)
T ss_pred             eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence            48999999999999999999999999999999999987  57899999999875    3678889999999999976 99


Q ss_pred             HHHHHHHHHcCC-----------------c---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           77 TETLVFIALFRL-----------------P---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        77 ~e~l~f~~~~~~-----------------~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      ++||.|..+.+-                 |               +||.+|+|.|...|++|+||||||.||..++.+|-
T Consensus        94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie  173 (223)
T COG4619          94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE  173 (223)
T ss_pred             hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHH
Confidence            999988654432                 1               28999999999999999999999999999999882


Q ss_pred             --Hh----cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCC
Q 048308          125 --LN----SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANG  167 (413)
Q Consensus       125 --ll----~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~  167 (413)
                        ++    .+...+.-            +.|+..+..+.||.++-+..|
T Consensus       174 ~mi~~~v~~q~vAv~W------------iTHd~dqa~rha~k~itl~~G  210 (223)
T COG4619         174 EMIHRYVREQNVAVLW------------ITHDKDQAIRHADKVITLQPG  210 (223)
T ss_pred             HHHHHHhhhhceEEEE------------EecChHHHhhhhheEEEeccC
Confidence              11    12211111            345655556667777666554

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.93  E-value=5.2e-26  Score=214.41  Aligned_cols=130  Identities=28%  Similarity=0.400  Sum_probs=107.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...    ..++.++|++|+..+++ .|++
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~   98 (225)
T PRK10247         22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVY   98 (225)
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHH
Confidence            7899999999999999999999999999999999986  467999999986532    23567999999988886 4999


Q ss_pred             HHHHHHHHc-----------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           78 ETLVFIALF-----------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        78 e~l~f~~~~-----------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      ||+.+....                 ++.               +||++||++|+.+|++++|||||+|||+.++..+. 
T Consensus        99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  178 (225)
T PRK10247         99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE  178 (225)
T ss_pred             HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            999764211                 111               18999999999999999999999999999998874 


Q ss_pred             ----Hhc-CCcEEEe
Q 048308          125 ----LNS-EGNSLHV  134 (413)
Q Consensus       125 ----ll~-~G~~v~~  134 (413)
                          +.+ .|.++..
T Consensus       179 ~l~~~~~~~~~tvii  193 (225)
T PRK10247        179 IIHRYVREQNIAVLW  193 (225)
T ss_pred             HHHHHHHhcCCEEEE
Confidence                223 3665544

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.2e-26  Score=235.47  Aligned_cols=119  Identities=30%  Similarity=0.458  Sum_probs=105.0

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +||+++||++++||-+||+|+|||||||++|+|-+.++   .+|+|.+||+++++    ..|+.+||||||..+|. -||
T Consensus       366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTI  441 (591)
T KOG0057|consen  366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTI  441 (591)
T ss_pred             ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhH
Confidence            48999999999999999999999999999999999885   68999999998753    56778999999988885 599


Q ss_pred             HHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      .+|+.+...                    .++|                  +||+++||++++||+++++|||||.||+.
T Consensus       442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~  521 (591)
T KOG0057|consen  442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE  521 (591)
T ss_pred             HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchh
Confidence            999987521                    1122                  28999999999999999999999999999


Q ss_pred             HHHHH
Q 048308          119 IAKQI  123 (413)
Q Consensus       119 ~~~~i  123 (413)
                      +..++
T Consensus       522 TE~~i  526 (591)
T KOG0057|consen  522 TEREI  526 (591)
T ss_pred             hHHHH
Confidence            99988

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.93  E-value=3.5e-26  Score=241.12  Aligned_cols=130  Identities=32%  Similarity=0.506  Sum_probs=109.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+   ..++.++||+|++.+|+. |++|
T Consensus       350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~e  426 (529)
T TIGR02868       350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRD  426 (529)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHH
Confidence            7999999999999999999999999999999999997  477999999987653   456789999999998855 9999


Q ss_pred             HHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           79 TLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        79 ~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |+.+...             .       ++|                  +||++|||+|+.+|++++||||||+||+.+.
T Consensus       427 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te  506 (529)
T TIGR02868       427 NLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE  506 (529)
T ss_pred             HHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            9987410             0       111                  2899999999999999999999999999999


Q ss_pred             HHHH--Hh--cCCcEEEe
Q 048308          121 KQIL--LN--SEGNSLHV  134 (413)
Q Consensus       121 ~~i~--ll--~~G~~v~~  134 (413)
                      .++.  +.  .+|+++..
T Consensus       507 ~~I~~~l~~~~~~~TvIi  524 (529)
T TIGR02868       507 SELLEDLLAALSGKTVVV  524 (529)
T ss_pred             HHHHHHHHHhcCCCEEEE
Confidence            9984  32  34665543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=8e-26  Score=218.26  Aligned_cols=157  Identities=21%  Similarity=0.250  Sum_probs=119.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC--------hhccccEEEEecCCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS--------RTVKRKTGFVAHSNVF   70 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~~~   70 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|..++.   ..+|+|.++|.+..        ...++.++|++|+..+
T Consensus        31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~  110 (265)
T PRK14252         31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNP  110 (265)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcC
Confidence            789999999999999999999999999999999997642   26899999987542        1235679999999888


Q ss_pred             CCCCCHHHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308           71 YLHLTVTETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPA  112 (413)
Q Consensus        71 ~~~lTv~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPt  112 (413)
                      ++. ||+||+.+...                    +++.                  +||+.||++|+.+|++++|||||
T Consensus       111 ~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  189 (265)
T PRK14252        111 FPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT  189 (265)
T ss_pred             Ccc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            875 99999976421                    1110                  18999999999999999999999


Q ss_pred             CCCCHHHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          113 SGLDSTIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       113 sgLD~~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +|||..++..+.    -++++.++..-            .|+.+.....+|+++.+.+|....
T Consensus       190 ~gLD~~~~~~l~~~l~~l~~~~tiiiv------------th~~~~~~~~~d~i~~l~~G~i~~  240 (265)
T PRK14252        190 SALDPIATASIEELISDLKNKVTILIV------------THNMQQAARVSDYTAYMYMGELIE  240 (265)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCEEEEE------------ecCHHHHHHhCCEEEEEECCEEEE
Confidence            999999998873    11334444432            233333335577777777776543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.93  E-value=1.8e-26  Score=214.11  Aligned_cols=121  Identities=27%  Similarity=0.455  Sum_probs=101.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|         .++|++|+..++ ..|++||+.
T Consensus        20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g---------~i~~~~q~~~l~-~~t~~enl~   87 (204)
T cd03250          20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG---------SIAYVSQEPWIQ-NGTIRENIL   87 (204)
T ss_pred             eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC---------EEEEEecCchhc-cCcHHHHhc
Confidence            7999999999999999999999999999999999987  4679999998         599999998877 569999997


Q ss_pred             HHHH------------cCC-------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           82 FIAL------------FRL-------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        82 f~~~------------~~~-------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +...            +++       +                  +||+.||++|+.+|+++++||||+|||+.++..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~  167 (204)
T cd03250          88 FGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF  167 (204)
T ss_pred             cCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence            6310            010       0                  18999999999999999999999999999988763


Q ss_pred             --Hh----cCCcEEEe
Q 048308          125 --LN----SEGNSLHV  134 (413)
Q Consensus       125 --ll----~~G~~v~~  134 (413)
                        ++    .+|.++-.
T Consensus       168 ~~ll~~~~~~~~tvi~  183 (204)
T cd03250         168 ENCILGLLLNNKTRIL  183 (204)
T ss_pred             HHHHHHhccCCCEEEE
Confidence              22    34666555

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.4e-26  Score=238.26  Aligned_cols=155  Identities=25%  Similarity=0.324  Sum_probs=120.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...     ..++.++||+|+..+++.+||
T Consensus        20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv   97 (510)
T PRK09700         20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV   97 (510)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence            7899999999999999999999999999999999987  467999999987642     123569999999999999999


Q ss_pred             HHHHHHHHH--------------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           77 TETLVFIAL--------------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        77 ~e~l~f~~~--------------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      +|++.+...                          +++.              +||+.||++|+.+|++++|||||+|||
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD  177 (510)
T PRK09700         98 LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT  177 (510)
T ss_pred             HHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence            999976321                          0110              189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          117 STIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       117 ~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +.++..+.     +-++|.++..-+            |+.....+.||+++.+.+|+..
T Consensus       178 ~~~~~~l~~~l~~l~~~g~tiiivs------------Hd~~~~~~~~d~v~~l~~G~i~  224 (510)
T PRK09700        178 NKEVDYLFLIMNQLRKEGTAIVYIS------------HKLAEIRRICDRYTVMKDGSSV  224 (510)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEe
Confidence            99998883     223466554422            3333334556666666666543

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.93  E-value=3.6e-26  Score=221.86  Aligned_cols=156  Identities=22%  Similarity=0.295  Sum_probs=120.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+.+++||+++|+|+||||||||+++|+|.++   .+|+|.++|.+...    ..++.++|++|++.+++ .|++
T Consensus        19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~   94 (275)
T cd03289          19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFR   94 (275)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hhHH
Confidence            7999999999999999999999999999999999985   46999999987632    34567999999999887 4999


Q ss_pred             HHHHHHH------------HcCC-------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIA------------LFRL-------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~------------~~~~-------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+....            .+++       |                  +||+.|||+|+.+|++++|||||+|||+.+.
T Consensus        95 ~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~  174 (275)
T cd03289          95 KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY  174 (275)
T ss_pred             HHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence            9996321            1111       1                  2899999999999999999999999999999


Q ss_pred             HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      ..+.  +  +.+|+++..-+            |+...... +|+++.+.+|.+...++
T Consensus       175 ~~l~~~l~~~~~~~tii~is------------H~~~~i~~-~dri~vl~~G~i~~~g~  219 (275)
T cd03289         175 QVIRKTLKQAFADCTVILSE------------HRIEAMLE-CQRFLVIEENKVRQYDS  219 (275)
T ss_pred             HHHHHHHHHhcCCCEEEEEE------------CCHHHHHh-CCEEEEecCCeEeecCC
Confidence            8762  1  23465554422            33322223 77777777776654443

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.93  E-value=8.2e-26  Score=236.88  Aligned_cols=157  Identities=25%  Similarity=0.314  Sum_probs=122.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++++.+|+|.++|++...     ..++.++||+|+..+++.+||
T Consensus        16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   95 (500)
T TIGR02633        16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSV   95 (500)
T ss_pred             eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcH
Confidence            789999999999999999999999999999999998643358999999987642     124569999999989999999


Q ss_pred             HHHHHHHHHc-----------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIALF-----------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~~-----------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +|++.+....                       +++               +||++||++|+.+|++++|||||+|||+.
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~  175 (500)
T TIGR02633        96 AENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEK  175 (500)
T ss_pred             HHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence            9999764211                       000               18999999999999999999999999999


Q ss_pred             HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ++..+.     +.++|.++..-+            |+.....+.||+++.+.+|+..
T Consensus       176 ~~~~l~~~l~~l~~~g~tviiit------------Hd~~~~~~~~d~i~~l~~G~i~  220 (500)
T TIGR02633       176 ETEILLDIIRDLKAHGVACVYIS------------HKLNEVKAVCDTICVIRDGQHV  220 (500)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEe------------CcHHHHHHhCCEEEEEeCCeEe
Confidence            999883     224566554422            3333334556667766666543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.93  E-value=3.4e-26  Score=243.56  Aligned_cols=159  Identities=27%  Similarity=0.428  Sum_probs=126.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|+..+|+ -|++
T Consensus       355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~  431 (574)
T PRK11160        355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLR  431 (574)
T ss_pred             ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHH
Confidence            7999999999999999999999999999999999987  467999999988653    46778999999998886 5999


Q ss_pred             HHHHHHH-------------HcCC------c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIA-------------LFRL------P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~-------------~~~~------~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ||+.+..             ..++      |                  +||++|||+|+.+|++++||||||+||+.++
T Consensus       432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~  511 (574)
T PRK11160        432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE  511 (574)
T ss_pred             HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            9998641             0000      2                  2899999999999999999999999999999


Q ss_pred             HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      ..+.  +  +.+|+++..=            .|..... ..+|.++.+.+|++.+.++.+
T Consensus       512 ~~i~~~l~~~~~~~tviii------------tHr~~~~-~~~d~i~~l~~G~i~~~g~~~  558 (574)
T PRK11160        512 RQILELLAEHAQNKTVLMI------------THRLTGL-EQFDRICVMDNGQIIEQGTHQ  558 (574)
T ss_pred             HHHHHHHHHHcCCCEEEEE------------ecChhHH-HhCCEEEEEeCCeEEEeCCHH
Confidence            9884  2  2356665542            2333222 348888888888876655443

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.2e-26  Score=208.17  Aligned_cols=175  Identities=30%  Similarity=0.409  Sum_probs=132.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|++||+.++|||+++|+||||||||||||+|+|.+.  +.+|++.+||.+.+.    ...+..+..+|+..+-...||
T Consensus        15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv   92 (259)
T COG4559          15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV   92 (259)
T ss_pred             eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence            47899999999999999999999999999999999887  467999999998753    345678899999988777899


Q ss_pred             HHHHHHHHHcC----C-------------------------------chhHHHHHHHHhh------CCCEEEEeCCCCCC
Q 048308           77 TETLVFIALFR----L-------------------------------PIKRVSRAQELLI------NPSLLFLDEPASGL  115 (413)
Q Consensus        77 ~e~l~f~~~~~----~-------------------------------~~krvsia~~l~~------~p~llllDEPtsgL  115 (413)
                      +|-+.+...-.    .                               .+|||.+||.|+.      ++++||||||||.|
T Consensus        93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL  172 (259)
T COG4559          93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL  172 (259)
T ss_pred             HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence            99998754211    0                               1289999999984      44599999999999


Q ss_pred             CHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHHH
Q 048308          116 DSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYK  189 (413)
Q Consensus       116 D~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (413)
                      |...+..++     +-++|--|-.            +=|+.....-.||.++-+.+|++...+++...-..+.+...|.
T Consensus       173 Di~HQ~~tl~laR~la~~g~~V~~------------VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg  239 (259)
T COG4559         173 DIAHQHHTLRLARQLAREGGAVLA------------VLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYG  239 (259)
T ss_pred             chHHHHHHHHHHHHHHhcCCcEEE------------EEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhC
Confidence            999998874     3334422111            2245445556688888888888776666555444555555554

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.93  E-value=9.5e-26  Score=211.12  Aligned_cols=149  Identities=21%  Similarity=0.214  Sum_probs=113.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE-ECCcccChhccccEEEEecCCccCCCCCHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID-YNNNPLSRTVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      ++|+|||+++++||+++|+||||||||||+|+|+|..+  +.+|+|. ++|...         .+.++..+++.+|++||
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en   69 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN   69 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence            47999999999999999999999999999999999987  4679996 776432         12345667889999999


Q ss_pred             HHHHHHc-CC---------------c--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc
Q 048308           80 LVFIALF-RL---------------P--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS  127 (413)
Q Consensus        80 l~f~~~~-~~---------------~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~  127 (413)
                      +.+.... +.               +              +||+++|++|+.+|++++|||||+++|+.++..+.  +..
T Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~  149 (213)
T PRK15177         70 ARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALAC  149 (213)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence            9875431 11               0              18999999999999999999999999999988774  211


Q ss_pred             --CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          128 --EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       128 --~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                        +++.+..            ..|+.......||+++.+.+|+....
T Consensus       150 ~~~~~~ii~------------vsH~~~~~~~~~d~i~~l~~G~i~~~  184 (213)
T PRK15177        150 QLQQKGLIV------------LTHNPRLIKEHCHAFGVLLHGKITMC  184 (213)
T ss_pred             HhhCCcEEE------------EECCHHHHHHhcCeeEEEECCeEEEe
Confidence              2333222            23444444566888888888876543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.93  E-value=1.1e-25  Score=215.54  Aligned_cols=156  Identities=26%  Similarity=0.384  Sum_probs=115.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-----cCh----h----ccccEEEEecCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-----LSR----T----VKRKTGFVAHSN   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-----~~~----~----~~~~~~~v~q~~   68 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+     ...    .    .++.++|++|++
T Consensus        18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (253)
T TIGR02323        18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP   95 (253)
T ss_pred             EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence            6899999999999999999999999999999999987  467999999875     321    1    134689999986


Q ss_pred             c--cCCCCCHHHHHHHHH--------------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308           69 V--FYLHLTVTETLVFIA--------------------LFRLP---------------IKRVSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        69 ~--~~~~lTv~e~l~f~~--------------------~~~~~---------------~krvsia~~l~~~p~llllDEP  111 (413)
                      .  +.+.+|+.|++.+..                    .+++.               +||++||++|+.+|++++||||
T Consensus        96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP  175 (253)
T TIGR02323        96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP  175 (253)
T ss_pred             ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            4  455678888874311                    11111               1899999999999999999999


Q ss_pred             CCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          112 ASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       112 tsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |+|||+.++..+.     +.. .|.++-.-+            |+.+.....+|+++.+.+|....
T Consensus       176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vs------------H~~~~~~~~~d~~~~l~~G~i~~  229 (253)
T TIGR02323       176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVT------------HDLGVARLLAQRLLVMQQGRVVE  229 (253)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHHhcCEEEEEECCEEEE
Confidence            9999999998883     223 265554422            22222234567777777766543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=2.2e-26  Score=220.01  Aligned_cols=137  Identities=28%  Similarity=0.423  Sum_probs=120.1

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------hhccccEEEEecCCccCCCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------RTVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~~~~~~l   74 (413)
                      ++|+|++++.|||..|||-||||||||+++++++.+  +..|+|+++|.++.        +..+++++.|+|...++|+.
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr  121 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR  121 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence            689999999999999999999999999999999987  47899999998753        13456799999999999999


Q ss_pred             CHHHHHHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||.||..|...++. |                                +|||.+||||+++|++|++|||+|.||+-.+.
T Consensus       122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~  201 (386)
T COG4175         122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT  201 (386)
T ss_pred             hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence            99999999754421 1                                18999999999999999999999999998775


Q ss_pred             HH--------------------------------HHhcCCcEEEecCcchHh
Q 048308          122 QI--------------------------------LLNSEGNSLHVGKGDGVM  141 (413)
Q Consensus       122 ~i--------------------------------~ll~~G~~v~~G~~~~~~  141 (413)
                      ++                                .+|++|++|-.|++++++
T Consensus       202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl  253 (386)
T COG4175         202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL  253 (386)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence            55                                488999999999998874

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.93  E-value=3.4e-26  Score=219.97  Aligned_cols=157  Identities=17%  Similarity=0.295  Sum_probs=120.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||+++|+|+||||||||+|+|+|+++  +.+|+|.++|.+..+    ..++.++|++|+..+++ .|++
T Consensus        36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~  112 (257)
T cd03288          36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIR  112 (257)
T ss_pred             ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHH
Confidence            7899999999999999999999999999999999987  467999999987642    34567999999987776 4888


Q ss_pred             HHHHHHH------------HcC-------C------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIA------------LFR-------L------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~------------~~~-------~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |++....            ..+       +                  .+||+.||++|+.+|++++|||||+|||+.++
T Consensus       113 ~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~  192 (257)
T cd03288         113 FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE  192 (257)
T ss_pred             HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            8874310            000       1                  02899999999999999999999999999999


Q ss_pred             HHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          121 KQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       121 ~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      ..+.  +  +.+|.++..            ..|+.+.... +|+++.+.+|++...++
T Consensus       193 ~~l~~~l~~~~~~~tiii------------~sh~~~~~~~-~dri~~l~~G~i~~~g~  237 (257)
T cd03288         193 NILQKVVMTAFADRTVVT------------IAHRVSTILD-ADLVLVLSRGILVECDT  237 (257)
T ss_pred             HHHHHHHHHhcCCCEEEE------------EecChHHHHh-CCEEEEEECCEEEEeCC
Confidence            8773  1  234555544            2344433333 88888888887654433

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=2.2e-26  Score=252.40  Aligned_cols=139  Identities=29%  Similarity=0.503  Sum_probs=119.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +||+|+|+.+++||.+||+|||||||||+++.|.+.++  +.+|+|.++|.++.+    ..+.++|.|.|++.+| ..|+
T Consensus       367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI  443 (1228)
T KOG0055|consen  367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTI  443 (1228)
T ss_pred             hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhh-cccH
Confidence            48999999999999999999999999999999999998  578999999998753    5677899999999877 5799


Q ss_pred             HHHHHHHH------------H--------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIA------------L--------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~------------~--------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||+.|..            +        ..+|                  +||++|||+|+.||++|+||||||+||+.
T Consensus       444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~  523 (1228)
T KOG0055|consen  444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE  523 (1228)
T ss_pred             HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH
Confidence            99998742            0        0111                  28999999999999999999999999999


Q ss_pred             HHHHH-----------------------------HHhcCCcEEEecCcchHhH
Q 048308          119 IAKQI-----------------------------LLNSEGNSLHVGKGDGVMS  142 (413)
Q Consensus       119 ~~~~i-----------------------------~ll~~G~~v~~G~~~~~~~  142 (413)
                      +...|                             +++.+|++|..|+++|...
T Consensus       524 se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~  576 (1228)
T KOG0055|consen  524 SERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA  576 (1228)
T ss_pred             HHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence            99876                             4777888888888777654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.93  E-value=3.4e-26  Score=243.25  Aligned_cols=161  Identities=30%  Similarity=0.421  Sum_probs=131.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|++++|||.+||+||||||||||+|.|.|.+++  .+|+|.+||.++.+    ..++.+++|+|+..+|. -||
T Consensus       343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI  419 (567)
T COG1132         343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTI  419 (567)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccH
Confidence            379999999999999999999999999999999999974  68999999988753    56788999999999987 799


Q ss_pred             HHHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||+.++..                    .++|                  +||++|||+++.+|++++||||||+||+.
T Consensus       420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~  499 (567)
T COG1132         420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE  499 (567)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence            999988621                    0122                  28999999999999999999999999999


Q ss_pred             HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308          119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ  177 (413)
Q Consensus       119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~  177 (413)
                      +...+.  +  +.+|+++..            +-|......+ ||.++.+.+|++.+.+++++
T Consensus       500 tE~~I~~~l~~l~~~rT~ii------------IaHRlsti~~-aD~IiVl~~G~i~e~G~h~e  549 (567)
T COG1132         500 TEALIQDALKKLLKGRTTLI------------IAHRLSTIKN-ADRIIVLDNGRIVERGTHEE  549 (567)
T ss_pred             hHHHHHHHHHHHhcCCEEEE------------EeccHhHHHh-CCEEEEEECCEEEEecCHHH
Confidence            998883  2  346775544            2344433345 99999999998766655444

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.93  E-value=8.6e-26  Score=236.24  Aligned_cols=156  Identities=17%  Similarity=0.265  Sum_probs=123.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|++...     ..++.++|++|+..+++.+||
T Consensus        13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   90 (491)
T PRK10982         13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV   90 (491)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence            7899999999999999999999999999999999987  467999999987632     234579999999988999999


Q ss_pred             HHHHHHHHH----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           77 TETLVFIAL----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        77 ~e~l~f~~~----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +|++.+...                      +++.              +||+.||++|+.+|++++|||||+|||+.++
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~  170 (491)
T PRK10982         91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV  170 (491)
T ss_pred             HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence            999976421                      0110              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ..+.     +.++|.++..-            .|+.+...+.||+++.+.+|+...
T Consensus       171 ~~l~~~l~~l~~~g~tvii~------------tH~~~~~~~~~d~i~~l~~G~i~~  214 (491)
T PRK10982        171 NHLFTIIRKLKERGCGIVYI------------SHKMEEIFQLCDEITILRDGQWIA  214 (491)
T ss_pred             HHHHHHHHHHHhCCCEEEEE------------ecCHHHHHHhCCEEEEEECCEEEe
Confidence            9883     22356655442            234434445677777777776544

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.93  E-value=8.8e-26  Score=199.05  Aligned_cols=155  Identities=34%  Similarity=0.472  Sum_probs=123.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---h-----hccccEEEEecCCccCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---R-----TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~~~~~   72 (413)
                      .||++|++.+++||-++|+|||||||||||-+++|+..  +.+|+|.+-|++..   +     ...+.+|+|+|...+.|
T Consensus        24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip  101 (228)
T COG4181          24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP  101 (228)
T ss_pred             eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccc
Confidence            38999999999999999999999999999999999987  47799999999863   1     23457999999999999


Q ss_pred             CCCHHHHHHHHHHcCCc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           73 HLTVTETLVFIALFRLP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        73 ~lTv~e~l~f~~~~~~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      +||..||+...+.++-.                                 .|||+|||+++..|++||.||||-+||..+
T Consensus       102 ~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T  181 (228)
T COG4181         102 NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT  181 (228)
T ss_pred             cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH
Confidence            99999999876554321                                 189999999999999999999999999999


Q ss_pred             HHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          120 AKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       120 ~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ..+|.     +.. .|.+.-.-+            |++. --.-||..+.+.+|+..
T Consensus       182 g~~iaDLlF~lnre~G~TlVlVT------------HD~~-LA~Rc~R~~r~~~G~l~  225 (228)
T COG4181         182 GDKIADLLFALNRERGTTLVLVT------------HDPQ-LAARCDRQLRLRSGRLV  225 (228)
T ss_pred             HHHHHHHHHHHhhhcCceEEEEe------------CCHH-HHHhhhheeeeecceec
Confidence            99983     112 366554433            2211 12336666666666554

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.93  E-value=4.2e-26  Score=233.32  Aligned_cols=158  Identities=25%  Similarity=0.375  Sum_probs=131.9

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lT   75 (413)
                      ++|+|||++++|||+++|+|.||||||||+|+|+|.++  +.+|+|.++|++..     +.....+..|.|+..+.|+||
T Consensus        22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~Ls   99 (500)
T COG1129          22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS   99 (500)
T ss_pred             eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCcc
Confidence            47999999999999999999999999999999999998  57899999999764     234557999999999999999


Q ss_pred             HHHHHHHHHHcC-----------------------C---c-----------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           76 VTETLVFIALFR-----------------------L---P-----------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        76 v~e~l~f~~~~~-----------------------~---~-----------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      |-||+.+....+                       .   |           +|-|.||+||..++++++|||||+.|+..
T Consensus       100 VaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~  179 (500)
T COG1129         100 VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK  179 (500)
T ss_pred             HHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            999996543211                       1   1           17899999999999999999999999999


Q ss_pred             HHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          119 IAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       119 ~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      .+.++.     +-++|..+-+            +.|..++....||.++.+.+|+..++
T Consensus       180 E~~~Lf~~ir~Lk~~Gv~ii~------------ISHrl~Ei~~i~DritVlRDG~~v~~  226 (500)
T COG1129         180 ETERLFDLIRRLKAQGVAIIY------------ISHRLDEVFEIADRITVLRDGRVVGT  226 (500)
T ss_pred             HHHHHHHHHHHHHhCCCEEEE------------EcCcHHHHHHhcCEEEEEeCCEEeee
Confidence            998883     5567876555            34666667788999999988876543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.93  E-value=3.6e-26  Score=215.32  Aligned_cols=120  Identities=27%  Similarity=0.461  Sum_probs=102.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|+..+++ .||+
T Consensus        29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~  105 (226)
T cd03248          29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQ  105 (226)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHH
Confidence            7999999999999999999999999999999999987  467999999986532    33567999999987775 5999


Q ss_pred             HHHHHHHH----------------------c--CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL----------------------F--RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~----------------------~--~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...                      +  ++.              +||+.||++|+.+|++++|||||+|||+.+
T Consensus       106 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~  185 (226)
T cd03248         106 DNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES  185 (226)
T ss_pred             HHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            99975310                      0  111              189999999999999999999999999999


Q ss_pred             HHHHH
Q 048308          120 AKQIL  124 (413)
Q Consensus       120 ~~~i~  124 (413)
                      +..+.
T Consensus       186 ~~~l~  190 (226)
T cd03248         186 EQQVQ  190 (226)
T ss_pred             HHHHH
Confidence            99883

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.2e-25  Score=219.65  Aligned_cols=122  Identities=25%  Similarity=0.404  Sum_probs=102.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEEEECCcccCh------hccccEEEEecCCccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST---GETRGNIDYNNNPLSR------TVKRKTGFVAHSNVFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g~~~~~------~~~~~~~~v~q~~~~~~   72 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|.+++   .+.+|+|.++|.+...      ..++.++|++|+..+++
T Consensus        60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  139 (305)
T PRK14264         60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP  139 (305)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc
Confidence            78999999999999999999999999999999999752   1468999999986532      23567999999988777


Q ss_pred             CCCHHHHHHHHHH--------------------------------cCCc------------------hhHHHHHHHHhhC
Q 048308           73 HLTVTETLVFIAL--------------------------------FRLP------------------IKRVSRAQELLIN  102 (413)
Q Consensus        73 ~lTv~e~l~f~~~--------------------------------~~~~------------------~krvsia~~l~~~  102 (413)
                       .||+||+.+...                                ++++                  +||++||++|+.+
T Consensus       140 -~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~  218 (305)
T PRK14264        140 -KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD  218 (305)
T ss_pred             -ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence             599999986421                                0110                  1899999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHH
Q 048308          103 PSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus       103 p~llllDEPtsgLD~~~~~~i~  124 (413)
                      |++|+|||||+|||..++..+.
T Consensus       219 p~lLLLDEPtsgLD~~~~~~l~  240 (305)
T PRK14264        219 PEVILMDEPASALDPIATSKIE  240 (305)
T ss_pred             CCEEEEeCCcccCCHHHHHHHH
Confidence            9999999999999999998883

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=240.67  Aligned_cols=121  Identities=26%  Similarity=0.357  Sum_probs=103.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      +|+|||+++++||+++|+|+||||||||+|+|+|.++  +.+|+|.++|.++..       ..++.++||+|+.  .+++
T Consensus       339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~  416 (623)
T PRK10261        339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP  416 (623)
T ss_pred             EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence            6899999999999999999999999999999999987  467999999986532       1356799999986  5889


Q ss_pred             CCCHHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           73 HLTVTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        73 ~lTv~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      .+||.|++.+....                    +++               +||+.||++|+.+|++|+|||||+|||.
T Consensus       417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~  496 (623)
T PRK10261        417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV  496 (623)
T ss_pred             CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            99999998764311                    111               1899999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          118 TIAKQIL  124 (413)
Q Consensus       118 ~~~~~i~  124 (413)
                      .++.+++
T Consensus       497 ~~~~~i~  503 (623)
T PRK10261        497 SIRGQII  503 (623)
T ss_pred             HHHHHHH
Confidence            9998883

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.93  E-value=6.9e-26  Score=241.86  Aligned_cols=158  Identities=23%  Similarity=0.337  Sum_probs=126.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+|+||||||||+|+|+|++++  .+|+|.+||.+..+    ..++.++||+|++.+|+ -|++
T Consensus       350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~  426 (588)
T PRK13657        350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIE  426 (588)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHH
Confidence            79999999999999999999999999999999999984  67999999987653    45678999999998885 5999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++||||||+||+.+
T Consensus       427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t  506 (588)
T PRK13657        427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET  506 (588)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            99987420             0       111                  289999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      +..+.  +  +.+++++..=+            |+... ..-+|+++.+.+|...+.++.
T Consensus       507 ~~~i~~~l~~~~~~~tvIiit------------Hr~~~-~~~~D~ii~l~~G~i~~~g~~  553 (588)
T PRK13657        507 EAKVKAALDELMKGRTTFIIA------------HRLST-VRNADRILVFDNGRVVESGSF  553 (588)
T ss_pred             HHHHHHHHHHHhcCCEEEEEE------------ecHHH-HHhCCEEEEEECCEEEEeCCH
Confidence            99884  2  22566665532            22211 234888888888877655443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.9e-26  Score=238.63  Aligned_cols=155  Identities=22%  Similarity=0.278  Sum_probs=123.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...     ..++.++|++|+..+++.+||
T Consensus        19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv   96 (501)
T PRK11288         19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV   96 (501)
T ss_pred             EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence            7899999999999999999999999999999999987  467999999987531     235679999999989999999


Q ss_pred             HHHHHHHHH---c-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           77 TETLVFIAL---F-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        77 ~e~l~f~~~---~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+.+...   .                   +++              +||+.||++|+.+|++++|||||+|||+.++
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  176 (501)
T PRK11288         97 AENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI  176 (501)
T ss_pred             HHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence            999987421   0                   110              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ..+.     +.++|.++..-+            |+.....+.||+++.+.+|+..
T Consensus       177 ~~l~~~l~~~~~~g~tiiiit------------Hd~~~~~~~~d~i~~l~~G~i~  219 (501)
T PRK11288        177 EQLFRVIRELRAEGRVILYVS------------HRMEEIFALCDAITVFKDGRYV  219 (501)
T ss_pred             HHHHHHHHHHHhCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEE
Confidence            8884     223576655532            3333334557777777777654

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.93  E-value=7.8e-26  Score=239.36  Aligned_cols=157  Identities=31%  Similarity=0.456  Sum_probs=124.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|++.+++. |++
T Consensus       333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~  409 (544)
T TIGR01842       333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVA  409 (544)
T ss_pred             ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHH
Confidence            7999999999999999999999999999999999987  467999999987642    456789999999988875 999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++|||||+|||+.+
T Consensus       410 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~  489 (544)
T TIGR01842       410 ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG  489 (544)
T ss_pred             HHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence            99974210             0       111                  189999999999999999999999999999


Q ss_pred             HHHHH--H--h-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          120 AKQIL--L--N-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       120 ~~~i~--l--l-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      +.++.  +  + .+|+++..-+            |+... .+.+|.++.+.+|+....++
T Consensus       490 ~~~i~~~l~~~~~~~~tvi~it------------h~~~~-~~~~d~i~~l~~G~i~~~g~  536 (544)
T TIGR01842       490 EQALANAIKALKARGITVVVIT------------HRPSL-LGCVDKILVLQDGRIARFGE  536 (544)
T ss_pred             HHHHHHHHHHHhhCCCEEEEEe------------CCHHH-HHhCCEEEEEECCEEEeeCC
Confidence            99884  2  2 2566655522            23221 24478888888887655443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.93  E-value=4.1e-26  Score=204.83  Aligned_cols=113  Identities=28%  Similarity=0.378  Sum_probs=94.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +++|+|++++|||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...     ..++.++|++|          
T Consensus        15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------   82 (163)
T cd03216          15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARRAGIAMVYQ----------   82 (163)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence            7899999999999999999999999999999999987  467999999987542     23557999998          


Q ss_pred             HHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           77 TETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        77 ~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                              .-...+||+++|++|+.+|++++|||||+|||..++.++.     +..+|.++..
T Consensus        83 --------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii  137 (163)
T cd03216          83 --------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF  137 (163)
T ss_pred             --------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence                    1111249999999999999999999999999999999883     2234665544

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.93  E-value=1.6e-25  Score=260.09  Aligned_cols=142  Identities=26%  Similarity=0.371  Sum_probs=120.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+.+++||+++|+||||||||||+|+|+|..+  +.+|+|.++|++...   ..++.+||++|++.+++.+||+|
T Consensus      1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257      1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred             EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence            7999999999999999999999999999999999987  467999999987642   34567999999999999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--  123 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--  123 (413)
                      ++.+.+.++ .+                                +||+++|++|+.+|++++|||||+|||+.++..+  
T Consensus      2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~ 2111 (2272)
T TIGR01257      2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN 2111 (2272)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence            998754432 11                                1799999999999999999999999999999887  


Q ss_pred             -----------------------------HHhcCCcEEEecCcchHhHHHH
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGVMSYFV  145 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~~~~f~  145 (413)
                                                   .+|.+|+++..|++++....|.
T Consensus      2112 lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257      2112 TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence                                         3556677777777766665553

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.93  E-value=7.8e-26  Score=240.60  Aligned_cols=158  Identities=27%  Similarity=0.466  Sum_probs=125.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++|++|++.+++ .|++
T Consensus       330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~  406 (569)
T PRK10789        330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVA  406 (569)
T ss_pred             cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHH
Confidence            7999999999999999999999999999999999987  467999999987642    45678999999998886 4999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++|||||+|||+.+
T Consensus       407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~  486 (569)
T PRK10789        407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT  486 (569)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence            99976410             0       111                  189999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      +.++.  +  +.+|+++..-+            |+.+. ...+|+++.+.+|+....++.
T Consensus       487 ~~~i~~~l~~~~~~~tii~it------------H~~~~-~~~~d~i~~l~~G~i~~~g~~  533 (569)
T PRK10789        487 EHQILHNLRQWGEGRTVIISA------------HRLSA-LTEASEILVMQHGHIAQRGNH  533 (569)
T ss_pred             HHHHHHHHHHHhCCCEEEEEe------------cchhH-HHcCCEEEEEeCCEEEEecCH
Confidence            99884  2  23567665522            22222 233788888888877655443

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.93  E-value=4.2e-25  Score=211.40  Aligned_cols=157  Identities=25%  Similarity=0.292  Sum_probs=117.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccc-cEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKR-KTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~-~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+|+||||||||+++|+|+....+.+|+|.++|.+...    ..++ .++|++|+..+++.+|+
T Consensus        22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~  101 (252)
T CHL00131         22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSN  101 (252)
T ss_pred             eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccH
Confidence            789999999999999999999999999999999973112468999999987642    1222 47899999989999999


Q ss_pred             HHHHHHHHH--------------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           77 TETLVFIAL--------------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        77 ~e~l~f~~~--------------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      +|++.+...                          ++++                +||+.||++|+.+|++++|||||+|
T Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  181 (252)
T CHL00131        102 ADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG  181 (252)
T ss_pred             HHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            998764321                          0111                1899999999999999999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCC-hhHHHHHhhCCccC
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMN-PSDFLLDLANGVVS  170 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n-~ad~~~~~~~~~~~  170 (413)
                      ||..++..+.     +..+|.++..-+            |+...... ++|+++.+.+|+..
T Consensus       182 LD~~~~~~l~~~l~~~~~~g~tii~~t------------H~~~~~~~~~~d~i~~l~~G~i~  231 (252)
T CHL00131        182 LDIDALKIIAEGINKLMTSENSIILIT------------HYQRLLDYIKPDYVHVMQNGKII  231 (252)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEe------------cCHHHHHhhhCCEEEEEeCCEEE
Confidence            9999998883     223576665533            23222223 25666666666543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.93  E-value=5e-26  Score=228.94  Aligned_cols=157  Identities=27%  Similarity=0.370  Sum_probs=133.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +++|||+++++||+.||+|+||||||||+|+|.|.++  +.+|+|.++|++..     +..+..||.|.|+..+++++||
T Consensus        19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV   96 (501)
T COG3845          19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV   96 (501)
T ss_pred             ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence            5789999999999999999999999999999999998  47899999999863     2456679999999999999999


Q ss_pred             HHHHHHHHHc----------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           77 TETLVFIALF----------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        77 ~e~l~f~~~~----------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      .||+..+..-                      +++              +|||.|-++|..+|++|||||||+-|-+..+
T Consensus        97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~  176 (501)
T COG3845          97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA  176 (501)
T ss_pred             hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            9999775421                      111              1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          121 KQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      ++++     +-++|+.|-+            +.|...+.+..||.+..+..|++.+.
T Consensus       177 ~~lf~~l~~l~~~G~tIi~------------ITHKL~Ev~~iaDrvTVLR~Gkvvgt  221 (501)
T COG3845         177 DELFEILRRLAAEGKTIIF------------ITHKLKEVMAIADRVTVLRRGKVVGT  221 (501)
T ss_pred             HHHHHHHHHHHHCCCEEEE------------EeccHHHHHHhhCeeEEEeCCeEEee
Confidence            9984     5568988777            44666667788888888888876543

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.5e-26  Score=215.31  Aligned_cols=117  Identities=31%  Similarity=0.479  Sum_probs=99.8

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------hhccccEEEEecCCccCCCCCH
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------RTVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++++..+.-.++||-|+||||||||+|+|+|+.++  .+|.|.+||....        +..+|.+|||+||..+||++||
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV   93 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV   93 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence            34555555479999999999999999999999984  6799999998642        2457889999999999999999


Q ss_pred             HHHHHHHHHcC--------------------Cc-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALFR--------------------LP-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~~--------------------~~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.||.|.....                    .|       +|||+|||||+++|++|+||||.+.||-..+.++
T Consensus        94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei  167 (352)
T COG4148          94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI  167 (352)
T ss_pred             ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence            99999875321                    11       3899999999999999999999999999888777

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.93  E-value=8.1e-26  Score=245.69  Aligned_cols=159  Identities=25%  Similarity=0.438  Sum_probs=126.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+|+||||||||+|+|+|.+++  .+|+|.+||.+..+    ..++.++||+|++.+++ .|++
T Consensus       472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~  548 (694)
T TIGR01846       472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIR  548 (694)
T ss_pred             ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHH
Confidence            79999999999999999999999999999999999974  67999999998653    45778999999988875 5999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++|||||||||+.+
T Consensus       549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~  628 (694)
T TIGR01846       549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES  628 (694)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence            99986310             0       111                  189999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      +.++.  +  +.+|+++..            +.|..... ..+|.++.+.+|++...++.+
T Consensus       629 ~~~i~~~l~~~~~~~t~i~------------itH~~~~~-~~~d~ii~l~~G~i~~~g~~~  676 (694)
T TIGR01846       629 EALIMRNMREICRGRTVII------------IAHRLSTV-RACDRIIVLEKGQIAESGRHE  676 (694)
T ss_pred             HHHHHHHHHHHhCCCEEEE------------EeCChHHH-HhCCEEEEEeCCEEEEeCCHH
Confidence            99884  2  235666544            23443333 338888888888876555433

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.93  E-value=7.2e-26  Score=219.50  Aligned_cols=131  Identities=25%  Similarity=0.382  Sum_probs=103.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhc-cccEEEEecCCccC--CCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTV-KRKTGFVAHSNVFY--LHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-~~~~~~v~q~~~~~--~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..... ++.++|++|+..+.  ...+++|
T Consensus        22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~   99 (272)
T PRK15056         22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED   99 (272)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence            7899999999999999999999999999999999987  46799999998764432 34599999986542  2346777


Q ss_pred             HHHHHH-----------------------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           79 TLVFIA-----------------------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        79 ~l~f~~-----------------------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ++.+..                       .+++.              +||+.||++|+.+|++++|||||+|||+.++.
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~  179 (272)
T PRK15056        100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA  179 (272)
T ss_pred             heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            654210                       11111              18999999999999999999999999999999


Q ss_pred             HHH-----HhcCCcEEEe
Q 048308          122 QIL-----LNSEGNSLHV  134 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~  134 (413)
                      .+.     +.++|.++..
T Consensus       180 ~l~~~L~~~~~~g~tvii  197 (272)
T PRK15056        180 RIISLLRELRDEGKTMLV  197 (272)
T ss_pred             HHHHHHHHHHhCCCEEEE
Confidence            883     2345776655

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.92  E-value=4.6e-25  Score=210.51  Aligned_cols=133  Identities=31%  Similarity=0.403  Sum_probs=103.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+..+.+|+|.++|.+...     ..++.++|++|+..+++.+|+
T Consensus        16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   95 (248)
T PRK09580         16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSN   95 (248)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhH
Confidence            789999999999999999999999999999999985211467999999986532     123469999999877777665


Q ss_pred             HHHHHHH--------------------------HHcCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           77 TETLVFI--------------------------ALFRLP----------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        77 ~e~l~f~--------------------------~~~~~~----------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      .+++.+.                          ..++++                +||++||++|+.+|++++|||||+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~  175 (248)
T PRK09580         96 QFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG  175 (248)
T ss_pred             HHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            5443211                          001111                2899999999999999999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEe
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ||..++..+.     +.++|.++..
T Consensus       176 LD~~~~~~l~~~l~~l~~~~~tiii  200 (248)
T PRK09580        176 LDIDALKIVADGVNSLRDGKRSFII  200 (248)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            9999998884     2234666555

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=2.6e-25  Score=234.65  Aligned_cols=155  Identities=27%  Similarity=0.367  Sum_probs=121.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++   .+|+|.++|.++..       ..++.++|++|+.  .+++
T Consensus       301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~  377 (529)
T PRK15134        301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP  377 (529)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence            7899999999999999999999999999999999974   57999999986532       1245699999986  4788


Q ss_pred             CCCHHHHHHHHHHc---------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIALF---------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~~---------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      .+||+|++.+....                     +++               +||+.||++|+.+|++++|||||+|||
T Consensus       378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  457 (529)
T PRK15134        378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD  457 (529)
T ss_pred             cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence            89999999874321                     111               189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          117 STIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       117 ~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ..++..+.     +..+ |.+|-.-+            |+.+.....||+++.+.+|++..
T Consensus       458 ~~~~~~l~~~l~~~~~~~~~tvi~vs------------Hd~~~~~~~~d~i~~l~~G~i~~  506 (529)
T PRK15134        458 KTVQAQILALLKSLQQKHQLAYLFIS------------HDLHVVRALCHQVIVLRQGEVVE  506 (529)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEEEEEe------------CCHHHHHHhcCeEEEEECCEEEE
Confidence            99999884     2223 66555522            34333345577887777776543

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.92  E-value=1.2e-25  Score=239.07  Aligned_cols=159  Identities=24%  Similarity=0.386  Sum_probs=125.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||.++|+|+||||||||+|+|+|.++  +.+|+|.+||.+.++    ..++.++|++|++.+|+ -|++
T Consensus       347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~  423 (571)
T TIGR02203       347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIA  423 (571)
T ss_pred             cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHH
Confidence            7999999999999999999999999999999999997  467999999987642    45678999999998875 5999


Q ss_pred             HHHHHHHH--c-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIAL--F-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~~--~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ||+.+...  .                   ++|                  +||++|||+++.+|++++||||||+||..
T Consensus       424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~  503 (571)
T TIGR02203       424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE  503 (571)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence            99986421  0                   111                  28999999999999999999999999999


Q ss_pred             HHHHHH--Hh--cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          119 IAKQIL--LN--SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       119 ~~~~i~--ll--~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      ++..+.  +.  .+++++..=+            |+. .....+|.++.+.+|+....++.+
T Consensus       504 ~~~~i~~~L~~~~~~~tiIiit------------H~~-~~~~~~D~ii~l~~g~i~~~g~~~  552 (571)
T TIGR02203       504 SERLVQAALERLMQGRTTLVIA------------HRL-STIEKADRIVVMDDGRIVERGTHN  552 (571)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEe------------hhh-HHHHhCCEEEEEeCCEEEeeCCHH
Confidence            999984  22  2466655522            332 223447888888777766544433

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.92  E-value=2.7e-25  Score=208.31  Aligned_cols=119  Identities=27%  Similarity=0.426  Sum_probs=100.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~   73 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|..++  .+|+|.++|.+...        ..++.++|++|+..++ .
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~   92 (218)
T cd03290          16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-N   92 (218)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc-c
Confidence            78999999999999999999999999999999999873  67999999986532        1245699999998777 5


Q ss_pred             CCHHHHHHHHHH------------cCC------------------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           74 LTVTETLVFIAL------------FRL------------------P-------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        74 lTv~e~l~f~~~------------~~~------------------~-------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      .|++||+.+...            +++                  +       +||+.||++|+.+|++++|||||+|||
T Consensus        93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD  172 (218)
T cd03290          93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD  172 (218)
T ss_pred             ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence            799999975310            010                  0       189999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          117 STIAKQI  123 (413)
Q Consensus       117 ~~~~~~i  123 (413)
                      ..++..+
T Consensus       173 ~~~~~~l  179 (218)
T cd03290         173 IHLSDHL  179 (218)
T ss_pred             HHHHHHH
Confidence            9998765

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.92  E-value=3.1e-25  Score=257.78  Aligned_cols=141  Identities=26%  Similarity=0.407  Sum_probs=123.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+.+++||+++|+||||||||||+|+|+|..+  +.+|+|.++|+++..   ..++.+||++|++.+++.+||+|
T Consensus       945 aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E 1022 (2272)
T TIGR01257       945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAE 1022 (2272)
T ss_pred             EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHH
Confidence            7899999999999999999999999999999999987  468999999987642   34567999999999999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--  123 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--  123 (413)
                      ++.|.+..+ .+                                +||++||++|+.+|++++|||||+|||+.++..+  
T Consensus      1023 ~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~ 1102 (2272)
T TIGR01257      1023 HILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102 (2272)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH
Confidence            999865432 11                                1899999999999999999999999999999877  


Q ss_pred             ----------------------------HHhcCCcEEEecCcchHhHHH
Q 048308          124 ----------------------------LLNSEGNSLHVGKGDGVMSYF  144 (413)
Q Consensus       124 ----------------------------~ll~~G~~v~~G~~~~~~~~f  144 (413)
                                                  .+|++|+++..|++..+...|
T Consensus      1103 lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1103 LLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred             HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence                                        467889999999988877655

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1e-25  Score=236.80  Aligned_cols=155  Identities=23%  Similarity=0.371  Sum_probs=123.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecC---CccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHS---NVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~---~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++  .+|+|.++|.+..+     ..++.++|++|+   ..+++.
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN  355 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence            68999999999999999999999999999999999874  67999999976532     234579999998   467889


Q ss_pred             CCHHHHHHHHHH----------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeC
Q 048308           74 LTVTETLVFIAL----------------------------FRLP---------------IKRVSRAQELLINPSLLFLDE  110 (413)
Q Consensus        74 lTv~e~l~f~~~----------------------------~~~~---------------~krvsia~~l~~~p~llllDE  110 (413)
                      +||+|++.+...                            ++++               +||+.||++|+.+|++|+|||
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE  435 (510)
T PRK09700        356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE  435 (510)
T ss_pred             CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence            999999865311                            1111               189999999999999999999


Q ss_pred             CCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          111 PASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       111 PtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ||+|||..++..+.     +.++|.++..-            .|+.+.....||+++.+.+|+..
T Consensus       436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~v------------sHd~~~~~~~~d~i~~l~~G~i~  488 (510)
T PRK09700        436 PTRGIDVGAKAEIYKVMRQLADDGKVILMV------------SSELPEIITVCDRIAVFCEGRLT  488 (510)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHCCCEEEEE------------cCCHHHHHhhCCEEEEEECCEEE
Confidence            99999999999884     22457666552            34544455678888888777654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3e-25  Score=238.30  Aligned_cols=120  Identities=30%  Similarity=0.376  Sum_probs=101.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-------------Ch----hc-cccEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-------------SR----TV-KRKTGF   63 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-------------~~----~~-~~~~~~   63 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|++++  .+|+|.++|...             ..    .. ++.++|
T Consensus        31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~  108 (623)
T PRK10261         31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM  108 (623)
T ss_pred             EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence            78999999999999999999999999999999999874  579999988532             11    11 246999


Q ss_pred             EecCC--ccCCCCCHHHHHHHHHHc--------------------CCc-----------------hhHHHHHHHHhhCCC
Q 048308           64 VAHSN--VFYLHLTVTETLVFIALF--------------------RLP-----------------IKRVSRAQELLINPS  104 (413)
Q Consensus        64 v~q~~--~~~~~lTv~e~l~f~~~~--------------------~~~-----------------~krvsia~~l~~~p~  104 (413)
                      |+|++  .+++.+||+|++.+....                    +++                 +||+.||++|+.+|+
T Consensus       109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~  188 (623)
T PRK10261        109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA  188 (623)
T ss_pred             EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence            99987  678899999999875321                    221                 189999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHH
Q 048308          105 LLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus       105 llllDEPtsgLD~~~~~~i  123 (413)
                      +|+|||||+|||+.++.++
T Consensus       189 lLllDEPt~~LD~~~~~~l  207 (623)
T PRK10261        189 VLIADEPTTALDVTIQAQI  207 (623)
T ss_pred             EEEEeCCCCccCHHHHHHH
Confidence            9999999999999999887

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=4.1e-25  Score=232.71  Aligned_cols=156  Identities=24%  Similarity=0.390  Sum_probs=120.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC-Ccc---cCh-------hccccEEEEecCCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-NNP---LSR-------TVKRKTGFVAHSNVF   70 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~---~~~-------~~~~~~~~v~q~~~~   70 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++ |.+   ...       ..++.++|++|+..+
T Consensus       299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l  376 (520)
T TIGR03269       299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL  376 (520)
T ss_pred             EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence            7899999999999999999999999999999999986  467999996 532   111       224569999999888


Q ss_pred             CCCCCHHHHHHHHH------------------HcCCc-------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           71 YLHLTVTETLVFIA------------------LFRLP-------------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        71 ~~~lTv~e~l~f~~------------------~~~~~-------------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      ++.+||+|++.+..                  .++++                   +||+.||++|+.+|++|+|||||+
T Consensus       377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~  456 (520)
T TIGR03269       377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG  456 (520)
T ss_pred             CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            99999999997521                  11221                   189999999999999999999999


Q ss_pred             CCCHHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          114 GLDSTIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |||+.++..+.     +..+ |.++..-            .|+.......+|+++.+.+|....
T Consensus       457 ~LD~~~~~~l~~~l~~l~~~~g~tvi~v------------sHd~~~~~~~~d~i~~l~~G~i~~  508 (520)
T TIGR03269       457 TMDPITKVDVTHSILKAREEMEQTFIIV------------SHDMDFVLDVCDRAALMRDGKIVK  508 (520)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCcEEEEE------------eCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999984     2233 6655552            344444445677777777776543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.6e-25  Score=202.58  Aligned_cols=150  Identities=29%  Similarity=0.353  Sum_probs=126.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lT   75 (413)
                      +||++||+++++||+.+||||||||||||.++|+|+-....++|+|.++|+++.     +..+..+..-+|.+.-+|..|
T Consensus        18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~   97 (251)
T COG0396          18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVT   97 (251)
T ss_pred             hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCee
Confidence            489999999999999999999999999999999998543357899999999864     234556778889999999999


Q ss_pred             HHHHHHHHHHcC----------------------Cc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           76 VTETLVFIALFR----------------------LP----------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        76 v~e~l~f~~~~~----------------------~~----------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +.+.|+.+...+                      ++                +||..|+..++.+|++.+||||-||||.
T Consensus        98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDI  177 (251)
T COG0396          98 NSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI  177 (251)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccH
Confidence            999998665431                      11                1899999999999999999999999999


Q ss_pred             HHHHHH--------------------------------HHhcCCcEEEecCcchHhHHHHhcCCCC
Q 048308          118 TIAKQI--------------------------------LLNSEGNSLHVGKGDGVMSYFVGIGFEP  151 (413)
Q Consensus       118 ~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~~f~~~g~~~  151 (413)
                      .+-..|                                .+|.+|++|-.|.+ ++..+++.-||+|
T Consensus       178 dalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~  242 (251)
T COG0396         178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW  242 (251)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence            888766                                26778888888887 7777788777764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.92  E-value=4.9e-25  Score=207.77  Aligned_cols=123  Identities=23%  Similarity=0.307  Sum_probs=98.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...        ..+...+.+.+||+||+.
T Consensus        37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~enl~  106 (224)
T cd03220          37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL--------LGLGGGFNPELTGRENIY  106 (224)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh--------hcccccCCCCCcHHHHHH
Confidence            7899999999999999999999999999999999987  467999999976421        111234457889999997


Q ss_pred             HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +....                   +++              +||++||++|+.+|++++|||||+|||+.++..+.    
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~  186 (224)
T cd03220         107 LNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR  186 (224)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            65321                   110              18999999999999999999999999999998873    


Q ss_pred             -HhcCCcEEEe
Q 048308          125 -LNSEGNSLHV  134 (413)
Q Consensus       125 -ll~~G~~v~~  134 (413)
                       +..+|.++..
T Consensus       187 ~~~~~~~tiii  197 (224)
T cd03220         187 ELLKQGKTVIL  197 (224)
T ss_pred             HHHhCCCEEEE
Confidence             2345665554

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.92  E-value=1.5e-25  Score=214.85  Aligned_cols=114  Identities=32%  Similarity=0.450  Sum_probs=96.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCC--CCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLH--LTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~--lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|       +..++|++|+..+++.  .|++++
T Consensus        19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~~~i~~v~q~~~~~~~l~~~~~~~   89 (251)
T PRK09544         19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------KLRIGYVPQKLYLDTTLPLTVNRF   89 (251)
T ss_pred             EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------ccCEEEeccccccccccChhHHHH
Confidence            7899999999999999999999999999999999987  4679999987       2359999999877665  478877


Q ss_pred             HHHH------------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           80 LVFI------------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        80 l~f~------------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +.+.            ..+++.              +||+.||++|+.+|++++|||||+|||+.++..+.
T Consensus        90 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  160 (251)
T PRK09544         90 LRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY  160 (251)
T ss_pred             HhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence            6431            111221              28999999999999999999999999999998873

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.92  E-value=9.4e-25  Score=210.86  Aligned_cols=149  Identities=24%  Similarity=0.332  Sum_probs=114.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|++++|||+++|+||||||||||+++|+|.++  +.+|+|.++|.         ++++.|+..+.+.+|++|++.
T Consensus        39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~---------~~~~~~~~~~~~~~tv~enl~  107 (264)
T PRK13546         39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE---------VSVIAISAGLSGQLTGIENIE  107 (264)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE---------EeEEecccCCCCCCcHHHHHH
Confidence            6899999999999999999999999999999999987  46799999984         346677777778899999987


Q ss_pred             HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +....                   ++.              +||+.||++|+.+|++++|||||+|||+.++..++    
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~  187 (264)
T PRK13546        108 FKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY  187 (264)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            64211                   110              18999999999999999999999999999887773    


Q ss_pred             -HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          125 -LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       125 -ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                       +..+|.++..-+            |+.......+|+++.+.+|.....+
T Consensus       188 ~~~~~g~tiIiis------------H~~~~i~~~~d~i~~l~~G~i~~~g  225 (264)
T PRK13546        188 EFKEQNKTIFFVS------------HNLGQVRQFCTKIAWIEGGKLKDYG  225 (264)
T ss_pred             HHHHCCCEEEEEc------------CCHHHHHHHcCEEEEEECCEEEEeC
Confidence             223566555422            2322223456777777777665433

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.92  E-value=3.9e-25  Score=215.34  Aligned_cols=146  Identities=26%  Similarity=0.315  Sum_probs=114.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      .+|+|+|+++++||+++|+||||||||||+++|+|++++  .+|+|.++|         .++|++|+..+++. ||+|++
T Consensus        51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g---------~i~yv~q~~~l~~~-tv~enl  118 (282)
T cd03291          51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG---------RISFSSQFSWIMPG-TIKENI  118 (282)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---------EEEEEeCccccccc-CHHHHh
Confidence            379999999999999999999999999999999999874  679999987         38999999887764 999998


Q ss_pred             HHHHH------------cCC----------------------c---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIAL------------FRL----------------------P---IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~~------------~~~----------------------~---~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .+...            .++                      +   +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus       119 ~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l  198 (282)
T cd03291         119 IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI  198 (282)
T ss_pred             hcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence            75310            111                      0   1899999999999999999999999999999876


Q ss_pred             H--H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          124 L--L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       124 ~--l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .  +   +.+|.++..-+            |+.... ..+|+++.+.+|++..
T Consensus       199 ~~~ll~~~~~~~tIiiis------------H~~~~~-~~~d~i~~l~~G~i~~  238 (282)
T cd03291         199 FESCVCKLMANKTRILVT------------SKMEHL-KKADKILILHEGSSYF  238 (282)
T ss_pred             HHHHHHHhhCCCEEEEEe------------CChHHH-HhCCEEEEEECCEEEE
Confidence            3  2   23455554422            222222 2478888888887643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.92  E-value=1.7e-25  Score=238.09  Aligned_cols=157  Identities=24%  Similarity=0.363  Sum_probs=124.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+|+||||||||+|+|+|.+++  .+|+|.+||.+.++    ..++.++|++|++.+|+ .|++
T Consensus       355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~  431 (576)
T TIGR02204       355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA-ASVM  431 (576)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc-ccHH
Confidence            79999999999999999999999999999999999974  67999999987643    45678999999988774 5999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||+++||+++.+|++++||||||+||..+
T Consensus       432 ~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~  511 (576)
T TIGR02204       432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES  511 (576)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence            99987310             0       111                  189999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      ++.+.  +  +.+|+++..=            .|..+. ...+|.++.+.+|+....++
T Consensus       512 ~~~i~~~l~~~~~~~t~Iii------------tH~~~~-~~~~d~vi~l~~g~~~~~g~  557 (576)
T TIGR02204       512 EQLVQQALETLMKGRTTLII------------AHRLAT-VLKADRIVVMDQGRIVAQGT  557 (576)
T ss_pred             HHHHHHHHHHHhCCCEEEEE------------ecchHH-HHhCCEEEEEECCEEEeeec
Confidence            98873  2  2256666552            233322 23478888888887665444

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.92  E-value=2.9e-25  Score=236.91  Aligned_cols=158  Identities=21%  Similarity=0.265  Sum_probs=125.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||.++|+||||||||||+++|+|.++  +.+|+|.+||.+..+    ..++.++||+|+..+++ .|++
T Consensus       350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~  426 (585)
T TIGR01192       350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIR  426 (585)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHH
Confidence            7899999999999999999999999999999999987  477999999987642    45678999999988875 6999


Q ss_pred             HHHHHHHH--------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL--------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~--------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...                    .++|                  +||++|||+|+.+|++++|||||+|||+.+
T Consensus       427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~  506 (585)
T TIGR01192       427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET  506 (585)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence            99987410                    0111                  189999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      +..+.    -+.+|+++-.-+            |+.... ..+|.++.+.+|+....++.
T Consensus       507 ~~~i~~~l~~~~~~~tvI~is------------H~~~~~-~~~d~i~~l~~G~i~~~g~~  553 (585)
T TIGR01192       507 EARVKNAIDALRKNRTTFIIA------------HRLSTV-RNADLVLFLDQGRLIEKGSF  553 (585)
T ss_pred             HHHHHHHHHHHhCCCEEEEEE------------cChHHH-HcCCEEEEEECCEEEEECCH
Confidence            99884    223566655532            333222 23888898888877654443

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.92  E-value=2.3e-25  Score=209.85  Aligned_cols=147  Identities=31%  Similarity=0.459  Sum_probs=110.9

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC--CCCCHHHHHHHHHH
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY--LHLTVTETLVFIAL   85 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~f~~~   85 (413)
                      +++++||+++|+|+||||||||+++|+|.++  +.+|+|.+||++..+ .++.++|++|++.++  ..+|++|++.+...
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~   77 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT   77 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence            4689999999999999999999999999987  467999999987543 356799999997653  34799999865311


Q ss_pred             -----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           86 -----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        86 -----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                                             +++.              +||+.||++|+.+|+++++||||+|||+.++..+.    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~  157 (223)
T TIGR03771        78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI  157 (223)
T ss_pred             cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence                                   0110              18999999999999999999999999999999883    


Q ss_pred             -HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          125 -LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       125 -ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                       +..+|.++..-+            |+.+...+.+|+++.+ +|+..
T Consensus       158 ~~~~~~~tvii~s------------H~~~~~~~~~d~i~~l-~G~i~  191 (223)
T TIGR03771       158 ELAGAGTAILMTT------------HDLAQAMATCDRVVLL-NGRVI  191 (223)
T ss_pred             HHHHcCCEEEEEe------------CCHHHHHHhCCEEEEE-CCEEE
Confidence             223576665532            3333333446666655 56544

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=4.9e-25  Score=231.39  Aligned_cols=157  Identities=25%  Similarity=0.372  Sum_probs=123.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++ +.+|+|.++|++...     ..++.++|++|+.   .+++.
T Consensus       277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (506)
T PRK13549        277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV  355 (506)
T ss_pred             cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence            78999999999999999999999999999999999862 257999999976531     2345699999985   47788


Q ss_pred             CCHHHHHHHHHH------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           74 LTVTETLVFIAL------------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        74 lTv~e~l~f~~~------------------------~~~~---------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      +||.|++.+...                        +++.               +||+.||++|+.+|++++|||||+|
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~  435 (506)
T PRK13549        356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG  435 (506)
T ss_pred             CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            999999975310                        0111               1899999999999999999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+.++..+.     +..+|.+|..-            .|+.....+.||+++.+.+|+...
T Consensus       436 LD~~~~~~l~~~l~~l~~~g~tvi~~------------sHd~~~~~~~~d~v~~l~~G~i~~  485 (506)
T PRK13549        436 IDVGAKYEIYKLINQLVQQGVAIIVI------------SSELPEVLGLSDRVLVMHEGKLKG  485 (506)
T ss_pred             cCHhHHHHHHHHHHHHHHCCCEEEEE------------CCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999883     33467766653            345444556788888888887643

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=7.7e-25  Score=231.07  Aligned_cols=156  Identities=26%  Similarity=0.331  Sum_probs=117.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccCh-------hc-cccEEEEecCCc-
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLSR-------TV-KRKTGFVAHSNV-   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-------~~-~~~~~~v~q~~~-   69 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++.   +.+|+|.++|.+...       .. ++.++|++|+.. 
T Consensus        24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~  103 (529)
T PRK15134         24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV  103 (529)
T ss_pred             eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchh
Confidence            799999999999999999999999999999999998742   268999999987532       11 246999999864 


Q ss_pred             -cCCCCCHHHHHHHHHH--------------------cCCc-----------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308           70 -FYLHLTVTETLVFIAL--------------------FRLP-----------------IKRVSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        70 -~~~~lTv~e~l~f~~~--------------------~~~~-----------------~krvsia~~l~~~p~llllDEP  111 (413)
                       +.+.+|++|++.+...                    ++++                 +||+.||++|+.+|++|+||||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEP  183 (529)
T PRK15134        104 SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEP  183 (529)
T ss_pred             hcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence             5677899998764211                    1121                 1899999999999999999999


Q ss_pred             CCCCCHHHHHHHH--H---hcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          112 ASGLDSTIAKQIL--L---NSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       112 tsgLD~~~~~~i~--l---l~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      |+|||+.++..+.  +   ..+ |.++..-            .|+.....+.||+++.+.+|..
T Consensus       184 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~v------------tHd~~~~~~~~dri~~l~~G~i  235 (529)
T PRK15134        184 TTALDVSVQAQILQLLRELQQELNMGLLFI------------THNLSIVRKLADRVAVMQNGRC  235 (529)
T ss_pred             CCccCHHHHHHHHHHHHHHHHhcCCeEEEE------------cCcHHHHHHhcCEEEEEECCEE
Confidence            9999999998883  1   122 6555442            2333333445666666666654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.92  E-value=6.1e-25  Score=212.22  Aligned_cols=122  Identities=29%  Similarity=0.458  Sum_probs=100.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC-C-C-CeeEEEEECCccc---Ch-----hccccEEEEecCC--
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS-T-G-ETRGNIDYNNNPL---SR-----TVKRKTGFVAHSN--   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~~~---~~-----~~~~~~~~v~q~~--   68 (413)
                      +++|||+++++||+++|+|+|||||||+.++|.|+++ + + ..+|+|.++|+++   ++     ...+.+++++|++  
T Consensus        20 av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~   99 (316)
T COG0444          20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMT   99 (316)
T ss_pred             EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchh
Confidence            7899999999999999999999999999999999987 3 3 3668999999864   22     1234799999996  


Q ss_pred             ccCCCCCHHHHHHHHHHc---------------------CCc-----------------hhHHHHHHHHhhCCCEEEEeC
Q 048308           69 VFYLHLTVTETLVFIALF---------------------RLP-----------------IKRVSRAQELLINPSLLFLDE  110 (413)
Q Consensus        69 ~~~~~lTv~e~l~f~~~~---------------------~~~-----------------~krvsia~~l~~~p~llllDE  110 (413)
                      .+.|.+||.+.+.=....                     ++|                 +|||.||.+|+.+|++||.||
T Consensus       100 sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADE  179 (316)
T COG0444         100 SLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE  179 (316)
T ss_pred             hcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCC
Confidence            677888887665322211                     111                 189999999999999999999


Q ss_pred             CCCCCCHHHHHHH
Q 048308          111 PASGLDSTIAKQI  123 (413)
Q Consensus       111 PtsgLD~~~~~~i  123 (413)
                      ||++||...+.+|
T Consensus       180 PTTALDvt~QaqI  192 (316)
T COG0444         180 PTTALDVTVQAQI  192 (316)
T ss_pred             CcchhhHHHHHHH
Confidence            9999999999998

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.92  E-value=1.2e-25  Score=204.82  Aligned_cols=112  Identities=36%  Similarity=0.530  Sum_probs=90.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.++|.+...    ..++.++|++|         ..
T Consensus        14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------~l   82 (180)
T cd03214          14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQ---------AL   82 (180)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------HH
Confidence            7899999999999999999999999999999999987  467999999987632    23456899998         12


Q ss_pred             HHHHHHHHcC-----C---chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           78 ETLVFIALFR-----L---PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        78 e~l~f~~~~~-----~---~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +.+.+....+     +   .+||++||++|+.+|++++|||||+|||..++..+.
T Consensus        83 ~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~  137 (180)
T cd03214          83 ELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL  137 (180)
T ss_pred             HHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence            2111111111     1   238999999999999999999999999999998883

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=8.4e-25  Score=229.34  Aligned_cols=156  Identities=27%  Similarity=0.431  Sum_probs=123.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++  .+|+|.++|.+...     ..++.++|++|+.   .+++.
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~  344 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG  344 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence            68999999999999999999999999999999999874  67999999976532     2345699999995   57889


Q ss_pred             CCHHHHHHHHHH-------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           74 LTVTETLVFIAL-------------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        74 lTv~e~l~f~~~-------------------------~~~~---------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      +||+|++.+...                         ++++               +||+.||++|+.+|++++|||||+
T Consensus       345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~  424 (501)
T PRK10762        345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR  424 (501)
T ss_pred             CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence            999999975210                         1121               189999999999999999999999


Q ss_pred             CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |||..++..+.     +..+|.++-.-            .|+.....+.||+++.+.+|+...
T Consensus       425 ~LD~~~~~~l~~~l~~~~~~g~tviiv------------tHd~~~~~~~~d~v~~l~~G~i~~  475 (501)
T PRK10762        425 GVDVGAKKEIYQLINQFKAEGLSIILV------------SSEMPEVLGMSDRILVMHEGRISG  475 (501)
T ss_pred             CCCHhHHHHHHHHHHHHHHCCCEEEEE------------cCCHHHHHhhCCEEEEEECCEEEE
Confidence            99999998883     33457666553            344444456688888888887643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=2.9e-25  Score=232.71  Aligned_cols=156  Identities=26%  Similarity=0.400  Sum_probs=123.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|++...     ..++.++|++|+.   .+++.
T Consensus       275 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~  353 (500)
T TIGR02633       275 RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI  353 (500)
T ss_pred             ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence            78999999999999999999999999999999999863 257999999987532     2345799999995   57889


Q ss_pred             CCHHHHHHHHHH--c----------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           74 LTVTETLVFIAL--F----------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        74 lTv~e~l~f~~~--~----------------------~~~---------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      +||+|++.+...  .                      ++.               +||+.||++|+.+|++++|||||+|
T Consensus       354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~  433 (500)
T TIGR02633       354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG  433 (500)
T ss_pred             CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            999999876310  0                      110               1899999999999999999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      ||..++..+.     +..+|.++..            ..|+.....+.||+++.+.+|...
T Consensus       434 LD~~~~~~l~~~l~~l~~~g~tvii------------vsHd~~~~~~~~d~v~~l~~G~i~  482 (500)
T TIGR02633       434 VDVGAKYEIYKLINQLAQEGVAIIV------------VSSELAEVLGLSDRVLVIGEGKLK  482 (500)
T ss_pred             cCHhHHHHHHHHHHHHHhCCCEEEE------------ECCCHHHHHHhCCEEEEEECCEEE
Confidence            9999999874     3345766655            235555555668888877777654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.3e-25  Score=230.81  Aligned_cols=156  Identities=17%  Similarity=0.303  Sum_probs=124.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~   73 (413)
                      +++|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.++|++...     ..++.++|++|+.   .+++.
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~  345 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV  345 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence            6899999999999999999999999999999999987  467999999986531     2345799999985   48889


Q ss_pred             CCHHHHHHHHHH-------------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           74 LTVTETLVFIAL-------------------------FRLP---------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        74 lTv~e~l~f~~~-------------------------~~~~---------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      +|+.|++.+...                         +++.               +||+.||++|+.+|++|+|||||+
T Consensus       346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~  425 (501)
T PRK11288        346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR  425 (501)
T ss_pred             CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence            999999864210                         1120               189999999999999999999999


Q ss_pred             CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |||..++.++.     +..+|.+|-.-            .|+.....+.||+++.+.+|+...
T Consensus       426 ~LD~~~~~~l~~~l~~l~~~g~tviiv------------sHd~~~~~~~~d~i~~l~~g~i~~  476 (501)
T PRK11288        426 GIDVGAKHEIYNVIYELAAQGVAVLFV------------SSDLPEVLGVADRIVVMREGRIAG  476 (501)
T ss_pred             CCCHhHHHHHHHHHHHHHhCCCEEEEE------------CCCHHHHHhhCCEEEEEECCEEEE
Confidence            99999999984     33457666552            345445556788888888876543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.5e-25  Score=227.11  Aligned_cols=131  Identities=31%  Similarity=0.471  Sum_probs=108.7

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|+++++||-+||+|+||||||||++.|+|-++  +.+|+|..||.+...    ..++.++++.|...+|. -|+
T Consensus       352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tl  428 (573)
T COG4987         352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTL  428 (573)
T ss_pred             chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH-HHH
Confidence            48999999999999999999999999999999999987  477999999988642    35667899999877774 599


Q ss_pred             HHHHHHHHH-------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIAL-------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~-------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      |+||+.+..             .+       .|                  +||+.|||+|++|.++++|||||.|||+.
T Consensus       429 r~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~  508 (573)
T COG4987         429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI  508 (573)
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChh
Confidence            999987531             11       11                  28999999999999999999999999999


Q ss_pred             HHHHHH--Hh--cCCcEEEe
Q 048308          119 IAKQIL--LN--SEGNSLHV  134 (413)
Q Consensus       119 ~~~~i~--ll--~~G~~v~~  134 (413)
                      |..+++  +.  .+|+++-.
T Consensus       509 TE~~vL~ll~~~~~~kTll~  528 (573)
T COG4987         509 TERQVLALLFEHAEGKTLLM  528 (573)
T ss_pred             hHHHHHHHHHHHhcCCeEEE
Confidence            999994  11  24665554

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=1.4e-24  Score=228.67  Aligned_cols=157  Identities=30%  Similarity=0.357  Sum_probs=116.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC-----------------------ccc-----
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN-----------------------NPL-----   53 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-----------------------~~~-----   53 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+..+.+|+|.++|                       .+.     
T Consensus        15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~   94 (520)
T TIGR03269        15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV   94 (520)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence            7899999999999999999999999999999999862114679999872                       111     


Q ss_pred             -----C----hhccccEEEEecC-CccCCCCCHHHHHHHHHHc-CCc--------------------------------h
Q 048308           54 -----S----RTVKRKTGFVAHS-NVFYLHLTVTETLVFIALF-RLP--------------------------------I   90 (413)
Q Consensus        54 -----~----~~~~~~~~~v~q~-~~~~~~lTv~e~l~f~~~~-~~~--------------------------------~   90 (413)
                           .    ...++.++|++|+ +.+++.+||+|++.+.... +.+                                +
T Consensus        95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  174 (520)
T TIGR03269        95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK  174 (520)
T ss_pred             hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence                 0    1124569999997 6788889999999875321 110                                1


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308           91 KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL  164 (413)
Q Consensus        91 krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~  164 (413)
                      ||+.||++|+.+|++|+|||||+|||+.++..++     +.+ .|.+|..-            .|+.....+.+|+++.+
T Consensus       175 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv------------tHd~~~~~~~~d~i~~l  242 (520)
T TIGR03269       175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT------------SHWPEVIEDLSDKAIWL  242 (520)
T ss_pred             HHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE------------eCCHHHHHHhcCEEEEE
Confidence            8999999999999999999999999999999972     223 36655442            23333334556666666


Q ss_pred             hCCccC
Q 048308          165 ANGVVS  170 (413)
Q Consensus       165 ~~~~~~  170 (413)
                      .+|...
T Consensus       243 ~~G~i~  248 (520)
T TIGR03269       243 ENGEIK  248 (520)
T ss_pred             eCCEEe
Confidence            666543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=5e-25  Score=231.48  Aligned_cols=156  Identities=23%  Similarity=0.356  Sum_probs=122.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++  .+|+|.++|.+...     ..++.++|++|+.   .+++.
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~  355 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD  355 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence            58999999999999999999999999999999999864  67999999986532     1245699999974   47888


Q ss_pred             CCHHHHHHHH----------------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           74 LTVTETLVFI----------------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        74 lTv~e~l~f~----------------------~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      +|+.|++...                      ..++++               +||+.||++|+.+|++|+|||||+|||
T Consensus       356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD  435 (510)
T PRK15439        356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD  435 (510)
T ss_pred             CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence            9999987421                      011221               189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          117 STIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       117 ~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +.++..+.     +..+|.++..            ..|+.....+.||+++.+.+|+...
T Consensus       436 ~~~~~~l~~~l~~l~~~g~tiIi------------vsHd~~~i~~~~d~i~~l~~G~i~~  483 (510)
T PRK15439        436 VSARNDIYQLIRSIAAQNVAVLF------------ISSDLEEIEQMADRVLVMHQGEISG  483 (510)
T ss_pred             hhHHHHHHHHHHHHHhCCCEEEE------------ECCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999884     2235766555            2355555556788888888776653

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.92  E-value=6.1e-25  Score=231.76  Aligned_cols=130  Identities=29%  Similarity=0.484  Sum_probs=109.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.+++  .+|+|.+||.+..+    ..++.++||+|++.+|+ .|++
T Consensus       337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~  413 (529)
T TIGR02857       337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIA  413 (529)
T ss_pred             cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHH
Confidence            79999999999999999999999999999999999974  67999999997642    46778999999998885 5999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++||||||+||+.+
T Consensus       414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~  493 (529)
T TIGR02857       414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET  493 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            99987421             0       111                  189999999999999999999999999999


Q ss_pred             HHHHH--Hh--cCCcEEEe
Q 048308          120 AKQIL--LN--SEGNSLHV  134 (413)
Q Consensus       120 ~~~i~--ll--~~G~~v~~  134 (413)
                      +.++.  +.  .+|+++..
T Consensus       494 ~~~i~~~l~~~~~~~t~i~  512 (529)
T TIGR02857       494 EALVTEALRALAQGRTVLL  512 (529)
T ss_pred             HHHHHHHHHHhcCCCEEEE
Confidence            99884  22  25665544

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.91  E-value=1.5e-24  Score=223.41  Aligned_cols=157  Identities=29%  Similarity=0.423  Sum_probs=118.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCC--ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSN--VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~--~~~~~   73 (413)
                      +++|||+.+++||+++|+|+||||||||.|+|+|+.++  ..|.|.++|.+.+      ...++.+.+|+|++  .+.|.
T Consensus       306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr  383 (539)
T COG1123         306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR  383 (539)
T ss_pred             eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence            68999999999999999999999999999999999984  7799999997621      12345677777775  67899


Q ss_pred             CCHHHHHHHHHHc--------------------CCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           74 LTVTETLVFIALF--------------------RLP---------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        74 lTv~e~l~f~~~~--------------------~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||++.+.-....                    +++               +||++|||+|+.+|+++++|||||.||+.
T Consensus       384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs  463 (539)
T COG1123         384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS  463 (539)
T ss_pred             ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence            9999998654321                    111               28999999999999999999999999999


Q ss_pred             HHHHHH-Hh----c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          119 IAKQIL-LN----S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       119 ~~~~i~-ll----~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      .+.+|+ +|    . -|-+.-+            +.|+.......||.+..+..|+....
T Consensus       464 vqa~VlnLl~~lq~e~g~t~lf------------ISHDl~vV~~i~drv~vm~~G~iVE~  511 (539)
T COG1123         464 VQAQVLNLLKDLQEELGLTYLF------------ISHDLAVVRYIADRVAVMYDGRIVEE  511 (539)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEE------------EeCCHHHHHhhCceEEEEECCeEEEe
Confidence            999983 11    1 1333222            33454455555666666666555443

>PLN03232 ABC transporter C family member; Provisional

Probab=99.91  E-value=4.7e-25  Score=255.89  Aligned_cols=119  Identities=24%  Similarity=0.347  Sum_probs=104.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.+||+|+||||||||+++|.|.+++  .+|+|.+||.++.+    ..|+++++|+|++.+|+. |+|
T Consensus      1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr 1327 (1495)
T PLN03232       1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVR 1327 (1495)
T ss_pred             ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHH
Confidence            79999999999999999999999999999999999974  67999999998753    567889999999999865 999


Q ss_pred             HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |||.+...            .       ++|                  +||++|||+|+.+|++|+||||||+||+.+.
T Consensus      1328 ~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te 1407 (1495)
T PLN03232       1328 FNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407 (1495)
T ss_pred             HHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence            99975310            0       111                  2899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      ..|
T Consensus      1408 ~~I 1410 (1495)
T PLN03232       1408 SLI 1410 (1495)
T ss_pred             HHH
Confidence            888

>PLN03130 ABC transporter C family member; Provisional

Probab=99.91  E-value=6.2e-25  Score=255.54  Aligned_cols=159  Identities=23%  Similarity=0.337  Sum_probs=129.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.+||+|+||||||||+++|.|.+++  .+|+|.+||.++.+    ..|+.+++|+|++.+|.. |+|
T Consensus      1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIr 1330 (1622)
T PLN03130       1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVR 1330 (1622)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHH
Confidence            79999999999999999999999999999999999974  67999999998753    567889999999999865 999


Q ss_pred             HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |||.+...            .       ++|                  +||++|||||+.+|++|+||||||+||+.+.
T Consensus      1331 eNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te 1410 (1622)
T PLN03130       1331 FNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410 (1622)
T ss_pred             HHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence            99976310            0       111                  2899999999999999999999999999999


Q ss_pred             HHH-----------------------------HHhcCCcEEEecCcchHhH----HHHhcCCCCCCCCChhHHHHHhh
Q 048308          121 KQI-----------------------------LLNSEGNSLHVGKGDGVMS----YFVGIGFEPSAAMNPSDFLLDLA  165 (413)
Q Consensus       121 ~~i-----------------------------~ll~~G~~v~~G~~~~~~~----~f~~~g~~~p~~~n~ad~~~~~~  165 (413)
                      ..|                             ++|++|+++.+|++++...    .|.++ +. ......++++..+.
T Consensus      1411 ~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L-~~-~~~~~~~~~l~~~a 1486 (1622)
T PLN03130       1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM-VQ-STGAANAQYLRSLV 1486 (1622)
T ss_pred             HHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHH-HH-HcChhhhHHHHHHH
Confidence            877                             5789999999999988753    23322 00 01122356777776

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.91  E-value=2.1e-24  Score=206.31  Aligned_cols=142  Identities=23%  Similarity=0.269  Sum_probs=109.2

Q ss_pred             ccccceeEEe-----cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSS-----LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~-----~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .++|+++.++     +||+++|+||||||||||+++|+|.++  +.+|+|.++|.        .++|++|+....+.+||
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv   78 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGTV   78 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCCH
Confidence            4667777775     799999999999999999999999987  46799999874        58999999877778999


Q ss_pred             HHHHHHHHH---------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308           77 TETLVFIAL---------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---  124 (413)
Q Consensus        77 ~e~l~f~~~---------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---  124 (413)
                      +|++.+...               ++++              +||++||++|+.+|++++|||||+|||+.++..+.   
T Consensus        79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l  158 (246)
T cd03237          79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI  158 (246)
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            999865321               1111              18999999999999999999999999999999883   


Q ss_pred             --Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhh
Q 048308          125 --LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLA  165 (413)
Q Consensus       125 --ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~  165 (413)
                        +.. +|+++..-+            |+.......||+++.+.
T Consensus       159 ~~~~~~~~~tiiivs------------Hd~~~~~~~~d~i~~l~  190 (246)
T cd03237         159 RRFAENNEKTAFVVE------------HDIIMIDYLADRLIVFE  190 (246)
T ss_pred             HHHHHhcCCEEEEEe------------CCHHHHHHhCCEEEEEc
Confidence              222 366665533            33333334566666553

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=1.1e-24  Score=190.52  Aligned_cols=121  Identities=34%  Similarity=0.522  Sum_probs=100.7

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------h---hccccEEEEecCCcc
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------R---TVKRKTGFVAHSNVF   70 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~---~~~~~~~~v~q~~~~   70 (413)
                      +.|.||++..++||.+.++||||+|||||+++|.=+.-  +.+|+..+-|...+       +   ..|+.+|.|+|+-.+
T Consensus        16 q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l   93 (242)
T COG4161          16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL   93 (242)
T ss_pred             hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence            36889999999999999999999999999999975544  46788888765432       1   356789999999999


Q ss_pred             CCCCCHHHHHHHHH--------------------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           71 YLHLTVTETLVFIA--------------------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        71 ~~~lTv~e~l~f~~--------------------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      .|++||.|||.-+-                    .+|+.              .+||+|||+|+.+|++|++||||+.||
T Consensus        94 wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaald  173 (242)
T COG4161          94 WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD  173 (242)
T ss_pred             CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccC
Confidence            99999999985331                    11211              289999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          117 STIAKQI  123 (413)
Q Consensus       117 ~~~~~~i  123 (413)
                      ++...++
T Consensus       174 peitaqv  180 (242)
T COG4161         174 PEITAQI  180 (242)
T ss_pred             HHHHHHH
Confidence            9988887

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.91  E-value=1.6e-24  Score=226.61  Aligned_cols=156  Identities=23%  Similarity=0.256  Sum_probs=117.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCcc--C----
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVF--Y----   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~--~----   71 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++|++|+...  +    
T Consensus        18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   95 (490)
T PRK10938         18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGE   95 (490)
T ss_pred             ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccch
Confidence            7899999999999999999999999999999999987  467999998875421    233468999997542  1    


Q ss_pred             --CCCCHHHHHHHH-----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           72 --LHLTVTETLVFI-----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        72 --~~lTv~e~l~f~-----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                        ..+||+|++.+.           ..++++              +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~  175 (490)
T PRK10938         96 DDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA  175 (490)
T ss_pred             hhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence              157899876421           122221              28999999999999999999999999999998883


Q ss_pred             -----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          125 -----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       125 -----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                           +-++|.++..-            .|+.....+.||+++.+.+|....
T Consensus       176 ~~l~~~~~~g~tvii~------------tH~~~~~~~~~d~v~~l~~G~i~~  215 (490)
T PRK10938        176 ELLASLHQSGITLVLV------------LNRFDEIPDFVQFAGVLADCTLAE  215 (490)
T ss_pred             HHHHHHHhcCCeEEEE------------eCCHHHHHhhCCEEEEEECCEEEE
Confidence                 22346555442            244444456677777777776543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5e-24  Score=224.92  Aligned_cols=147  Identities=27%  Similarity=0.432  Sum_probs=117.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.++|.       +.++|++|+..+++.+||+|++.
T Consensus        16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~e~l~   86 (530)
T PRK15064         16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN-------ERLGKLRQDQFAFEEFTVLDTVI   86 (530)
T ss_pred             eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC-------CEEEEEeccCCcCCCCcHHHHHH
Confidence            78999999999999999999999999999999999874  6799999873       35899999998899999999986


Q ss_pred             HHH---------------------------------------------------HcCCc---------------hhHHHH
Q 048308           82 FIA---------------------------------------------------LFRLP---------------IKRVSR   95 (413)
Q Consensus        82 f~~---------------------------------------------------~~~~~---------------~krvsi   95 (413)
                      +..                                                   .++++               +||+.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~l  166 (530)
T PRK15064         87 MGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLL  166 (530)
T ss_pred             HhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHH
Confidence            521                                                   00111               189999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308           96 AQELLINPSLLFLDEPASGLDSTIAKQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus        96 a~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      |++|+.+|++++|||||+|||+.++..+.  +...|.+|..            +.|+.....+.||+++.+.+|..
T Consensus       167 A~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiii------------vsHd~~~~~~~~d~i~~l~~g~i  230 (530)
T PRK15064        167 AQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMII------------ISHDRHFLNSVCTHMADLDYGEL  230 (530)
T ss_pred             HHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEE------------EeCCHHHHHhhcceEEEEeCCEE
Confidence            99999999999999999999999999884  3334655544            23444334456777777777764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.91  E-value=6.6e-25  Score=193.14  Aligned_cols=96  Identities=31%  Similarity=0.501  Sum_probs=85.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.       +.++|++|       ++      
T Consensus        15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~~-------lS------   72 (144)
T cd03221          15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------VKIGYFEQ-------LS------   72 (144)
T ss_pred             EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------EEEEEEcc-------CC------
Confidence            6899999999999999999999999999999999987  46899999984       46899998       11      


Q ss_pred             HHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           82 FIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        82 f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                           ....||++||++|+.+|+++++||||+|||..++..+.
T Consensus        73 -----~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~  110 (144)
T cd03221          73 -----GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE  110 (144)
T ss_pred             -----HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence                 11249999999999999999999999999999999884

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=7.6e-25  Score=194.54  Aligned_cols=159  Identities=26%  Similarity=0.448  Sum_probs=125.4

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------------h----hccccEEE
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------------R----TVKRKTGF   63 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------------~----~~~~~~~~   63 (413)
                      ++||+||++.+.|+++.|+|.|||||||+|+||.=+.+  +..|.|.+||..+.             +    ..+...++
T Consensus        20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m   97 (256)
T COG4598          20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM   97 (256)
T ss_pred             hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence            47999999999999999999999999999999987765  47799999997531             1    12346899


Q ss_pred             EecCCccCCCCCHHHHHHHH--------------------HHcCC--------------chhHHHHHHHHhhCCCEEEEe
Q 048308           64 VAHSNVFYLHLTVTETLVFI--------------------ALFRL--------------PIKRVSRAQELLINPSLLFLD  109 (413)
Q Consensus        64 v~q~~~~~~~lTv~e~l~f~--------------------~~~~~--------------~~krvsia~~l~~~p~llllD  109 (413)
                      |+|+..+..++||.||..=+                    ++.++              ..||++|||+|+.+|+++++|
T Consensus        98 VFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD  177 (256)
T COG4598          98 VFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD  177 (256)
T ss_pred             hhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec
Confidence            99999999999999998532                    11111              128999999999999999999


Q ss_pred             CCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          110 EPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       110 EPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      ||||.||+...-+++     +-.+|++.-.-            .|++.-..+.+.+++-+-+|.+...+
T Consensus       178 EPTSALDPElVgEVLkv~~~LAeEgrTMv~V------------THEM~FAR~Vss~v~fLh~G~iEE~G  234 (256)
T COG4598         178 EPTSALDPELVGEVLKVMQDLAEEGRTMVVV------------THEMGFARDVSSHVIFLHQGKIEEEG  234 (256)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCeEEEE------------eeehhHHHhhhhheEEeecceecccC
Confidence            999999999887774     55689987663            34444456677788877777654433

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.91  E-value=4.5e-24  Score=226.50  Aligned_cols=146  Identities=27%  Similarity=0.335  Sum_probs=115.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.+++.       ..++||+|+..+++.+||+|++.
T Consensus        22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e~l~   92 (556)
T PRK11819         22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-------IKVGYLPQEPQLDPEKTVRENVE   92 (556)
T ss_pred             eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC-------CEEEEEecCCCCCCCCcHHHHHH
Confidence            78999999999999999999999999999999999874  6799998752       45999999999999999999997


Q ss_pred             HHHH-------------------------------------------------------cCCc-------------hhHH
Q 048308           82 FIAL-------------------------------------------------------FRLP-------------IKRV   93 (413)
Q Consensus        82 f~~~-------------------------------------------------------~~~~-------------~krv   93 (413)
                      +...                                                       ++++             +||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv  172 (556)
T PRK11819         93 EGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRV  172 (556)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHH
Confidence            6310                                                       0010             1899


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc--CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308           94 SRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS--EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus        94 sia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~--~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      .||++|+.+|++++|||||+|||+.++..+. ++.  +|.++..             .|+.....+.+|.++.+.+|..
T Consensus       173 ~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviii-------------sHd~~~~~~~~d~i~~l~~g~i  238 (556)
T PRK11819        173 ALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAV-------------THDRYFLDNVAGWILELDRGRG  238 (556)
T ss_pred             HHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEE-------------eCCHHHHHhhcCeEEEEeCCEE
Confidence            9999999999999999999999999999883 222  2333333             3444444556777777777764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.91  E-value=1.4e-24  Score=250.54  Aligned_cols=152  Identities=23%  Similarity=0.327  Sum_probs=121.6

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC----------------------------------------
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG----------------------------------------   40 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~----------------------------------------   40 (413)
                      ++|+|+|++++|||.+||+||||||||||+++|.|.+++.                                        
T Consensus      1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265       1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred             ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            3799999999999999999999999999999999998851                                        


Q ss_pred             ------------CeeEEEEECCcccC----hhccccEEEEecCCccCCCCCHHHHHHHHHH-------------------
Q 048308           41 ------------ETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTVTETLVFIAL-------------------   85 (413)
Q Consensus        41 ------------~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~-------------------   85 (413)
                                  +.+|+|.+||.++.    +..++.++||+|++.+| +.|++||+.+...                   
T Consensus      1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265       1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred             cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence                        15899999999874    25678899999999988 5799999988521                   


Q ss_pred             -cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh----cCCcEEEecCcchH
Q 048308           86 -FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN----SEGNSLHVGKGDGV  140 (413)
Q Consensus        86 -~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll----~~G~~v~~G~~~~~  140 (413)
                       .++|                  +||++|||||+.+|++|+||||||+||+.+...|.  +.    .+|+++..=+    
T Consensus      1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIa---- 1416 (1466)
T PTZ00265       1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA---- 1416 (1466)
T ss_pred             HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEe----
Confidence             0122                  28999999999999999999999999999998884  22    2466655422    


Q ss_pred             hHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308          141 MSYFVGIGFEPSAAMNPSDFLLDLAN  166 (413)
Q Consensus       141 ~~~f~~~g~~~p~~~n~ad~~~~~~~  166 (413)
                              |.... ..-||.++.+.+
T Consensus      1417 --------HRlst-i~~aD~Ivvl~~ 1433 (1466)
T PTZ00265       1417 --------HRIAS-IKRSDKIVVFNN 1433 (1466)
T ss_pred             --------chHHH-HHhCCEEEEEeC
Confidence                    22211 234788888887

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.91  E-value=5.9e-24  Score=218.95  Aligned_cols=141  Identities=28%  Similarity=0.421  Sum_probs=115.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccC---h-----hccccEEEEecCC--c
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLS---R-----TVKRKTGFVAHSN--V   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~---~-----~~~~~~~~v~q~~--~   69 (413)
                      +++||||++.|||+++|+|.|||||||+.++|.|.++.+  ..+|+|.++|.++.   +     ...+.+++++|++  .
T Consensus        24 ~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~s  103 (539)
T COG1123          24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTS  103 (539)
T ss_pred             eeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhh
Confidence            789999999999999999999999999999999998754  35799999998542   1     2345799999996  4


Q ss_pred             cCCCCCHHHHHHHHHHc--------------------CCc----------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           70 FYLHLTVTETLVFIALF--------------------RLP----------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        70 ~~~~lTv~e~l~f~~~~--------------------~~~----------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      +.|-+|+.+-+.=+...                    ++|                +||+.||++|+.+|++|++||||+
T Consensus       104 lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTT  183 (539)
T COG1123         104 LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT  183 (539)
T ss_pred             cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCcc
Confidence            56778887766432211                    111                189999999999999999999999


Q ss_pred             CCCHHHHHHH--------------------------------HHhcCCcEEEecCcchHhH
Q 048308          114 GLDSTIAKQI--------------------------------LLNSEGNSLHVGKGDGVMS  142 (413)
Q Consensus       114 gLD~~~~~~i--------------------------------~ll~~G~~v~~G~~~~~~~  142 (413)
                      +||+.++.+|                                ++|.+|++|..|+++++..
T Consensus       184 aLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence            9999999998                                4778888888888777643

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.91  E-value=6.8e-24  Score=224.96  Aligned_cols=146  Identities=27%  Similarity=0.327  Sum_probs=114.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..++  .+|+|.+++.       ..++||+|+..+++++||+|++.
T Consensus        20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e~i~   90 (552)
T TIGR03719        20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPG-------IKVGYLPQEPQLDPTKTVRENVE   90 (552)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC-------CEEEEEeccCCCCCCCcHHHHHH
Confidence            79999999999999999999999999999999999874  6799998752       46999999999999999999997


Q ss_pred             HHHH-------------------------------------------------------cCCc-------------hhHH
Q 048308           82 FIAL-------------------------------------------------------FRLP-------------IKRV   93 (413)
Q Consensus        82 f~~~-------------------------------------------------------~~~~-------------~krv   93 (413)
                      +...                                                       ++++             +||+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv  170 (552)
T TIGR03719        91 EGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRV  170 (552)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHH
Confidence            6310                                                       0010             1899


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh-c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308           94 SRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN-S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus        94 sia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll-~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      .||++|+.+|++++|||||++||+.++..+. ++ + ++.++..             .|+.....+.+|.++.+.+|..
T Consensus       171 ~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIii-------------sHd~~~~~~~~d~v~~l~~g~i  236 (552)
T TIGR03719       171 ALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAV-------------THDRYFLDNVAGWILELDRGRG  236 (552)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEE-------------eCCHHHHHhhcCeEEEEECCEE
Confidence            9999999999999999999999999999884 23 2 2333332             2333333455777777777653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.90  E-value=9e-24  Score=227.72  Aligned_cols=120  Identities=31%  Similarity=0.455  Sum_probs=104.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|++++|||+++|+||||||||||+|+|+|+++  +.+|+|.+||++...    .    .++.++|++|+..+++.
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~  100 (648)
T PRK10535         23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH  100 (648)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence            7999999999999999999999999999999999987  467999999987642    1    14579999999999999


Q ss_pred             CCHHHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +|+.||+.+....                   ++.              +||+.||++|+.+|++++|||||+|||..++
T Consensus       101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~  180 (648)
T PRK10535        101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG  180 (648)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence            9999999764321                   110              1899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      +.+
T Consensus       181 ~~l  183 (648)
T PRK10535        181 EEV  183 (648)
T ss_pred             HHH
Confidence            988

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.90  E-value=5.3e-24  Score=211.57  Aligned_cols=104  Identities=37%  Similarity=0.581  Sum_probs=89.8

Q ss_pred             EECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHHHHHHHHcC-Cc-----
Q 048308           18 ILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTETLVFIALFR-LP-----   89 (413)
Q Consensus        18 ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~-~~-----   89 (413)
                      |+||||||||||+|+|+|+.+  +.+|+|.++|++...  ..++.++|++|+..+++++||+||+.|....+ .+     
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            689999999999999999987  467999999987643  33567999999999999999999998864321 10     


Q ss_pred             ---------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           90 ---------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        90 ---------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                                                 +||++||++|+.+|++++|||||+|||+.++..+
T Consensus        79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l  139 (325)
T TIGR01187        79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM  139 (325)
T ss_pred             HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH
Confidence                                       1899999999999999999999999999999887

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.90  E-value=2.3e-24  Score=186.86  Aligned_cols=109  Identities=37%  Similarity=0.571  Sum_probs=92.8

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      |+|+|+++++||+++|+|+||||||||+++|+|..+  +.+|+|.++|.+...    ..++.++|++|++.+++.+||+|
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~   78 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE   78 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999999999999999999999999999987  478999999988753    35668999999999999999999


Q ss_pred             HHHH------HHHcCC------------------chhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           79 TLVF------IALFRL------------------PIKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        79 ~l~f------~~~~~~------------------~~krvsia~~l~~~p~llllDEPts  113 (413)
                      +..-      ...+++                  .+||+.||++|+.+|++++|||||+
T Consensus        79 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   79 NESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            8311      111111                  1289999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.90  E-value=1.1e-23  Score=217.83  Aligned_cols=111  Identities=29%  Similarity=0.396  Sum_probs=92.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|.+.         ++.+...+.+.+|++|++.
T Consensus        39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL~  107 (549)
T PRK13545         39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA---------LIAISSGLNGQLTGIENIE  107 (549)
T ss_pred             EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee---------eEEeccccCCCCcHHHHHH
Confidence            7999999999999999999999999999999999987  4679999998641         1223345567789999987


Q ss_pred             HHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 FIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +....                   ++.              +||+.||++|+.+|++++|||||+|||+.++..+
T Consensus       108 l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L  182 (549)
T PRK13545        108 LKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC  182 (549)
T ss_pred             hhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            63211                   111              1899999999999999999999999999999877

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=2e-24  Score=237.17  Aligned_cols=139  Identities=25%  Similarity=0.450  Sum_probs=118.9

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +||+|+|+++++|+.+||+|||||||||.+-+|-+.++  +..|.|.++|.++++    ..|++++.|.|++.+|. -|+
T Consensus      1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TI 1080 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTI 1080 (1228)
T ss_pred             hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccH
Confidence            48999999999999999999999999999999999987  478999999998753    56889999999999985 599


Q ss_pred             HHHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||+.|...-                    .+|                  +||++||||++.||++|+|||.||+||++
T Consensus      1081 rENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDse 1160 (1228)
T KOG0055|consen 1081 RENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSE 1160 (1228)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhh
Confidence            9999987111                    112                  28999999999999999999999999999


Q ss_pred             HHHHH-----------------------------HHhcCCcEEEecCcchHhH
Q 048308          119 IAKQI-----------------------------LLNSEGNSLHVGKGDGVMS  142 (413)
Q Consensus       119 ~~~~i-----------------------------~ll~~G~~v~~G~~~~~~~  142 (413)
                      +..-|                             .++++|+++..|+.++...
T Consensus      1161 SErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1161 SERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             hHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence            98776                             4677777777777666643

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=2.2e-24  Score=186.56  Aligned_cols=122  Identities=32%  Similarity=0.526  Sum_probs=107.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccC--hhccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLS--RTVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~--~~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|-|+|++|.+||++.||||||||||||+..+.|.+.+. ..+|++++|++.++  +..+|++|..+||+.+||+++|.+
T Consensus        17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~   96 (213)
T COG4136          17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQ   96 (213)
T ss_pred             EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccccc
Confidence            577999999999999999999999999999999988754 68899999999876  456889999999999999999999


Q ss_pred             HHHHHHHcCC-------------------------c-------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFRL-------------------------P-------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~~-------------------------~-------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ||.|+.--.+                         |       +-||++-|+|+..|+.++||||+|.||..-+.+.
T Consensus        97 Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qf  173 (213)
T COG4136          97 NLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF  173 (213)
T ss_pred             ceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHH
Confidence            9988631100                         1       1489999999999999999999999999988877

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=2.7e-24  Score=250.01  Aligned_cols=157  Identities=22%  Similarity=0.261  Sum_probs=121.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||++++|||.+||+|+||||||||+++|.|.++  +.+|+|.+||.++.+    ..|+.+++|+|++.+|+. |+|
T Consensus      1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr 1377 (1522)
T TIGR00957      1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLR 1377 (1522)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHH
Confidence            7999999999999999999999999999999999987  467999999998753    567889999999999975 999


Q ss_pred             HHHHH-H----------H-Hc-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVF-I----------A-LF-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f-~----------~-~~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |||.. .          + ..       ++|                  +||++|||+|+.+|++|+||||||+||+.+.
T Consensus      1378 ~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te 1457 (1522)
T TIGR00957      1378 MNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457 (1522)
T ss_pred             HHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence            99973 1          0 01       111                  2899999999999999999999999999999


Q ss_pred             HHHH--Hh--cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          121 KQIL--LN--SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       121 ~~i~--ll--~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      ..|.  +.  .+|+++..            +-|.... ...+|.++.+.+|++.+.++
T Consensus      1458 ~~Iq~~l~~~~~~~TvI~------------IAHRl~t-i~~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957      1458 NLIQSTIRTQFEDCTVLT------------IAHRLNT-IMDYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred             HHHHHHHHHHcCCCEEEE------------EecCHHH-HHhCCEEEEEECCEEEEECC
Confidence            8873  21  23555443            1222222 22367777777776655444

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.90  E-value=4e-24  Score=248.34  Aligned_cols=119  Identities=23%  Similarity=0.369  Sum_probs=103.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||++++|||.+||+|+||||||||+++|.|.++  +.+|+|.+||.++.+    ..++.+++|+|++.+|+. |+|
T Consensus      1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIr 1401 (1560)
T PTZ00243       1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVR 1401 (1560)
T ss_pred             eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHH
Confidence            7999999999999999999999999999999999997  467999999998753    567889999999999865 999


Q ss_pred             HHHHHHH------------HcC-------Cc------------------hhHHHHHHHHhhC-CCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIA------------LFR-------LP------------------IKRVSRAQELLIN-PSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~------------~~~-------~~------------------~krvsia~~l~~~-p~llllDEPtsgLD~~~  119 (413)
                      |||....            ..+       +|                  +||++|||+|+.+ |++|+||||||+||+.+
T Consensus      1402 eNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~t 1481 (1560)
T PTZ00243       1402 QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481 (1560)
T ss_pred             HHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHH
Confidence            9997521            001       11                  2899999999995 89999999999999999


Q ss_pred             HHHH
Q 048308          120 AKQI  123 (413)
Q Consensus       120 ~~~i  123 (413)
                      ...|
T Consensus      1482 e~~I 1485 (1560)
T PTZ00243       1482 DRQI 1485 (1560)
T ss_pred             HHHH
Confidence            9888

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.5e-23  Score=221.31  Aligned_cols=147  Identities=23%  Similarity=0.369  Sum_probs=112.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCc--cCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNV--FYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~--~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.       +.++|++|+..  +++.+||+|+
T Consensus       334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~  404 (530)
T PRK15064        334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-------ANIGYYAQDHAYDFENDLTLFDW  404 (530)
T ss_pred             eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEcccccccCCCCCcHHHH
Confidence            7899999999999999999999999999999999987  46799999873       46999999863  5567999999


Q ss_pred             HHHHH--------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--HhcC
Q 048308           80 LVFIA--------------LFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNSE  128 (413)
Q Consensus        80 l~f~~--------------~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~~  128 (413)
                      +.+..              .++++               +||+.||++|+.+|++++|||||+|||+.++..+.  +..-
T Consensus       405 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  484 (530)
T PRK15064        405 MSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY  484 (530)
T ss_pred             HHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence            86421              11221               18999999999999999999999999999998884  2222


Q ss_pred             CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          129 GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       129 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      +.++..            +.|+.....+.||+++.+.+|..
T Consensus       485 ~~tvi~------------vsHd~~~~~~~~d~i~~l~~g~i  513 (530)
T PRK15064        485 EGTLIF------------VSHDREFVSSLATRIIEITPDGV  513 (530)
T ss_pred             CCEEEE------------EeCCHHHHHHhCCEEEEEECCeE
Confidence            223333            22343334455677777766654

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.8e-24  Score=200.01  Aligned_cols=121  Identities=32%  Similarity=0.482  Sum_probs=96.8

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecC--CccCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHS--NVFYLH   73 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~--~~~~~~   73 (413)
                      +||+|+|++|+|||-.+|+|||||||||||++++|..++  .+|.+.+.|++..     ...|+.+|+|.-.  ..+.++
T Consensus        45 ~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p--ssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~  122 (257)
T COG1119          45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP--SSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVR  122 (257)
T ss_pred             eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC--CCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccc
Confidence            489999999999999999999999999999999999875  4799999888753     3467889998732  344456


Q ss_pred             CCHHHHHHHHH------------------------HcCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           74 LTVTETLVFIA------------------------LFRL--------------PIKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        74 lTv~e~l~f~~------------------------~~~~--------------~~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      .+|+|-+.-+.                        .+..              .+||+-|||||+++|.+||||||++||
T Consensus       123 ~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GL  202 (257)
T COG1119         123 ETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL  202 (257)
T ss_pred             cccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccC
Confidence            66666653110                        0000              128999999999999999999999999


Q ss_pred             CHHHHHHH
Q 048308          116 DSTIAKQI  123 (413)
Q Consensus       116 D~~~~~~i  123 (413)
                      |...+.++
T Consensus       203 Dl~~re~l  210 (257)
T COG1119         203 DLIAREQL  210 (257)
T ss_pred             ChHHHHHH
Confidence            99999777

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=4.5e-24  Score=200.65  Aligned_cols=141  Identities=29%  Similarity=0.408  Sum_probs=108.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---hhccccEEEEe-cCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---RTVKRKTGFVA-HSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~v~-q~~~~~~~lTv~   77 (413)
                      +++|||+++++|++++.+|||||||||+||+|+|.+.  +.+|.|.+||...-   +.+-+.+++|. |-..+.-.+-+.
T Consensus        39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence            5789999999999999999999999999999999987  47799999998542   23444566655 333333333355


Q ss_pred             HHHHHHH------------H-------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-
Q 048308           78 ETLVFIA------------L-------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI-  123 (413)
Q Consensus        78 e~l~f~~------------~-------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i-  123 (413)
                      |++....            .       +.+              .+.|+.+|.+|+++|++|||||||=|||..++..+ 
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir  196 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR  196 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence            5543321            1       111              12689999999999999999999999999999877 


Q ss_pred             -------------------------------HHhcCCcEEEecCcchHhHHH
Q 048308          124 -------------------------------LLNSEGNSLHVGKGDGVMSYF  144 (413)
Q Consensus       124 -------------------------------~ll~~G~~v~~G~~~~~~~~f  144 (413)
                                                     +++++|+.+|.|+.++...-|
T Consensus       197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f  248 (325)
T COG4586         197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF  248 (325)
T ss_pred             HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence                                           578899999999988876554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.1e-23  Score=220.45  Aligned_cols=155  Identities=23%  Similarity=0.337  Sum_probs=119.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCC---ccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSN---VFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~---~~~~~   73 (413)
                      +|+|+|+.+++||+++|+||||||||||+|+|+|..+  +.+|+|.++|.+...     ..++.++|++|+.   .++++
T Consensus       263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~  340 (491)
T PRK10982        263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY  340 (491)
T ss_pred             ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence            7899999999999999999999999999999999987  467999999976642     2245689999985   35777


Q ss_pred             CCHHHH-----HHHH--------------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           74 LTVTET-----LVFI--------------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        74 lTv~e~-----l~f~--------------------~~~~~~---------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      +|+.++     +.+.                    ..+++.               +||+.||++|+.+|++++|||||+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~  420 (491)
T PRK10982        341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR  420 (491)
T ss_pred             CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            877655     3211                    011110               189999999999999999999999


Q ss_pred             CCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          114 GLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      |||..++..+.     +..+|.++..-            .|+.+.....||+++.+.+|+..
T Consensus       421 gLD~~~~~~~~~~l~~l~~~~~tvi~v------------sHd~~~~~~~~d~v~~l~~g~i~  470 (491)
T PRK10982        421 GIDVGAKFEIYQLIAELAKKDKGIIII------------SSEMPELLGITDRILVMSNGLVA  470 (491)
T ss_pred             ccChhHHHHHHHHHHHHHHCCCEEEEE------------CCChHHHHhhCCEEEEEECCEEE
Confidence            99999999883     34467776663            34544455668888888777654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.90  E-value=9.1e-24  Score=192.03  Aligned_cols=96  Identities=30%  Similarity=0.432  Sum_probs=82.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+ +++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.        .++|++|+..    +       
T Consensus        15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~--------~i~~~~q~~~----L-------   72 (177)
T cd03222          15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGI--------TPVYKPQYID----L-------   72 (177)
T ss_pred             EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCE--------EEEEEcccCC----C-------
Confidence            56774 8999999999999999999999999999987  46799999985        2789988653    1       


Q ss_pred             HHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 FIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                          -...+||+++|++|+.+|++++|||||+|||..++..+
T Consensus        73 ----SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l  110 (177)
T cd03222          73 ----SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA  110 (177)
T ss_pred             ----CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence                11124999999999999999999999999999999887

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.89  E-value=1.1e-23  Score=244.45  Aligned_cols=118  Identities=25%  Similarity=0.384  Sum_probs=103.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+|+||||||||+++|.|.++   .+|+|.+||.++.+    ..++.++||+|++.+|+. |+|
T Consensus      1234 vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR 1309 (1490)
T TIGR01271      1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFR 1309 (1490)
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHH
Confidence            7999999999999999999999999999999999985   57999999998753    467889999999999975 999


Q ss_pred             HHHHHHH------------Hc-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIA------------LF-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~------------~~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      |||....            ..       ++|                  +||++|||+|+.+|+||+||||||+||..+.
T Consensus      1310 ~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te 1389 (1490)
T TIGR01271      1310 KNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL 1389 (1490)
T ss_pred             HHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence            9997421            01       111                  2899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      ..|
T Consensus      1390 ~~I 1392 (1490)
T TIGR01271      1390 QII 1392 (1490)
T ss_pred             HHH
Confidence            888

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.89  E-value=1.4e-23  Score=222.42  Aligned_cols=154  Identities=22%  Similarity=0.313  Sum_probs=117.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|+..+++. |++
T Consensus       338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~  414 (547)
T PRK10522        338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLG  414 (547)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhc
Confidence            7999999999999999999999999999999999987  477999999998753    456789999999887753 565


Q ss_pred             HH--------H-HHHHHcCC-------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh-
Q 048308           78 ET--------L-VFIALFRL-------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN-  126 (413)
Q Consensus        78 e~--------l-~f~~~~~~-------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll-  126 (413)
                      ||        + .+...+++                   .+||++|||+++.+|++++||||||+||+.++..+.  +. 
T Consensus       415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~  494 (547)
T PRK10522        415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP  494 (547)
T ss_pred             cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            54        1 11211111                   128999999999999999999999999999998873  22 


Q ss_pred             --c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          127 --S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       127 --~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                        + +|+++..=+            |.. .....+|+++.+.+|+..+
T Consensus       495 ~~~~~~~tvi~it------------H~~-~~~~~~d~i~~l~~G~i~e  529 (547)
T PRK10522        495 LLQEMGKTIFAIS------------HDD-HYFIHADRLLEMRNGQLSE  529 (547)
T ss_pred             HHHhCCCEEEEEE------------ech-HHHHhCCEEEEEECCEEEE
Confidence              2 466654422            221 1123478888888876653

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.5e-24  Score=215.05  Aligned_cols=120  Identities=26%  Similarity=0.452  Sum_probs=103.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+||||++.||+.+|++||||+||||+++.|-+..+  ..+|+|.++|+++..    ..|+.+|.||||..+|.+ |+
T Consensus       552 ~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI  628 (790)
T KOG0056|consen  552 PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TI  628 (790)
T ss_pred             ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-ee
Confidence            37999999999999999999999999999999999886  467999999998753    457789999999998854 88


Q ss_pred             HHHHHHHH------------H--------cCC------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIA------------L--------FRL------------------PIKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~------------~--------~~~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ..|++|+.            +        +..                  .+|||+|||+++++|.+++|||.||+||..
T Consensus       629 ~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~  708 (790)
T KOG0056|consen  629 LYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTN  708 (790)
T ss_pred             eeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCc
Confidence            88887641            1        111                  238999999999999999999999999999


Q ss_pred             HHHHH
Q 048308          119 IAKQI  123 (413)
Q Consensus       119 ~~~~i  123 (413)
                      +..+|
T Consensus       709 tER~I  713 (790)
T KOG0056|consen  709 TERAI  713 (790)
T ss_pred             cHHHH
Confidence            99888

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.89  E-value=2.8e-23  Score=204.13  Aligned_cols=119  Identities=27%  Similarity=0.461  Sum_probs=102.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCC--ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSN--VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~--~~~~   72 (413)
                      ++++||+++++||.++|+|+||||||||-.+|.++++   .+|+|.++|++++.       ..++.+..|+||+  .+.|
T Consensus       302 AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP  378 (534)
T COG4172         302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP  378 (534)
T ss_pred             EeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence            5799999999999999999999999999999999986   35999999998752       3567889999997  5789


Q ss_pred             CCCHHHHHHHHHHcCCc------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           73 HLTVTETLVFIALFRLP------------------------------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        73 ~lTv~e~l~f~~~~~~~------------------------------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      .+||.|-+.=.....-|                                    +||++|||+|+.+|++++||||||.||
T Consensus       379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD  458 (534)
T COG4172         379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD  458 (534)
T ss_pred             ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence            99999887644332211                                    289999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          117 STIAKQI  123 (413)
Q Consensus       117 ~~~~~~i  123 (413)
                      -+-+.+|
T Consensus       459 ~SVQaQv  465 (534)
T COG4172         459 RSVQAQV  465 (534)
T ss_pred             HHHHHHH
Confidence            9999887

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=1.3e-23  Score=187.06  Aligned_cols=102  Identities=36%  Similarity=0.657  Sum_probs=89.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +++++|+++++||+++|+|+||||||||+++|+|.++  +.+|+|.++|.+...    ..++.++|++|       ++  
T Consensus        14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------lS--   82 (157)
T cd00267          14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------LS--   82 (157)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEEEee-------CC--
Confidence            6899999999999999999999999999999999987  467999999986542    34567999999       11  


Q ss_pred             HHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           78 ETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        78 e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                               ...+||++||++++.+|++++|||||+|||..++..+
T Consensus        83 ---------~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l  119 (157)
T cd00267          83 ---------GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERL  119 (157)
T ss_pred             ---------HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence                     1234999999999999999999999999999999887

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.89  E-value=4.1e-23  Score=219.16  Aligned_cols=143  Identities=22%  Similarity=0.294  Sum_probs=111.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l   80 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.+++.       ..++|++|+. .+++.+||+|++
T Consensus       339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l  409 (556)
T PRK11819        339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEI  409 (556)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEeCchhhcCCCCCHHHHH
Confidence            7899999999999999999999999999999999987  46799998542       2599999986 678899999999


Q ss_pred             HHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc
Q 048308           81 VFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS  127 (413)
Q Consensus        81 ~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~  127 (413)
                      .+...                 +++.               +||+.||++|+.+|++++|||||+|||+.++..+. ++.
T Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  489 (556)
T PRK11819        410 SGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALL  489 (556)
T ss_pred             HhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            76421                 1111               18999999999999999999999999999999984 222


Q ss_pred             --CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308          128 --EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN  166 (413)
Q Consensus       128 --~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~  166 (413)
                        .|.++..             .|+.......||+++.+.+
T Consensus       490 ~~~~tvi~v-------------tHd~~~~~~~~d~i~~l~~  517 (556)
T PRK11819        490 EFPGCAVVI-------------SHDRWFLDRIATHILAFEG  517 (556)
T ss_pred             hCCCeEEEE-------------ECCHHHHHHhCCEEEEEEC
Confidence              2433322             2343333455677766654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.89  E-value=4e-23  Score=219.05  Aligned_cols=143  Identities=24%  Similarity=0.327  Sum_probs=112.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l   80 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|..+  +.+|+|.+++.       ..++|++|+. .+++.+||+|++
T Consensus       337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l  407 (552)
T TIGR03719       337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEI  407 (552)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc-------eEEEEEeCCccccCCCCcHHHHH
Confidence            7899999999999999999999999999999999987  46799998542       2599999986 478889999999


Q ss_pred             HHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hh
Q 048308           81 VFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LN  126 (413)
Q Consensus        81 ~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll  126 (413)
                      .+...                 +++.               +||+.||++|+.+|++++|||||+|||..++..+.  +.
T Consensus       408 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  487 (552)
T TIGR03719       408 SGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALL  487 (552)
T ss_pred             HhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            76421                 1111               18999999999999999999999999999999984  22


Q ss_pred             c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308          127 S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN  166 (413)
Q Consensus       127 ~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~  166 (413)
                      . .|.++ .            +.|+.....+.||+++.+..
T Consensus       488 ~~~~~vi-i------------vsHd~~~~~~~~d~i~~l~~  515 (552)
T TIGR03719       488 EFAGCAV-V------------ISHDRWFLDRIATHILAFEG  515 (552)
T ss_pred             HCCCeEE-E------------EeCCHHHHHHhCCEEEEEEC
Confidence            2 24333 2            23444334456777777654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.89  E-value=2e-23  Score=241.00  Aligned_cols=119  Identities=27%  Similarity=0.421  Sum_probs=102.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC-CcccCh----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-NNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|++++|||+++|+||||||||||+++|+|.++  +.+|+|.++ |.++.+    .+++.++||+|++.+|+ .|+
T Consensus       400 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI  476 (1466)
T PTZ00265        400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSI  476 (1466)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccH
Confidence            7999999999999999999999999999999999997  477999995 565532    35678999999999887 599


Q ss_pred             HHHHHHHHH----------------------------------------------------------------------c
Q 048308           77 TETLVFIAL----------------------------------------------------------------------F   86 (413)
Q Consensus        77 ~e~l~f~~~----------------------------------------------------------------------~   86 (413)
                      +||+.+...                                                                      .
T Consensus       477 ~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~  556 (1466)
T PTZ00265        477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV  556 (1466)
T ss_pred             HHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHh
Confidence            999988420                                                                      0


Q ss_pred             -------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           87 -------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        87 -------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                             ++|                  +||++|||+|+.+|++|+||||||+||+.++..+
T Consensus       557 ~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i  618 (1466)
T PTZ00265        557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV  618 (1466)
T ss_pred             CcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence                   111                  1899999999999999999999999999999888

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=6.6e-23  Score=183.58  Aligned_cols=120  Identities=29%  Similarity=0.412  Sum_probs=105.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh---ccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT---VKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      ++.++||++.+||++-|.||||||||||||+|+|+.+  +.+|+|.++|.+.+..   +++..-|...++-+=+.+||.|
T Consensus        17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~E   94 (209)
T COG4133          17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALE   94 (209)
T ss_pred             eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHH
Confidence            6789999999999999999999999999999999998  4779999999887643   3356778888888889999999


Q ss_pred             HHHHHHHcCCc------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFRLP------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~~~------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ||.|-....-+                              +|||+|||-+++.+++-+||||+++||......+
T Consensus        95 NL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l  169 (209)
T COG4133          95 NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL  169 (209)
T ss_pred             HHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence            99997553221                              1899999999999999999999999999988776

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=2.5e-24  Score=193.57  Aligned_cols=160  Identities=23%  Similarity=0.315  Sum_probs=124.0

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC-cccCh-----hccccEEEEecCCccCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN-NPLSR-----TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-~~~~~-----~~~~~~~~v~q~~~~~~~l   74 (413)
                      ++|+|+|+++.|||+-+|+|||||||||++++|+|..+  +.+|++.++| .++..     ..+..+|--+|.+..|+++
T Consensus        19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l   96 (249)
T COG4674          19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL   96 (249)
T ss_pred             eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc
Confidence            36899999999999999999999999999999999987  4679999999 44432     2355688999999999999


Q ss_pred             CHHHHHHHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           75 TVTETLVFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        75 Tv~e~l~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      ||+|||..+.....+                                         +|++.|+.-++.+|++|++|||++
T Consensus        97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvA  176 (249)
T COG4674          97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA  176 (249)
T ss_pred             cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccC
Confidence            999999987532111                                         179999999999999999999999


Q ss_pred             CCCHHHHHHH----HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          114 GLDSTIAKQI----LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       114 gLD~~~~~~i----~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      |+--+...+.    .-++.++.|.-            +.|++.-....||++..+..|.+-..++
T Consensus       177 GMTd~Et~~taeLl~~la~~hsilV------------VEHDM~Fvr~~A~~VTVlh~G~VL~EGs  229 (249)
T COG4674         177 GMTDAETEKTAELLKSLAGKHSILV------------VEHDMGFVREIADKVTVLHEGSVLAEGS  229 (249)
T ss_pred             CCcHHHHHHHHHHHHHHhcCceEEE------------EeccHHHHHHhhheeEEEeccceeeccc
Confidence            9977666555    23345555544            2234433445678888887776654443

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=3.5e-23  Score=188.83  Aligned_cols=121  Identities=25%  Similarity=0.343  Sum_probs=103.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hcc--ccEEEEecCC--ccCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVK--RKTGFVAHSN--VFYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~--~~~~~v~q~~--~~~~~lT   75 (413)
                      +|+++|+++..|+++.|+|.||||||||+|+|+|.+.  ..+|.|.++|.++++  ..+  ..++-|+|++  -..+.+|
T Consensus        21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT   98 (263)
T COG1101          21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT   98 (263)
T ss_pred             HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence            7899999999999999999999999999999999987  478999999998864  222  2467799986  5689999


Q ss_pred             HHHHHHHHHHcCCc-----------------------------------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           76 VTETLVFIALFRLP-----------------------------------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        76 v~e~l~f~~~~~~~-----------------------------------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      ++||+..+...+..                                         +|-++++.+.++.|++|+|||-|++
T Consensus        99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA  178 (263)
T COG1101          99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA  178 (263)
T ss_pred             HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence            99999877543110                                         1568889999999999999999999


Q ss_pred             CCHHHHHHHH
Q 048308          115 LDSTIAKQIL  124 (413)
Q Consensus       115 LD~~~~~~i~  124 (413)
                      |||.++..|+
T Consensus       179 LDPkta~~vm  188 (263)
T COG1101         179 LDPKTAEFVM  188 (263)
T ss_pred             CCcchHHHHH
Confidence            9999999884

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.88  E-value=5e-23  Score=215.34  Aligned_cols=155  Identities=24%  Similarity=0.341  Sum_probs=112.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCC--CC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYL--HL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~--~l   74 (413)
                      +|+|+|+.+++||+++|+||||||||||+|+|+|..++ ..+|+|.++|++...     ..++.++|++|+..++.  ..
T Consensus       275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  353 (490)
T PRK10938        275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST  353 (490)
T ss_pred             EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC
Confidence            78999999999999999999999999999999997541 247999999976421     23457999999865533  35


Q ss_pred             CHHHHHHHHH-----------------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           75 TVTETLVFIA-----------------------LFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        75 Tv~e~l~f~~-----------------------~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      |++|++.+..                       .++++               +||++||++|+.+|++++|||||+|||
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD  433 (490)
T PRK10938        354 SVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD  433 (490)
T ss_pred             cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence            6776654320                       01111               189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcCCc-EEEecCcchHhHHHHhcCCCCCCCCC-hhHHHHHhhCCcc
Q 048308          117 STIAKQIL-----LNSEGN-SLHVGKGDGVMSYFVGIGFEPSAAMN-PSDFLLDLANGVV  169 (413)
Q Consensus       117 ~~~~~~i~-----ll~~G~-~v~~G~~~~~~~~f~~~g~~~p~~~n-~ad~~~~~~~~~~  169 (413)
                      +.++..+.     +..+|. ++..            ..|+.....+ .+|.++.+.+|+.
T Consensus       434 ~~~~~~l~~~L~~l~~~~~~tvii------------vsHd~~~~~~~~~d~v~~l~~G~i  481 (490)
T PRK10938        434 PLNRQLVRRFVDVLISEGETQLLF------------VSHHAEDAPACITHRLEFVPDGDI  481 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEE------------EecchhhhhhhhheeEEEecCCce
Confidence            99999984     223443 2433            2344444444 3677766666643

>PRK13409 putative ATPase RIL; Provisional

Probab=99.88  E-value=7.8e-23  Score=217.65  Aligned_cols=122  Identities=29%  Similarity=0.351  Sum_probs=102.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      .|+++|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++         ..++|++|+..+.+++||+|++.
T Consensus       354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~  422 (590)
T PRK13409        354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---------LKISYKPQYIKPDYDGTVEDLLR  422 (590)
T ss_pred             EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe---------eeEEEecccccCCCCCcHHHHHH
Confidence            3788999999999999999999999999999999987  467999886         14899999988888999999997


Q ss_pred             HHHH--------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hhc-
Q 048308           82 FIAL--------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNS-  127 (413)
Q Consensus        82 f~~~--------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~-  127 (413)
                      +...              +++.              +||++||++|+.+|++++|||||+|||+.++..+.     +.. 
T Consensus       423 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~  502 (590)
T PRK13409        423 SITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE  502 (590)
T ss_pred             HHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            6421              1111              18999999999999999999999999999999883     222 


Q ss_pred             CCcEEEe
Q 048308          128 EGNSLHV  134 (413)
Q Consensus       128 ~G~~v~~  134 (413)
                      +|.++..
T Consensus       503 ~g~tvii  509 (590)
T PRK13409        503 REATALV  509 (590)
T ss_pred             CCCEEEE
Confidence            3666655

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.88  E-value=1.1e-22  Score=215.85  Aligned_cols=153  Identities=18%  Similarity=0.250  Sum_probs=118.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||.++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|+..+|.. |++
T Consensus       357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~  433 (555)
T TIGR01194       357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIG  433 (555)
T ss_pred             eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhh
Confidence            7999999999999999999999999999999999987  477999999988753    456789999999877754 666


Q ss_pred             HHHH----------HHHHcC-------Cc-------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--H
Q 048308           78 ETLV----------FIALFR-------LP-------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--L  125 (413)
Q Consensus        78 e~l~----------f~~~~~-------~~-------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--l  125 (413)
                      ||..          .....+       +|             +||++|||+++.+|++++|||||++||+.+...+.  +
T Consensus       434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            6641          111111       11             28999999999999999999999999999998873  2


Q ss_pred             ---h-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          126 ---N-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       126 ---l-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                         + .+|+++..=+            |+.. ....||.++.+.+|++.
T Consensus       514 ~~~~~~~~~tiiiis------------H~~~-~~~~~d~i~~l~~G~i~  549 (555)
T TIGR01194       514 LPDLKRQGKTIIIIS------------HDDQ-YFELADQIIKLAAGCIV  549 (555)
T ss_pred             HHHHHhCCCEEEEEe------------ccHH-HHHhCCEEEEEECCEEE
Confidence               2 3577766533            2222 12457777777776543

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.88  E-value=9.1e-23  Score=226.24  Aligned_cols=120  Identities=31%  Similarity=0.505  Sum_probs=108.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +++++|+.+++||..+++|+|||||||++|+|.|..+  +.+|++.++|+....     ..++.+||+||+|.+.+.+|.
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~  657 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG  657 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence            4789999999999999999999999999999999987  477999999987742     256789999999999999999


Q ss_pred             HHHHHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ||+|.+.++++. +                                +||+++|.+++.+|++++|||||+|+|+.++..+
T Consensus       658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l  737 (885)
T KOG0059|consen  658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL  737 (885)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH
Confidence            999999887753 2                                1799999999999999999999999999999887

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.88  E-value=4.8e-22  Score=180.58  Aligned_cols=116  Identities=28%  Similarity=0.353  Sum_probs=88.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||||++.+      .+|++.++|... ...++.++|++|          .|.+.
T Consensus        10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q----------~~~l~   72 (176)
T cd03238          10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ----------LQFLI   72 (176)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH----------HHHHH
Confidence            7899999999999999999999999999999953      368888887732 222345889887          23332


Q ss_pred             HHHH----cCC--------chhHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           82 FIAL----FRL--------PIKRVSRAQELLIN--PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        82 f~~~----~~~--------~~krvsia~~l~~~--p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ....    ...        .+||+++|++|+.+  |++++|||||+|||..++..+.     +.++|+++..
T Consensus        73 ~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIi  144 (176)
T cd03238          73 DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL  144 (176)
T ss_pred             HcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            1110    110        13899999999999  9999999999999999999883     2235776655

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.88  E-value=6e-23  Score=197.32  Aligned_cols=129  Identities=26%  Similarity=0.367  Sum_probs=98.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE-----------ECCcccChh----cc--ccEEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID-----------YNNNPLSRT----VK--RKTGFV   64 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~----~~--~~~~~v   64 (413)
                      +|+|+| .+++||+++|+||||||||||+|+|+|.++  +.+|+|.           ++|.+....    .+  ..++|+
T Consensus        16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~   92 (255)
T cd03236          16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK   92 (255)
T ss_pred             hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence            689999 599999999999999999999999999987  4679996           777765321    11  236888


Q ss_pred             ecCCccCCCCCHHHHHHHHH--------------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           65 AHSNVFYLHLTVTETLVFIA--------------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        65 ~q~~~~~~~lTv~e~l~f~~--------------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      +|+...++. ++.+++.+..              .+++.              +||++||++|+.+|+++++||||+|||
T Consensus        93 ~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD  171 (255)
T cd03236          93 PQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD  171 (255)
T ss_pred             cchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence            888777663 6666654321              11111              289999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcCCcEEEe
Q 048308          117 STIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus       117 ~~~~~~i~-----ll~~G~~v~~  134 (413)
                      +.++..+.     +..+|+++..
T Consensus       172 ~~~~~~l~~~l~~l~~~~~tIIi  194 (255)
T cd03236         172 IKQRLNAARLIRELAEDDNYVLV  194 (255)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEE
Confidence            99988773     2235666554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.87  E-value=1.5e-22  Score=203.94  Aligned_cols=141  Identities=34%  Similarity=0.523  Sum_probs=115.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .+|+|+||.+++||.++|+||||||||||.|+|.|..+  +.+|.|.+||.+++.    ..-+.+||.||+-.+|+. ||
T Consensus       350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TI  426 (580)
T COG4618         350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TI  426 (580)
T ss_pred             cceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cH
Confidence            37999999999999999999999999999999999987  478999999988753    456789999999998865 99


Q ss_pred             HHHHH-HH-----------HH--------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLV-FI-----------AL--------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~-f~-----------~~--------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      .||+. |.           ++        +++|                  +||+.+||+|-.||.+++||||-|+||+.
T Consensus       427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~  506 (580)
T COG4618         427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE  506 (580)
T ss_pred             HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence            99983 21           11        1233                  28999999999999999999999999997


Q ss_pred             HHHHH------------------------------HHhcCCcEEEecCcchHhHHH
Q 048308          119 IAKQI------------------------------LLNSEGNSLHVGKGDGVMSYF  144 (413)
Q Consensus       119 ~~~~i------------------------------~ll~~G~~v~~G~~~~~~~~f  144 (413)
                      -...+                              ++|++|++--||+.+++....
T Consensus       507 GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~  562 (580)
T COG4618         507 GEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKV  562 (580)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence            76554                              456666666666666665554

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=3.2e-23  Score=186.69  Aligned_cols=173  Identities=27%  Similarity=0.351  Sum_probs=136.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|..+++|.+++++|||||||||||.+++++.+  ..+|+|+++|.++..    ...++++..-|+..+...+||+
T Consensus        16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~   93 (252)
T COG4604          16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVR   93 (252)
T ss_pred             eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHH
Confidence            7899999999999999999999999999999999886  578999999998743    4556788889999988999999


Q ss_pred             HHHHHHHHc---------------------CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           78 ETLVFIALF---------------------RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        78 e~l~f~~~~---------------------~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      |-+.|...-                     .+              .+||.-||..++.+.+.++||||.++||...+.+
T Consensus        94 dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~  173 (252)
T COG4604          94 DLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ  173 (252)
T ss_pred             HHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHH
Confidence            999885311                     11              1289999999999999999999999999999988


Q ss_pred             HH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHH
Q 048308          123 IL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAY  188 (413)
Q Consensus       123 i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (413)
                      ++     +.. -|+++-.            +=|+..-....+|+++.+.+|++...+++++....+-+.+-|
T Consensus       174 iMk~Lrrla~el~Ktivi------------VlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiy  233 (252)
T COG4604         174 IMKILRRLADELGKTIVV------------VLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY  233 (252)
T ss_pred             HHHHHHHHHHHhCCeEEE------------EEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHh
Confidence            85     222 2666543            235555566779999999999887666554433333343333

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.87  E-value=4e-22  Score=215.27  Aligned_cols=123  Identities=22%  Similarity=0.321  Sum_probs=102.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||.++|+||||||||||+|+|+|.+++  .+|+|.+++       ++.++||+|++.+++. |++||+.
T Consensus       467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~  536 (659)
T TIGR00954       467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQII  536 (659)
T ss_pred             eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHh
Confidence            78999999999999999999999999999999999863  569998764       4579999999988776 9999997


Q ss_pred             HHHH--------------------cCC-----------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           82 FIAL--------------------FRL-----------------------PIKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        82 f~~~--------------------~~~-----------------------~~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +...                    +++                       .+||++|||+|+.+|++++|||||+|||+.
T Consensus       537 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~  616 (659)
T TIGR00954       537 YPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD  616 (659)
T ss_pred             cCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence            6310                    011                       018999999999999999999999999999


Q ss_pred             HHHHHH--HhcCCcEEEe
Q 048308          119 IAKQIL--LNSEGNSLHV  134 (413)
Q Consensus       119 ~~~~i~--ll~~G~~v~~  134 (413)
                      +...+.  +.+.|+++..
T Consensus       617 ~~~~l~~~l~~~~~tvI~  634 (659)
T TIGR00954       617 VEGYMYRLCREFGITLFS  634 (659)
T ss_pred             HHHHHHHHHHHcCCEEEE
Confidence            999884  3344665544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.87  E-value=1.4e-22  Score=218.18  Aligned_cols=114  Identities=26%  Similarity=0.375  Sum_probs=97.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l   80 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.+ |.+      ..++|++|+. .+++++||.|++
T Consensus       334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~------~~i~y~~q~~~~l~~~~tv~e~l  404 (635)
T PRK11147        334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK------LEVAYFDQHRAELDPEKTVMDNL  404 (635)
T ss_pred             EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC------cEEEEEeCcccccCCCCCHHHHH
Confidence            7899999999999999999999999999999999986  46799998 432      2599999975 578899999999


Q ss_pred             HHHHH-----------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           81 VFIAL-----------------FRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        81 ~f~~~-----------------~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .+...                 +.+.               ++|+.||++|+.+|++|||||||+|||..++..+.
T Consensus       405 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~  480 (635)
T PRK11147        405 AEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE  480 (635)
T ss_pred             HhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence            76421                 0111               17999999999999999999999999999998883

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=2.6e-22  Score=190.24  Aligned_cols=107  Identities=32%  Similarity=0.440  Sum_probs=84.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++||||++++||+++|+|+||||||||-|+|.|+.+  +.+|+|.++|++.....         .+.  ..-.|.|.|.
T Consensus        28 avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~~---------~~~--~~~~v~elL~   94 (268)
T COG4608          28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKLS---------KEE--RRERVLELLE   94 (268)
T ss_pred             EecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhcc---------hhH--HHHHHHHHHH
Confidence            6899999999999999999999999999999999997  57899999998754321         000  0001222222


Q ss_pred             HHHHcCC---------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           82 FIALFRL---------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        82 f~~~~~~---------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                         ..++               .+||+.|||||+.+|+++++|||+|.||.+.+.+++
T Consensus        95 ---~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl  149 (268)
T COG4608          95 ---KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL  149 (268)
T ss_pred             ---HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH
Confidence               2222               238999999999999999999999999999999883

>PLN03232 ABC transporter C family member; Provisional

Probab=99.87  E-value=2.2e-22  Score=233.77  Aligned_cols=111  Identities=32%  Similarity=0.500  Sum_probs=94.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||.++|+||||||||||+++|.|.+++  .+|.+.        ..++.++||+|++.+++ -|+|||+.
T Consensus       632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~--------~~~~~Iayv~Q~p~Lf~-gTIreNI~  700 (1495)
T PLN03232        632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV--------VIRGSVAYVPQVSWIFN-ATVRENIL  700 (1495)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE--------EecCcEEEEcCcccccc-ccHHHHhh
Confidence            79999999999999999999999999999999999874  556542        23567999999999885 59999999


Q ss_pred             HHHHc-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 FIALF-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 f~~~~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |....                   .+|                  +||++||||+..+|++++||||||+||+.++.++
T Consensus       701 fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I  779 (1495)
T PLN03232        701 FGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV  779 (1495)
T ss_pred             cCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence            85311                   111                  2899999999999999999999999999998876

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=5.8e-22  Score=176.67  Aligned_cols=120  Identities=27%  Similarity=0.428  Sum_probs=99.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h--hccccEEEEecCCc--cCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R--TVKRKTGFVAHSNV--FYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~--~~~~~~~~v~q~~~--~~~~lT   75 (413)
                      +++.|||+++.|+.+|++|.||||||||.|+|+|..+  +.+|+|.+||+++.  +  ...+.+-.++||+.  +.|.+.
T Consensus        28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~  105 (267)
T COG4167          28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR  105 (267)
T ss_pred             cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence            5788999999999999999999999999999999998  58899999999874  1  22345788999874  556666


Q ss_pred             HHHHHHHHHHcCC-----------------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           76 VTETLVFIALFRL-----------------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        76 v~e~l~f~~~~~~-----------------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +.+-|....++..                                   .+|||++||||+.+|++++.||...+||...+
T Consensus       106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smr  185 (267)
T COG4167         106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR  185 (267)
T ss_pred             hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHH
Confidence            6666665443321                                   12899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      .++
T Consensus       186 sQl  188 (267)
T COG4167         186 SQL  188 (267)
T ss_pred             HHH
Confidence            887

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.87  E-value=5e-22  Score=230.58  Aligned_cols=110  Identities=27%  Similarity=0.454  Sum_probs=97.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+|||||||||||++|+|..+  +.+|+|.++|         .++||+|++.+++ .||+||+.
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~-~Ti~eNI~  508 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMP-GTIKDNII  508 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCC-ccHHHHHH
Confidence            6899999999999999999999999999999999987  4679999987         3999999998886 49999998


Q ss_pred             HHHHc------------C-------C------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 FIALF------------R-------L------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 f~~~~------------~-------~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |....            .       +                  .+||++|||+++.+|++++|||||+|||+.++.++
T Consensus       509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i  587 (1490)
T TIGR01271       509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI  587 (1490)
T ss_pred             hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            74210            0       0                  02899999999999999999999999999999877

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=4.6e-22  Score=214.09  Aligned_cols=113  Identities=28%  Similarity=0.421  Sum_probs=93.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC--ccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN--VFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|..+  +.+|+|.+++.       ..++|++|+.  .+.+..|+.++
T Consensus       327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~~  397 (638)
T PRK10636        327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-------IKLGYFAQHQLEFLRADESPLQH  397 (638)
T ss_pred             eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC-------EEEEEecCcchhhCCccchHHHH
Confidence            7899999999999999999999999999999999987  46799998742       2589999974  34566788877


Q ss_pred             HHHH-------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFI-------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~-------------~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.-.             ..++++               ++|+.||++|+.+|++|+|||||+|||..++..+
T Consensus       398 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l  469 (638)
T PRK10636        398 LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL  469 (638)
T ss_pred             HHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence            5311             111221               1899999999999999999999999999999887

>PLN03130 ABC transporter C family member; Provisional

Probab=99.86  E-value=4.3e-22  Score=231.96  Aligned_cols=110  Identities=29%  Similarity=0.509  Sum_probs=96.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCee-EEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETR-GNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~-G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +|+|+|+++++||.++|+||+|||||||+++|.|.++  +.+ |+|.+         ++.++||+|++.+++ .|+|||+
T Consensus       632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l---------~~~Iayv~Q~p~Lfn-gTIreNI  699 (1622)
T PLN03130        632 TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI---------RGTVAYVPQVSWIFN-ATVRDNI  699 (1622)
T ss_pred             eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------cCeEEEEcCccccCC-CCHHHHH
Confidence            7999999999999999999999999999999999987  467 89875         446999999998875 6999999


Q ss_pred             HHHHHc-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIALF-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~~~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .|....                   .+|                  +||++||||+..+|++++||||||+||+.++.++
T Consensus       700 ~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I  779 (1622)
T PLN03130        700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV  779 (1622)
T ss_pred             hCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence            875211                   111                  2899999999999999999999999999998776

>PLN03073 ABC transporter F family; Provisional

Probab=99.86  E-value=1.2e-21  Score=212.39  Aligned_cols=144  Identities=23%  Similarity=0.375  Sum_probs=105.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|.++  +.+|+|.+++.       ..++|++|+.  .+.+++.++..
T Consensus       524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-------~~igyv~Q~~--~~~l~~~~~~~  592 (718)
T PLN03073        524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-------VRMAVFSQHH--VDGLDLSSNPL  592 (718)
T ss_pred             eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc-------eeEEEEeccc--cccCCcchhHH
Confidence            7899999999999999999999999999999999987  46799998752       3599999975  23445544422


Q ss_pred             H--H---------------HHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc
Q 048308           82 F--I---------------ALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS  127 (413)
Q Consensus        82 f--~---------------~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~  127 (413)
                      .  .               ..+++.               +||++||++|+.+|++|+|||||+|||..++..++  +..
T Consensus       593 ~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~  672 (718)
T PLN03073        593 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVL  672 (718)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            1  1               111111               18999999999999999999999999999998874  222


Q ss_pred             -CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          128 -EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       128 -~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                       +|.++..             .|+.....+.||.++.+.+|.+
T Consensus       673 ~~gtvIiv-------------SHd~~~i~~~~drv~~l~~G~i  702 (718)
T PLN03073        673 FQGGVLMV-------------SHDEHLISGSVDELWVVSEGKV  702 (718)
T ss_pred             cCCEEEEE-------------ECCHHHHHHhCCEEEEEECCEE
Confidence             4533333             2333333344666666666654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.86  E-value=8.3e-22  Score=229.29  Aligned_cols=110  Identities=26%  Similarity=0.467  Sum_probs=96.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+++|+|.++  +.+|+|.++|         .++||+|++.++ +.|++||+.
T Consensus       653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g---------~i~yv~Q~~~l~-~~Ti~eNI~  720 (1522)
T TIGR00957       653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG---------SVAYVPQQAWIQ-NDSLRENIL  720 (1522)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC---------EEEEEcCCcccc-CCcHHHHhh
Confidence            7999999999999999999999999999999999987  4679999987         499999998775 579999998


Q ss_pred             HHHH------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 FIAL------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 f~~~------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |...            +.       +|                  +||++|||++..+|++++||||||+||+.++..+
T Consensus       721 ~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i  799 (1522)
T TIGR00957       721 FGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI  799 (1522)
T ss_pred             cCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence            7411            00       11                  2899999999999999999999999999999887

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.8e-22  Score=198.14  Aligned_cols=120  Identities=32%  Similarity=0.483  Sum_probs=103.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|+++++|+.++++||||+||||++++|-+.++  ..+|.|.++|+.+..    ..++-+|.||||..+|. -|.
T Consensus       277 ~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN-Dti  353 (497)
T COG5265         277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN-DTI  353 (497)
T ss_pred             hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh-hhH
Confidence            48999999999999999999999999999999999987  477999999998743    45678999999998874 488


Q ss_pred             HHHHHHHHH---------------c-----CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIAL---------------F-----RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~---------------~-----~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ..|+.++.-               .     .+|                  +|||+|||+++++|+++++||.||.||..
T Consensus       354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~  433 (497)
T COG5265         354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH  433 (497)
T ss_pred             HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence            888876410               0     112                  38999999999999999999999999999


Q ss_pred             HHHHH
Q 048308          119 IAKQI  123 (413)
Q Consensus       119 ~~~~i  123 (413)
                      +...+
T Consensus       434 te~~i  438 (497)
T COG5265         434 TEQAI  438 (497)
T ss_pred             HHHHH
Confidence            99888

>PTZ00243 ABC transporter; Provisional

Probab=99.85  E-value=2.9e-21  Score=224.67  Aligned_cols=110  Identities=26%  Similarity=0.451  Sum_probs=94.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+|||||||||||++|+|.++  +.+|+|.++         +.++|++|++.++ +.||+||+.
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~-~~Tv~enI~  742 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIM-NATVRGNIL  742 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccC-CCcHHHHHH
Confidence            6899999999999999999999999999999999987  467999763         4699999998876 579999998


Q ss_pred             HHHH------------cC-------C------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 FIAL------------FR-------L------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 f~~~------------~~-------~------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |...            ++       +                  .+||++|||+|+.+|++++|||||++||+.++.++
T Consensus       743 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i  821 (1560)
T PTZ00243        743 FFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV  821 (1560)
T ss_pred             cCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence            7310            10       0                  02899999999999999999999999999988766

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=6.6e-21  Score=177.62  Aligned_cols=135  Identities=23%  Similarity=0.294  Sum_probs=106.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+||||++++||.++|+|+||||||||||+|+|.++  +.+|+|.++|+....        ..-.--+-|.+|.+||+.
T Consensus        42 aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt~G~v~v~G~v~~l--------i~lg~Gf~pelTGreNi~  111 (249)
T COG1134          42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PTSGKVKVTGKVAPL--------IELGAGFDPELTGRENIY  111 (249)
T ss_pred             EecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CCCceEEEcceEehh--------hhcccCCCcccchHHHHH
Confidence            7999999999999999999999999999999999998  478999999874321        111223457899999998


Q ss_pred             HHHHc-CCch--------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-----
Q 048308           82 FIALF-RLPI--------------------------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQI-----  123 (413)
Q Consensus        82 f~~~~-~~~~--------------------------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i-----  123 (413)
                      +...+ ++..                                -|+.++.+...+|++|++||-.+--|+.-+++-     
T Consensus       112 l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~  191 (249)
T COG1134         112 LRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLN  191 (249)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHH
Confidence            86543 2211                                399999999999999999999999999888665     


Q ss_pred             --------------------------HHhcCCcEEEecCcchHhHHHHh
Q 048308          124 --------------------------LLNSEGNSLHVGKGDGVMSYFVG  146 (413)
Q Consensus       124 --------------------------~ll~~G~~v~~G~~~~~~~~f~~  146 (413)
                                                ++|++|++.+.|+++++.+++++
T Consensus       192 e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~  240 (249)
T COG1134         192 ELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE  240 (249)
T ss_pred             HHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence                                      35566666666666666666544

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=6.1e-21  Score=168.94  Aligned_cols=120  Identities=33%  Similarity=0.563  Sum_probs=89.3

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc---cc-----Chh-----ccccEEEEecCCc
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN---PL-----SRT-----VKRKTGFVAHSNV   69 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~-----~~~-----~~~~~~~v~q~~~   69 (413)
                      .+||||.+.|||+++|+|+|||||||||+||++++.+  ..|+|.|.-.   +.     ++.     .+..=|+|.|++.
T Consensus        22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~   99 (258)
T COG4107          22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR   99 (258)
T ss_pred             ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence            4799999999999999999999999999999999974  6799988543   22     121     1224589999863


Q ss_pred             --c----CCCCCHHHHHHHH-----------H-----HcCC--------c-------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308           70 --F----YLHLTVTETLVFI-----------A-----LFRL--------P-------IKRVSRAQELLINPSLLFLDEPA  112 (413)
Q Consensus        70 --~----~~~lTv~e~l~f~-----------~-----~~~~--------~-------~krvsia~~l~~~p~llllDEPt  112 (413)
                        +    ...-.+.|-+.-.           +     ....        |       .||+.|||.|++.|+++|+||||
T Consensus       100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT  179 (258)
T COG4107         100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT  179 (258)
T ss_pred             ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence              1    2223344544211           0     1111        1       18999999999999999999999


Q ss_pred             CCCCHHHHHHHH
Q 048308          113 SGLDSTIAKQIL  124 (413)
Q Consensus       113 sgLD~~~~~~i~  124 (413)
                      -|||.+-+..++
T Consensus       180 GGLDVSVQARLL  191 (258)
T COG4107         180 GGLDVSVQARLL  191 (258)
T ss_pred             CCcchhhHHHHH
Confidence            999999988774

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5.3e-21  Score=205.86  Aligned_cols=113  Identities=23%  Similarity=0.334  Sum_probs=85.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH-
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL-   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l-   80 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|..+  +.+|+|.++|..       .++|++|+.... ..|+.+.+ 
T Consensus        16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-------~i~~~~q~~~~~-~~~~~~~v~   85 (638)
T PRK10636         16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-------QLAWVNQETPAL-PQPALEYVI   85 (638)
T ss_pred             eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC-------EEEEEecCCCCC-CCCHHHHHH
Confidence            7899999999999999999999999999999999876  467999998742       255555542211 12221111 


Q ss_pred             -----------------------HH----------------------HHHcCCc---------------hhHHHHHHHHh
Q 048308           81 -----------------------VF----------------------IALFRLP---------------IKRVSRAQELL  100 (413)
Q Consensus        81 -----------------------~f----------------------~~~~~~~---------------~krvsia~~l~  100 (413)
                                             .+                      ...+++.               +||+.||++|+
T Consensus        86 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~  165 (638)
T PRK10636         86 DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI  165 (638)
T ss_pred             HhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc
Confidence                                   00                      0111221               18999999999


Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308          101 INPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus       101 ~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .+|++|+|||||+|||..+...+.
T Consensus       166 ~~P~lLLLDEPtn~LD~~~~~~L~  189 (638)
T PRK10636        166 CRSDLLLLDEPTNHLDLDAVIWLE  189 (638)
T ss_pred             cCCCEEEEcCCCCcCCHHHHHHHH
Confidence            999999999999999999998873

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.84  E-value=7.1e-21  Score=204.99  Aligned_cols=146  Identities=23%  Similarity=0.324  Sum_probs=99.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHH----
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVT----   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~----   77 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|..+  +.+|+|.++|..       .++|++|++......+|.    
T Consensus        18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~   88 (635)
T PRK11147         18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL-------IVARLQQDPPRNVEGTVYDFVA   88 (635)
T ss_pred             eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC-------EEEEeccCCCCCCCCCHHHHHH
Confidence            7899999999999999999999999999999999987  467999998742       134444432111112222    


Q ss_pred             --------------------------HHHHHHH-----------------------HcCC------------chhHHHHH
Q 048308           78 --------------------------ETLVFIA-----------------------LFRL------------PIKRVSRA   96 (413)
Q Consensus        78 --------------------------e~l~f~~-----------------------~~~~------------~~krvsia   96 (413)
                                                +++....                       .+++            .+||++||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LA  168 (635)
T PRK11147         89 EGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALG  168 (635)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHH
Confidence                                      2221110                       1111            02899999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh-c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308           97 QELLINPSLLFLDEPASGLDSTIAKQIL-LN-S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus        97 ~~l~~~p~llllDEPtsgLD~~~~~~i~-ll-~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      ++|+.+|++|||||||+|||..++..+. ++ . +|.++..             .|+.....+.+|.++.+.+|..
T Consensus       169 raL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvliv-------------sHd~~~l~~~~d~i~~L~~G~i  231 (635)
T PRK11147        169 RALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFI-------------SHDRSFIRNMATRIVDLDRGKL  231 (635)
T ss_pred             HHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEE-------------eCCHHHHHHhcCeEEEEECCEE
Confidence            9999999999999999999999998873 22 2 3433333             2333333455677777766654

>PRK13409 putative ATPase RIL; Provisional

Probab=99.83  E-value=1.2e-20  Score=200.83  Aligned_cols=120  Identities=28%  Similarity=0.371  Sum_probs=93.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE-----------ECCcccChh------ccccEEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID-----------YNNNPLSRT------VKRKTGFV   64 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~------~~~~~~~v   64 (413)
                      +|++++ .+++||+++|+||||||||||+|+|+|.+++  ..|+|.           ++|.++...      .+..+++.
T Consensus        89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~  165 (590)
T PRK13409         89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP--NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK  165 (590)
T ss_pred             eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC--CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence            689999 9999999999999999999999999999874  579997           888775321      11235555


Q ss_pred             ecCCccCCC---CCHHHHHHHHH----------HcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           65 AHSNVFYLH---LTVTETLVFIA----------LFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        65 ~q~~~~~~~---lTv~e~l~f~~----------~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +|.....+.   .||+|++....          .+++.              +||++||++|+.+|++++|||||+|||+
T Consensus       166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~  245 (590)
T PRK13409        166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI  245 (590)
T ss_pred             ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence            554333332   39999885421          12221              2899999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          118 TIAKQIL  124 (413)
Q Consensus       118 ~~~~~i~  124 (413)
                      .++..+.
T Consensus       246 ~~~~~l~  252 (590)
T PRK13409        246 RQRLNVA  252 (590)
T ss_pred             HHHHHHH
Confidence            9998884

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.81  E-value=1.7e-19  Score=188.42  Aligned_cols=146  Identities=27%  Similarity=0.421  Sum_probs=111.7

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++++|+|+++.+|+-++|+|+||||||||||+|+|...  +.+|+|...+.       ..++|+.|+....+..||.+.+
T Consensus        17 ~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv~~~v   87 (530)
T COG0488          17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-------LRVGYLSQEPPLDPEKTVLDYV   87 (530)
T ss_pred             eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------ceEEEeCCCCCcCCCccHHHHH
Confidence            37899999999999999999999999999999999987  46799987542       2599999999999999999876


Q ss_pred             HHHHH-------------------------------------------------cCCc-------------hhHHHHHHH
Q 048308           81 VFIAL-------------------------------------------------FRLP-------------IKRVSRAQE   98 (413)
Q Consensus        81 ~f~~~-------------------------------------------------~~~~-------------~krvsia~~   98 (413)
                      .-+..                                                 ++.+             ++|+.+|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~a  167 (530)
T COG0488          88 IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARA  167 (530)
T ss_pred             HhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHH
Confidence            43210                                                 0011             169999999


Q ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHH---HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308           99 LLINPSLLFLDEPASGLDSTIAKQI---LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV  168 (413)
Q Consensus        99 l~~~p~llllDEPtsgLD~~~~~~i---~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~  168 (413)
                      |+.+|++|+|||||++||..+..-+   +.-.+|-++...+   - .+|         -.+.|++++++..|.
T Consensus       168 L~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSH---D-R~F---------Ld~V~t~I~~ld~g~  227 (530)
T COG0488         168 LLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSH---D-RYF---------LDNVATHILELDRGK  227 (530)
T ss_pred             HhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeC---C-HHH---------HHHHhhheEEecCCc
Confidence            9999999999999999999998766   3334674333322   1 122         235677777777664

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=3.3e-20  Score=208.19  Aligned_cols=119  Identities=26%  Similarity=0.357  Sum_probs=103.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|||||++|+|||-++|+|+.|||||||.++|-++.+  +.+|+|.+||.++.+    ..|++++.+|||+.+|. -|||
T Consensus      1155 VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR 1231 (1381)
T KOG0054|consen 1155 VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVR 1231 (1381)
T ss_pred             hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Cccc
Confidence            7999999999999999999999999999999999987  477999999998864    57889999999999986 4999


Q ss_pred             HHHHHHHH------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIAL------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+--..            +       ++|                  +|-+.+||||+++++||+|||+|++.|+.|-
T Consensus      1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred             cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence            99863211            1       111                  2679999999999999999999999999998


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      ..|
T Consensus      1312 ~lI 1314 (1381)
T KOG0054|consen 1312 ALI 1314 (1381)
T ss_pred             HHH
Confidence            666

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=4.3e-20  Score=162.97  Aligned_cols=151  Identities=26%  Similarity=0.442  Sum_probs=110.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc--c-----C-----hhccccEEEEecCCc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP--L-----S-----RTVKRKTGFVAHSNV   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~--~-----~-----~~~~~~~~~v~q~~~   69 (413)
                      +++|+|++++.||.+++=||||||||||||+|-+.+.  +.+|+|++....  +     .     +..++.+|||.|--.
T Consensus        26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR  103 (235)
T COG4778          26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR  103 (235)
T ss_pred             eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence            6899999999999999999999999999999999887  467999875431  1     1     123456999999877


Q ss_pred             cCCCCCHHHHHH-------------------HHHHcCCch---------------hHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           70 FYLHLTVTETLV-------------------FIALFRLPI---------------KRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        70 ~~~~lTv~e~l~-------------------f~~~~~~~~---------------krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      ..|.....|-..                   ...++++|+               |||.|||.++.|-++|+|||||+.|
T Consensus       104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL  183 (235)
T COG4778         104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL  183 (235)
T ss_pred             hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence            666655444321                   112344443               8999999999999999999999999


Q ss_pred             CHHHHHHHH-Hhc----CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhC
Q 048308          116 DSTIAKQIL-LNS----EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLAN  166 (413)
Q Consensus       116 D~~~~~~i~-ll~----~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~  166 (413)
                      |+.++..++ ++.    .|..+ .|       .|    |+...+...||.++++..
T Consensus       184 Da~Nr~vVveli~e~Ka~GaAl-vG-------IF----HDeevre~vadR~~~~~~  227 (235)
T COG4778         184 DATNRAVVVELIREAKARGAAL-VG-------IF----HDEEVREAVADRLLDVSA  227 (235)
T ss_pred             cccchHHHHHHHHHHHhcCceE-EE-------ee----ccHHHHHHHhhheeeccc
Confidence            999998886 332    23221 11       12    333445567888887754

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=2e-19  Score=201.93  Aligned_cols=128  Identities=26%  Similarity=0.488  Sum_probs=114.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      .|+|||+++++|+++||+|+-||||||||.+|.|..+  ..+|++.++|.         ++||+|++-++ +-|||||+.
T Consensus       536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs---------iaYv~Q~pWI~-ngTvreNIL  603 (1381)
T KOG0054|consen  536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS---------VAYVPQQPWIQ-NGTVRENIL  603 (1381)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe---------EEEeccccHhh-CCcHHHhhh
Confidence            5899999999999999999999999999999999987  58899999885         99999999876 569999999


Q ss_pred             HHHHcC------------C-------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-
Q 048308           82 FIALFR------------L-------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI-  123 (413)
Q Consensus        82 f~~~~~------------~-------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i-  123 (413)
                      |...+.            +                         .++|+++|||+-.|+++++||.|.|++|+++..++ 
T Consensus       604 FG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if  683 (1381)
T KOG0054|consen  604 FGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF  683 (1381)
T ss_pred             cCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence            864321            1                         12799999999999999999999999999999887 


Q ss_pred             -----------------------------HHhcCCcEEEecCcchHh
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGVM  141 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~~  141 (413)
                                                   ++|++|++...|+.++..
T Consensus       684 ~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~  730 (1381)
T KOG0054|consen  684 EECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELL  730 (1381)
T ss_pred             HHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence                                         588899999999988876

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.79  E-value=3.8e-19  Score=175.15  Aligned_cols=139  Identities=28%  Similarity=0.410  Sum_probs=111.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEEEECCcccC---h-h----ccccEEEEecCC--
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG---ETRGNIDYNNNPLS---R-T----VKRKTGFVAHSN--   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~---~-~----~~~~~~~v~q~~--   68 (413)
                      ++++||+.+++||.+||+|+||||||-..+.+.|+++..   ..+|+|.++|.++-   + .    .-.+|+.++|++  
T Consensus        25 aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMt  104 (534)
T COG4172          25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMT  104 (534)
T ss_pred             eeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccccc
Confidence            689999999999999999999999999999999998742   46799999998752   1 1    223799999997  


Q ss_pred             ccCCCCCHHHHHHHHHHc--------------------CCc-----------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308           69 VFYLHLTVTETLVFIALF--------------------RLP-----------------IKRVSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        69 ~~~~~lTv~e~l~f~~~~--------------------~~~-----------------~krvsia~~l~~~p~llllDEP  111 (413)
                      .+.|--|+.+-+.=...+                    ++|                 +|||-||.||+.+|++||.|||
T Consensus       105 SLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEP  184 (534)
T COG4172         105 SLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP  184 (534)
T ss_pred             ccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCC
Confidence            455666766554322111                    111                 2899999999999999999999


Q ss_pred             CCCCCHHHHHHH--------------------------------HHhcCCcEEEecCcchH
Q 048308          112 ASGLDSTIAKQI--------------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       112 tsgLD~~~~~~i--------------------------------~ll~~G~~v~~G~~~~~  140 (413)
                      |++||...+.+|                                ++|.+|+++..|+.+..
T Consensus       185 TTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~l  245 (534)
T COG4172         185 TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL  245 (534)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHH
Confidence            999999999887                                47889999999986654

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.77  E-value=1.2e-18  Score=161.25  Aligned_cols=120  Identities=16%  Similarity=0.107  Sum_probs=88.6

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-------CeeEEEEECCcccCh-hccccEEEEecCCccC----
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-------ETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFY----   71 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-------~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~----   71 (413)
                      +++++++++| +++|+||||||||||+++|+|...+.       ...|++.++|..... ..++.+++|+|+...+    
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~   92 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII   92 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence            5789999999 99999999999999999999886421       223567777776533 2346799999987654    


Q ss_pred             CCCCHHHHHHHHHHcCC--------chhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           72 LHLTVTETLVFIALFRL--------PIKRVSRAQELL----INPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        72 ~~lTv~e~l~f~~~~~~--------~~krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +.-.+.|.+........        .+||++||++++    .+|+++++||||+|||...+..+.
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~  157 (197)
T cd03278          93 SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA  157 (197)
T ss_pred             ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH
Confidence            12234555544110000        128999999987    466999999999999999999884

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PLN03073 ABC transporter F family; Provisional

Probab=99.76  E-value=5.1e-19  Score=192.01  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=98.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCccc-----Ch-------------hccccEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPL-----SR-------------TVKRKTG   62 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~-----~~-------------~~~~~~~   62 (413)
                      +|+|+|+++++||.++|+||||||||||||+|+|+... -+..|+|.+.++..     ..             ..++.++
T Consensus       192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~  271 (718)
T PLN03073        192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQ  271 (718)
T ss_pred             EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence            78999999999999999999999999999999997421 14568887644321     10             0112245


Q ss_pred             EEecCCccCC----------------CCCHHHHH----H----------------HHHHcCCc---------------hh
Q 048308           63 FVAHSNVFYL----------------HLTVTETL----V----------------FIALFRLP---------------IK   91 (413)
Q Consensus        63 ~v~q~~~~~~----------------~lTv~e~l----~----------------f~~~~~~~---------------~k   91 (413)
                      +++|+..+..                .-.+.+.+    .                ....++++               ++
T Consensus       272 ~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~  351 (718)
T PLN03073        272 LVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRM  351 (718)
T ss_pred             HHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHH
Confidence            5555422110                00000100    0                00111221               28


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308           92 RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus        92 rvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                      |++||++|+.+|++|+|||||+|||+.+...+.  +..-|.++..-+            |+.....+.+|.++.+.+|..
T Consensus       352 rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivs------------Hd~~~l~~~~d~i~~l~~g~i  419 (718)
T PLN03073        352 RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVS------------HAREFLNTVVTDILHLHGQKL  419 (718)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEE------------CCHHHHHHhCCEEEEEECCEE
Confidence            999999999999999999999999999999884  333344444422            232222345666677666654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.75  E-value=1e-17  Score=175.28  Aligned_cols=126  Identities=33%  Similarity=0.427  Sum_probs=101.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l   80 (413)
                      +++++|+.+++|+.++|+||||+|||||||+|+|...+  .+|.|.+.-       .-.+||..|+. .+.++.|+.|.+
T Consensus       337 l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~-------~v~igyf~Q~~~~l~~~~t~~d~l  407 (530)
T COG0488         337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGE-------TVKIGYFDQHRDELDPDKTVLEEL  407 (530)
T ss_pred             eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCC-------ceEEEEEEehhhhcCccCcHHHHH
Confidence            78999999999999999999999999999999998864  579988753       23599999986 434777898888


Q ss_pred             HHHH-------------HcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc-CC
Q 048308           81 VFIA-------------LFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS-EG  129 (413)
Q Consensus        81 ~f~~-------------~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~-~G  129 (413)
                      .=..             .+..+               +.|+.+|+.++.+|.+|+|||||+.||..+...+-  +.+ +|
T Consensus       408 ~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G  487 (530)
T COG0488         408 SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG  487 (530)
T ss_pred             HhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC
Confidence            5322             11111               26999999999999999999999999999998882  333 78


Q ss_pred             cEEEecC
Q 048308          130 NSLHVGK  136 (413)
Q Consensus       130 ~~v~~G~  136 (413)
                      .++...+
T Consensus       488 tvl~VSH  494 (530)
T COG0488         488 TVLLVSH  494 (530)
T ss_pred             eEEEEeC
Confidence            8776643

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.74  E-value=8.7e-18  Score=158.72  Aligned_cols=132  Identities=24%  Similarity=0.277  Sum_probs=77.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHH-HHHhCCC--------CCC--CeeEEEEECCcccChhcc-ccEEEEec-C
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLP-TTLGGRL--------STG--ETRGNIDYNNNPLSRTVK-RKTGFVAH-S   67 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl-~~l~g~~--------~~~--~~~G~i~~~g~~~~~~~~-~~~~~v~q-~   67 (413)
                      .+|+|||+++++||+++|+|+||||||||+ ..+...-        .+.  ...|.+..   +.....+ ...++..| +
T Consensus         9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   85 (226)
T cd03270           9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDK---PDVDSIEGLSPAIAIDQK   85 (226)
T ss_pred             hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCc---cccccccCCCceEEecCC
Confidence            378999999999999999999999999995 4443100        000  00011100   0000011 12233333 3


Q ss_pred             Cc-cCCCCCHH---HHHHHH----------------HHcCCc---------------hhHHHHHHHHhhCC--CEEEEeC
Q 048308           68 NV-FYLHLTVT---ETLVFI----------------ALFRLP---------------IKRVSRAQELLINP--SLLFLDE  110 (413)
Q Consensus        68 ~~-~~~~lTv~---e~l~f~----------------~~~~~~---------------~krvsia~~l~~~p--~llllDE  110 (413)
                      .. ..+..+|.   |...+.                ..++++               +||++||++|+.+|  ++++|||
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE  165 (226)
T cd03270          86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE  165 (226)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            22 22333433   211111                111111               28999999999998  5999999


Q ss_pred             CCCCCCHHHHHHHH-----HhcCCcEEEec
Q 048308          111 PASGLDSTIAKQIL-----LNSEGNSLHVG  135 (413)
Q Consensus       111 PtsgLD~~~~~~i~-----ll~~G~~v~~G  135 (413)
                      ||+|||+.++.++.     +..+|.++..-
T Consensus       166 Pt~gLD~~~~~~l~~~l~~~~~~g~tii~i  195 (226)
T cd03270         166 PSIGLHPRDNDRLIETLKRLRDLGNTVLVV  195 (226)
T ss_pred             CccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            99999999998883     22457665553

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.73  E-value=1.1e-17  Score=160.83  Aligned_cols=133  Identities=33%  Similarity=0.433  Sum_probs=93.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHh-----CCCC-----CC---Cee------EEEEECCcccChhccc---
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLG-----GRLS-----TG---ETR------GNIDYNNNPLSRTVKR---   59 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~-----g~~~-----~~---~~~------G~i~~~g~~~~~~~~~---   59 (413)
                      -|+|||..++.|++++|.|+||||||||++.+.     ..+.     ++   ...      --|.++..++....|.   
T Consensus        10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~   89 (261)
T cd03271          10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA   89 (261)
T ss_pred             cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence            379999999999999999999999999998551     1110     10   111      2356666554211110   


Q ss_pred             ---------------------------cEEEEecCCccCCCCCHHHHHHHHHHc-------------CCc----------
Q 048308           60 ---------------------------KTGFVAHSNVFYLHLTVTETLVFIALF-------------RLP----------   89 (413)
Q Consensus        60 ---------------------------~~~~v~q~~~~~~~lTv~e~l~f~~~~-------------~~~----------   89 (413)
                                                 .+.|..++......+||.|++.|...+             +++          
T Consensus        90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~  169 (261)
T cd03271          90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATT  169 (261)
T ss_pred             HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCcccc
Confidence                                       134555555556799999999875431             121          


Q ss_pred             -----hhHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           90 -----IKRVSRAQELLIN---PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        90 -----~krvsia~~l~~~---p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                           +||+.||++|+.+   |++++|||||+|||+.....+.     +.++|.++..
T Consensus       170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi  227 (261)
T cd03271         170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV  227 (261)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence                 2899999999996   7999999999999999998883     3345776655

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.71  E-value=2.5e-17  Score=156.68  Aligned_cols=124  Identities=16%  Similarity=0.255  Sum_probs=86.2

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC----------------CCCCC----eeE--EEEECCcc----cC--h-hccccEEE
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR----------------LSTGE----TRG--NIDYNNNP----LS--R-TVKRKTGF   63 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~----------------~~~~~----~~G--~i~~~g~~----~~--~-~~~~~~~~   63 (413)
                      |++++|+||||||||||+++|++.                ..++.    .++  +|.+++..    ..  + ..++.+++
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~  102 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGL  102 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEEC
Confidence            789999999999999999999832                22111    112  45555421    11  1 34566899


Q ss_pred             EecCCccCC-CCCHHHHHHHHHHcCCc----------------------------------hhHHHHHHHHhh----CCC
Q 048308           64 VAHSNVFYL-HLTVTETLVFIALFRLP----------------------------------IKRVSRAQELLI----NPS  104 (413)
Q Consensus        64 v~q~~~~~~-~lTv~e~l~f~~~~~~~----------------------------------~krvsia~~l~~----~p~  104 (413)
                      ++|+..+++ ..|..|...+...++++                                  +||++||++|+.    +|+
T Consensus       103 ~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~  182 (243)
T cd03272         103 KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAP  182 (243)
T ss_pred             CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCC
Confidence            988877766 46877777665543210                                  179999999974    589


Q ss_pred             EEEEeCCCCCCCHHHHHHHH----HhcCCcEEEecC
Q 048308          105 LLFLDEPASGLDSTIAKQIL----LNSEGNSLHVGK  136 (413)
Q Consensus       105 llllDEPtsgLD~~~~~~i~----ll~~G~~v~~G~  136 (413)
                      ++++||||+|||+.++..+.    -+.+|.++..-+
T Consensus       183 illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~  218 (243)
T cd03272         183 FYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT  218 (243)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            99999999999999998883    223466666543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.8e-17  Score=169.99  Aligned_cols=155  Identities=26%  Similarity=0.446  Sum_probs=127.9

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecC---CccCCCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHS---NVFYLHL   74 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~---~~~~~~l   74 (413)
                      ++|+||++++||+++|-|-=|||+|-|+++|.|..+  ...|+|.+||++..     +..+..++||+.|   +-++..+
T Consensus       275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~  352 (500)
T COG1129         275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM  352 (500)
T ss_pred             eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence            579999999999999999999999999999999654  45899999999764     2456679999987   4678899


Q ss_pred             CHHHHHHHHHHcCC------c---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           75 TVTETLVFIALFRL------P---------------------------------IKRVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        75 Tv~e~l~f~~~~~~------~---------------------------------~krvsia~~l~~~p~llllDEPtsgL  115 (413)
                      +|+||+.++...+.      +                                 .|||.||+.|.++|++|||||||.|.
T Consensus       353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI  432 (500)
T COG1129         353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI  432 (500)
T ss_pred             cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence            99999987732111      0                                 18999999999999999999999999


Q ss_pred             CHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          116 DSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       116 D~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      |..+..+|.     +-++|..|-.=+            -+.|+....||.++.+..|+..+
T Consensus       433 DVGAK~eIy~li~~lA~~G~ail~iS------------SElpEll~~~DRIlVm~~Gri~~  481 (500)
T COG1129         433 DVGAKAEIYRLIRELAAEGKAILMIS------------SELPELLGLSDRILVMREGRIVG  481 (500)
T ss_pred             ccchHHHHHHHHHHHHHCCCEEEEEe------------CChHHHHhhCCEEEEEECCEEEE
Confidence            999999984     556787655422            25567778899999999987755

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.68  E-value=1.2e-17  Score=148.19  Aligned_cols=172  Identities=26%  Similarity=0.409  Sum_probs=120.1

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      |-.+|+.+..||+.-++|||||||||||-.++|+.+   .+|+|.++|.+.+.    +..|..+|..|+..-...+-|..
T Consensus        15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~   91 (248)
T COG4138          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH   91 (248)
T ss_pred             ccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence            445789999999999999999999999999999985   67999999998753    34566778777654444444555


Q ss_pred             HHH-------------HHH-HcCCch--------------hHHHHHHHHh-----hCC--CEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLV-------------FIA-LFRLPI--------------KRVSRAQELL-----INP--SLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~-------------f~~-~~~~~~--------------krvsia~~l~-----~~p--~llllDEPtsgLD~~~~~~i  123 (413)
                      .|.             ..+ .+++..              |||-+|...+     .||  ++++||||.++||...+..+
T Consensus        92 YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL  171 (248)
T COG4138          92 YLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL  171 (248)
T ss_pred             hhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence            443             222 222221              7888876554     355  79999999999999877555


Q ss_pred             -----HHhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHHH
Q 048308          124 -----LLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAYK  189 (413)
Q Consensus       124 -----~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (413)
                           -+-.+|..|...            +|+....-..||.+.-+..|.....++.++.-+.+-+...|.
T Consensus       172 drll~~~c~~G~~vims------------~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg  230 (248)
T COG4138         172 DRLLSALCQQGLAIVMS------------SHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYG  230 (248)
T ss_pred             HHHHHHHHhCCcEEEEe------------ccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHhc
Confidence                 133468766553            345444456688888888887765555444444555555554

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.67  E-value=1.3e-17  Score=156.18  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=30.8

Q ss_pred             hHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHH
Q 048308           91 KRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        91 krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      ||++||++++.    +|+++++||||+|||+.++..+.
T Consensus       134 ~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~  171 (212)
T cd03274         134 TLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA  171 (212)
T ss_pred             HHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH
Confidence            89999999974    57999999999999999998873

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.67  E-value=2.7e-16  Score=164.41  Aligned_cols=133  Identities=28%  Similarity=0.360  Sum_probs=102.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      .|++.|+.++|||-+.|.||||||||||+|+|+|+-+-  .+|.|.+-.       ...+-|+||.+.+.. -|.||.+.
T Consensus       408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~--g~G~I~~P~-------~~~~lflpQ~PY~p~-GtLre~l~  477 (604)
T COG4178         408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW--GSGRISMPA-------DSALLFLPQRPYLPQ-GTLREALC  477 (604)
T ss_pred             eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc--CCCceecCC-------CCceEEecCCCCCCC-ccHHHHHh
Confidence            68999999999999999999999999999999999874  347776541       234778999887654 48888876


Q ss_pred             HHH---------------HcCCc--------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-H
Q 048308           82 FIA---------------LFRLP--------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-L  125 (413)
Q Consensus        82 f~~---------------~~~~~--------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-l  125 (413)
                      +..               +++++                    +||+++||.|+++|++++|||.|++||..+...++ +
T Consensus       478 YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~  557 (604)
T COG4178         478 YPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL  557 (604)
T ss_pred             CCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH
Confidence            532               12221                    28999999999999999999999999999999985 2


Q ss_pred             hcC---C-cEEEecCcchHhHHH
Q 048308          126 NSE---G-NSLHVGKGDGVMSYF  144 (413)
Q Consensus       126 l~~---G-~~v~~G~~~~~~~~f  144 (413)
                      +.+   + .+|..|.+.....+.
T Consensus       558 l~~~lp~~tvISV~Hr~tl~~~h  580 (604)
T COG4178         558 LKEELPDATVISVGHRPTLWNFH  580 (604)
T ss_pred             HHhhCCCCEEEEeccchhhHHHH
Confidence            222   3 466666665555554

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.66  E-value=1.5e-16  Score=156.60  Aligned_cols=154  Identities=27%  Similarity=0.354  Sum_probs=118.6

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +..||.+++.||++-|+|.||||||||++.+.|+++|  .+|+|.+||+|++.    .+|+..+-|+-|-.+|+.+--.|
T Consensus       339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e  416 (546)
T COG4615         339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE  416 (546)
T ss_pred             ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence            4579999999999999999999999999999999984  67999999999863    45665666776666665433222


Q ss_pred             H------HHH-------HHHcCC-------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH------Hh
Q 048308           79 T------LVF-------IALFRL-------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL------LN  126 (413)
Q Consensus        79 ~------l~f-------~~~~~~-------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~------ll  126 (413)
                      +      +.+       +++..+             .+||+++-.||+.+-+++.+||=-+-.|+.-+..+.      +-
T Consensus       417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK  496 (546)
T COG4615         417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK  496 (546)
T ss_pred             cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH
Confidence            2      222       221111             248999999999999999999999999999998772      34


Q ss_pred             cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          127 SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       127 ~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      .+|++|+.-+.++  +||           .-||.++.+.+|+..+
T Consensus       497 ~qGKTI~aIsHDd--~YF-----------~~ADrll~~~~G~~~e  528 (546)
T COG4615         497 EQGKTIFAISHDD--HYF-----------IHADRLLEMRNGQLSE  528 (546)
T ss_pred             HhCCeEEEEecCc--hhh-----------hhHHHHHHHhcCceee
Confidence            4799998854322  344           5699999999998764

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.64  E-value=1.9e-16  Score=147.38  Aligned_cols=116  Identities=22%  Similarity=0.233  Sum_probs=82.1

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHh----CCCCCCCeeEEEEECCcccC-hhccccEEEEecCC-----ccCCCC
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLG----GRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSN-----VFYLHL   74 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~-----~~~~~l   74 (413)
                      ..++.+.+| +++|+||||||||||+++|.    |...+  ..|.+..+..... ...+..+++++|++     .....+
T Consensus        15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~--~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~   91 (204)
T cd03240          15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL   91 (204)
T ss_pred             ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc--ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence            346677888 99999999999999999995    77653  2344431111111 22344688888887     444566


Q ss_pred             CHHHHHHHHHHcC-----------C---chh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HH
Q 048308           75 TVTETLVFIALFR-----------L---PIK------RVSRAQELLINPSLLFLDEPASGLDSTIAK-QI  123 (413)
Q Consensus        75 Tv~e~l~f~~~~~-----------~---~~k------rvsia~~l~~~p~llllDEPtsgLD~~~~~-~i  123 (413)
                      |+.|++.+...-+           +   ..|      |+++|++++.+|+++++||||++||+.++. .+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l  161 (204)
T cd03240          92 AILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL  161 (204)
T ss_pred             hHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH
Confidence            8888885532110           1   114      478999999999999999999999999988 66

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.63  E-value=4.9e-16  Score=145.37  Aligned_cols=129  Identities=19%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             cceeEEe-cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC--cccC-hhccccEEEEecCCcc------CCCC
Q 048308            5 GIRGVSS-LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN--NPLS-RTVKRKTGFVAHSNVF------YLHL   74 (413)
Q Consensus         5 ~vs~~~~-~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~-~~~~~~~~~v~q~~~~------~~~l   74 (413)
                      ++++... +|++++|+||||||||||+++|++.+- +...+....+.  .... ...+..+++++|++..      .+.+
T Consensus        19 ~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl   97 (213)
T cd03279          19 VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL   97 (213)
T ss_pred             EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence            3555433 588999999999999999999996432 12222222211  1111 1233457778777543      2345


Q ss_pred             CHHHHHHH--------HHHcCC--------chhHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHH----
Q 048308           75 TVTETLVF--------IALFRL--------PIKRVSRAQELLI----------NPSLLFLDEPASGLDSTIAKQIL----  124 (413)
Q Consensus        75 Tv~e~l~f--------~~~~~~--------~~krvsia~~l~~----------~p~llllDEPtsgLD~~~~~~i~----  124 (413)
                      +..+....        ...+..        .+||+++|++|+.          +|+++++||||+|||+.++..+.    
T Consensus        98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~  177 (213)
T cd03279          98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALE  177 (213)
T ss_pred             CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            55544331        111111        1389999999985          67899999999999999998873    


Q ss_pred             -HhcCCcEEEe
Q 048308          125 -LNSEGNSLHV  134 (413)
Q Consensus       125 -ll~~G~~v~~  134 (413)
                       +..+|.++..
T Consensus       178 ~~~~~~~tii~  188 (213)
T cd03279         178 LIRTENRMVGV  188 (213)
T ss_pred             HHHhCCCEEEE
Confidence             2234766655

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.59  E-value=5.6e-16  Score=143.64  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+++  .+|++++|+||||||||||+|+|+|...       +...|.+...     ..++.|.+.+++.+|+.|++.
T Consensus        16 v~n~i~l--~~g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l~   81 (199)
T cd03283          16 VANDIDM--EKKNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDLR   81 (199)
T ss_pred             ecceEEE--cCCcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchhccc
Confidence            3455544  5589999999999999999999988541       1112332211     125667788899999999997


Q ss_pred             HHHHc-CCchhHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 FIALF-RLPIKRVSRAQELLI--NPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 f~~~~-~~~~krvsia~~l~~--~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.... +...+|+.-+.+.+.  +|+++++|||++|+|+..+..+
T Consensus        82 ~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l  126 (199)
T cd03283          82 DGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAA  126 (199)
T ss_pred             cccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHH
Confidence            64321 111245555555566  9999999999999999988654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=2.8e-16  Score=150.60  Aligned_cols=121  Identities=21%  Similarity=0.220  Sum_probs=77.8

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc-cc-C-----hhccccEEEEecCC---------ccCCCCCH
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN-PL-S-----RTVKRKTGFVAHSN---------VFYLHLTV   76 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~-~-----~~~~~~~~~v~q~~---------~~~~~lTv   76 (413)
                      ..+++|+||||||||||+++|++.+.+ ...|++...|. +. .     ...+..+++++|++         ...+.+||
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~-~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV  103 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGI-TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV  103 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcc-cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence            459999999999999999999998752 12356666554 21 0     11233577777763         11223333


Q ss_pred             HHHH---------------------HHHHHcCCc----------------------------------hhHHHHHHHHh-
Q 048308           77 TETL---------------------VFIALFRLP----------------------------------IKRVSRAQELL-  100 (413)
Q Consensus        77 ~e~l---------------------~f~~~~~~~----------------------------------~krvsia~~l~-  100 (413)
                      .+++                     .....++++                                  +||+++|++|+ 
T Consensus       104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  183 (251)
T cd03273         104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL  183 (251)
T ss_pred             EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence            3222                     111122221                                  17999999998 


Q ss_pred             ---hCCCEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEe
Q 048308          101 ---INPSLLFLDEPASGLDSTIAKQIL----LNSEGNSLHV  134 (413)
Q Consensus       101 ---~~p~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~  134 (413)
                         .+|+++++||||+|||..++..+.    -+.+|.++-.
T Consensus       184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~  224 (251)
T cd03273         184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIV  224 (251)
T ss_pred             hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence               578999999999999999998883    1235664433

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.54  E-value=8.2e-15  Score=149.25  Aligned_cols=122  Identities=24%  Similarity=0.285  Sum_probs=75.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEE-----------------
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFV-----------------   64 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v-----------------   64 (413)
                      +++|+++++.+|+-.+|+|+|||||||+|++|+|+..|.+..=.++.-.++..+...+.+-++                 
T Consensus        90 l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~  169 (614)
T KOG0927|consen   90 LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAED  169 (614)
T ss_pred             eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999998764433334333322211100001011                 


Q ss_pred             --ec-CC-ccCCCCCHHHHHH------HHHH-------cC-Cc--------------hhHHHHHHHHhhCCCEEEEeCCC
Q 048308           65 --AH-SN-VFYLHLTVTETLV------FIAL-------FR-LP--------------IKRVSRAQELLINPSLLFLDEPA  112 (413)
Q Consensus        65 --~q-~~-~~~~~lTv~e~l~------f~~~-------~~-~~--------------~krvsia~~l~~~p~llllDEPt  112 (413)
                        .+ ++ ..-...+..|-+.      +.++       +. ++              +.|+++|++|..+|++|+|||||
T Consensus       170 l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPt  249 (614)
T KOG0927|consen  170 LAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPT  249 (614)
T ss_pred             HHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCc
Confidence              11 11 0000000111110      0000       00 00              16999999999999999999999


Q ss_pred             CCCCHHHHHHH
Q 048308          113 SGLDSTIAKQI  123 (413)
Q Consensus       113 sgLD~~~~~~i  123 (413)
                      +|||..+..-+
T Consensus       250 nhLDleA~~wL  260 (614)
T KOG0927|consen  250 NHLDLEAIVWL  260 (614)
T ss_pred             cCCCHHHHHHH
Confidence            99999887655

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.53  E-value=3.4e-14  Score=142.27  Aligned_cols=105  Identities=29%  Similarity=0.340  Sum_probs=82.6

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALF   86 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~   86 (413)
                      .|++..||+++++||||-||||+.++|+|.++|  .+|+    .      ..-+++|=||--.--...||++-|.-+...
T Consensus       361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~------~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~  428 (591)
T COG1245         361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----E------EDLKVSYKPQYISPDYDGTVEDLLRSAIRS  428 (591)
T ss_pred             CCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----C------ccceEeecceeecCCCCCcHHHHHHHhhhh
Confidence            467788999999999999999999999999885  4564    1      123477777754444678999988654332


Q ss_pred             CC-----------------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           87 RL-----------------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        87 ~~-----------------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.                             ..|||+||.+|..++++.+||||++-||+..+..+
T Consensus       429 ~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v  494 (591)
T COG1245         429 AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV  494 (591)
T ss_pred             hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence            11                             11999999999999999999999999999988665

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.51  E-value=6.1e-14  Score=142.01  Aligned_cols=158  Identities=23%  Similarity=0.307  Sum_probs=124.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc----Ch--hccccEEEEecCC---ccCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL----SR--TVKRKTGFVAHSN---VFYL   72 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~----~~--~~~~~~~~v~q~~---~~~~   72 (413)
                      .++|||++++.||+++|.|=+|-|-+.|+.+|+|..++  .+|+|.++|++.    +.  ..+..++|||+|.   -+.+
T Consensus       273 ~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~  350 (501)
T COG3845         273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL  350 (501)
T ss_pred             eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence            47899999999999999999999999999999999763  449999999985    22  2345689999886   4678


Q ss_pred             CCCHHHHHHHHHHcCC-----------------------------------------chhHHHHHHHHhhCCCEEEEeCC
Q 048308           73 HLTVTETLVFIALFRL-----------------------------------------PIKRVSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        73 ~lTv~e~l~f~~~~~~-----------------------------------------~~krvsia~~l~~~p~llllDEP  111 (413)
                      .+|+.||+.+...-+-                                         +.||+-+||||..+|++|+..+|
T Consensus       351 ~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP  430 (501)
T COG3845         351 DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP  430 (501)
T ss_pred             CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence            9999999976543210                                         01899999999999999999999


Q ss_pred             CCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          112 ASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       112 tsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      |.|||..++..|.     .-++|+-|..=+            .+..+..+.||.+..+.+|+..+..
T Consensus       431 TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS------------~dLDEil~lsDrIaVi~~Gri~~~~  485 (501)
T COG3845         431 TRGLDVGAIEFIHERLLELRDAGKAVLLIS------------EDLDEILELSDRIAVIYEGRIVGIV  485 (501)
T ss_pred             CccccHHHHHHHHHHHHHHHhcCCEEEEEe------------hhHHHHHHhhheeeeeeCCceeccc
Confidence            9999999998872     334676655422            2334456779999998888776543

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.49  E-value=1.5e-13  Score=152.30  Aligned_cols=70  Identities=30%  Similarity=0.493  Sum_probs=52.2

Q ss_pred             hHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308           91 KRVSRAQELLINP---SLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL  162 (413)
Q Consensus        91 krvsia~~l~~~p---~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~  162 (413)
                      ||+.||++|+.+|   ++++|||||+|||......++     +.++|++|..-+            |+.... ..||+++
T Consensus       837 QRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit------------H~~~~i-~~aD~ii  903 (943)
T PRK00349        837 QRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE------------HNLDVI-KTADWII  903 (943)
T ss_pred             HHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe------------cCHHHH-HhCCEEE
Confidence            8999999999999   999999999999999998883     334687766532            222222 2488888


Q ss_pred             Hh------hCCccCCCC
Q 048308          163 DL------ANGVVSGDP  173 (413)
Q Consensus       163 ~~------~~~~~~~~~  173 (413)
                      ++      ..|++...+
T Consensus       904 ~Lgp~~G~~~G~Iv~~G  920 (943)
T PRK00349        904 DLGPEGGDGGGEIVATG  920 (943)
T ss_pred             EecCCcCCCCCEEEEeC
Confidence            88      567665433

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.49  E-value=3.6e-14  Score=144.63  Aligned_cols=124  Identities=28%  Similarity=0.365  Sum_probs=87.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecC--CccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHS--NVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~--~~~~~~lTv~e~   79 (413)
                      +.++++|-+.+++-++++||||+|||||||++.|.+++  ..|.|.-.-+.       ++++..|+  +.+--+.++-|+
T Consensus       405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~-------~~~~y~Qh~~e~ldl~~s~le~  475 (614)
T KOG0927|consen  405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN-------KLPRYNQHLAEQLDLDKSSLEF  475 (614)
T ss_pred             hhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-------cchhhhhhhHhhcCcchhHHHH
Confidence            56788999999999999999999999999999999874  66877543221       22333332  222224445555


Q ss_pred             HHHH--------------HHcCC---------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc-
Q 048308           80 LVFI--------------ALFRL---------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS-  127 (413)
Q Consensus        80 l~f~--------------~~~~~---------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~-  127 (413)
                      +.=.              .++++               .++||.+|+.++..|.+|+|||||+|||..+...+-  +.. 
T Consensus       476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~  555 (614)
T KOG0927|consen  476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF  555 (614)
T ss_pred             HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Confidence            4321              11222               127999999999999999999999999999988773  222 


Q ss_pred             CCcEEEe
Q 048308          128 EGNSLHV  134 (413)
Q Consensus       128 ~G~~v~~  134 (413)
                      .|-+|.-
T Consensus       556 ~Ggvv~v  562 (614)
T KOG0927|consen  556 PGGVVLV  562 (614)
T ss_pred             CCceeee
Confidence            4655543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.47  E-value=2.2e-13  Score=157.50  Aligned_cols=33  Identities=42%  Similarity=0.662  Sum_probs=31.3

Q ss_pred             hHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHH
Q 048308           91 KRVSRAQELL---INPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        91 krvsia~~l~---~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ||+.||++|+   .+|++++|||||+|||..+..++
T Consensus       816 QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~L  851 (1809)
T PRK00635        816 QRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL  851 (1809)
T ss_pred             HHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHH
Confidence            8999999998   69999999999999999999887

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=3.1e-14  Score=144.35  Aligned_cols=122  Identities=24%  Similarity=0.343  Sum_probs=75.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR-LSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|++-++++..|.-.+|+|+||+|||||||+|+.- ...-+++-++.=+..+..    +.-....-++.++..+...++-
T Consensus        95 LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l  174 (582)
T KOG0062|consen   95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTL  174 (582)
T ss_pred             hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchH
Confidence            68889999999999999999999999999999861 110011111111111100    0000012234444444333343


Q ss_pred             HHHHH-HHHHcCC-------c--------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLV-FIALFRL-------P--------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~-f~~~~~~-------~--------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .|.-. ..+-++.       |        +-|+++||||..+|++|+|||||+.||..+..=+
T Consensus       175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WL  237 (582)
T KOG0062|consen  175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL  237 (582)
T ss_pred             HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHH
Confidence            43322 1111211       1        1599999999999999999999999999887655

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.43  E-value=4.9e-13  Score=123.91  Aligned_cols=114  Identities=21%  Similarity=0.181  Sum_probs=71.9

Q ss_pred             ccceeEEecCc-EEEEECCCCCCHHHHHHHHh--------CCCCCCCeeEEEEECCcccChhccccEEEEecCCccCC-C
Q 048308            4 KGIRGVSSLGE-LLAILGPSGRGKTTLPTTLG--------GRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL-H   73 (413)
Q Consensus         4 ~~vs~~~~~Ge-~~~ilG~sGsGKSTLl~~l~--------g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~-~   73 (413)
                      .++|+++.+|+ +++|.||||||||||+|+|+        |..-+  ....             ..++|+.|.-..+. .
T Consensus        18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~~-------------~~~~~~~~~~~~lg~~   82 (200)
T cd03280          18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAEG-------------SSLPVFENIFADIGDE   82 (200)
T ss_pred             EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--cccc-------------ccCcCccEEEEecCch
Confidence            47899999995 89999999999999999998        43321  1110             12333333322111 1


Q ss_pred             CCHHHHH-HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH------HhcCCcEEEecC
Q 048308           74 LTVTETL-VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL------LNSEGNSLHVGK  136 (413)
Q Consensus        74 lTv~e~l-~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~------ll~~G~~v~~G~  136 (413)
                      .++.+.+ .|+..+   +|+..++++ +.+|+++++|||++|||+..+..+.      +..+|.++..-+
T Consensus        83 ~~l~~~~s~fs~g~---~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~t  148 (200)
T cd03280          83 QSIEQSLSTFSSHM---KNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATT  148 (200)
T ss_pred             hhhhcCcchHHHHH---HHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            1222222 233322   267777755 5899999999999999999887662      223466555544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.42  E-value=9.4e-13  Score=145.77  Aligned_cols=68  Identities=31%  Similarity=0.530  Sum_probs=50.4

Q ss_pred             hHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308           91 KRVSRAQELLI---NPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL  162 (413)
Q Consensus        91 krvsia~~l~~---~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~  162 (413)
                      ||+.||++|+.   +|++++|||||+|||...+..++     +.++|+++..-+            |+.... ..||+++
T Consensus       835 QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~------------H~~~~i-~~aD~ii  901 (924)
T TIGR00630       835 QRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE------------HNLDVI-KTADYII  901 (924)
T ss_pred             HHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe------------CCHHHH-HhCCEEE
Confidence            89999999997   59999999999999999998883     334687765532            332222 2488888


Q ss_pred             Hh------hCCccCC
Q 048308          163 DL------ANGVVSG  171 (413)
Q Consensus       163 ~~------~~~~~~~  171 (413)
                      ++      ..|++..
T Consensus       902 ~Lgp~~G~~gG~iv~  916 (924)
T TIGR00630       902 DLGPEGGDGGGTIVA  916 (924)
T ss_pred             EecCCccCCCCEEEE
Confidence            88      5666543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.42  E-value=8.1e-13  Score=135.76  Aligned_cols=134  Identities=22%  Similarity=0.330  Sum_probs=97.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+|+.|+.|+-+.|+||||||||+|+|+++|+-+  ..+|.+..-.+...    +.+-|+||.+... .-|.||-+-
T Consensus       450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~~~----~~lfflPQrPYmt-~GTLRdQvI  522 (659)
T KOG0060|consen  450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDGGP----KDLFFLPQRPYMT-LGTLRDQVI  522 (659)
T ss_pred             eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccCCC----CceEEecCCCCcc-ccchhheee
Confidence            5788999999999999999999999999999999976  35677765433211    3477888876543 336666655


Q ss_pred             HHH--------------------HcCC----------c---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           82 FIA--------------------LFRL----------P---------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        82 f~~--------------------~~~~----------~---------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      |..                    ..++          .               .||++.||-+.++|++-+|||.||++|
T Consensus       523 YP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~  602 (659)
T KOG0060|consen  523 YPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT  602 (659)
T ss_pred             ccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhcc
Confidence            431                    1111          0               189999999999999999999999999


Q ss_pred             HHHHHHHH--HhcCCcE-EEecCcchHhH
Q 048308          117 STIAKQIL--LNSEGNS-LHVGKGDGVMS  142 (413)
Q Consensus       117 ~~~~~~i~--ll~~G~~-v~~G~~~~~~~  142 (413)
                      ......+.  +-+.|-+ +-.|.+.....
T Consensus       603 ~dvE~~~Yr~~r~~giT~iSVgHRkSL~k  631 (659)
T KOG0060|consen  603 EDVEGALYRKCREMGITFISVGHRKSLWK  631 (659)
T ss_pred             HHHHHHHHHHHHHcCCeEEEeccHHHHHh
Confidence            98887774  3334644 33444444433

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.42  E-value=1.2e-13  Score=126.13  Aligned_cols=124  Identities=20%  Similarity=0.311  Sum_probs=86.8

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-Ce-eEEEEECCccc---Ch-hc----cccEEEEecCCcc
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ET-RGNIDYNNNPL---SR-TV----KRKTGFVAHSNVF   70 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~-~G~i~~~g~~~---~~-~~----~~~~~~v~q~~~~   70 (413)
                      ++++++|+++.+||+-+++|.||||||-..|+|+|..+.. .+ .....+++.++   ++ ..    .+.++.++|++.-
T Consensus        21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s  100 (330)
T COG4170          21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS  100 (330)
T ss_pred             EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence            3678999999999999999999999999999999987532 11 12334444432   22 22    2356788998743


Q ss_pred             --CCCCCHHHHHH---------------H----------HHHcCCc-----------------hhHHHHHHHHhhCCCEE
Q 048308           71 --YLHLTVTETLV---------------F----------IALFRLP-----------------IKRVSRAQELLINPSLL  106 (413)
Q Consensus        71 --~~~lTv~e~l~---------------f----------~~~~~~~-----------------~krvsia~~l~~~p~ll  106 (413)
                        -|.-+|...|-               |          ..+.+..                 -|+|.||.|++..|++|
T Consensus       101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL  180 (330)
T COG4170         101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL  180 (330)
T ss_pred             hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence              33333332221               1          1111111                 07899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHH
Q 048308          107 FLDEPASGLDSTIAKQIL  124 (413)
Q Consensus       107 llDEPtsgLD~~~~~~i~  124 (413)
                      +.||||+.+|+.++.++.
T Consensus       181 IADEPTN~~e~~Tq~Qif  198 (330)
T COG4170         181 IADEPTNSMEPTTQAQIF  198 (330)
T ss_pred             eccCCCcccCccHHHHHH
Confidence            999999999999999984

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.41  E-value=8.3e-13  Score=122.35  Aligned_cols=118  Identities=15%  Similarity=0.046  Sum_probs=71.6

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCC-CCC-
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYL-HLT-   75 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~-~lT-   75 (413)
                      ++++++.+.+| +.+|+||||||||||+.+|...+.. ...+  ...|....     ......+..++|+....+ ..+ 
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~-~~~~--~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~   87 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG-KASD--TNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV   87 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC-Cccc--ccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH
Confidence            35677778887 8899999999999999999743221 1000  00011100     011223556666543332 122 


Q ss_pred             -----HHHHHHHHHHcCC--------chhHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           76 -----VTETLVFIALFRL--------PIKRVSRAQEL----LINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        76 -----v~e~l~f~~~~~~--------~~krvsia~~l----~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                           ++|-+........        .+||++||+++    +.+|++++|||||+|||..++..+.
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~  153 (198)
T cd03276          88 LSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST  153 (198)
T ss_pred             HHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence                 2222322100000        12799999999    5899999999999999999998773

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.39  E-value=3.4e-13  Score=112.15  Aligned_cols=71  Identities=20%  Similarity=0.118  Sum_probs=58.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+++++.+++||+++|+||||||||||++++.        +|++.++|.+...    ...+..++++|+   ....|++
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~   72 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLR   72 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHH
Confidence            689999999999999999999999999999986        4789999987632    344556777776   3356999


Q ss_pred             HHHHHH
Q 048308           78 ETLVFI   83 (413)
Q Consensus        78 e~l~f~   83 (413)
                      |||.++
T Consensus        73 ~Ni~~~   78 (107)
T cd00820          73 LNIFLI   78 (107)
T ss_pred             hhceee
Confidence            999763

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.38  E-value=4.8e-13  Score=124.47  Aligned_cols=123  Identities=16%  Similarity=0.151  Sum_probs=72.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +.+|+++..++|++++|+||||+||||+++++++..--.. -|. .+...... ....+.......++.      +.+.+
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~-~G~-~vpa~~~~l~~~d~I~~~~~~~d~------~~~~~   89 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQ-IGC-FVPAEYATLPIFNRLLSRLSNDDS------MERNL   89 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHH-cCC-CcchhhcCccChhheeEecCCccc------cchhh
Confidence            5789999999999999999999999999999986531000 010 00000000 000111111111111      11111


Q ss_pred             -HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH------HHhcCCcEEEecC
Q 048308           81 -VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI------LLNSEGNSLHVGK  136 (413)
Q Consensus        81 -~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i------~ll~~G~~v~~G~  136 (413)
                       .|+..    .+|++.+.+++++|+++++|||++|+|+.....+      .+.+.|..+..-+
T Consensus        90 S~fs~e----~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~T  148 (204)
T cd03282          90 STFASE----MSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFAT  148 (204)
T ss_pred             hHHHHH----HHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence             12222    2566777788899999999999999999765544      2444566555543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.37  E-value=8.9e-13  Score=122.31  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH-
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA-   84 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~-   84 (413)
                      .++++.+|++++|+||||||||||+++|++..-. ...|....       ..+..+++..|..   ..++..+++.... 
T Consensus        22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~~~-------~~~~~i~~~dqi~---~~~~~~d~i~~~~s   90 (202)
T cd03243          22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCFVP-------AESASIPLVDRIF---TRIGAEDSISDGRS   90 (202)
T ss_pred             eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCCcc-------ccccccCCcCEEE---EEecCcccccCCce
Confidence            4677889999999999999999999999843210 01121110       0111233322221   1122222221000 


Q ss_pred             HcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           85 LFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        85 ~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .+....++++.+.+++.+|+++++||||+|+|+.....+
T Consensus        91 ~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l  129 (202)
T cd03243          91 TFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAI  129 (202)
T ss_pred             eHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence            001123778888888999999999999999999877655

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.36  E-value=2.4e-12  Score=120.65  Aligned_cols=119  Identities=23%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC-----------------CCeeEEE--EECCcccChhccccEEEE
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST-----------------GETRGNI--DYNNNPLSRTVKRKTGFV   64 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-----------------~~~~G~i--~~~g~~~~~~~~~~~~~v   64 (413)
                      +++.+.+.+| +.+|+|+|||||||||++|.-.+..                 +..++.|  .+++.......++..-++
T Consensus        15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~   93 (213)
T cd03277          15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL   93 (213)
T ss_pred             ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence            3445555554 8899999999999999998543210                 1112222  222222122334444577


Q ss_pred             ecCCc-cCCCCCHHHHHHHHHHc--C---C--------chhHHHHHHH----HhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           65 AHSNV-FYLHLTVTETLVFIALF--R---L--------PIKRVSRAQE----LLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        65 ~q~~~-~~~~lTv~e~l~f~~~~--~---~--------~~krvsia~~----l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .|++. -+..++++|.+. ....  +   .        .+||+.++.+    ++.+|+++++||||+|||+.++..+.
T Consensus        94 ~q~~~~~~~~~~~~e~l~-~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~  170 (213)
T cd03277          94 PQDRVGEFAKLSPIELLV-KFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF  170 (213)
T ss_pred             chHHHHHHHhCChHhHhe-eeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH
Confidence            77764 367888888772 1100  0   0        1155555433    35899999999999999999999883

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.33  E-value=4.5e-12  Score=115.61  Aligned_cols=154  Identities=21%  Similarity=0.247  Sum_probs=101.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC---------------hhccccEEEEec
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS---------------RTVKRKTGFVAH   66 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---------------~~~~~~~~~v~q   66 (413)
                      +.-|+|+.++.|.-+.++|.||||||||||+|+|..-.+.  |-|.++|+..-               ..+.+..+.-. 
T Consensus        29 ~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~--~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-  105 (291)
T KOG2355|consen   29 IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-  105 (291)
T ss_pred             eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC--CeEEEcCcCccccccccccCceeEecccccccccccc-
Confidence            5678999999999999999999999999999999754222  78888887531               11222222221 


Q ss_pred             CCccCCCCCHHHHHHHHHH-------------c------C------CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           67 SNVFYLHLTVTETLVFIAL-------------F------R------LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        67 ~~~~~~~lTv~e~l~f~~~-------------~------~------~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      +-.+...+++.+.+ |+..             +      |      ..++||.|+.-|+..-++|+|||-|--||.-++.
T Consensus       106 evplq~D~sae~mi-fgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARa  184 (291)
T KOG2355|consen  106 EVPLQGDISAEHMI-FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARA  184 (291)
T ss_pred             cccccccccHHHHH-hhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHH
Confidence            22233456666554 3210             0      1      1238999999999999999999999999999998


Q ss_pred             HHH-Hhc-----CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          122 QIL-LNS-----EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       122 ~i~-ll~-----~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      +++ +++     .|.+|-+.+     +.|.-       -..=+.++..+.+|+..+
T Consensus       185 dLLeFlkeEce~RgatIVYAT-----HIFDG-------Le~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  185 DLLEFLKEECEQRGATIVYAT-----HIFDG-------LETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             HHHHHHHHHHhhcCcEEEEEe-----eeccc-------hhhcchhEEEecCCeeee
Confidence            875 332     254443322     22321       123345666777776654

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.33  E-value=5.4e-12  Score=120.73  Aligned_cols=44  Identities=20%  Similarity=0.217  Sum_probs=35.8

Q ss_pred             hHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           91 KRVSRAQELLIN----PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        91 krvsia~~l~~~----p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      +|++||++++.+    |+++++||||+|||..++..+.     +..+|.++..
T Consensus       162 ~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~  214 (247)
T cd03275         162 TMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIV  214 (247)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEE
Confidence            799999999875    8999999999999999998773     2234665555

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=1.2e-11  Score=123.42  Aligned_cols=111  Identities=31%  Similarity=0.430  Sum_probs=83.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC--ccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN--VFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~   79 (413)
                      +.++++|-|.--.-+||+||||.||||||+.|.|.+.|  ..|+..-|       .+-.+|+..|+.  .+-..-|.-|.
T Consensus       602 LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp~Ey  672 (807)
T KOG0066|consen  602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-------HRLRIGWFDQHANEALNGEETPVEY  672 (807)
T ss_pred             hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc-------ceeeeechhhhhHHhhccccCHHHH
Confidence            34667777777788999999999999999999999874  55665433       233578777763  44455566666


Q ss_pred             HHHHHHcCCc-----------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALFRLP-----------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~~~~-----------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |.-.  +.+|                             +-||.+|.--+..|++|||||||++||..+...+
T Consensus       673 Lqr~--FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDAL  743 (807)
T KOG0066|consen  673 LQRK--FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDAL  743 (807)
T ss_pred             HHHh--cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHH
Confidence            6421  1111                             1599999888899999999999999999988776

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.26  E-value=1.9e-11  Score=111.46  Aligned_cols=112  Identities=17%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC--C--CeeEEE-E-ECCcccChhccccEEEEecCC-ccCCCCCHHH
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST--G--ETRGNI-D-YNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTE   78 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~--~--~~~G~i-~-~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e   78 (413)
                      ......++.+.+|+||||||||+++.+|.=....  .  ...... . .+...... ....+....+.. .++|+-+..|
T Consensus        15 ~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~f~~~~~~~~~~~~~~   93 (178)
T cd03239          15 ETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGI-NSASVEITFDKSYFLVLQGKVEQ   93 (178)
T ss_pred             CEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCC-ceEEEEEEEECceEEecCCcCcc
Confidence            3444444449999999999999999998433211  0  111111 1 11111111 011122222222 2233333333


Q ss_pred             HHHHHHHcCCchhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFRLPIKRVSRAQELL----INPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~~~~krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .+.     ...++|+++|++++    .+|+++++|||++|||...+..+
T Consensus        94 ~LS-----~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i  137 (178)
T cd03239          94 ILS-----GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRV  137 (178)
T ss_pred             cCC-----HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHH
Confidence            321     11248999999996    69999999999999999999877

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.25  E-value=1.5e-11  Score=115.34  Aligned_cols=103  Identities=20%  Similarity=0.225  Sum_probs=66.5

Q ss_pred             eeEEecC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCcc-CCCCCHHHHHH-H
Q 048308            7 RGVSSLG--ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVF-YLHLTVTETLV-F   82 (413)
Q Consensus         7 s~~~~~G--e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~-~~~lTv~e~l~-f   82 (413)
                      +..+.++  ..++|.||||+|||||||.++....- ...|......       .-.++|..|.... -...++.+.+. |
T Consensus        21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~~S~f   92 (213)
T cd03281          21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSGQSAF   92 (213)
T ss_pred             eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhccchH
Confidence            3444454  79999999999999999999742100 1124332211       1224555554322 22334555442 2


Q ss_pred             HHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           83 IALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        83 ~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ...    .+|++++++++.+|+++++|||++|+|+....
T Consensus        93 ~~e----l~~l~~~l~~~~~~slvllDE~~~gtd~~~~~  127 (213)
T cd03281          93 MID----LYQVSKALRLATRRSLVLIDEFGKGTDTEDGA  127 (213)
T ss_pred             HHH----HHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence            222    38999999999999999999999999986543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.25  E-value=4.4e-12  Score=119.10  Aligned_cols=106  Identities=19%  Similarity=0.149  Sum_probs=71.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +.+|+++..++ ++++|.|||||||||+||++++..-.    +.   .|.... ..+..++++.|   +++.+++.|++.
T Consensus        20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp-~~~~~i~~~~~---i~~~~~~~~~ls   87 (216)
T cd03284          20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVP-ASKAEIGVVDR---IFTRIGASDDLA   87 (216)
T ss_pred             EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeec-cccceecceee---EeccCCchhhhc
Confidence            56788888887 99999999999999999999864311    11   112111 12345666654   568899999996


Q ss_pred             HHHHcCCchhHHHHHHH--HhhCCCEEEEeCC---CCCCCHHHH
Q 048308           82 FIALFRLPIKRVSRAQE--LLINPSLLFLDEP---ASGLDSTIA  120 (413)
Q Consensus        82 f~~~~~~~~krvsia~~--l~~~p~llllDEP---tsgLD~~~~  120 (413)
                      ...... -..+..++..  .+.+|+++++|||   |+++|....
T Consensus        88 ~g~s~f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~  130 (216)
T cd03284          88 GGRSTF-MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI  130 (216)
T ss_pred             cCcchH-HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence            432110 1123344444  4579999999999   999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.19  E-value=4e-11  Score=116.04  Aligned_cols=111  Identities=17%  Similarity=0.105  Sum_probs=77.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----hhccccEEEEecCCccCCCCCHHHHHHHHHHcCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----RTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRL   88 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~   88 (413)
                      .-++|+||||||||||+++|+|.+.  +.+|+|.++|+++.     ......+++++|.+. .+.++|.|+..-+..   
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k~~~---  185 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPKAEG---  185 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchHHHH---
Confidence            5789999999999999999999987  46799999998763     133345778898764 467788887543221   


Q ss_pred             chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcEEEecCc
Q 048308           89 PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKG  137 (413)
Q Consensus        89 ~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~v~~G~~  137 (413)
                           -.......+|+++++|||++.-+.....+  .+.+|.++..-..
T Consensus       186 -----~~~~i~~~~P~villDE~~~~e~~~~l~~--~~~~G~~vI~ttH  227 (270)
T TIGR02858       186 -----MMMLIRSMSPDVIVVDEIGREEDVEALLE--ALHAGVSIIATAH  227 (270)
T ss_pred             -----HHHHHHhCCCCEEEEeCCCcHHHHHHHHH--HHhCCCEEEEEec
Confidence                 12223336999999999986533322222  2346877666543

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.19  E-value=2.5e-11  Score=120.62  Aligned_cols=115  Identities=25%  Similarity=0.373  Sum_probs=82.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC------CCeeEEEEECCcccChhccccEEEEecC-CccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST------GETRGNIDYNNNPLSRTVKRKTGFVAHS-NVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~~~~~~~~v~q~-~~~~~~l   74 (413)
                      +|+|+|++++||++++|+|+|||||||+|++|.|....      .+.+|.|.+--+..       .+.++-+ +.-+...
T Consensus       398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-------~a~iPge~Ep~f~~~  470 (593)
T COG2401         398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-------SALIPGEYEPEFGEV  470 (593)
T ss_pred             eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-------hhccCcccccccCch
Confidence            68999999999999999999999999999999997431      14567666543221       2223322 1223334


Q ss_pred             CHHHHHH-----------HHHHcCC----------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           75 TVTETLV-----------FIALFRL----------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        75 Tv~e~l~-----------f~~~~~~----------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |+.|.+.           .....++                .++|..||..+..+|.+++.||--+.||..|+..+
T Consensus       471 tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rV  546 (593)
T COG2401         471 TILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRV  546 (593)
T ss_pred             hHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHH
Confidence            4444432           1111111                13799999999999999999999999999999888

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.18  E-value=2.6e-11  Score=121.75  Aligned_cols=113  Identities=28%  Similarity=0.388  Sum_probs=76.9

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEE-----E--EECCcccChhcc----------ccEEEEecCCcc
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGN-----I--DYNNNPLSRTVK----------RKTGFVAHSNVF   70 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~-----i--~~~g~~~~~~~~----------~~~~~v~q~~~~   70 (413)
                      .+||++++|+|+||-||||-+|+|+|.+.|.  ..++.     |  .+-|..+...++          .+..||.--+..
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~  176 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV  176 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence            4899999999999999999999999998763  22221     1  122322211111          123344433333


Q ss_pred             CCCCCHHHHHHHHHH----------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           71 YLHLTVTETLVFIAL----------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        71 ~~~lTv~e~l~f~~~----------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +. -||+|-|.-...          +.+              ..||++||.+++.+++++++|||||-||...+.++
T Consensus       177 ~K-G~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~  252 (591)
T COG1245         177 VK-GKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA  252 (591)
T ss_pred             hc-chHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHH
Confidence            33 388888764321          111              12999999999999999999999999999888766

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.17  E-value=2.3e-11  Score=109.04  Aligned_cols=101  Identities=24%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR   87 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~   87 (413)
                      ..+.++.++.|+|||||||||+++++....-  ..+|.+..... .     +.-.++++....+    +.....   ...
T Consensus        16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~--~~~~~~~~~~~-~-----~~g~~~~~~~~~~----i~~~~~---lS~   80 (162)
T cd03227          16 VTFGEGSLTIITGPNGSGKSTILDAIGLALG--GAQSATRRRSG-V-----KAGCIVAAVSAEL----IFTRLQ---LSG   80 (162)
T ss_pred             EecCCCCEEEEECCCCCCHHHHHHHHHHHHH--hcchhhhccCc-c-----cCCCcceeeEEEE----ehheee---ccc
Confidence            3444556999999999999999999865431  11121111100 0     0011122221111    000000   111


Q ss_pred             CchhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHH
Q 048308           88 LPIKRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        88 ~~~krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i  123 (413)
                      ...+|+++|++|..    +|+++++|||++|+|+.....+
T Consensus        81 G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l  120 (162)
T cd03227          81 GEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL  120 (162)
T ss_pred             cHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence            13489999999987    7899999999999999998877

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.17  E-value=1.8e-11  Score=115.49  Aligned_cols=121  Identities=17%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +.+|+++..++|++++|.||||+|||||++.++-..- -.-.|. .+...... ....+....+..+|...      +.+
T Consensus        19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-la~~g~-~vpa~~~~~~~~~~il~~~~l~d~~~------~~l   90 (222)
T cd03285          19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL-MAQIGC-FVPCDSADIPIVDCILARVGASDSQL------KGV   90 (222)
T ss_pred             EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH-HHHhCC-CcCcccEEEeccceeEeeeccccchh------cCc
Confidence            5789999999999999999999999999999862100 000110 00000000 00011111111111110      111


Q ss_pred             HHHHHcCCchhHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHH---Hhc-CCcEEEec
Q 048308           81 VFIALFRLPIKRVSRAQEL--LINPSLLFLDEP---ASGLDSTIAKQIL---LNS-EGNSLHVG  135 (413)
Q Consensus        81 ~f~~~~~~~~krvsia~~l--~~~p~llllDEP---tsgLD~~~~~~i~---ll~-~G~~v~~G  135 (413)
                           -....+++.+++.+  +.+|++++||||   |++||.......+   +.. .|..+..-
T Consensus        91 -----S~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlis  149 (222)
T cd03285          91 -----STFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFA  149 (222)
T ss_pred             -----ChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence                 01123677777777  899999999999   9999998876543   333 35555443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.12  E-value=4e-10  Score=109.62  Aligned_cols=44  Identities=18%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             hHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEe
Q 048308           91 KRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQIL----LNSEGNSLHV  134 (413)
Q Consensus        91 krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~  134 (413)
                      +|+.+|++++.    +|+++++||||+|||+.++..+.    -+.+|.++..
T Consensus       177 ~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~  228 (276)
T cd03241         177 SRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLC  228 (276)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            79999987654    99999999999999999998873    1234555544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.11  E-value=9.4e-11  Score=124.76  Aligned_cols=62  Identities=35%  Similarity=0.578  Sum_probs=50.6

Q ss_pred             hHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308           91 KRVSRAQELLINP---SLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL  162 (413)
Q Consensus        91 krvsia~~l~~~p---~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~  162 (413)
                      ||+.+|.+|..+.   .+++|||||+||-..-..+++     |.++|++|..            +.|.... ...|||++
T Consensus       829 QRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViV------------IEHNLdV-Ik~AD~II  895 (935)
T COG0178         829 QRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV------------IEHNLDV-IKTADWII  895 (935)
T ss_pred             HHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE------------Eecccce-EeecCEEE
Confidence            9999999999877   999999999999998888774     6678988766            3344433 46699999


Q ss_pred             Hhh
Q 048308          163 DLA  165 (413)
Q Consensus       163 ~~~  165 (413)
                      |+-
T Consensus       896 DLG  898 (935)
T COG0178         896 DLG  898 (935)
T ss_pred             EcC
Confidence            985

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.09  E-value=1.5e-09  Score=100.68  Aligned_cols=135  Identities=15%  Similarity=0.002  Sum_probs=106.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308          268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW---------LIKPQSIRLAIGAVLMKQKVASTITATIVL  338 (413)
Q Consensus       268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~---------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~  338 (413)
                      -+.+.++++|.+..++..++..+++..+.||+.|++++...         .++..++|.++++++++...+..+  +.+.
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~--~~~~  134 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRFLAL--VLLV  134 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH--HHHH
Confidence            34457899999999999999999999999999999875221         345677888999999876544433  2222


Q ss_pred             HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308          339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGR  410 (413)
Q Consensus       339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~  410 (413)
                      +.+        .+.+|+|++|+.+++|.+|+.+++-...+++.      ..+.|.++++++++.+++.++++...|+.+|
T Consensus       135 ~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------~~~~~~~~~~L~~~~~v~~~la~~~~~~~~~  208 (208)
T TIGR03062       135 LQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------DGTLWQAVAVLLLILVVFLALSLLSARRKRR  208 (208)
T ss_pred             HHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            222        58999999999999999999999987777641      2356889999999999999999998887664

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.07  E-value=4.1e-10  Score=106.13  Aligned_cols=109  Identities=16%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR-LSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +.+|+++.+++|++++|.||||+||||+++++++. +.  ...|...... ... ..+.+....+...|.+...++    
T Consensus        20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l--a~~G~~v~a~-~~~~~~~~~i~~~~~~~d~~~~~~S----   92 (222)
T cd03287          20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM--AQIGSFVPAS-SATLSIFDSVLTRMGASDSIQHGMS----   92 (222)
T ss_pred             EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH--HhCCCEEEcC-ceEEeccceEEEEecCccccccccc----
Confidence            56899999999999999999999999999999983 22  2335443321 111 112222233333333322222    


Q ss_pred             HHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           80 LVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        80 l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                       .|...+    +|++-...-+++++++++|||.+|.|+.....
T Consensus        93 -tF~~e~----~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~  130 (222)
T cd03287          93 -TFMVEL----SETSHILSNCTSRSLVILDELGRGTSTHDGIA  130 (222)
T ss_pred             -hHHHHH----HHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence             233322    55655556678999999999988877555444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.07  E-value=1e-09  Score=106.52  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             hHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           91 KRVSRAQELL---------INPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        91 krvsia~~l~---------~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      |++.+|++|+         .+|+++++||||++||+..+..+.
T Consensus       190 ~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~  232 (270)
T cd03242         190 RTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL  232 (270)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH
Confidence            7899998875         799999999999999999999885

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.07  E-value=2e-10  Score=117.06  Aligned_cols=115  Identities=20%  Similarity=0.246  Sum_probs=81.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      ++..+++.++||--+.|.||||||||+|+++|+|+-+   +     ++|.-..+ ....+-|+||.+..- --|.||-+-
T Consensus       497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---v-----y~g~L~~P-~~~~mFYIPQRPYms-~gtlRDQII  566 (728)
T KOG0064|consen  497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---V-----YNGLLSIP-RPNNIFYIPQRPYMS-GGTLRDQII  566 (728)
T ss_pred             eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---c-----cCCeeecC-CCcceEeccCCCccC-cCcccceee
Confidence            4678999999999999999999999999999999975   2     33332212 123477888875433 223333322


Q ss_pred             HH----------------------------HHc---------------CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           82 FI----------------------------ALF---------------RLPIKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        82 f~----------------------------~~~---------------~~~~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +.                            ++.               +..+||+.+||.+-++|+.-+|||-||+....
T Consensus       567 YPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsid  646 (728)
T KOG0064|consen  567 YPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSID  646 (728)
T ss_pred             cCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccc
Confidence            11                            000               01138999999999999999999999998877


Q ss_pred             HHHHHHHh
Q 048308          119 IAKQILLN  126 (413)
Q Consensus       119 ~~~~i~ll  126 (413)
                      ....+.-.
T Consensus       647 vE~~i~~~  654 (728)
T KOG0064|consen  647 VEGKIFQA  654 (728)
T ss_pred             hHHHHHHH
Confidence            77777533

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.04  E-value=3.7e-10  Score=131.11  Aligned_cols=63  Identities=29%  Similarity=0.481  Sum_probs=50.1

Q ss_pred             hHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308           91 KRVSRAQELLIN---PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL  162 (413)
Q Consensus        91 krvsia~~l~~~---p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~  162 (413)
                      ||+.+|.+|..+   +.+++|||||+||+.....+++     +.+.|++|..=            .|+... ...|||++
T Consensus      1706 qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi------------eH~~~~-i~~aD~ii 1772 (1809)
T PRK00635       1706 IAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI------------DHDPAL-LKQADYLI 1772 (1809)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE------------eCCHHH-HHhCCEEE
Confidence            899999999876   7899999999999999999885     55789887663            233222 34499999


Q ss_pred             HhhC
Q 048308          163 DLAN  166 (413)
Q Consensus       163 ~~~~  166 (413)
                      |+-.
T Consensus      1773 dlgp 1776 (1809)
T PRK00635       1773 EMGP 1776 (1809)
T ss_pred             EcCC
Confidence            9864

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.01  E-value=2.5e-09  Score=99.74  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             hHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHH
Q 048308           91 KRVSRAQELLINPSLLFLDEPA-----SGLDSTIAKQIL  124 (413)
Q Consensus        91 krvsia~~l~~~p~llllDEPt-----sgLD~~~~~~i~  124 (413)
                      .++.||++++.+|+++++||||     +|||+.++..+.
T Consensus       159 ~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~  197 (215)
T PTZ00132        159 PFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAE  197 (215)
T ss_pred             HHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHH
Confidence            5789999999999999999999     999999999884

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.98  E-value=6.3e-11  Score=108.51  Aligned_cols=104  Identities=18%  Similarity=0.383  Sum_probs=92.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCC-hHH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048308          267 NFRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKST-TPW--------LIKPQSIRLAIGAVLMKQKVASTITATIV  337 (413)
Q Consensus       267 ~Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~-~~~--------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~  337 (413)
                      .|++.+|.+|+.+.+++..++..+++.++.|++.|++.+ ...        .+++.++|.++++++++.+.++.+.+++.
T Consensus        90 ~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  169 (210)
T PF01061_consen   90 LYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLIL  169 (210)
T ss_pred             cccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhhhhhhhhhhcc
Confidence            689999999999999999999999999999999999987 211        34677899999999999999999999887


Q ss_pred             HHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhc
Q 048308          338 LQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQY  370 (413)
Q Consensus       338 ~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef  370 (413)
                      .+++        .+.+|+|++|+.|+||++|++|++..++|
T Consensus       170 ~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  170 LLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             cccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            7754        58899999999999999999999999886

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.93  E-value=1.6e-09  Score=99.26  Aligned_cols=94  Identities=21%  Similarity=0.214  Sum_probs=50.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCCeeEEEEECCcccChhccccEEEEecCCccCC-CCCHHHHH-HHHHHcCCchh
Q 048308           15 LLAILGPSGRGKTTLPTTLGG-RLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL-HLTVTETL-VFIALFRLPIK   91 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~-~lTv~e~l-~f~~~~~~~~k   91 (413)
                      +++|.||||+||||++|.++- ...  ...|..... .      +-.++++.+.-..+. .-+..+.+ .|+..    .+
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~l--a~~G~~v~a-~------~~~~~~~d~il~~~~~~d~~~~~~s~fs~~----~~   67 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIM--AQIGSFVPA-E------SAELPVFDRIFTRIGASDSLAQGLSTFMVE----MK   67 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHH--HHhCCCeee-h------heEecccceEEEEeCCCCchhccccHHHHH----HH
Confidence            468999999999999999972 221  011221110 0      011222221111111 00111111 12222    13


Q ss_pred             HHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHH
Q 048308           92 RVSRAQELL--INPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        92 rvsia~~l~--~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |  +++.+.  .+|+++++|||++|+|+.....+
T Consensus        68 ~--l~~~l~~~~~~~llllDEp~~g~d~~~~~~~   99 (185)
T smart00534       68 E--TANILKNATENSLVLLDELGRGTSTYDGVAI   99 (185)
T ss_pred             H--HHHHHHhCCCCeEEEEecCCCCCCHHHHHHH
Confidence            3  444554  49999999999999999877665

>TIGR01069 mutS2 MutS2 family protein

Probab=98.91  E-value=2.2e-09  Score=117.79  Aligned_cols=105  Identities=22%  Similarity=0.236  Sum_probs=65.9

Q ss_pred             ceeEEecC-cEEEEECCCCCCHHHHHHHHhCC-CCCCCeeE-EEEECCcccChhccccEEEEecCCccC-CCCCHHHHH-
Q 048308            6 IRGVSSLG-ELLAILGPSGRGKTTLPTTLGGR-LSTGETRG-NIDYNNNPLSRTVKRKTGFVAHSNVFY-LHLTVTETL-   80 (413)
Q Consensus         6 vs~~~~~G-e~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G-~i~~~g~~~~~~~~~~~~~v~q~~~~~-~~lTv~e~l-   80 (413)
                      +|+.+.+| ++++|.||||+|||||||+|+|. +.  ...| .|-.+       ....++|+.|....+ +..++.+++ 
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~--aq~G~~Vpa~-------~~~~~~~~d~i~~~i~~~~si~~~LS  384 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM--FQSGIPIPAN-------EHSEIPYFEEIFADIGDEQSIEQNLS  384 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH--HHhCCCccCC-------ccccccchhheeeecChHhHHhhhhh
Confidence            68888877 99999999999999999999987 22  1123 11111       011233333322111 123444444 


Q ss_pred             HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .|+..++   ++..+++.+ .+|+++++|||++|+|+.....+
T Consensus       385 tfS~~m~---~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~al  423 (771)
T TIGR01069       385 TFSGHMK---NISAILSKT-TENSLVLFDELGAGTDPDEGSAL  423 (771)
T ss_pred             HHHHHHH---HHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHH
Confidence            2333332   445555444 79999999999999999988777

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.1e-09  Score=107.56  Aligned_cols=118  Identities=25%  Similarity=0.335  Sum_probs=72.2

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC---CC----CeeEEEEECCcccC----hhccccEEEEecCC---
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS---TG----ETRGNIDYNNNPLS----RTVKRKTGFVAHSN---   68 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~---~~----~~~G~i~~~g~~~~----~~~~~~~~~v~q~~---   68 (413)
                      ..|-|++|-.|.-.+++||||-||||||+.|+.|--   +.    .++-+|..+..+.-    +.-.+.......++   
T Consensus       280 FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~  359 (807)
T KOG0066|consen  280 FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLM  359 (807)
T ss_pred             eeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            457789999999999999999999999999988732   11    12233333332210    00011111111111   


Q ss_pred             --ccCCCCCHHHHHHHHH-H-------------------cCCc---------------hhHHHHHHHHhhCCCEEEEeCC
Q 048308           69 --VFYLHLTVTETLVFIA-L-------------------FRLP---------------IKRVSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        69 --~~~~~lTv~e~l~f~~-~-------------------~~~~---------------~krvsia~~l~~~p~llllDEP  111 (413)
                        .--...|+-|.|.=.+ .                   ++.+               +-|||+||+|...|.+|+||||
T Consensus       360 ~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEP  439 (807)
T KOG0066|consen  360 SQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEP  439 (807)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCC
Confidence              1113455555553110 0                   1111               0499999999999999999999


Q ss_pred             CCCCCHHHH
Q 048308          112 ASGLDSTIA  120 (413)
Q Consensus       112 tsgLD~~~~  120 (413)
                      |+.||-...
T Consensus       440 TNHLDLNAV  448 (807)
T KOG0066|consen  440 TNHLDLNAV  448 (807)
T ss_pred             cccccccee
Confidence            999997554

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=4.9e-09  Score=106.99  Aligned_cols=126  Identities=28%  Similarity=0.341  Sum_probs=85.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC----------
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY----------   71 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~----------   71 (413)
                      ++.+++..++.-+-.+++|+||+||||++|++.|.+++  .+|.+..++       +.+++|..|...-+          
T Consensus       379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~vd~  449 (582)
T KOG0062|consen  379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAVDF  449 (582)
T ss_pred             hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc-------cceecchhHhhhhHHHHHhHHHHH
Confidence            34566666666678899999999999999999998763  567776654       34577777654322          


Q ss_pred             -----CCCCHHHHHHHHHHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH--Hhc-C
Q 048308           72 -----LHLTVTETLVFIALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL--LNS-E  128 (413)
Q Consensus        72 -----~~lTv~e~l~f~~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~--ll~-~  128 (413)
                           |..|-+|.=.-...++++               +-||.+|.....+|.+|+|||||+.||..+-..+.  +-. +
T Consensus       450 ~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~  529 (582)
T KOG0062|consen  450 MEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN  529 (582)
T ss_pred             HHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC
Confidence                 333222221111122221               24999999999999999999999999999887773  222 5


Q ss_pred             CcEEEecC
Q 048308          129 GNSLHVGK  136 (413)
Q Consensus       129 G~~v~~G~  136 (413)
                      |-+|-...
T Consensus       530 GGVv~VSH  537 (582)
T KOG0062|consen  530 GGVVLVSH  537 (582)
T ss_pred             CcEEEEEC
Confidence            66655433

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.87  E-value=1.4e-08  Score=92.96  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=71.5

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCC--ccCCCCCHHHHHHH
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSN--VFYLHLTVTETLVF   82 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~--~~~~~lTv~e~l~f   82 (413)
                      +...+++|+.++|+||||||||||+++|+|..++  ..|.|.+.+..-.. ..++.++++.|.+  ...+..|+.+.+..
T Consensus        18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (186)
T cd01130          18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS   95 (186)
T ss_pred             HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH
Confidence            3456789999999999999999999999999873  56888887643211 2234456655543  34566787777754


Q ss_pred             HHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcE
Q 048308           83 IALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNS  131 (413)
Q Consensus        83 ~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~  131 (413)
                      +               |=.+|+.++++|--.   ..+...+-....|+.
T Consensus        96 ~---------------lR~~pd~i~igEir~---~ea~~~~~a~~tGh~  126 (186)
T cd01130          96 A---------------LRMRPDRIIVGEVRG---GEALDLLQAMNTGHP  126 (186)
T ss_pred             H---------------hccCCCEEEEEccCc---HHHHHHHHHHhcCCC
Confidence            3               335799999999875   333333333455654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00064 recF recombination protein F; Reviewed

Probab=98.81  E-value=5e-08  Score=98.59  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++++.+.|| +++|+||||||||||+.+|..
T Consensus        14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~   45 (361)
T PRK00064         14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYL   45 (361)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHH
Confidence            46788888888 999999999999999999864

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.80  E-value=3.3e-09  Score=108.80  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=42.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEEECCcccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NIDYNNNPLS   54 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~   54 (413)
                      +|++||+.+++||+++|+|||||||||||+  +|+..+  .+| +|.++|.+..
T Consensus        21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~--~sGg~I~ldg~~~~   70 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF--SEGYEFFLDATHSF   70 (504)
T ss_pred             HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC--CCCCEEEECCEECC
Confidence            689999999999999999999999999999  666553  455 8999998764

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.80  E-value=1e-08  Score=96.47  Aligned_cols=111  Identities=17%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +-+|+++..++|++++|.||||+||||+++.+++..-- .-.|.- +-..... ..+.+...-+..+|.+....+     
T Consensus        19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G~~-vpa~~~~i~~~~~i~~~~~~~d~~~~~~S-----   91 (218)
T cd03286          19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMGMD-VPAKSMRLSLVDRIFTRIGARDDIMKGES-----   91 (218)
T ss_pred             EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcCCc-cCccccEeccccEEEEecCcccccccCcc-----
Confidence            45899999999999999999999999999999875210 000110 0000000 001111112222222222211     


Q ss_pred             HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .|...    -++++-....+++|+++++|||.+|+|+.....+
T Consensus        92 tF~~e----~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~l  130 (218)
T cd03286          92 TFMVE----LSETANILRHATPDSLVILDELGRGTSTHDGYAI  130 (218)
T ss_pred             hHHHH----HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHH
Confidence            12222    2555555566789999999999999999887665

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.75  E-value=4.3e-08  Score=98.27  Aligned_cols=104  Identities=29%  Similarity=0.307  Sum_probs=69.5

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH-------
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV-------   81 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~-------   81 (413)
                      .+...|++..+|.||-||||++++++|+++++. .|+|-          .-.++|-+|.-.-=..-|||+.+.       
T Consensus       363 efsdSeiivmlgEngtgkTTfi~mlag~~~pd~-~~e~p----------~lnVSykpqkispK~~~tvR~ll~~kIr~ay  431 (592)
T KOG0063|consen  363 EFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE-GGEIP----------VLNVSYKPQKISPKREGTVRQLLHTKIRDAY  431 (592)
T ss_pred             ccCCceeEEEEccCCcchhHHHHHHhcCCCCCc-cCccc----------ccceeccccccCccccchHHHHHHHHhHhhh
Confidence            334457899999999999999999999987532 23331          112444444332222345555442       


Q ss_pred             ----HHHHc------------------CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           82 ----FIALF------------------RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        82 ----f~~~~------------------~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                          |....                  +...||+++|..|=..+++.+.|||.+-||+..+..-
T Consensus       432 ~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A  495 (592)
T KOG0063|consen  432 MHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA  495 (592)
T ss_pred             cCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence                11111                  1123899999999999999999999999999987543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.73  E-value=7.4e-08  Score=89.21  Aligned_cols=101  Identities=18%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCchhHHH
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVS   94 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~krvs   94 (413)
                      +++|.||+||||||++++|.+.... ...|.|.....+..-......+++.|.+.-....+..+               .
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~-~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~---------------~   66 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK-NKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFEN---------------A   66 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh-cCCcEEEEEcCCccccccCccceeeecccCCCccCHHH---------------H
Confidence            7899999999999999999887652 22466655555543222223455665432211112111               3


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308           95 RAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHV  134 (413)
Q Consensus        95 ia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~  134 (413)
                      ++++|..+|+++++|||.   |..+...++ ....|+.+..
T Consensus        67 i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~~G~~v~~  104 (198)
T cd01131          67 LKAALRQDPDVILVGEMR---DLETIRLALTAAETGHLVMS  104 (198)
T ss_pred             HHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHHcCCEEEE
Confidence            566888899999999996   676665543 3345776543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=98.69  E-value=2.9e-07  Score=87.05  Aligned_cols=131  Identities=10%  Similarity=0.047  Sum_probs=103.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308          268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW---------LIKPQSIRLAIGAVLMKQKVASTITATIVL  338 (413)
Q Consensus       268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~---------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~  338 (413)
                      -+...|+++|.+.+++..++..+++..+.+++.+++.....         .++..++|.++++.+++.+.++.+.+++..
T Consensus        87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~  166 (236)
T TIGR01247        87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLML  166 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            46778999999999999999999999999988776654222         234568899999999999988888877765


Q ss_pred             HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 048308          339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYD  403 (413)
Q Consensus       339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~  403 (413)
                      +++        .+.+|+|++|+.+++|.+|+.|++-..-.++.     +..+.+.++++++++.+++.+++..
T Consensus       167 ~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       167 PMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS-----PTFPLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             HHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC-----cccchHHHHHHHHHHHHHHHHHHHH
Confidence            533        58999999999999999999999665444331     1245678899999999988887754

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.66  E-value=3.2e-08  Score=101.47  Aligned_cols=84  Identities=17%  Similarity=0.179  Sum_probs=67.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh----------hccccEEEEecCCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR----------TVKRKTGFVAHSNVF   70 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~----------~~~~~~~~v~q~~~~   70 (413)
                      +|+++ +.+.+||.++|+|+||+|||||+++|+|..++. ..-|.|-.++.+..+          ..+..+++++|++..
T Consensus       145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~  223 (434)
T PRK07196        145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESP  223 (434)
T ss_pred             eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCCh
Confidence            68899 999999999999999999999999999987643 233666666655421          123468999999999


Q ss_pred             CCCCCHHHHHHHHHHc
Q 048308           71 YLHLTVTETLVFIALF   86 (413)
Q Consensus        71 ~~~lTv~e~l~f~~~~   86 (413)
                      +..+++.|++.+.+..
T Consensus       224 ~~rl~a~e~a~~iAEy  239 (434)
T PRK07196        224 LMRIKATELCHAIATY  239 (434)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            9999999999776643

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.63  E-value=3.4e-07  Score=90.59  Aligned_cols=106  Identities=17%  Similarity=0.154  Sum_probs=65.9

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEEecCC-ccCCCCCHHHHHHHH
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFVAHSN-VFYLHLTVTETLVFI   83 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~f~   83 (413)
                      +++.+++|+.++|.||+|||||||+++|++.+++  ..|.+.+.... ......+.+..+.+.. .-....|..+.+.  
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~--~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~--  212 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK--DERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQ--  212 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc--cccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHH--
Confidence            4566789999999999999999999999999864  44666665321 1111123344333321 1133455555443  


Q ss_pred             HHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcE
Q 048308           84 ALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNS  131 (413)
Q Consensus        84 ~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~  131 (413)
                                   .+|-.+|+++++|||.+   ......+--+..|+.
T Consensus       213 -------------~~Lr~~pd~ii~gE~r~---~e~~~~l~a~~~g~~  244 (308)
T TIGR02788       213 -------------SCLRMRPDRIILGELRG---DEAFDFIRAVNTGHP  244 (308)
T ss_pred             -------------HHhcCCCCeEEEeccCC---HHHHHHHHHHhcCCC
Confidence                         35667999999999996   333322333445653

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.63  E-value=2e-07  Score=93.63  Aligned_cols=106  Identities=18%  Similarity=0.289  Sum_probs=68.5

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCc
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLP   89 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~   89 (413)
                      .+++.++.|.||+||||||+++++.+.+.. ...+.|..-..+..-......+.+.|.+.-....|..+           
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~-~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~-----------  186 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINK-NAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFAN-----------  186 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCc-CCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHH-----------
Confidence            357899999999999999999999886542 23466766555543222223334444332111222211           


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308           90 IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHV  134 (413)
Q Consensus        90 ~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~  134 (413)
                          .+..+|-.+|+++++||+.   |..++...+ ....|+.++.
T Consensus       187 ----~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~tGh~v~~  225 (343)
T TIGR01420       187 ----ALRAALREDPDVILIGEMR---DLETVELALTAAETGHLVFG  225 (343)
T ss_pred             ----HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHHcCCcEEE
Confidence                2445778899999999997   888887643 4446887653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.61  E-value=8.4e-08  Score=98.85  Aligned_cols=64  Identities=23%  Similarity=0.233  Sum_probs=51.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------------hhccccEEEEecCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------------RTVKRKTGFVAHSN   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------------~~~~~~~~~v~q~~   68 (413)
                      +++++ +.+.+|+.++|+|+||+|||||+++|+|..++  ..|.|.+.|+...            +..++.+.++.+.|
T Consensus       148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~  223 (438)
T PRK07721        148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD  223 (438)
T ss_pred             hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence            67889 99999999999999999999999999998864  5688888654321            12356688887654

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.59  E-value=3.6e-07  Score=86.67  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=29.1

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHH-HHHHhCCCCC
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTL-PTTLGGRLST   39 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTL-l~~l~g~~~~   39 (413)
                      +.+-+++|++++|.|+|||||||| ++.+++..+.
T Consensus        17 l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~   51 (230)
T PRK08533         17 LGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN   51 (230)
T ss_pred             hCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            456789999999999999999999 6888876543

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=98.55  E-value=1e-06  Score=83.27  Aligned_cols=134  Identities=9%  Similarity=0.118  Sum_probs=95.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH----------HHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 048308          268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW----------LIKPQSIRLAIGAVLMK---QKVASTITA  334 (413)
Q Consensus       268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~----------~l~~~~~g~~i~a~~~~---~~~A~~i~~  334 (413)
                      .+...|+++|.+..++..++..+++. +++++.|++.....          .+.+.+++.++++++++   .+.+..+++
T Consensus        76 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~  154 (232)
T TIGR00025        76 LPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN  154 (232)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            56789999999988888777655554 55677788864322          24456677777777754   444466666


Q ss_pred             HHHHHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 048308          335 TIVLQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALM  406 (413)
Q Consensus       335 ~~~~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~  406 (413)
                      +..++++        .+++|+|++|+.+++|++|+.+++-.--.++     .+....|.++++++++.+++..++....|
T Consensus       155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~-----~~~~~~~~~~~~l~~~~~v~~~la~~~~~  229 (232)
T TIGR00025       155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVS-----VDTFGAVRDLVVVLAFWVALAALAAIRLR  229 (232)
T ss_pred             HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCC-----CChhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6655543        5899999999999999999999876543332     23345688888888888888777766554


Q ss_pred             h
Q 048308          407 G  407 (413)
Q Consensus       407 ~  407 (413)
                      +
T Consensus       230 r  230 (232)
T TIGR00025       230 R  230 (232)
T ss_pred             c
Confidence            3

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.46  E-value=5.3e-07  Score=92.53  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      ++++ .+.+.+||.++|+|+||+|||||+++|++..+  ...|.|.+.|..
T Consensus       146 aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer  193 (432)
T PRK06793        146 SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER  193 (432)
T ss_pred             EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC
Confidence            3455 49999999999999999999999999999876  356777777654

>PRK14079 recF recombination protein F; Provisional

Probab=98.45  E-value=1.8e-06  Score=86.99  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             hHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           91 KRVSRAQELL---------INPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        91 krvsia~~l~---------~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      |++.+|..|+         .+|++++||||+++||...+..++
T Consensus       270 r~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~  312 (349)
T PRK14079        270 RTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALL  312 (349)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHH
Confidence            6788888888         899999999999999999999885

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.40  E-value=4.9e-07  Score=99.70  Aligned_cols=105  Identities=22%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             eeEEe-cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE-EEECC-cccChhccccEEEEecCCccCCCCCHHHHH-HH
Q 048308            7 RGVSS-LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN-IDYNN-NPLSRTVKRKTGFVAHSNVFYLHLTVTETL-VF   82 (413)
Q Consensus         7 s~~~~-~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~-i~~~g-~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l-~f   82 (413)
                      +..+. .+.++.|.|||++||||+||.++...-- .-.|. |--.. ..+ ..+.+...-+..++      ++.+.+ .|
T Consensus       320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~m-aq~G~~vpa~~~~~i-~~~~~i~~~ig~~~------si~~~lStf  391 (782)
T PRK00409        320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALM-AKSGLPIPANEPSEI-PVFKEIFADIGDEQ------SIEQSLSTF  391 (782)
T ss_pred             eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHH-HHhCCCcccCCCccc-cccceEEEecCCcc------chhhchhHH
Confidence            44443 4578999999999999999998643100 00110 00000 000 01111111111111      222222 23


Q ss_pred             HHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           83 IALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        83 ~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +..++   +++.|++++ ++|+++++|||++|+|+.....+
T Consensus       392 S~~m~---~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~al  428 (782)
T PRK00409        392 SGHMT---NIVRILEKA-DKNSLVLFDELGAGTDPDEGAAL  428 (782)
T ss_pred             HHHHH---HHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHH
Confidence            44332   677777777 89999999999999999877665

>TIGR00611 recf recF protein

Probab=98.38  E-value=2.2e-06  Score=86.81  Aligned_cols=46  Identities=28%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             hHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHH-Hh-cCCcEEEecC
Q 048308           91 KRVSRAQELLI---------NPSLLFLDEPASGLDSTIAKQIL-LN-SEGNSLHVGK  136 (413)
Q Consensus        91 krvsia~~l~~---------~p~llllDEPtsgLD~~~~~~i~-ll-~~G~~v~~G~  136 (413)
                      |++.+|..|+.         +|++++||||+++||...+..++ .+ ..|.+++.-+
T Consensus       282 r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~  338 (365)
T TIGR00611       282 RSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTA  338 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEe
Confidence            67889999998         99999999999999999999885 33 3445655533

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.37  E-value=2.6e-07  Score=84.01  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh--cc-ccEEEEecCCccCCCCCHHHHHHHHH
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VK-RKTGFVAHSNVFYLHLTVTETLVFIA   84 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~-~~~~~v~q~~~~~~~lTv~e~l~f~~   84 (413)
                      +||+++|+|+||||||||+++|++++.+      +.++|.+....  .+ ...++.+|+....+..++.++..+..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~   71 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL   71 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence            6999999999999999999999998753      46677654321  11 23456666655556777777776544

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.36  E-value=1.9e-06  Score=78.19  Aligned_cols=123  Identities=20%  Similarity=0.322  Sum_probs=68.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC---CCC---CeeEEEEECCcccCh----hc--cccEEEEecCCccCCCCCHHHHHH
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL---STG---ETRGNIDYNNNPLSR----TV--KRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~---~~~---~~~G~i~~~g~~~~~----~~--~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      -+|.|+|.||+||||||.+|+-..   ..|   ...|++...+.+...    .+  +...+|..-...++.-.+-.|.+.
T Consensus        38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~  117 (233)
T COG3910          38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD  117 (233)
T ss_pred             ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence            499999999999999999996432   222   123444444333221    11  113566655444443222111111


Q ss_pred             HHHHcCCch--------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecC
Q 048308           82 FIALFRLPI--------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGK  136 (413)
Q Consensus        82 f~~~~~~~~--------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~  136 (413)
                      --+..+.+.        -=+.+-..=..+.-+.+||||-++|-+.-+..++     +.+.|-++..-+
T Consensus       118 ~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiAT  185 (233)
T COG3910         118 GEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIAT  185 (233)
T ss_pred             hhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            001111111        1233334445788999999999999999998874     344565555443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.33  E-value=1.8e-06  Score=72.65  Aligned_cols=100  Identities=27%  Similarity=0.288  Sum_probs=54.5

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCchh
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIK   91 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~k   91 (413)
                      +|+.+.|.||+|+||||+++.|++...... .+.+.++............. ...........+..+.           .
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~   67 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELR-----------L   67 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHH-----------H
Confidence            478899999999999999999999875311 23455554432211000000 0000000001111111           1


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           92 RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        92 rvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +..+..+--.+|+++++||+..-.+........
T Consensus        68 ~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~  100 (148)
T smart00382       68 RLALALARKLKPDVLILDEITSLLDAEQEALLL  100 (148)
T ss_pred             HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence            222222333347999999999999988876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.33  E-value=1e-06  Score=91.63  Aligned_cols=91  Identities=23%  Similarity=0.385  Sum_probs=60.3

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      +++.+..++.|++++++||||+||||++..|++++..  .+|             .++++.+.+|.   ...++.|+|.+
T Consensus       246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~--~~G-------------~~kV~LI~~Dt---~RigA~EQLr~  307 (484)
T PRK06995        246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM--RHG-------------ASKVALLTTDS---YRIGGHEQLRI  307 (484)
T ss_pred             ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH--hcC-------------CCeEEEEeCCc---cchhHHHHHHH
Confidence            4566677888999999999999999999999987631  112             12467777764   45788999987


Q ss_pred             HHH-cCCch----hH--HHHHHHHhhCCCEEEEeCC
Q 048308           83 IAL-FRLPI----KR--VSRAQELLINPSLLFLDEP  111 (413)
Q Consensus        83 ~~~-~~~~~----kr--vsia~~l~~~p~llllDEP  111 (413)
                      .+. .+.+.    .+  ..++..=+.+-++++.|++
T Consensus       308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTa  343 (484)
T PRK06995        308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTI  343 (484)
T ss_pred             HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCC
Confidence            544 33332    22  2223333455577777774

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.27  E-value=4.9e-06  Score=77.82  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=19.4

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308          101 INPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus       101 ~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .++++++||||.++||...+..+.
T Consensus       157 ~~~p~~ilDEvd~~LD~~~~~~l~  180 (220)
T PF02463_consen  157 KPSPFLILDEVDAALDEQNRKRLA  180 (220)
T ss_dssp             S--SEEEEESTTTTS-HHHHHHHH
T ss_pred             cccccccccccccccccccccccc
Confidence            467999999999999999999884

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.25  E-value=1.2e-06  Score=65.58  Aligned_cols=34  Identities=32%  Similarity=0.431  Sum_probs=27.5

Q ss_pred             ccceeEEec-CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            4 KGIRGVSSL-GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         4 ~~vs~~~~~-Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.++.+.+ |++++|.||||||||||+++|.=.+
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345667775 5799999999999999999986543

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=98.23  E-value=2.4e-05  Score=75.12  Aligned_cols=133  Identities=10%  Similarity=-0.044  Sum_probs=95.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048308          268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW----------LIKPQSIRLAIGAVLMKQKVASTITATIV  337 (413)
Q Consensus       268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~  337 (413)
                      -+...+.+||++.+.-..++..++...+.+++ |..+....          .++..++|.++|+++++.+.+..+.++++
T Consensus        99 v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~  177 (253)
T TIGR01291        99 ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVI  177 (253)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            36678999999988766666666555554444 44333221          34456899999999999999888877777


Q ss_pred             HHHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 048308          338 LQYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMG  407 (413)
Q Consensus       338 ~~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~  407 (413)
                      .+++        .+.+|+|++|+.+++|+.|..|++=..-+++.      ..+.|.++++++++.+++..++....|+
T Consensus       178 ~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------~~~~~~~~~~l~~~~vv~~~la~~~fr~  249 (253)
T TIGR01291       178 TPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------GTQVGLHLGALCLYAVVPFFISAALLRR  249 (253)
T ss_pred             HHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6654        58999999999999999999999765544431      1234667888888888877776655544

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>PRK13695 putative NTPase; Provisional

Probab=98.23  E-value=5.1e-06  Score=75.05  Aligned_cols=44  Identities=9%  Similarity=0.128  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308           91 KRVSRAQELLINPSLLFLDE--PASGLDSTIAKQIL-LNSEGNSLHV  134 (413)
Q Consensus        91 krvsia~~l~~~p~llllDE--PtsgLD~~~~~~i~-ll~~G~~v~~  134 (413)
                      .+..+.+..+.+|+++++||  |+.++|......+. ++..|+.+..
T Consensus        85 ~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~  131 (174)
T PRK13695         85 IGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIA  131 (174)
T ss_pred             HHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEE
Confidence            35556666778999999999  66677766555552 3356665544

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.22  E-value=1.7e-06  Score=88.99  Aligned_cols=65  Identities=22%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC---cccC--------hhccccEEEEecCCc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN---NPLS--------RTVKRKTGFVAHSNV   69 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g---~~~~--------~~~~~~~~~v~q~~~   69 (413)
                      +++.++ .+.+||.++|+||||||||||+++|++..++  ..|.|.+.|   ++..        +..++.+++|.|.|.
T Consensus       155 aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p--d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        155 VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF--DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence            456675 8999999999999999999999999998763  568887754   4332        122356899999874

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.21  E-value=5.8e-07  Score=87.93  Aligned_cols=73  Identities=15%  Similarity=0.223  Sum_probs=50.9

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR   87 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~   87 (413)
                      .+++|.||||||||||+++|.+++...+.+|.+.+   +|.-......+..+.. |+..+.+++++.+.+.+...++
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence            69999999999999999999988752223455544   4433332222334543 6667788999999998877664

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.16  E-value=2e-06  Score=81.29  Aligned_cols=75  Identities=20%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE----EEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN----IDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALF   86 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~----i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~   86 (413)
                      .+..+++|.||||||||||.+.|++.+++  ..|.    |..++........+..+++++.+ .....++.+.+.+...+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~--~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l  107 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ--DGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRL  107 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhh--ccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999998863  3455    55555433333333456666533 44678888888776655


Q ss_pred             CC
Q 048308           87 RL   88 (413)
Q Consensus        87 ~~   88 (413)
                      +.
T Consensus       108 ~~  109 (229)
T PRK09270        108 RA  109 (229)
T ss_pred             Hc
Confidence            43

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.10  E-value=1.2e-06  Score=82.43  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=41.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE---EECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---DYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR   87 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i---~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~   87 (413)
                      +++|.|+||||||||.+.|++.+......+.+   ..+|.-......+..+.. |...+.+++++.....+...++
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~-~~~g~p~~~d~~~l~~~L~~l~   75 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLM-DRKGFPESYDMEALLKFLKDIK   75 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhh-hcCCCcccCCHHHHHHHHHHHH
Confidence            57999999999999999999987521112333   335543222212223333 3334456666666555544433

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.09  E-value=3.9e-06  Score=76.75  Aligned_cols=50  Identities=26%  Similarity=0.454  Sum_probs=35.9

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHS   67 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~   67 (413)
                      |++++|+||||||||||++.|++...+     .+.+++.....    ..++.+++++|+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYITRPASAGSENHIALSEQE   55 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEECCCccchhHHhheeEcHHH
Confidence            789999999999999999999998642     46666654432    122345666665

>PRK01889 GTPase RsgA; Reviewed

Probab=98.08  E-value=3.2e-06  Score=85.30  Aligned_cols=68  Identities=24%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCC
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~l   74 (413)
                      .+.-.+++|++++++|+||+|||||+|+|+|...  ...|+|..++.... ....+.+.+++|+..++.+-
T Consensus       187 ~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dtp  255 (356)
T PRK01889        187 VLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTP  255 (356)
T ss_pred             HHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCCC
Confidence            3444567999999999999999999999999876  46799998875432 23345678888877666543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.08  E-value=4.6e-06  Score=82.83  Aligned_cols=70  Identities=11%  Similarity=0.056  Sum_probs=48.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--------h--hccccEEEEecCCccCCCCCHHHHH
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--------R--TVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--------~--~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|++++++||||+||||++..|++.+..  ..+.|.+-+.+..        .  ..++.+.+++|.....|..++.+++
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l  189 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI  189 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence            57899999999999999999999998752  3467776554321        1  1234578888865555555556665


Q ss_pred             HH
Q 048308           81 VF   82 (413)
Q Consensus        81 ~f   82 (413)
                      ..
T Consensus       190 ~~  191 (318)
T PRK10416        190 QA  191 (318)
T ss_pred             HH
Confidence            43

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.08  E-value=3.3e-06  Score=85.01  Aligned_cols=112  Identities=22%  Similarity=0.249  Sum_probs=70.0

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEE------EECCcccCh--------hccc--cEEEEecCCccC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGE---TRGNI------DYNNNPLSR--------TVKR--KTGFVAHSNVFY   71 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~---~~G~i------~~~g~~~~~--------~~~~--~~~~v~q~~~~~   71 (413)
                      +||++++++|.||-||||-+++++|+.++..   ..+-.      .+-|.++..        ..+.  +-.||.|-+...
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~  177 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV  177 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence            7999999999999999999999999987521   11111      111211111        0110  012222222111


Q ss_pred             CCCCHHHHHHHHHHc----------CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           72 LHLTVTETLVFIALF----------RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        72 ~~lTv~e~l~f~~~~----------~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                       ..+|+++|.--..-          .+              ..||.+||.+-+.+.++.++|||.+-||...+.+-
T Consensus       178 -k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLka  252 (592)
T KOG0063|consen  178 -KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKA  252 (592)
T ss_pred             -HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhH
Confidence             23566655422111          00              12899999999999999999999999999887553

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.07  E-value=8.2e-06  Score=71.29  Aligned_cols=33  Identities=39%  Similarity=0.704  Sum_probs=24.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN   49 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~   49 (413)
                      +++|.|+||+||||+++.+++....  ..+.+.+-
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~   33 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYV   33 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEE
Confidence            4789999999999999999887542  23444443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.07  E-value=4.7e-06  Score=79.98  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLST   39 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~   39 (413)
                      .+.+||.++|+||+|+|||||++.+++....
T Consensus        12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            5689999999999999999999999988753

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.06  E-value=8.7e-06  Score=82.13  Aligned_cols=106  Identities=17%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCC-eeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGE-TRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTETLVFIALF   86 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~   86 (413)
                      ++|.+++|.||+||||||++++|.+.+.... ..+.|.....+..-   ..+...+.+.|...--...+..+.+.     
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~-----  206 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVR-----  206 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHH-----
Confidence            5899999999999999999999998764211 12355444444431   12223467777643111122222221     


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEe
Q 048308           87 RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHV  134 (413)
Q Consensus        87 ~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~  134 (413)
                                .+|=.+|+++++.|-=   |..++...+ ....|+.++.
T Consensus       207 ----------~aLR~~Pd~i~vGEiR---d~et~~~al~aa~tGh~v~t  242 (358)
T TIGR02524       207 ----------NALRRKPHAILVGEAR---DAETISAALEAALTGHPVYT  242 (358)
T ss_pred             ----------HHhccCCCEEeeeeeC---CHHHHHHHHHHHHcCCcEEE
Confidence                      2566799999999943   777775443 4456876643

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.05  E-value=5.7e-06  Score=76.22  Aligned_cols=24  Identities=38%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++|.||||||||||.++|++.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            579999999999999999999873

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00235 udk uridine kinase

Probab=98.04  E-value=1.8e-06  Score=80.29  Aligned_cols=28  Identities=36%  Similarity=0.503  Sum_probs=26.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|++++|.||||||||||++.|++.++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            6899999999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=1.8e-05  Score=80.03  Aligned_cols=107  Identities=24%  Similarity=0.368  Sum_probs=69.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      ++++.+..++.|++++++||||+||||++..|+++...  ..|             .+.++++..|..   .....|.|.
T Consensus       126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~--~~G-------------~~~V~lit~D~~---R~ga~EqL~  187 (374)
T PRK14722        126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVM--RFG-------------ASKVALLTTDSY---RIGGHEQLR  187 (374)
T ss_pred             hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC-------------CCeEEEEecccc---cccHHHHHH
Confidence            45667788999999999999999999999999986420  001             134666664433   235567775


Q ss_pred             H-HHHcCCch------hHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHh
Q 048308           82 F-IALFRLPI------KRVSRAQELLINPSLLFLDEP-ASGLDSTIAKQILLN  126 (413)
Q Consensus        82 f-~~~~~~~~------krvsia~~l~~~p~llllDEP-tsgLD~~~~~~i~ll  126 (413)
                      . +..++.|.      +.+..+..=+.+.+++++|+| .+..|.....++-.+
T Consensus       188 ~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L  240 (374)
T PRK14722        188 IFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAML  240 (374)
T ss_pred             HHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHH
Confidence            4 44444443      223333333578899999999 445677665555433

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.01  E-value=8.1e-06  Score=91.24  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308           91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i  123 (413)
                      ||+.||++|+.+|  ++++|||||+|||+..+.++
T Consensus       494 QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L  528 (924)
T TIGR00630       494 QRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL  528 (924)
T ss_pred             HHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH
Confidence            8999999999986  89999999999999999877

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK15066 inner membrane transport permease; Provisional

Probab=98.00  E-value=0.00014  Score=69.85  Aligned_cols=139  Identities=12%  Similarity=0.005  Sum_probs=96.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChHH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048308          268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTPW---------LIKPQSIRLAIGAVLMKQKVASTITATIVL  338 (413)
Q Consensus       268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~---------~l~~~~~g~~i~a~~~~~~~A~~i~~~~~~  338 (413)
                      .+...+.+++++...-..++..++..++.+...|.++....         .+.....|.++|++.++.+....+.++++.
T Consensus       101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~~~  180 (257)
T PRK15066        101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFVLT  180 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            46667788888877655555555444444444466543211         111223477888888888887777776666


Q ss_pred             HHh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308          339 QYL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGR  410 (413)
Q Consensus       339 ~~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~  410 (413)
                      +++        .+++|+|++|+.+++|++|..|++=..-+++      +..+.|.++++++++.+++.+++....|+.++
T Consensus       181 pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~  254 (257)
T PRK15066        181 PLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG  254 (257)
T ss_pred             HHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            544        5789999999999999999999886443322      11245888999999999999999888887665


Q ss_pred             cC
Q 048308          411 IS  412 (413)
Q Consensus       411 ~~  412 (413)
                      .+
T Consensus       255 ~~  256 (257)
T PRK15066        255 LR  256 (257)
T ss_pred             cC
Confidence            43

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.99  E-value=9.5e-06  Score=90.87  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308           91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i  123 (413)
                      ||+.||++|..+|  ++++|||||+|||+..+.++
T Consensus       496 QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L  530 (943)
T PRK00349        496 QRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRL  530 (943)
T ss_pred             HHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHH
Confidence            8999999999997  99999999999999999887

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.95  E-value=2.2e-05  Score=82.32  Aligned_cols=121  Identities=18%  Similarity=0.241  Sum_probs=75.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhcc---ccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK---RKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~---~~~~~v~q~~~~~~~lTv~e   78 (413)
                      ++++++..+..|+.++++||||+|||||++.|+|.++  +.+|++.+.+..+.....   ..-.. .+.+.--|+-|   
T Consensus       199 ~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp--p~~g~e~le~~~i~s~~g~~~~~~~~-~~rPfr~ph~~---  272 (506)
T PRK09862        199 GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP--DLSNEEALESAAILSLVNAESVQKQW-RQRPFRSPHHS---  272 (506)
T ss_pred             HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC--CCCCcEEEecchhhhhhccccccCCc-CCCCccCCCcc---
Confidence            4678899999999999999999999999999999987  467887777655421100   00111 12222223333   


Q ss_pred             HHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcE
Q 048308           79 TLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNS  131 (413)
Q Consensus        79 ~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~  131 (413)
                       ...++..+.. ....-+.--..+--+||+||- .-++...+..+. .|.+|++
T Consensus       273 -~s~~~l~GGg-~~~~pG~l~~A~gGvLfLDEi-~e~~~~~~~~L~~~LE~g~v  323 (506)
T PRK09862        273 -ASLTAMVGGG-AIPGPGEISLAHNGVLFLDEL-PEFERRTLDALREPIESGQI  323 (506)
T ss_pred             -chHHHHhCCC-ceehhhHhhhccCCEEecCCc-hhCCHHHHHHHHHHHHcCcE
Confidence             3334444432 112223233345589999996 557777776664 5666765

>PRK08149 ATP synthase SpaL; Validated

Probab=97.94  E-value=9.6e-06  Score=83.24  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccCh--------hccccEEEEecCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSR--------TVKRKTGFVAHSN   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~   68 (413)
                      +++++ +.+.+||.++|+|+||+|||||+++|++..++. .+.|.|..+|++..+        ...+++++|....
T Consensus       141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s  215 (428)
T PRK08149        141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS  215 (428)
T ss_pred             EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence            67888 999999999999999999999999999987643 245889999987632        1224566666543

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.93  E-value=4.6e-06  Score=77.08  Aligned_cols=107  Identities=14%  Similarity=0.108  Sum_probs=64.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCch
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI   90 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~   90 (413)
                      ++|++++|+|+||||||||.+.|++++.. ...|.+.++|.+........++|.+|+.        .+++.         
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~~--------~~~~~---------   83 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDADR--------KENIR---------   83 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCcccH--------HHHHH---------
Confidence            68899999999999999999999997642 2347899998765433223356665543        23221         


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc-CCc-EEEecCc
Q 048308           91 KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS-EGN-SLHVGKG  137 (413)
Q Consensus        91 krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~-~G~-~v~~G~~  137 (413)
                      +...+|+.++..-.+++.  .+.+++...+..+. ++. .|. +||...+
T Consensus        84 ~l~~~a~~~~~~G~~VI~--~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~  131 (198)
T PRK03846         84 RVGEVAKLMVDAGLVVLT--AFISPHRAERQMVRERLGEGEFIEVFVDTP  131 (198)
T ss_pred             HHHHHHHHHhhCCCEEEE--EeCCCCHHHHHHHHHHcccCCEEEEEEcCC
Confidence            122355555554444443  34556656665554 333 344 3555443

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=97.91  E-value=1.3e-05  Score=74.28  Aligned_cols=31  Identities=29%  Similarity=0.483  Sum_probs=26.5

Q ss_pred             HHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHH
Q 048308           94 SRAQELLINP---SLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        94 sia~~l~~~p---~llllDEPtsgLD~~~~~~i~  124 (413)
                      .+...+...+   .++++|||-++|++..+.+++
T Consensus       246 ~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~  279 (303)
T PF13304_consen  246 SLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI  279 (303)
T ss_dssp             HHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH
T ss_pred             HHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH
Confidence            6777776655   899999999999999998884

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.90  E-value=6.3e-05  Score=67.98  Aligned_cols=26  Identities=46%  Similarity=0.758  Sum_probs=24.0

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |++++|+||||||||||++.|++.+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            68999999999999999999999864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.85  E-value=1.1e-05  Score=74.46  Aligned_cols=28  Identities=43%  Similarity=0.572  Sum_probs=26.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|++++|+||||||||||++.|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            6899999999999999999999999864

>PLN02796 D-glycerate 3-kinase

Probab=97.84  E-value=7.3e-06  Score=81.67  Aligned_cols=53  Identities=23%  Similarity=0.284  Sum_probs=41.5

Q ss_pred             ccccceeEE---ecCcE-----EEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccC
Q 048308            2 ILKGIRGVS---SLGEL-----LAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLS   54 (413)
Q Consensus         2 iL~~vs~~~---~~Ge~-----~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~   54 (413)
                      ++++++..+   ++|+.     ++|.|+||||||||++.|.+.++. +...|.|.++|....
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            355666665   57776     999999999999999999998864 234688888887654

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=97.83  E-value=0.0004  Score=66.44  Aligned_cols=130  Identities=8%  Similarity=0.069  Sum_probs=90.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCChH-H----------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048308          268 FRLSSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKSTTP-W----------LIKPQSIRLAIGAVLMKQKVASTITATI  336 (413)
Q Consensus       268 Y~~~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~-~----------~l~~~~~g~~i~a~~~~~~~A~~i~~~~  336 (413)
                      .+...+.++++++..-..++..+++.++.+.. |.++... .          .++..++|.++|+++++.+.++.+.+++
T Consensus        99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~  177 (253)
T TIGR03861        99 LPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV  177 (253)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            46778899999999877777665555544433 6554421 1          3455679999999999998888877766


Q ss_pred             HHHHh--------hc---cCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 048308          337 VLQYL--------LQ---RLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDAL  405 (413)
Q Consensus       337 ~~~~~--------~~---~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L  405 (413)
                      +.+++        .+   ++|+|++|+.+++|++|..|++=.--+++         ..|..+.+++++.+++..++....
T Consensus       178 ~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g~---------~~~~~~~~~~~~~~v~~~~~~~~f  248 (253)
T TIGR03861       178 IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYGQ---------LNLPALGWTLGATTLFTLLAFWGF  248 (253)
T ss_pred             HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhCC---------cchhHHHHHHHHHHHHHHHHHHHh
Confidence            55543        23   45899999999999999999885442221         125566777788777777776665


Q ss_pred             Hh
Q 048308          406 MG  407 (413)
Q Consensus       406 ~~  407 (413)
                      |+
T Consensus       249 r~  250 (253)
T TIGR03861       249 DP  250 (253)
T ss_pred             hc
Confidence            54

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=97.80  E-value=0.00039  Score=66.13  Aligned_cols=135  Identities=13%  Similarity=0.092  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccccccCCC--hHH--------HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHH
Q 048308          271 SSYFVAKTIGDLPMELTLPTVFVVVTYWMARIKST--TPW--------LIKPQSIRLAIG-AVLMKQKVASTITATIVLQ  339 (413)
Q Consensus       271 ~ay~lA~~l~~lP~~~~~~~if~~i~Y~m~gl~~~--~~~--------~l~~~~~g~~i~-a~~~~~~~A~~i~~~~~~~  339 (413)
                      ..+++++.+...-...+...+...++.+..|....  ...        .+...++|.+++ ....+.+.+..++.++..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~  210 (286)
T COG0842         131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILP  210 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34566666666555555555555555555553322  221        345667777555 3556677787777666655


Q ss_pred             Hh--------hccCcchhhhhhccCHHHHHHHHHHHhhcCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048308          340 YL--------LQRLPVFTSWFEYASLTYYSYRLLLPSQYKANDTCYAGLSHQIICVAALAVMLLGSRLAAYDALMGIGR  410 (413)
Q Consensus       340 ~~--------~~~ip~~~~W~~yiS~~~Y~~eal~~nef~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~  410 (413)
                      +.        .+.+|.|++|+.++.|..|+.|++-.....+..     .++.|.++++++++.+.+.+++...+|+.++
T Consensus       211 ~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~  284 (286)
T COG0842         211 LGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-----NDGIWISLLILLLFAVVFLLLGLLLLRRRRK  284 (286)
T ss_pred             HHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            43        589999999999999999999999877666531     1237889999999999999999999988655

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.79  E-value=6e-06  Score=74.06  Aligned_cols=60  Identities=18%  Similarity=0.199  Sum_probs=40.6

Q ss_pred             ECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHHHHHHHH
Q 048308           19 LGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTETLVFIA   84 (413)
Q Consensus        19 lG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l~f~~   84 (413)
                      ||+|||||||++++|++++      |.+.++|.....   ..+...++.+|++...+.+++.++..+..
T Consensus         1 ~G~sGsGKSTla~~la~~l------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   63 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAM   63 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence            6999999999999999986      345666643211   22233577777765566667777666543

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=97.79  E-value=3.1e-05  Score=76.99  Aligned_cols=46  Identities=24%  Similarity=0.295  Sum_probs=39.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN   50 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g   50 (413)
                      +++++ +.+.+||.++|+|+||+|||||+++|+|..++  ..|.+..-|
T Consensus        59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~--~~~vi~~iG  104 (326)
T cd01136          59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTA--DVNVIALIG  104 (326)
T ss_pred             EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEe
Confidence            57888 99999999999999999999999999998864  346555544

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.78  E-value=5.6e-05  Score=71.57  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      .|=+++|+++.|.|+||||||||...++
T Consensus        19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~   46 (234)
T PRK06067         19 GGGIPFPSLILIEGDHGTGKSVLSQQFV   46 (234)
T ss_pred             CCCCcCCcEEEEECCCCCChHHHHHHHH
Confidence            5668999999999999999999988874

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.75  E-value=9.4e-05  Score=71.06  Aligned_cols=36  Identities=36%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             cccceeEEecCc-EEEEECCCCCCHHHHHHHHhCCCC
Q 048308            3 LKGIRGVSSLGE-LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         3 L~~vs~~~~~Ge-~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++.++..+++|+ +++|.||||+|||||++.+.+.++
T Consensus        32 ~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        32 MAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            344445555555 999999999999999999988765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.74  E-value=2.6e-05  Score=82.39  Aligned_cols=63  Identities=21%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      -+++|.||||||||||++.|++.++   ..|.|.++|....   .+...+.+|++..++..++.|+|.-
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglLp---~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L~enL~~  128 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFMP---SIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTLLDNIHD  128 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhCC---CcEEEEEcceecc---hhhhCccCCChhhcchhHHHHHHHH
Confidence            4899999999999999999999874   4688999886421   1235567777777777888888854

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.74  E-value=4.3e-05  Score=78.85  Aligned_cols=48  Identities=23%  Similarity=0.328  Sum_probs=42.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      +++++ +.+.+||.++|+|+||+|||||+++|++..++  ..|.+...|..
T Consensus       153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~--d~~vi~~iGer  200 (441)
T PRK09099        153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQC--DVNVIALIGER  200 (441)
T ss_pred             eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CeEEEEEEccC
Confidence            67889 99999999999999999999999999998763  45888877754

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=7.1e-05  Score=76.85  Aligned_cols=87  Identities=22%  Similarity=0.395  Sum_probs=53.2

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH-Hc
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS--TGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA-LF   86 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~--~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~-~~   86 (413)
                      +++|++++++||||+||||+++.|+++..  .+..                 .++.+..+..   .....|.+.+.+ .+
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~-----------------~v~~i~~d~~---rigalEQL~~~a~il  247 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGAD-----------------KVALLTTDSY---RIGGHEQLRIYGKLL  247 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-----------------eEEEEecCCc---chhHHHHHHHHHHHc
Confidence            47899999999999999999999998631  0111                 1233332221   123344443333 33


Q ss_pred             CCch------hHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           87 RLPI------KRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        87 ~~~~------krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ++|.      ..+..+..-+.+.++++.|.  .|.-..
T Consensus       248 Gvp~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqr  283 (420)
T PRK14721        248 GVSVRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQR  283 (420)
T ss_pred             CCceecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcc
Confidence            4332      23445555678889999996  477654

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.72  E-value=2.7e-05  Score=70.34  Aligned_cols=26  Identities=46%  Similarity=0.589  Sum_probs=24.2

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |++++|+||||||||||++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.71  E-value=7.4e-05  Score=77.03  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=40.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN   51 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~   51 (413)
                      +++++ +.+.+|+.++|+|+||+|||||+++|++..++  ..|.+...|.
T Consensus       135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~iG~  181 (422)
T TIGR02546       135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASA--DVNVIALIGE  181 (422)
T ss_pred             eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEcc
Confidence            67889 99999999999999999999999999998763  4576666443

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.70  E-value=8.3e-06  Score=73.96  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ..+++|+|+|||||||+.+.|+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999943

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=97.70  E-value=5.7e-05  Score=77.85  Aligned_cols=61  Identities=16%  Similarity=0.155  Sum_probs=47.5

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccChh-------ccccEEEEecCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLSRT-------VKRKTGFVAHSN   68 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~-------~~~~~~~v~q~~   68 (413)
                      +.+.+||.++|+|+||+|||||+++|+|..++. .+.|.|..+|.+..+.       ..+..+.|.|+.
T Consensus       170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~  238 (455)
T PRK07960        170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP  238 (455)
T ss_pred             ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence            889999999999999999999999999988753 2458999999876431       123456666654

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.69  E-value=3.8e-05  Score=79.24  Aligned_cols=51  Identities=18%  Similarity=0.233  Sum_probs=41.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCccc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPL   53 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~   53 (413)
                      +++++ +.+.+||.++|+|+||+|||||+++|+|..++. .+.|.|-..|.+.
T Consensus       158 aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev  209 (451)
T PRK05688        158 SINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREV  209 (451)
T ss_pred             eecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhH
Confidence            57788 999999999999999999999999999987643 2346676666544

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=97.68  E-value=4.2e-05  Score=78.71  Aligned_cols=48  Identities=17%  Similarity=0.251  Sum_probs=41.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      +++++ +.+.+||.++|+|+||+|||||+++|++..++  ..|.+.+.|..
T Consensus       145 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~--d~~vi~~iGeR  192 (433)
T PRK07594        145 AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA--DSNVLVLIGER  192 (433)
T ss_pred             eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCC--CEEEEEEECCC
Confidence            67888 99999999999999999999999999998764  45777766653

>cd00879 Sar1 Sar1 subfamily

Probab=97.68  E-value=4.1e-05  Score=69.46  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +|++++.+.+++++ +|+|++|||||||++.+.+.
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~   42 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDD   42 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcC
Confidence            47888889888887 99999999999999999874

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.67  E-value=4.9e-05  Score=70.62  Aligned_cols=27  Identities=37%  Similarity=0.489  Sum_probs=25.1

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++.+++|.|+||||||||.+.|++.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            478899999999999999999999876

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.67  E-value=0.00028  Score=63.77  Aligned_cols=37  Identities=19%  Similarity=0.061  Sum_probs=25.1

Q ss_pred             HHhhCCCEEEEeCCCCCCC---HHHHHHHH-----HhcCCcEEEe
Q 048308           98 ELLINPSLLFLDEPASGLD---STIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        98 ~l~~~p~llllDEPtsgLD---~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ....+|+++++|||++.+|   ......+.     +.+.|.++..
T Consensus        91 ~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~  135 (187)
T cd01124          91 IEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLL  135 (187)
T ss_pred             HHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEE
Confidence            3457899999999999999   54444441     3345665444

A related protein is found in archaea.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=9.9e-05  Score=80.55  Aligned_cols=37  Identities=35%  Similarity=0.604  Sum_probs=32.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++++.++.+++|++++++||||+||||++..|++++.
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~  210 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV  210 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence            4667788888899999999999999999999999863

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.63  E-value=5.8e-05  Score=77.49  Aligned_cols=47  Identities=23%  Similarity=0.131  Sum_probs=40.6

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      |.++.+.+||.++|+|+||+|||||+++|++..++  ..|.|...|...
T Consensus       132 D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~--~~gvi~~iGer~  178 (418)
T TIGR03498       132 DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDA--DVVVIALVGERG  178 (418)
T ss_pred             eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEeeec
Confidence            46899999999999999999999999999998763  568887777643

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.62  E-value=0.00012  Score=72.18  Aligned_cols=68  Identities=24%  Similarity=0.288  Sum_probs=45.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hc-cccEEEEecCCccC----CCCCHHHHH
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TV-KRKTGFVAHSNVFY----LHLTVTETL   80 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~-~~~~~~v~q~~~~~----~~lTv~e~l   80 (413)
                      +|++++++|+||+|||||+|.|.|....  ..|+|..   .|+....   .. ....+++.+.+-+.    ..++.+|..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~--~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~  240 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLEL--KTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELE  240 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCC--CCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHH
Confidence            5899999999999999999999998653  4577765   3332221   11 12346777766554    456666544


Q ss_pred             H
Q 048308           81 V   81 (413)
Q Consensus        81 ~   81 (413)
                      .
T Consensus       241 ~  241 (298)
T PRK00098        241 H  241 (298)
T ss_pred             H
Confidence            3

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.61  E-value=0.0001  Score=72.30  Aligned_cols=72  Identities=24%  Similarity=0.308  Sum_probs=47.8

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hccc-cEEEEecCCcc---C-CCCCHH
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TVKR-KTGFVAHSNVF---Y-LHLTVT   77 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~~~-~~~~v~q~~~~---~-~~lTv~   77 (413)
                      .++ +++++++|+||+|||||+|.|.|....  ..|++..   .|.....   ..+. ..+++.+.+-+   . ..++..
T Consensus       158 ~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~--~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~  234 (287)
T cd01854         158 YLK-GKTSVLVGQSGVGKSTLINALLPDLDL--ATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPE  234 (287)
T ss_pred             hhc-cceEEEECCCCCCHHHHHHHHhchhhc--cccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHH
Confidence            344 589999999999999999999998752  4577754   2322211   1222 25677777655   2 567888


Q ss_pred             HHHHHH
Q 048308           78 ETLVFI   83 (413)
Q Consensus        78 e~l~f~   83 (413)
                      |...+-
T Consensus       235 ~~~~~f  240 (287)
T cd01854         235 ELAHYF  240 (287)
T ss_pred             HHHHHh
Confidence            877543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.59  E-value=7e-05  Score=77.46  Aligned_cols=46  Identities=22%  Similarity=0.279  Sum_probs=38.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN   50 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g   50 (413)
                      +++++ +.+.+||.++|+|+||+|||||+++|++..++  ..|.+...|
T Consensus       153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~iG  198 (440)
T TIGR01026       153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA--DVNVIALIG  198 (440)
T ss_pred             eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CEEEEEEEe
Confidence            57777 99999999999999999999999999998764  345544444

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.57  E-value=5.1e-05  Score=68.94  Aligned_cols=32  Identities=34%  Similarity=0.459  Sum_probs=25.9

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++++.+.|| +++|.||||+||||++.+|.-
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~   41 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRY   41 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            46777888887 999999999999999998843

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.56  E-value=0.00011  Score=75.56  Aligned_cols=49  Identities=20%  Similarity=0.224  Sum_probs=41.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      +++++ +.+.+||.++|+|+||+|||||+++|++..++  ..|.|...|...
T Consensus       127 ~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~--~~gvi~~~Ger~  175 (413)
T TIGR03497       127 AIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKA--DINVIALIGERG  175 (413)
T ss_pred             eeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CeEEEEEEccch
Confidence            57788 99999999999999999999999999998763  457777777543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.56  E-value=9.8e-05  Score=76.04  Aligned_cols=49  Identities=20%  Similarity=0.173  Sum_probs=40.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      +++++ +.+.+|+.++|+|+||+|||||+++|++..+  ...+.|...|...
T Consensus       147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~--~~v~vi~~iGerg  195 (434)
T PRK08472        147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL--APIKVVALIGERG  195 (434)
T ss_pred             Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC--CCEEEEEeeCccc
Confidence            47788 9999999999999999999999999998765  3457777666543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.55  E-value=0.00018  Score=60.97  Aligned_cols=26  Identities=38%  Similarity=0.622  Sum_probs=24.0

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..+.|.||+|+|||||++.+++..
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999999875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.55  E-value=0.0003  Score=70.64  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=59.6

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEE-ecCCccCCCCCHHHHHHHHHHcC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFV-AHSNVFYLHLTVTETLVFIALFR   87 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v-~q~~~~~~~lTv~e~l~f~~~~~   87 (413)
                      ++.+..+.|.||+|||||||+++|.+..++  .++.+.+.... ......+.+... .++..-....|..+.+..     
T Consensus       159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~--~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~-----  231 (344)
T PRK13851        159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPP--QERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA-----  231 (344)
T ss_pred             HHcCCeEEEECCCCccHHHHHHHHHcccCC--CCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHH-----
Confidence            567889999999999999999999998864  34555554321 111112222222 222111234555555432     


Q ss_pred             CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCc
Q 048308           88 LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGN  130 (413)
Q Consensus        88 ~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~  130 (413)
                                +|=.+|+.+++.|--.   ..+...+-.+..|+
T Consensus       232 ----------~LR~~pD~IivGEiR~---~ea~~~l~a~~tGh  261 (344)
T PRK13851        232 ----------SLRMRPDRILLGEMRD---DAAWAYLSEVVSGH  261 (344)
T ss_pred             ----------HhcCCCCeEEEEeeCc---HHHHHHHHHHHhCC
Confidence                      3445899999999874   33333333444555

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.52  E-value=5.5e-05  Score=69.80  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=24.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN   49 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~   49 (413)
                      ++|+|+||+|||||+|+|.|...+  .+|.+..+
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~--~~~~~~~~   35 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHE--EEGAAPTG   35 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCC--CCCccccC
Confidence            689999999999999999997542  33554443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	413
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		6e-06
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		6e-06
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		2e-05
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		2e-05
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		2e-05
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		5e-05
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		5e-05
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		7e-05
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		1e-04
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		2e-04
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		2e-04
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-04

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 46/182 (25%)
Query: 3   LKGIRGVS---SLGELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNIDYNNNPLSRT 56
           +K + GVS     GE +A+LGPSG GKTT    L G  + ++GE    ++  N+ P    
Sbjct: 16  VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY- 74
Query: 57  VKRKTGFVAHSNVFYLHLTVTETLVF------------------IA--------LFRLPI 90
             R+ G V  +   Y H+TV E + F                  IA        L R P 
Sbjct: 75  --REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 91  -------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSY 143
                  +RV+ A+ L+  P +L  DEP S LD+ +  ++++ +E    H+ +  G+ S 
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL--RMIMRAEIK--HLQQELGITSV 188
Query: 144 FV 145
           +V
Sbjct: 189 YV 190

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 37/140 (26%)
Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVF 70
           GE +A+LGPSG GK+TL  T+ G      T G I ++   ++      R  G V  +   
Sbjct: 29  GEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVTELPPKDRNVGLVFQNWAL 86
Query: 71  YLHLTVTETLVF-IALFRLP--------------------------------IKRVSRAQ 97
           Y H+TV + + F + L + P                                 +RV+ A+
Sbjct: 87  YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR 146
Query: 98  ELLINPSLLFLDEPASGLDS 117
            L+  P +L LDEP S LD+
Sbjct: 147 ALVKEPEVLLLDEPLSNLDA 166

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 61/151 (40%), Gaps = 47/151 (31%)
Query: 13  GELLAILGPSGRGKTT-------LPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA 65
           GE +  +GPSG GK+T       L T   G L  GE R     N+ P     +R  G V 
Sbjct: 29  GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR----MNDTP---PAERGVGMVF 81
Query: 66  HSNVFYLHLTVTETLVF------------------IA--------LFRLPI-------KR 92
            S   Y HL+V E + F                  +A        L R P        +R
Sbjct: 82  QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR 141
Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           V+  + L+  PS+  LDEP S LD+ +  Q+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 61/151 (40%), Gaps = 47/151 (31%)
Query: 13  GELLAILGPSGRGKTT-------LPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA 65
           GE +  +GPSG GK+T       L T   G L  GE R     N+ P     +R  G V 
Sbjct: 29  GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR----MNDTP---PAERGVGMVF 81
Query: 66  HSNVFYLHLTVTETLVF------------------IA--------LFRLPI-------KR 92
            S   Y HL+V E + F                  +A        L R P        +R
Sbjct: 82  QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR 141
Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           V+  + L+  PS+  LDEP S LD+ +  Q+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 70/177 (39%), Gaps = 48/177 (27%)
Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-------NIDY-NNNPL 53
           ILKGI      GE ++I+G SG GK+TL   LG  L    T G        +DY N   L
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 54  SRTVKRKTGFVAHSNVFYLHLTVTETLVF--------------------------IALFR 87
           S    RK GFV   +     LT  E ++                             L R
Sbjct: 77  SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 88  LPI-------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
            P        +RV+ A+ L   P LLF DEP   LDS   K+++     +N  G S+
Sbjct: 137 KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 47/151 (31%)
Query: 13  GELLAILGPSGRGKTT-------LPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA 65
           GE +  +GPSG GK+T       L T   G L  GE R     N+ P     +R  G V 
Sbjct: 29  GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR----MNDTP---PAERGVGMVF 81
Query: 66  HSNVFYLHLTVTETLVF------------------IA--------LFRLPI-------KR 92
            S   Y HL+V E + F                  +A        L R P        +R
Sbjct: 82  QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR 141
Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQI 123
           V+  + L+  PS+  LD+P S LD+ +  Q+
Sbjct: 142 VAIGRTLVAEPSVFLLDQPLSNLDAALRVQM 172

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 48/212 (22%)
Query: 4   KGIRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVK 58
           + +RGVS     GE++ +LGPSG GKTT+   + G      T+G++      ++     K
Sbjct: 29  RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQK 86
Query: 59  RKTGFVAHSNVFYLHLT----------------------VTETLVFIALF----RLP--- 89
           R  G V  +   + H+T                      V E L F+ L     R P   
Sbjct: 87  RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146
Query: 90  ----IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFV 145
                +RV+ A+ L   P +L  DEP + +D+ I ++  L +    +H     GV S FV
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE--LRTFVRQVH--DEMGVTSVFV 202
Query: 146 GIGFEPSAAMNPSDFLLDLANGVVS--GDPKD 175
               +   A+  +D +L L  G V   G P++
Sbjct: 203 --THDQEEALEVADRVLVLHEGNVEQFGTPEE 232

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 51/183 (27%)
Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRK 60
           IL+G+      GE+ AI+GP+G GK+TL  TL GR     T G +++     L+ + + +
Sbjct: 16  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 61  TG---FVAH---------SNVFYLHLTVT--------ETL----------VFIALFRLPI 90
            G   F+A          SN F+L   +         ETL            IAL ++P 
Sbjct: 76  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 91  KRVSRA----------------QELLINPSLLFLDEPASGLDSTIAKQILLNSEG-NSLH 133
             ++R+                Q  ++ P L  LDE  SGLD    K +   ++G NSL 
Sbjct: 136 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV---ADGVNSLR 192
Query: 134 VGK 136
            GK
Sbjct: 193 DGK 195

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 51/183 (27%)
Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRK 60
           IL+G+      GE+ AI+GP+G GK+TL  TL GR     T G +++     L+ + + +
Sbjct: 35  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 61  TG---FVAH---------SNVFYLHLTVT--------ETL----------VFIALFRLPI 90
            G   F+A          SN F+L   +         ETL            IAL ++P 
Sbjct: 95  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 154
Query: 91  KRVSRA----------------QELLINPSLLFLDEPASGLDSTIAKQILLNSEG-NSLH 133
             ++R+                Q  ++ P L  LDE  SGLD    K +   ++G NSL 
Sbjct: 155 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV---ADGVNSLR 211
Query: 134 VGK 136
            GK
Sbjct: 212 DGK 214

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNNNPLSRTVKRKTGFVAHSNV 69
           GE L +LGPSG GKTT    + G     E R   G+ D    P      R    V  S  
Sbjct: 37  GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK---DRNISMVFQSYA 93
Query: 70  FYLHLTVTETLVF---IALF-----------------------RLPI-------KRVSRA 96
            + H+TV E + F   I  F                       R P        +RV+ A
Sbjct: 94  VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 153
Query: 97  QELLINPSLLFLDEPASGLDSTI 119
           + +++ P +L +DEP S LD+ +
Sbjct: 154 RAIVVEPDVLLMDEPLSNLDAKL 176

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNNNPLSRTVKRKTGFVAHSNV 69
           GE L +LGPSG GKTT    + G     E R   G+ D    P      R    V  S  
Sbjct: 38  GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK---DRNISMVFQSYA 94
Query: 70  FYLHLTVTETLVF---IALF-----------------------RLPI-------KRVSRA 96
            + H+TV E + F   I  F                       R P        +RV+ A
Sbjct: 95  VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 154
Query: 97  QELLINPSLLFLDEPASGLDSTI 119
           + +++ P +L +DEP S LD+ +
Sbjct: 155 RAIVVEPDVLLMDEPLSNLDAKL 177

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGN---IDYNNNPLSRTVKRKTGFVAHS 67
           GE   ILGPSG GKTT    + G    STGE   +   +  N   +     RK G V  +
Sbjct: 31  GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90
Query: 68  NVFYLHLTVTETLVF----IALFRLPIK-----------------------------RVS 94
              Y +LT  E + F    + + +  I+                             RV+
Sbjct: 91  WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150
Query: 95  RAQELLINPSLLFLDEPASGLDS 117
            A+ L+ +PSLL LDEP S LD+
Sbjct: 151 LARALVKDPSLLLLDEPFSNLDA 173

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGN---IDYNNNPLSRTVKRKTGFVAHS 67
           GE   ILGPSG GKTT    + G    STGE   +   +  N   +     RK G V  +
Sbjct: 31  GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90
Query: 68  NVFYLHLTVTETLVF----IALFRLPIK-----------------------------RVS 94
              Y +LT  E + F    + + +  I+                             RV+
Sbjct: 91  WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVA 150
Query: 95  RAQELLINPSLLFLDEPASGLDS 117
            A+ L+ +PSLL LDEP S LD+
Sbjct: 151 LARALVKDPSLLLLDEPFSNLDA 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
1sgw_A	214	Putative ABC transporter; structural genomics, P p	6e-17
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	9e-15
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-11
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	3e-11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-09
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	5e-05
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-09
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	5e-08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	7e-05
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	7e-08
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	9e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-07
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-07
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-05
1ji0_A	240	ABC transporter; ATP binding protein, structural g	3e-07
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-06
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-06
1b0u_A	262	Histidine permease; ABC transporter, transport pro	5e-05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	5e-05
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-04
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-04
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	2e-04
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	6e-04

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 77.9 bits (193), Expect = 6e-17
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 33/134 (24%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           G ++   GP+G GKTTL  T+   L     +G I YN  P+++ VK K  F+    +   
Sbjct: 35  GNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-VKGKIFFLPEEIIVPR 91

Query: 73  HLTVTETLVFIA-LFRLPIK-----------------------------RVSRAQELLIN 102
            ++V + L  +A L+ + +                              RV  A  LL+N
Sbjct: 92  KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151

Query: 103 PSLLFLDEPASGLD 116
             +  LD+P   +D
Sbjct: 152 AEIYVLDDPVVAID 165

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 72.6 bits (179), Expect = 9e-15
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 43/158 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRL--STGETR-GNIDYNNNPLSRTVKRKTGFVAHSNV 69
           GE+  ++GP+G GKTT    +   +  S+G       +    P    V++   ++     
Sbjct: 41  GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE--VRKLISYLPEEAG 98

Query: 70  FYLHLTVTETLVFIA-LFRLPIK--------------------------------RVSRA 96
            Y ++   E L F+A  +                                     ++  A
Sbjct: 99  AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 158

Query: 97  QELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
           + L++NP L  LDEP SGLD   A+++       + EG
Sbjct: 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 64/189 (33%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRL--ST------GETRGNIDYN 49
           ILK I    S     G+   + G +G GKTTL   L      ++      G+  G + Y+
Sbjct: 36  ILKKI----SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS 91

Query: 50  NNPLSRTVKRKTGFV--AHSNVFYLHLTVTETLV-----FIALFRLPIKR-VSRAQELL- 100
               + TV++  GFV  +    F     V + ++      I +++       + A +LL 
Sbjct: 92  ----AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLK 147

Query: 101 ------------------------I------NPSLLFLDEPASGLDSTIAKQIL-----L 125
                                   I       P +L LDEPA+GLD    + +L     L
Sbjct: 148 LVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSL 207

Query: 126 NSEGNSLHV 134
           +    +L +
Sbjct: 208 SDSYPTLAM 216

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 35/143 (24%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVA-HSNVFY 71
           GE + ILGP+G GKTTL   + G L      GNI  N   + + ++    +       + 
Sbjct: 30  GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVRK-IRNYIRYSTNLPEAYE 85

Query: 72  LHLTVTETLVFIA-LFRLPIKRVSRAQELL-----------------------------I 101
           + +TV + +     L  L         + L                              
Sbjct: 86  IGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS 145

Query: 102 NPSLLFLDEPASGLDSTIAKQIL 124
            P ++ LDEP   +D+     I 
Sbjct: 146 QPEIVGLDEPFENVDAARRHVIS 168

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 24/134 (17%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------TVKRKT 61
           GE++ ILGP+G GKTT    L G ++     G++      LS            TV++  
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQILSYKPQRIFPNYDGTVQQYL 351

Query: 62  GFVAHSNVFYLHLTVTETLVFIALFRL----PIK-------RVSRAQELLINPSLLFLDE 110
              +   +        E    + L RL              ++  A  L     L  LD+
Sbjct: 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ 411

Query: 111 PASGLDSTIAKQIL 124
           P+S LD      + 
Sbjct: 412 PSSYLDVEERYIVA 425

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 42/154 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRL--STGETRGNIDYNNN---------------PLSR 55
             +L +LG +G GKTT+   L G +  + G+    +  +                   S 
Sbjct: 25  NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSN 84

Query: 56  TVK--------RKTGFVAHSNVFYLHLTVTETLVFIALFRLPI----------------- 90
            +K                  V  +   + E      +  L                   
Sbjct: 85  ELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGL 144

Query: 91  KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           +R+  A  LL    +   D+P+S LD      + 
Sbjct: 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 51/177 (28%), Positives = 66/177 (37%), Gaps = 52/177 (29%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNID---YNNN 51
           ILKGI    SL    GE ++I+G SG GK+TL   LG     + G+      +    N  
Sbjct: 19  ILKGI----SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74

Query: 52  PLSRTVKRKTGFV-----------AHSNV----FYLHLTVTE--TLVFIALFRLPIK--- 91
            LS    RK GFV           A  NV      +     E        L  L +    
Sbjct: 75  ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL 134

Query: 92  -------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGN 130
                        RV+ A+ L   P LLF DEP   LDS   K+++     +N  G 
Sbjct: 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT 191

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 37/138 (26%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVF 70
            +   +LGP+G GK+     + G +     RG +  N   ++     +R  GFV      
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYAL 81

Query: 71  YLHLTVTETLVFIALFRLPI----KRVSRAQELL-------------------------- 100
           + HL+V   + +  L  +      +RV    E L                          
Sbjct: 82  FPHLSVYRNIAY-GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140

Query: 101 --INPSLLFLDEPASGLD 116
             I P LL LDEP S +D
Sbjct: 141 LVIQPRLLLLDEPLSAVD 158

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 55/148 (37%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVF 70
           GE++ +LGPSG GKTT+   + G      T+G++      ++     KR  G      VF
Sbjct: 41  GEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRNVGL-----VF 93

Query: 71  --Y-L--HLTVTETLVFIALFRLPIKRVSRAQ------ELL------------------- 100
             Y L  H+TV +    ++ F L  KRV + +      ELL                   
Sbjct: 94  QNYALFQHMTVYDN---VS-FGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGG 149

Query: 101 ------------INPSLLFLDEPASGLD 116
                         P +L  DEP + +D
Sbjct: 150 QQQRVALARALAPRPQVLLFDEPFAAID 177

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 22/143 (15%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
            L+   G    GE++ I+GP+G GKTT    L G      T G I+++     +    K 
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEWDLTVAYKPQYIKA 358

Query: 62  GF--VAHSNVFYLHLTVTETLVFIA--LFRLPIK----------------RVSRAQELLI 101
            +    +  +  +  +   +  +    L  L I                 RV+ A  LL 
Sbjct: 359 DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418

Query: 102 NPSLLFLDEPASGLDSTIAKQIL 124
           +  +  LDEP++ LD      + 
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVS 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 56/411 (13%), Positives = 112/411 (27%), Gaps = 135/411 (32%)

Query: 1   MILKGIRGVSSL--GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK 58
             LK  + +  L   + + I G  G GKT +           +           LS  V+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV---------ALDV---------CLSYKVQ 177

Query: 59  RKTGFVAHSNVFYLHL--TVTETLVFIALFRL-----------------PIKRVSRAQE- 98
            K  F     +F+L+L    +   V   L +L                    R+   Q  
Sbjct: 178 CKMDF----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 99  ---LLINP----SLLFLDE------------------------PASGLDSTIAKQILLNS 127
              LL +      LL L                              L +     I L+ 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 128 EGNSLHVGKGDGVMSYFVGIGFE--PSAAMNPSDFLLDLANGVVSGDP-------KDDQK 178
              +L   +   ++  ++    +  P   +  +   L +    +             +  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 179 ALKETLISAYKSNLSEKLKASFQEVGDHSLIGPGNKKNSNWSTT-----WWQQSSE---- 229
            L   + S+       + +  F  +     + P    +++  T      W+         
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLS----VFP---PSAHIPTILLSLIWFDVIKSDVMV 406

Query: 230 ---------LLKRNFRQSSSFCGS-------KLLSQLTSHRIHIINS---HICYCFN--- 267
                    L+++  ++S+    S       KL ++   HR  I++       +  +   
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS-IVDHYNIPKTFDSDDLI 465

Query: 268 -FRLSSYFV------AKTIGDLPMELTLPTVFVVVTY-WMAR--IKSTTPW 308
              L  YF        K I           VF  + + ++ +     +T W
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAW 514

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 46/181 (25%), Positives = 71/181 (39%), Gaps = 60/181 (33%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNID---YNNN 51
            LK +    +L    GE ++I+GPSG GK+T+   +G   + + GE    NI     +++
Sbjct: 20  ALKNV----NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75

Query: 52  PLSRTVKRKTGFVAHSNVFYL--HLTVTET----LVFIALFRLPIK-RVSRAQELLI--- 101
            L++  + K GFV     F L   LT  E     L+F     +  + R  RA E L    
Sbjct: 76  ELTKIRRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133

Query: 102 -----------------------------NPSLLFLDEPASGLDSTIAKQIL-----LNS 127
                                        NP ++  D+P   LDS   ++I+     LN 
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193

Query: 128 E 128
           E
Sbjct: 194 E 194

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 22/143 (15%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN-----PLSRT 56
            L+   G    GE++ I+GP+G GKTT    L G      T G ++++          + 
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEWDLTVAYKPQYIKA 428

Query: 57  VKRKTG--FVAHSNVFYLHLTVTETLVFIALFRLPIK-------------RVSRAQELLI 101
               T    ++  +   L+    +T +   L  + +              RV+ A  LL 
Sbjct: 429 EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR 488

Query: 102 NPSLLFLDEPASGLDSTIAKQIL 124
           +  +  LDEP++ LD      + 
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVS 511

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 45/165 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLS----TGETRGNIDYNNNPLS------RTVKRKTG 62
           G ++ I+GP+G GKTT    L G+L           +        +        +K    
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176

Query: 63  FVAH------SNVFYLHLTVTETL--------VFIALFRLPI----------------KR 92
                          +   V E L            +  L +                +R
Sbjct: 177 RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQR 236

Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
           V+ A  LL      F DEP+S LD     ++      L +EG ++
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 44/141 (31%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVF 70
           GE   ILGP+G GKT     + G        G I  +   ++     K    F     V+
Sbjct: 26  GEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAF-----VY 78

Query: 71  --Y-L--HLTVTETLVF-IALFRLPI-KRVSRAQELL----------------------- 100
             Y L  H+ V + L F + + ++   KRV      L                       
Sbjct: 79  QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVAL 138

Query: 101 -----INPSLLFLDEPASGLD 116
                 NP +L LDEP S LD
Sbjct: 139 ARALVTNPKILLLDEPLSALD 159

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 50/166 (30%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTV 57
            L  + G    GE+L ++GP+G GK+TL   + G  S    +G+I +   PL       +
Sbjct: 15  RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKL 71

Query: 58  KRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQELL----------------- 100
                +++          V      + L +    R     ++                  
Sbjct: 72  ALHRAYLSQQQTPPFATPVWHY---LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128

Query: 101 ---------------------INPSLLFLDEPASGLDSTIAKQILL 125
                                    LL LDEP + LD  +A+Q  L
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD--VAQQSAL 172

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 39/153 (25%), Positives = 52/153 (33%), Gaps = 61/153 (39%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTG-E--TRGNIDYNNNPLSRTV------KRKTGF 63
           GE+L I+G SG GKT   T L  R   G E    G I  +   +          +R+ G+
Sbjct: 30  GEILFIIGASGCGKT---TLL--RCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84

Query: 64  VAHSNVFY-L--HLTVTETLVFIALFRLPIKRVSRAQ------ELL-------------- 100
           +        L  HLTV      IA + L   +   AQ       +L              
Sbjct: 85  LVQE---GVLFPHLTVYRN---IA-YGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH 137

Query: 101 -----------------INPSLLFLDEPASGLD 116
                             +P L+ LDEP S LD
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALD 170

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT 61
           +L    G  S  E+L ++G +G GKTTL   L G L      G        L+ ++K + 
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQDIPK---LNVSMKPQK 421

Query: 62  GFVAHSNVFY--LHLTVTETLVF-------IALFRL-PIK-------------RVSRAQE 98
                           +    +        +   R+  I              RV+    
Sbjct: 422 IAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLA 481

Query: 99  LLINPSLLFLDEPASGLDSTIAKQIL 124
           L I   +  +DEP++ LDS       
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRIICS 507

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 25/172 (14%), Positives = 45/172 (26%), Gaps = 52/172 (30%)

Query: 13  GELLAILGPSGRGKTT--------LPTTLGGRLSTGETRGNIDYNNN----PLSRTVKRK 60
           G++L ++G +G GK+T            LG      E +  I Y            +   
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162

Query: 61  TGFVAHSN--VFYLHLTVTETLVFIA-LFRLP----IKRVSRAQELL------------- 100
                     V  +   +   +  +  L +L      + V R  ++L             
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKL 222

Query: 101 ---------------INPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSL 132
                              +   DEP+S LD             L +    +
Sbjct: 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 58/175 (33%)

Query: 6   IRGVS---SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-----V 57
           I+G+      G+++ ++G +G GKTT  + + G +     +G I +N   ++        
Sbjct: 22  IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVIN 79

Query: 58  KRKTGFVAHS----NVFYLHLTVTETL-------------------VFIALF-RLPIKRV 93
           +   G +A       +F   LTV E L                   +F +LF RL  +  
Sbjct: 80  RM--G-IALVPEGRRIF-PELTVYENLMMGAYNRKDKEGIKRDLEWIF-SLFPRLKERLK 134

Query: 94  SRA--------QELLI------NPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
                      Q L I       P LL +DEP+ GL   +  ++      +N EG
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 50/150 (33%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           G++LA+LG +G GK+TL   L G       +G I+         V +  GFV        
Sbjct: 31  GDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE---------VYQSIGFVPQFFSSPF 79

Query: 73  HLTVTETLVF-----IALFRLP----IKRVSRA----------------------QELLI 101
             +V + ++      I  F  P     +   +A                      Q +LI
Sbjct: 80  AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILI 139

Query: 102 ------NPSLLFLDEPASGLDSTIAKQILL 125
                    L+ LDEP S LD  +A Q ++
Sbjct: 140 ARAIASECKLILLDEPTSALD--LANQDIV 167

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 44/156 (28%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------R 55
           +LKGI      GE++ ++GPSG GK+T    L   L      G I  +   L        
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL-NLLED-FDEGEIIIDGINLKAKDTNLN 96

Query: 56  TVKRKTGFV-AHSNVFYLHLTVTE--TLVFIALFRLPIK--------------------- 91
            V+ + G V    N+F  H+TV    TL  + + + P +                     
Sbjct: 97  KVREEVGMVFQRFNLF-PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155

Query: 92  -----------RVSRAQELLINPSLLFLDEPASGLD 116
                      RV+ A+ L + P ++  DEP S LD
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 52/166 (31%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTL---------PT----TLGGRLSTGETRGNIDY 48
           +LKG+   +  G++++I+G SG GK+T          P+     + G+        +   
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80

Query: 49  NNNPLS--RTVKRKTGFV-AHSNVFYLHLTVTE--TLVFIALFRLPIKRV-SRAQELL-- 100
                +  R ++ +   V  H N++  H+TV E      I +  L       RA + L  
Sbjct: 81  KVADKNQLRLLRTRLTMVFQHFNLW-SHMTVLENVMEAPIQVLGLSKHDARERALKYLAK 139

Query: 101 ------------------------------INPSLLFLDEPASGLD 116
                                         + P +L  DEP S LD
Sbjct: 140 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 45/149 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGNIDYN--NNPLSRTV---KRKTGFVA 65
           GE   ILGPSG GKTT    + G    STGE     D     +     V    RK G V 
Sbjct: 31  GERFGILGPSGAGKTTFMRIIAGLDVPSTGELY--FDDRLVASNGKLIVPPEDRKIGMVF 88

Query: 66  HSNVFYLHLTVTETLVF-IALFRLP----IKRVSRAQELL-------------------- 100
            +   Y +LT  E + F +   ++      KRV    ++L                    
Sbjct: 89  QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQR 148

Query: 101 --------INPSLLFLDEPASGLDSTIAK 121
                    +PSLL LDEP S LD   A+
Sbjct: 149 VALARALVKDPSLLLLDEPFSNLD---AR 174

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 53/163 (32%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVF- 70
           GE L + G +G GK+TL   + G +    T G++ Y+        ++R  G       F 
Sbjct: 33  GECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNIGI-----AFQ 85

Query: 71  -----YLHLTVTETLVF------------------IALFRLPI----------------K 91
                +    V + + F                  +    L                  +
Sbjct: 86  YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145

Query: 92  RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEG 129
           RV+ A  ++  P +L LDEP  GLD      +L       + G
Sbjct: 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 65/171 (38%)

Query: 5   GIRGVSSL------GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVK 58
             + +  +      G++  I+GP+G GK+TL   + G L      G + + N  ++    
Sbjct: 19  EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITN--- 73

Query: 59  RKTGFVAHSNV---F-----YLHLTV-----------TETLVFIALFRLPIKR----VSR 95
           ++   + H  +   F        +TV            E+ +    ++  I +    V +
Sbjct: 74  KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK 133

Query: 96  AQELL-------------------------------INPSLLFLDEPASGL 115
           A ++L                                NP ++ +DEP +G+
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 43/158 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--RTVKR 59
           ILKG+  V   GE+ A++GP+G GK+TL   L G       RG I  +   +      +R
Sbjct: 18  ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77

Query: 60  -KTG-FVAH---------SNVFYLHLTVT-------ETLVFIALFRLPIKRV-------S 94
            + G F+A          +   +L L +            F    +  ++ +       S
Sbjct: 78  ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137

Query: 95  RA----------------QELLINPSLLFLDEPASGLD 116
           R                 Q L++ P+   LDE  SGLD
Sbjct: 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 2  ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL 53
          IL+G+      GE+ AI+GP+G GK+TL  TL GR     T G +++    L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.97
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.97
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.97
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.97
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.97
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.97
1g6h_A	257	High-affinity branched-chain amino acid transport	99.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.96
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.96
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.96
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.96
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.96
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.96
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.96
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.95
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.95
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.95
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.88
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.87
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.87
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.85
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.84
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.83
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.83
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.82
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.76
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.74
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.73
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.73
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.73
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.72
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.71
2og2_A	359	Putative signal recognition particle receptor; nuc	99.71
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.71
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.7
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.7
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.66
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.62
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.61
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.6
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.58
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.56
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.55
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.53
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.51
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.51
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.49
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.47
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.47
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.47
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.46
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.45
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.44
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.43
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.42
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.41
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.39
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.39
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.37
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.36
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.34
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.34
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.33
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.33
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.33
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.31
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.31
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.28
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.25
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.23
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.23
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.23
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.22
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.21
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.19
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.17
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.14
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.13
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.12
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.09
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.05
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.01
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.0
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.0
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.98
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.96
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.93
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.9
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.89
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.85
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.82
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.82
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.81
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.78
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.76
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.76
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.75
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.74
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.68
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.62
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.58
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.58
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.56
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.55
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.52
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.51
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.5
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.48
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.47
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.46
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.46
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.44
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.35
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.31
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.28
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.27
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.26
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.26
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.22
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.21
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.21
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.2
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.19
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.17
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.15
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.13
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.11
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.1
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.1
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.08
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.06
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.02
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.98
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.97
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.95
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.94
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.94
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.89
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.85
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.85
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.78
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.78
3kta_B	173	Chromosome segregation protein SMC; structural mai	97.78
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.75
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.75
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.71
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.68
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.63
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.55
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.53
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.48
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.42
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.39
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.36
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.36
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.34
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.33
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.32
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.32
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.3
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.28
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.21
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.19
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.19
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.19
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.17
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.12
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.12
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.09
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.08
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.07
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.05
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.05
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.03
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.02
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.01
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.0
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.99
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.99
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.99
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.98
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.97
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.96
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.96
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.94
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.91
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.9
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.89
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.86
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.86
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.86
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.83
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.79
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.78
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.77
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.77
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.75
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.71
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.69
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.69
3ice_A	422	Transcription termination factor RHO; transcriptio	96.68
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.67
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.67
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.65
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.58
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.58
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.55
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.55
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.53
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.52
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.5
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.5
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.47
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.47
1via_A	175	Shikimate kinase; structural genomics, transferase	96.43
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.43
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.41
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.38
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.36
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.35
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.35
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.33
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.31
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.27
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.22
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.2
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.2
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.19
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.19
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.16
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.16
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.15
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.14
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.11
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.11
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.1
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.09
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.08
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.06
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.05
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.05
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.03
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.03
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.02
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.02
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.01
3bos_A	242	Putative DNA replication factor; P-loop containing	96.01
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.01
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.98
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.98
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.98
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.96
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.96
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.95
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.95
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.94
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.94
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.93
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.92
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.9
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.9
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.9
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.87
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.86
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.86
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.86
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.86
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.85
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.85
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.84
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.83
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.8
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.8
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.8
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.8
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.79
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.79
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.79
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.79
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.78
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.76
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.74
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.73
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.71
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.71
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.7
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.7
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.7
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.69
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.69
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.68
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.68
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.68
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.66
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.65
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.65
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.63
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.62
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.62
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.59
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.58
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.57
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.57
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.57
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.57
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.56
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.56
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.56
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.55
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.55
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.51
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.51
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.51
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.51
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.5
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.5
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.49
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.49
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.47
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.47
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.47
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.45
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.45
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.44
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.44
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.43
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.43
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.43
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.42
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.42
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.41
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.41
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.4
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.4
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.38
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.38
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.38
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.37
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.36
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.35
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.35
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.34
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.34
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.34
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.33
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.32
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.32
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.32
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.31
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.31
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.3
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.3
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.29
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.29
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.28
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.27
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.27
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.24
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.22
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.2
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.18
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.17
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.17
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.17
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.17
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.15
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.14
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.14
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.13
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.13
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.11
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.09
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.08
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.04
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.04
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.02
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.98
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.94
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.93
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.91
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.89
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.89
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.88
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.84
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.84
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.83
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.81
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.81
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.74
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.74
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.73
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.72
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.7
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.7
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.67
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.66
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.58
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.56
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.54
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.5
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.49
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.47
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.44
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.43
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.43
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.42
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.39
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.38
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.32
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.27
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.26
2qgz_A	308	Helicase loader, putative primosome component; str	94.16
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.16
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.12
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.08
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.01
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	93.98
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.95
1xp8_A	366	RECA protein, recombinase A; recombination, radior	93.89
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	93.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.93
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	93.84
1wxq_A	397	GTP-binding protein; structural genomics, riken st	93.82
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	93.77
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	93.74
3co5_A	143	Putative two-component system transcriptional RES	93.74
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.72
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.7
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	93.69
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	93.63
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	93.58
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	93.52
3pvs_A	447	Replication-associated recombination protein A; ma	93.5
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	93.5

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.97  E-value=9e-32  Score=269.92  Aligned_cols=137  Identities=31%  Similarity=0.469  Sum_probs=120.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|||+++++||+++|+||||||||||||+|+|+++  +.+|+|.++|++...  ..++.++||+|+..++|++||+||
T Consensus        18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~en   95 (381)
T 3rlf_A           18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAEN   95 (381)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHH
T ss_pred             EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHH
Confidence            7899999999999999999999999999999999987  478999999998753  345679999999999999999999


Q ss_pred             HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308           80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---  123 (413)
Q Consensus        80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---  123 (413)
                      +.|....+ .+                                +|||+|||+|+.+|++|+|||||||||+..+.++   
T Consensus        96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~  175 (381)
T 3rlf_A           96 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE  175 (381)
T ss_dssp             HTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence            99875432 11                                1899999999999999999999999999999877   


Q ss_pred             -----------------------------HHhcCCcEEEecCcchH
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                                   ++|++|+++..|+++++
T Consensus       176 l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l  221 (381)
T 3rlf_A          176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  221 (381)
T ss_dssp             HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence                                         47788888888888775

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.97  E-value=4.3e-32  Score=270.48  Aligned_cols=120  Identities=33%  Similarity=0.510  Sum_probs=106.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc----C--hhccccEEEEecCCccCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL----S--RTVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~----~--~~~~~~~~~v~q~~~~~~~lT   75 (413)
                      +|+|||+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++.    .  +..++.+|||+|+..++|++|
T Consensus        19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt   96 (359)
T 3fvq_A           19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT   96 (359)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred             EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence            7899999999999999999999999999999999987  4789999999876    2  234567999999999999999


Q ss_pred             HHHHHHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           76 VTETLVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        76 v~e~l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      |+||+.|....+                   +.              +|||+|||+|+.+|++|+|||||||||+.++.+
T Consensus        97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~  176 (359)
T 3fvq_A           97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ  176 (359)
T ss_dssp             HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            999998854321                   10              189999999999999999999999999999987


Q ss_pred             H
Q 048308          123 I  123 (413)
Q Consensus       123 i  123 (413)
                      +
T Consensus       177 l  177 (359)
T 3fvq_A          177 I  177 (359)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.97  E-value=1.2e-31  Score=253.32  Aligned_cols=154  Identities=29%  Similarity=0.433  Sum_probs=123.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h----ccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T----VKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~----~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    .    .++.++||+|++.+++.
T Consensus        20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~   97 (235)
T 3tif_A           20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL   97 (235)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred             eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence            7999999999999999999999999999999999987  478999999987642    1    13469999999999999


Q ss_pred             CCHHHHHHHHHHcC----Cc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           74 LTVTETLVFIALFR----LP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        74 lTv~e~l~f~~~~~----~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      +||+||+.+....+    .+                                 +||++||++|+.+|++|+|||||+|||
T Consensus        98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD  177 (235)
T 3tif_A           98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD  177 (235)
T ss_dssp             SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            99999998864321    00                                 189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          117 STIAKQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       117 ~~~~~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +.++.+++     +..+ |.++..-+            |+... ...||.++.+.+|+..
T Consensus       178 ~~~~~~i~~~l~~l~~~~g~tvi~vt------------Hd~~~-~~~~d~i~~l~~G~i~  224 (235)
T 3tif_A          178 SKTGEKIMQLLKKLNEEDGKTVVVVT------------HDINV-ARFGERIIYLKDGEVE  224 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEC------------SCHHH-HTTSSEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEc------------CCHHH-HHhCCEEEEEECCEEE
Confidence            99999984     2233 77776633            33222 2347777777777654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.97  E-value=8.1e-32  Score=268.74  Aligned_cols=120  Identities=24%  Similarity=0.362  Sum_probs=107.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.++|+++..       ..++.+|||+|+..+++.+
T Consensus        43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~  120 (366)
T 3tui_C           43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR  120 (366)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred             EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence            7999999999999999999999999999999999987  478999999998642       2356799999999999999


Q ss_pred             CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+||+.+..... .+                                +|||+|||+|+.+|++|+|||||||||+.++.
T Consensus       121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~  200 (366)
T 3tui_C          121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR  200 (366)
T ss_dssp             CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence            9999999875421 11                                18999999999999999999999999999998


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      ++
T Consensus       201 ~i  202 (366)
T 3tui_C          201 SI  202 (366)
T ss_dssp             HH
T ss_pred             HH
Confidence            88

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.97  E-value=2.9e-31  Score=264.41  Aligned_cols=121  Identities=29%  Similarity=0.518  Sum_probs=107.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      ++|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++...  ..++.++||+|+..+++++||+|
T Consensus        29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e  106 (355)
T 1z47_A           29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYD  106 (355)
T ss_dssp             TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHH
Confidence            37999999999999999999999999999999999987  478999999988643  34678999999999999999999


Q ss_pred             HHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           79 TLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        79 ~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |+.|....+ .+                                +|||+|||+|+.+|++|+|||||+|||+.++.++
T Consensus       107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l  184 (355)
T 1z47_A          107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL  184 (355)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            999865321 11                                1899999999999999999999999999999877

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.97  E-value=2.3e-31  Score=255.38  Aligned_cols=133  Identities=30%  Similarity=0.506  Sum_probs=111.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------hhccccEEEEecCCccCCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------RTVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~v~q~~~~~~~lT   75 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+++  +.+|+|.++|++..      ...++.++||+|+..+++.+|
T Consensus        39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t  116 (263)
T 2olj_A           39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT  116 (263)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred             EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence            7899999999999999999999999999999999987  46899999998763      123557999999999999999


Q ss_pred             HHHHHHHHH-Hc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           76 VTETLVFIA-LF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        76 v~e~l~f~~-~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      |+||+.+.. .. +.+                                +||++||++|+.+|++++|||||+|||+.++.
T Consensus       117 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~  196 (263)
T 2olj_A          117 VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG  196 (263)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence            999998853 21 111                                18999999999999999999999999999999


Q ss_pred             HHH-----HhcCCcEEEecC
Q 048308          122 QIL-----LNSEGNSLHVGK  136 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~G~  136 (413)
                      .+.     +.++|.++..-+
T Consensus       197 ~~~~~l~~l~~~g~tvi~vt  216 (263)
T 2olj_A          197 EVLSVMKQLANEGMTMVVVT  216 (263)
T ss_dssp             HHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHhCCCEEEEEc
Confidence            883     223576665533

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.97  E-value=2.9e-31  Score=256.20  Aligned_cols=160  Identities=30%  Similarity=0.432  Sum_probs=130.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h----hccccEEEEecCC-ccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R----TVKRKTGFVAHSN-VFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~----~~~~~~~~v~q~~-~~~~~l   74 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|++..  +    ..++.++||+|+. ..+..+
T Consensus        23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~  100 (275)
T 3gfo_A           23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA  100 (275)
T ss_dssp             EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSS
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccC
Confidence            7999999999999999999999999999999999987  47899999998862  1    2456799999985 344579


Q ss_pred             CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+|++.|..... .+                                +||++||++|+.+|++|+|||||+|||+.++.
T Consensus       101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~  180 (275)
T 3gfo_A          101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS  180 (275)
T ss_dssp             BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence            9999999875421 11                                18999999999999999999999999999999


Q ss_pred             HHH-----Hh-cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          122 QIL-----LN-SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       122 ~i~-----ll-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      .++     +. .+|.++..            +.|+.......||.++.+.+|+....++.
T Consensus       181 ~i~~~l~~l~~~~g~tvi~------------vtHdl~~~~~~~drv~~l~~G~i~~~g~~  228 (275)
T 3gfo_A          181 EIMKLLVEMQKELGITIII------------ATHDIDIVPLYCDNVFVMKEGRVILQGNP  228 (275)
T ss_dssp             HHHHHHHHHHHHHCCEEEE------------EESCCSSGGGGCSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHhhCCCEEEE------------EecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            884     22 34777666            34677776778999999998887654443

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.97  E-value=4.1e-31  Score=253.54  Aligned_cols=155  Identities=28%  Similarity=0.441  Sum_probs=121.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-----------------hhccccEEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-----------------RTVKRKTGFV   64 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-----------------~~~~~~~~~v   64 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..                 ...++.++||
T Consensus        21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v   98 (262)
T 1b0u_A           21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV   98 (262)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEE
Confidence            7899999999999999999999999999999999987  47899999998764                 1234579999


Q ss_pred             ecCCccCCCCCHHHHHHHHH-Hc-CCc---------------------------------hhHHHHHHHHhhCCCEEEEe
Q 048308           65 AHSNVFYLHLTVTETLVFIA-LF-RLP---------------------------------IKRVSRAQELLINPSLLFLD  109 (413)
Q Consensus        65 ~q~~~~~~~lTv~e~l~f~~-~~-~~~---------------------------------~krvsia~~l~~~p~llllD  109 (413)
                      +|+..+++.+||+||+.+.. .. +.+                                 +||++||++|+.+|++++||
T Consensus        99 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD  178 (262)
T 1b0u_A           99 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD  178 (262)
T ss_dssp             CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             ecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999998843 11 110                                 17999999999999999999


Q ss_pred             CCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          110 EPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       110 EPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      |||+|||+.++..+.     +..+|.++..-+.            +.......||.++.+.+|+..
T Consensus       179 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtH------------d~~~~~~~~d~v~~l~~G~i~  232 (262)
T 1b0u_A          179 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH------------EMGFARHVSSHVIFLHQGKIE  232 (262)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHTTCCEEEECS------------CHHHHHHHCSEEEEEETTEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC------------CHHHHHHhCCEEEEEECCEEE
Confidence            999999999999884     2235766555332            222222345666666666543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=4.5e-31  Score=252.42  Aligned_cols=155  Identities=27%  Similarity=0.415  Sum_probs=124.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...   ..++.++||+|+..+++.+||+|
T Consensus        30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e  107 (256)
T 1vpl_A           30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE  107 (256)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHH
T ss_pred             EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHH
Confidence            7899999999999999999999999999999999987  478999999987642   34567999999999999999999


Q ss_pred             HHHHHHHc-CCc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           79 TLVFIALF-RLP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        79 ~l~f~~~~-~~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      |+.+.... +.+                                +||++||++|+.+|++++|||||+|||+.++..+. 
T Consensus       108 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~  187 (256)
T 1vpl_A          108 YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK  187 (256)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHH
Confidence            99885421 111                                18999999999999999999999999999999883 


Q ss_pred             ----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          125 ----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       125 ----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                          +..+|.++..-+            |+.......||.++.+.+|+..
T Consensus       188 ~l~~l~~~g~tiiivt------------Hd~~~~~~~~d~v~~l~~G~i~  225 (256)
T 1vpl_A          188 ILKQASQEGLTILVSS------------HNMLEVEFLCDRIALIHNGTIV  225 (256)
T ss_dssp             HHHHHHHTTCEEEEEE------------CCHHHHTTTCSEEEEEETTEEE
T ss_pred             HHHHHHhCCCEEEEEc------------CCHHHHHHHCCEEEEEECCEEE
Confidence                223577665533            2222234456777766666654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.97  E-value=4e-31  Score=263.88  Aligned_cols=138  Identities=32%  Similarity=0.495  Sum_probs=119.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++...  ..++.++||+|+..+++++||+||
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en   95 (359)
T 2yyz_A           18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFEN   95 (359)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHH
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHH
Confidence            6899999999999999999999999999999999987  478999999988743  345679999999999999999999


Q ss_pred             HHHHHHcC-------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308           80 LVFIALFR-------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---  123 (413)
Q Consensus        80 l~f~~~~~-------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---  123 (413)
                      +.|....+                   +.              +|||+|||+|+.+|++|+|||||+|||+.++.++   
T Consensus        96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  175 (359)
T 2yyz_A           96 IAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE  175 (359)
T ss_dssp             HHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence            98854221                   10              1899999999999999999999999999999877   


Q ss_pred             -----------------------------HHhcCCcEEEecCcchHh
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGVM  141 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~~  141 (413)
                                                   ++|++|+++..|+++++.
T Consensus       176 l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~  222 (359)
T 2yyz_A          176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY  222 (359)
T ss_dssp             HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                                         467788888888877653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.97  E-value=2.5e-31  Score=255.56  Aligned_cols=157  Identities=26%  Similarity=0.337  Sum_probs=124.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.+++  .+|+|.++|++...    ..++.++|++|+..+++.+||+
T Consensus        26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  103 (266)
T 4g1u_C           26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVS  103 (266)
T ss_dssp             EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHH
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHH
Confidence            79999999999999999999999999999999999874  67999999998643    3455799999999888899999


Q ss_pred             HHHHHHHHc-----------------CCc--------------hhHHHHHHHHhh------CCCEEEEeCCCCCCCHHHH
Q 048308           78 ETLVFIALF-----------------RLP--------------IKRVSRAQELLI------NPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        78 e~l~f~~~~-----------------~~~--------------~krvsia~~l~~------~p~llllDEPtsgLD~~~~  120 (413)
                      ||+.+....                 ++.              +||++||++|+.      +|++|+|||||+|||+.++
T Consensus       104 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~  183 (266)
T 4g1u_C          104 EVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ  183 (266)
T ss_dssp             HHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHH
T ss_pred             HHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHH
Confidence            999875321                 110              189999999999      9999999999999999999


Q ss_pred             HHHH-----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          121 KQIL-----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       121 ~~i~-----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      .+++     +..+ |.++..-+            |+.......||.++.+.+|+....
T Consensus       184 ~~i~~~l~~l~~~~~~tvi~vt------------Hdl~~~~~~~d~v~vl~~G~i~~~  229 (266)
T 4g1u_C          184 QHTLRLLRQLTRQEPLAVCCVL------------HDLNLAALYADRIMLLAQGKLVAC  229 (266)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEEC------------SCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEEE------------cCHHHHHHhCCEEEEEECCEEEEE
Confidence            9883     2233 44554422            333333345777777777766543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.97  E-value=5.3e-31  Score=247.06  Aligned_cols=133  Identities=35%  Similarity=0.487  Sum_probs=112.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hc-cccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TV-KRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~-~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...       .. ++.++||+|+..+++.
T Consensus        19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~   96 (224)
T 2pcj_A           19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE   96 (224)
T ss_dssp             EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence            7899999999999999999999999999999999987  468999999987642       11 2569999999999999


Q ss_pred             CCHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+||+.+..... .+                                +||++||++|+.+|++++|||||+|||+.++
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  176 (224)
T 2pcj_A           97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT  176 (224)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred             CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence            99999998854221 10                                1899999999999999999999999999999


Q ss_pred             HHHH-----HhcCCcEEEecC
Q 048308          121 KQIL-----LNSEGNSLHVGK  136 (413)
Q Consensus       121 ~~i~-----ll~~G~~v~~G~  136 (413)
                      ..+.     +.++|.++..-+
T Consensus       177 ~~~~~~l~~l~~~g~tvi~vt  197 (224)
T 2pcj_A          177 KRVMDIFLKINEGGTSIVMVT  197 (224)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEEEc
Confidence            9884     224587776644

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.97  E-value=5.4e-31  Score=263.21  Aligned_cols=137  Identities=36%  Similarity=0.570  Sum_probs=120.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++...  ..++.++||+|+..+++++||+||
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en   95 (362)
T 2it1_A           18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKN   95 (362)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHH
T ss_pred             EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHH
Confidence            7899999999999999999999999999999999987  478999999988643  345679999999999999999999


Q ss_pred             HHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308           80 LVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---  123 (413)
Q Consensus        80 l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---  123 (413)
                      +.|....+ .+                                +|||+|||+|+.+|++|+|||||||||+.++.++   
T Consensus        96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  175 (362)
T 2it1_A           96 IAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE  175 (362)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence            99865321 11                                1899999999999999999999999999999877   


Q ss_pred             -----------------------------HHhcCCcEEEecCcchH
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                                   ++|++|+++..|+++++
T Consensus       176 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~  221 (362)
T 2it1_A          176 LKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV  221 (362)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence                                         46778888888887765

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.97  E-value=8e-31  Score=263.11  Aligned_cols=138  Identities=28%  Similarity=0.477  Sum_probs=120.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++...        ..++.++||+|+..++++
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~   95 (372)
T 1g29_1           18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH   95 (372)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred             EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCC
Confidence            7899999999999999999999999999999999987  478999999987532        235679999999999999


Q ss_pred             CCHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+||+.|....+ .+                                +|||+|||+|+.+|++|+|||||+|||+.++
T Consensus        96 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  175 (372)
T 1g29_1           96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR  175 (372)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence            99999999875321 11                                1899999999999999999999999999999


Q ss_pred             HHH--------------------------------HHhcCCcEEEecCcchHh
Q 048308          121 KQI--------------------------------LLNSEGNSLHVGKGDGVM  141 (413)
Q Consensus       121 ~~i--------------------------------~ll~~G~~v~~G~~~~~~  141 (413)
                      .++                                ++|++|+++..|+++++.
T Consensus       176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~  228 (372)
T 1g29_1          176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (372)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            877                                477889999999887763

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=5e-31  Score=249.76  Aligned_cols=155  Identities=25%  Similarity=0.451  Sum_probs=121.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    . .++.++||+|+..+++.+||
T Consensus        21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv   98 (240)
T 1ji0_A           21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV   98 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence            7899999999999999999999999999999999987  468999999987642    1 24469999999999999999


Q ss_pred             HHHHHHHHHc-------------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALF-------------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~-------------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.+....                   ++.              +||++||++|+.+|++++|||||+|||+.++..+
T Consensus        99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l  178 (240)
T 1ji0_A           99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV  178 (240)
T ss_dssp             HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred             HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence            9999874210                   010              1899999999999999999999999999999988


Q ss_pred             H-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          124 L-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       124 ~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .     +.++|+++..-+.            +.......||.++.+.+|+..
T Consensus       179 ~~~l~~~~~~g~tvi~vtH------------d~~~~~~~~d~v~~l~~G~i~  218 (240)
T 1ji0_A          179 FEVIQKINQEGTTILLVEQ------------NALGALKVAHYGYVLETGQIV  218 (240)
T ss_dssp             HHHHHHHHHTTCCEEEEES------------CHHHHHHHCSEEEEEETTEEE
T ss_pred             HHHHHHHHHCCCEEEEEec------------CHHHHHHhCCEEEEEECCEEE
Confidence            4     2235765555332            221122345666666666554

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.97  E-value=4.3e-31  Score=252.72  Aligned_cols=156  Identities=24%  Similarity=0.401  Sum_probs=129.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...     ..++.++||+|+..+++.+||
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   99 (257)
T 1g6h_A           22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV   99 (257)
T ss_dssp             EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred             eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence            7899999999999999999999999999999999987  468999999987642     234579999999999999999


Q ss_pred             HHHHHHHHHc---C-----------Cc--------------------------------hhHHHHHHHHhhCCCEEEEeC
Q 048308           77 TETLVFIALF---R-----------LP--------------------------------IKRVSRAQELLINPSLLFLDE  110 (413)
Q Consensus        77 ~e~l~f~~~~---~-----------~~--------------------------------~krvsia~~l~~~p~llllDE  110 (413)
                      +||+.+....   +           .+                                +||++||++|+.+|++++|||
T Consensus       100 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE  179 (257)
T 1g6h_A          100 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE  179 (257)
T ss_dssp             HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             HHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            9999875322   1           11                                189999999999999999999


Q ss_pred             CCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          111 PASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       111 PtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ||+|||+.++..++     +..+|.++..            ..|+.......||.++.+.+|....
T Consensus       180 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~------------vtHd~~~~~~~~d~v~~l~~G~i~~  233 (257)
T 1g6h_A          180 PIAGVAPGLAHDIFNHVLELKAKGITFLI------------IEHRLDIVLNYIDHLYVMFNGQIIA  233 (257)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEE------------ECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred             CccCCCHHHHHHHHHHHHHHHHCCCEEEE------------EecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999984     2235777666            3467666677889988888887643

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.97  E-value=4.4e-31  Score=263.36  Aligned_cols=120  Identities=33%  Similarity=0.486  Sum_probs=106.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++...       ..++.++||+|+..+++++
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l   97 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL   97 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence            7999999999999999999999999999999999987  478999999987532       3467899999999999999


Q ss_pred             CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+||+.|....+ .+                                +||++|||+|+.+|++|+|||||+|||+.++.
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~  177 (353)
T 1oxx_K           98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD  177 (353)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence            9999998854321 11                                18999999999999999999999999999998


Q ss_pred             HH
Q 048308          122 QI  123 (413)
Q Consensus       122 ~i  123 (413)
                      ++
T Consensus       178 ~l  179 (353)
T 1oxx_K          178 SA  179 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            77

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.97  E-value=6.3e-31  Score=261.55  Aligned_cols=120  Identities=29%  Similarity=0.468  Sum_probs=106.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++...  ..++.++||+|+..+++++||+||
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en   92 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN   92 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHH
Confidence            6899999999999999999999999999999999987  478999999988643  345679999999999999999999


Q ss_pred             HHHHHHc----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALF----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.|....                ++.              +||++|||+|+.+|++|+|||||+|||+.++.++
T Consensus        93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l  166 (348)
T 3d31_A           93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA  166 (348)
T ss_dssp             HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence            9986432                110              1899999999999999999999999999999887

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.97  E-value=8.2e-31  Score=262.82  Aligned_cols=137  Identities=28%  Similarity=0.482  Sum_probs=113.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||||+|+|+.+  +.+|+|.++|++...  ..++.++||+|+..+++++||+||
T Consensus        26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en  103 (372)
T 1v43_A           26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYEN  103 (372)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHH
T ss_pred             EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHH
Confidence            6899999999999999999999999999999999987  478999999988643  345679999999999999999999


Q ss_pred             HHHHHHc-------------------CC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308           80 LVFIALF-------------------RL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---  123 (413)
Q Consensus        80 l~f~~~~-------------------~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---  123 (413)
                      +.|....                   ++              .+|||+|||+|+.+|++|+|||||+|||+.++.++   
T Consensus       104 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  183 (372)
T 1v43_A          104 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE  183 (372)
T ss_dssp             HHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence            9885221                   11              12899999999999999999999999999999877   


Q ss_pred             -----------------------------HHhcCCcEEEecCcchH
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                                   ++|++|+++..|+++++
T Consensus       184 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  229 (372)
T 1v43_A          184 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV  229 (372)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence                                         46778888888887766

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=7.3e-31  Score=256.87  Aligned_cols=158  Identities=24%  Similarity=0.388  Sum_probs=124.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.++..    ..++.++||+|+..+|+ .||+
T Consensus        69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~  145 (306)
T 3nh6_A           69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIA  145 (306)
T ss_dssp             EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHH
T ss_pred             eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHH
Confidence            7999999999999999999999999999999999997  478999999998753    35678999999998885 6999


Q ss_pred             HHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+....                    ++|                  +||++|||+|+.+|++|+|||||+|||+.+
T Consensus       146 eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~  225 (306)
T 3nh6_A          146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN  225 (306)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred             HHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence            999874210                    011                  289999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      +..+.    -+.+|+++..-+            |+.....+ ||.++.+.+|++...++.
T Consensus       226 ~~~i~~~l~~l~~~~Tvi~it------------H~l~~~~~-aD~i~vl~~G~iv~~G~~  272 (306)
T 3nh6_A          226 ERAIQASLAKVCANRTTIVVA------------HRLSTVVN-ADQILVIKDGCIVERGRH  272 (306)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEC------------CSHHHHHT-CSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHcCCCEEEEEE------------cChHHHHc-CCEEEEEECCEEEEECCH
Confidence            99884    122456555422            23222234 788888888877654443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=1.5e-30  Score=246.56  Aligned_cols=120  Identities=26%  Similarity=0.458  Sum_probs=104.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|+++++ |+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...  ..++.++||+|+..+++.+||+||
T Consensus        14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en   90 (240)
T 2onk_A           14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN   90 (240)
T ss_dssp             EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred             EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence            48999999999 9999999999999999999999987  468999999987642  345679999999999999999999


Q ss_pred             HHHHHHc-----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           80 LVFIALF-----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        80 l~f~~~~-----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +.+....                 ++.              +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus        91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~  166 (240)
T 2onk_A           91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM  166 (240)
T ss_dssp             HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            9874211                 111              18999999999999999999999999999998883

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.96  E-value=2.6e-30  Score=240.80  Aligned_cols=148  Identities=27%  Similarity=0.405  Sum_probs=122.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+.. ..++.++||+|+..+++.+||+||+.
T Consensus        24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~  100 (214)
T 1sgw_A           24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLK  100 (214)
T ss_dssp             EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence            7899999999999999999999999999999999987  46899999998765 35677999999999999999999998


Q ss_pred             HHHHc-----------------CC---c----------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh
Q 048308           82 FIALF-----------------RL---P----------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN  126 (413)
Q Consensus        82 f~~~~-----------------~~---~----------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll  126 (413)
                      +....                 ++   .          +||++||++|+.+|++++|||||+|||+.++..+.     +.
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~  180 (214)
T 1sgw_A          101 AVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL  180 (214)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence            85321                 11   0          18999999999999999999999999999998884     22


Q ss_pred             cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh
Q 048308          127 SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL  164 (413)
Q Consensus       127 ~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~  164 (413)
                      .+|+++..            ..|+.......+|.++-.
T Consensus       181 ~~g~tiii------------vtHd~~~~~~~~d~v~~~  206 (214)
T 1sgw_A          181 KEKGIVII------------SSREELSYCDVNENLHKY  206 (214)
T ss_dssp             HHHSEEEE------------EESSCCTTSSEEEEGGGG
T ss_pred             hCCCEEEE------------EeCCHHHHHHhCCEEEEe
Confidence            24666655            235666666777777644

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.96  E-value=3.8e-30  Score=244.80  Aligned_cols=153  Identities=25%  Similarity=0.402  Sum_probs=122.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++||+|+..+++ .||+
T Consensus        24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~  100 (247)
T 2ff7_A           24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSII  100 (247)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHH
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHH
Confidence            7899999999999999999999999999999999987  468999999987642    24567999999998876 6999


Q ss_pred             HHHHHHH-------------Hc-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIA-------------LF-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~-------------~~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+..             ..       +.|                  +||++||++|+.+|++++|||||+|||+.+
T Consensus       101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~  180 (247)
T 2ff7_A          101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES  180 (247)
T ss_dssp             HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred             HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            9997631             00       111                  289999999999999999999999999999


Q ss_pred             HHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          120 AKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       120 ~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +..++  +  +.+|+++..-+            |+...... ||.++.+.+|...
T Consensus       181 ~~~i~~~l~~~~~g~tviivt------------H~~~~~~~-~d~v~~l~~G~i~  222 (247)
T 2ff7_A          181 EHVIMRNMHKICKGRTVIIIA------------HRLSTVKN-ADRIIVMEKGKIV  222 (247)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEC------------SSGGGGTT-SSEEEEEETTEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEEe------------CCHHHHHh-CCEEEEEECCEEE
Confidence            99884  1  13577666533            34333333 7888888777654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.96  E-value=3.5e-30  Score=245.26  Aligned_cols=155  Identities=24%  Similarity=0.359  Sum_probs=122.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|+++++||+++|+||||||||||+|+|+|.+++  . |+|.++|.+...    ..++.++|++|+..+++.+||
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   90 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV   90 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence            479999999999999999999999999999999999874  6 999999987632    345679999999999999999


Q ss_pred             HHHHHHHHH--------------cCCc--------------hhHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHH
Q 048308           77 TETLVFIAL--------------FRLP--------------IKRVSRAQELLINPS-------LLFLDEPASGLDSTIAK  121 (413)
Q Consensus        77 ~e~l~f~~~--------------~~~~--------------~krvsia~~l~~~p~-------llllDEPtsgLD~~~~~  121 (413)
                      +||+.+...              +++.              +||++||++|+.+|+       +++|||||+|||+.++.
T Consensus        91 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~  170 (249)
T 2qi9_C           91 WHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS  170 (249)
T ss_dssp             HHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred             HHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence            999987421              1111              189999999999999       99999999999999999


Q ss_pred             HHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          122 QIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       122 ~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      .+.     +..+|+++..-+.            +.......||.++.+.+|...
T Consensus       171 ~l~~~l~~l~~~g~tviivtH------------d~~~~~~~~d~v~~l~~G~i~  212 (249)
T 2qi9_C          171 ALDKILSALSQQGLAIVMSSH------------DLNHTLRHAHRAWLLKGGKML  212 (249)
T ss_dssp             HHHHHHHHHHHTTCEEEEECS------------CHHHHHHHCSEEEEEETTEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEeC------------CHHHHHHhCCEEEEEECCEEE
Confidence            884     2235776655332            222222446666667677654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.96  E-value=1.7e-29  Score=242.81  Aligned_cols=155  Identities=25%  Similarity=0.413  Sum_probs=124.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCC-ccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSN-VFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~-~~~~~lTv~e~   79 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+... ..++.++||+|+. ..++.+||+||
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en   99 (266)
T 2yz2_A           22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE   99 (266)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence            7999999999999999999999999999999999987  478999999987653 3456799999985 56678999999


Q ss_pred             HHHHH------------------HcCCc--h--------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           80 LVFIA------------------LFRLP--I--------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        80 l~f~~------------------~~~~~--~--------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                      +.+..                  .+++.  .              ||++||++|+.+|++++|||||+|||+.++..+. 
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~  179 (266)
T 2yz2_A          100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR  179 (266)
T ss_dssp             HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH
Confidence            98742                  12333  2              8999999999999999999999999999999883 


Q ss_pred             ----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          125 ----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       125 ----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                          +..+|.++..            ..|+.......||.++.+.+|...
T Consensus       180 ~l~~l~~~g~tii~------------vtHd~~~~~~~~d~v~~l~~G~i~  217 (266)
T 2yz2_A          180 IVEKWKTLGKTVIL------------ISHDIETVINHVDRVVVLEKGKKV  217 (266)
T ss_dssp             HHHHHHHTTCEEEE------------ECSCCTTTGGGCSEEEEEETTEEE
T ss_pred             HHHHHHHcCCEEEE------------EeCCHHHHHHhCCEEEEEECCEEE
Confidence                2235766655            235555555566777666666543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.96  E-value=7.2e-30  Score=246.05  Aligned_cols=154  Identities=23%  Similarity=0.363  Sum_probs=122.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++||+|+..+++ .||+
T Consensus        34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~  110 (271)
T 2ixe_A           34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFR  110 (271)
T ss_dssp             CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHH
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHH
Confidence            7999999999999999999999999999999999987  468999999987642    23557999999998887 5999


Q ss_pred             HHHHHHHH-----------------------c--CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIAL-----------------------F--RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~~-----------------------~--~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ||+.+...                       +  ++.              +||++|||+|+.+|++|+|||||+|||+.
T Consensus       111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~  190 (271)
T 2ixe_A          111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG  190 (271)
T ss_dssp             HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred             HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence            99977310                       0  010              18999999999999999999999999999


Q ss_pred             HHHHHH--H--h-c-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          119 IAKQIL--L--N-S-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       119 ~~~~i~--l--l-~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      ++..++  +  + . +|+++..-+            |+...... ||.++.+.+|.+..
T Consensus       191 ~~~~i~~~l~~~~~~~g~tviivt------------Hd~~~~~~-~d~v~~l~~G~i~~  236 (271)
T 2ixe_A          191 NQLRVQRLLYESPEWASRTVLLIT------------QQLSLAER-AHHILFLKEGSVCE  236 (271)
T ss_dssp             HHHHHHHHHHHCTTTTTSEEEEEC------------SCHHHHTT-CSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHhhcCCEEEEEe------------CCHHHHHh-CCEEEEEECCEEEE
Confidence            999884  2  2 2 277766533            33222233 78888888887654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.96  E-value=4.8e-30  Score=248.22  Aligned_cols=155  Identities=28%  Similarity=0.324  Sum_probs=122.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC--h----hccccEEEEecCCccC--CC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--R----TVKRKTGFVAHSNVFY--LH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~----~~~~~~~~v~q~~~~~--~~   73 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+..  .    ..++.++||+|+..++  +.
T Consensus        36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~  113 (279)
T 2ihy_A           36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEG  113 (279)
T ss_dssp             EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTT
T ss_pred             EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCC
Confidence            7899999999999999999999999999999999987  46899999998764  1    3456799999987543  35


Q ss_pred             CCHHHHHHHHHH-----------------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           74 LTVTETLVFIAL-----------------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        74 lTv~e~l~f~~~-----------------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      +||+||+.+...                       +++.              +||++||++|+.+|++|+|||||+|||
T Consensus       114 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD  193 (279)
T 2ihy_A          114 ERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD  193 (279)
T ss_dssp             SBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred             CCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence            699999976311                       0110              189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcCCcEE--EecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          117 STIAKQIL-----LNSEGNSL--HVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       117 ~~~~~~i~-----ll~~G~~v--~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +.++..+.     +..+|.++  ..            ..|+.......||.++.+.+|+..
T Consensus       194 ~~~~~~l~~~l~~l~~~g~tv~~ii------------vtHd~~~~~~~~d~v~~l~~G~i~  242 (279)
T 2ihy_A          194 FIARESLLSILDSLSDSYPTLAMIY------------VTHFIEEITANFSKILLLKDGQSI  242 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEE------------EESCGGGCCTTCCEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEE------------EecCHHHHHHhCCEEEEEECCEEE
Confidence            99999884     22336554  33            235555566778988888887654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.96  E-value=2.8e-29  Score=240.54  Aligned_cols=154  Identities=21%  Similarity=0.338  Sum_probs=123.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  + +|+|.++|.+...    ..++.++||+|+..+++ .||+
T Consensus        35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~  110 (260)
T 2ghi_A           35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIK  110 (260)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHH
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHH
Confidence            7999999999999999999999999999999999986  3 7999999987642    34567999999998886 6999


Q ss_pred             HHHHHHH-------------HcC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIA-------------LFR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~-------------~~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+..             ..+       ++                  +||++||++|+.+|++++|||||+|||+.+
T Consensus       111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~  190 (260)
T 2ghi_A          111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT  190 (260)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred             HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence            9997631             011       11                  189999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCC
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGD  172 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~  172 (413)
                      +..+.    -+.+|+++..-            .|+...... ||.++.+.+|.....
T Consensus       191 ~~~i~~~l~~l~~~~tviiv------------tH~~~~~~~-~d~i~~l~~G~i~~~  234 (260)
T 2ghi_A          191 EYLFQKAVEDLRKNRTLIII------------AHRLSTISS-AESIILLNKGKIVEK  234 (260)
T ss_dssp             HHHHHHHHHHHTTTSEEEEE------------CSSGGGSTT-CSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEE------------cCCHHHHHh-CCEEEEEECCEEEEE
Confidence            98883    12357766553            344433333 888888888876543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.96  E-value=3.4e-29  Score=235.55  Aligned_cols=124  Identities=26%  Similarity=0.361  Sum_probs=104.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|         .++|++|+..+++. ||+||+
T Consensus        22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g---------~i~~v~q~~~~~~~-tv~enl   89 (229)
T 2pze_A           22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQFSWIMPG-TIKENI   89 (229)
T ss_dssp             CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---------CEEEECSSCCCCSB-CHHHHH
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---------EEEEEecCCcccCC-CHHHHh
Confidence            37999999999999999999999999999999999987  4789999998         39999999988875 999999


Q ss_pred             HHHH------------HcC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIA------------LFR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~------------~~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .+..            ..+       ++                  +||++||++|+.+|++++|||||+|||+.++..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i  169 (229)
T 2pze_A           90 IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI  169 (229)
T ss_dssp             HTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHH
T ss_pred             hccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHH
Confidence            7631            011       11                  1899999999999999999999999999999998


Q ss_pred             HH--h---cCCcEEEecC
Q 048308          124 LL--N---SEGNSLHVGK  136 (413)
Q Consensus       124 ~l--l---~~G~~v~~G~  136 (413)
                      .-  +   .+|+++..-+
T Consensus       170 ~~~l~~~~~~~~tvi~vt  187 (229)
T 2pze_A          170 FESCVCKLMANKTRILVT  187 (229)
T ss_dssp             HHHCCCCCTTTSEEEEEC
T ss_pred             HHHHHHHhhCCCEEEEEc
Confidence            52  2   2466665533

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.96  E-value=1.2e-28  Score=237.02  Aligned_cols=157  Identities=26%  Similarity=0.308  Sum_probs=120.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hc-cccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TV-KRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~-~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.+...    .. ++.++||+|+..+++.+||
T Consensus        35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv  114 (267)
T 2zu0_C           35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN  114 (267)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBH
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccH
Confidence            789999999999999999999999999999999985212578999999987642    11 3359999999999999999


Q ss_pred             HHHHHHHHH--------------------------cCCc----------------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           77 TETLVFIAL--------------------------FRLP----------------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        77 ~e~l~f~~~--------------------------~~~~----------------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                      +|++.+...                          +++.                +||++||++|+.+|++++|||||+|
T Consensus       115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~  194 (267)
T 2zu0_C          115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG  194 (267)
T ss_dssp             HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred             HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence            999875320                          0110                1899999999999999999999999


Q ss_pred             CCHHHHHHHH--H---hcCCcEEEecCcchHhHHHHhcCCCCCCCCCh-hHHHHHhhCCccC
Q 048308          115 LDSTIAKQIL--L---NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNP-SDFLLDLANGVVS  170 (413)
Q Consensus       115 LD~~~~~~i~--l---l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~-ad~~~~~~~~~~~  170 (413)
                      ||+.++..+.  +   ..+|+++..-+            |+....... ||.++.+.+|+..
T Consensus       195 LD~~~~~~l~~~l~~l~~~g~tviivt------------Hd~~~~~~~~~d~v~~l~~G~i~  244 (267)
T 2zu0_C          195 LDIDALKVVADGVNSLRDGKRSFIIVT------------HYQRILDYIKPDYVHVLYQGRIV  244 (267)
T ss_dssp             CCHHHHHHHHHHHHTTCCSSCEEEEEC------------SSGGGGGTSCCSEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEe------------eCHHHHHhhcCCEEEEEECCEEE
Confidence            9999999984  1   13477666533            333333333 6666666666553

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.96  E-value=3.4e-30  Score=244.41  Aligned_cols=158  Identities=27%  Similarity=0.381  Sum_probs=122.7

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|.+...    ..++.++||+|+..+++ .||
T Consensus        16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv   92 (243)
T 1mv5_A           16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTI   92 (243)
T ss_dssp             CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEH
T ss_pred             ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccH
Confidence            37999999999999999999999999999999999987  468999999987642    34567999999998887 599


Q ss_pred             HHHHHHHHH--------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           77 TETLVFIAL--------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        77 ~e~l~f~~~--------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +||+.+...              ++       +|                  +||++||++|+.+|++++|||||+|||+
T Consensus        93 ~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~  172 (243)
T 1mv5_A           93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS  172 (243)
T ss_dssp             HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred             HHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence            999976410              01       11                  1899999999999999999999999999


Q ss_pred             HHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          118 TIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       118 ~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      .++..+.    -+.+|+++..-+.            +.... ..||.++.+.+|.....++
T Consensus       173 ~~~~~i~~~l~~~~~~~tvi~vtH------------~~~~~-~~~d~v~~l~~G~i~~~g~  220 (243)
T 1mv5_A          173 ESESMVQKALDSLMKGRTTLVIAH------------RLSTI-VDADKIYFIEKGQITGSGK  220 (243)
T ss_dssp             SSCCHHHHHHHHHHTTSEEEEECC------------SHHHH-HHCSEEEEEETTEECCCSC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeC------------ChHHH-HhCCEEEEEECCEEEEeCC
Confidence            9988773    1226777666442            22111 2367777777887655443

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.95  E-value=9.6e-29  Score=235.91  Aligned_cols=144  Identities=24%  Similarity=0.300  Sum_probs=114.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.         .++.++||+|+..+++.+||+||+.
T Consensus        20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~~~~i~~v~q~~~~~~~~tv~enl~   88 (253)
T 2nq2_C           20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------VYQSIGFVPQFFSSPFAYSVLDIVL   88 (253)
T ss_dssp             EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------ECSCEEEECSCCCCSSCCBHHHHHH
T ss_pred             EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------EeccEEEEcCCCccCCCCCHHHHHH
Confidence            7899999999999999999999999999999999987  4689998         2457999999999999999999998


Q ss_pred             HHHHc--C---------------------Cc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           82 FIALF--R---------------------LP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        82 f~~~~--~---------------------~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +....  +                     +.              +||++||++|+.+|++++|||||+|||+.++..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~  168 (253)
T 2nq2_C           89 MGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL  168 (253)
T ss_dssp             GGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHH
T ss_pred             HhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            75321  0                     00              18999999999999999999999999999999884


Q ss_pred             -----HhcC-CcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCc
Q 048308          125 -----LNSE-GNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGV  168 (413)
Q Consensus       125 -----ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~  168 (413)
                           +..+ |.++..-+.            +.......||.++.+.+|.
T Consensus       169 ~~l~~l~~~~g~tvi~vtH------------d~~~~~~~~d~v~~l~~G~  206 (253)
T 2nq2_C          169 SLLIDLAQSQNMTVVFTTH------------QPNQVVAIANKTLLLNKQN  206 (253)
T ss_dssp             HHHHHHHHTSCCEEEEEES------------CHHHHHHHCSEEEEEETTE
T ss_pred             HHHHHHHHhcCCEEEEEec------------CHHHHHHhCCEEEEEeCCe
Confidence                 2234 776655332            2222223456666666665

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.95  E-value=6.2e-29  Score=236.75  Aligned_cols=157  Identities=25%  Similarity=0.295  Sum_probs=124.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeeEEEEECCcccCh----h-ccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR--LSTGETRGNIDYNNNPLSR----T-VKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~--~~~~~~~G~i~~~g~~~~~----~-~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.  ++  +.+|+|.++|++...    . .++.++|++|++.+++.+
T Consensus        18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   95 (250)
T 2d2e_A           18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV   95 (250)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence            78999999999999999999999999999999998  44  578999999987642    1 234589999999999999


Q ss_pred             CHHHHHHHHHH--c--------------------CCc----------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           75 TVTETLVFIAL--F--------------------RLP----------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        75 Tv~e~l~f~~~--~--------------------~~~----------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      ||+|++.+...  .                    +++                +||++||++|+.+|++++|||||+|||
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD  175 (250)
T 2d2e_A           96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD  175 (250)
T ss_dssp             BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred             CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence            99999976421  0                    110                189999999999999999999999999


Q ss_pred             HHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCCh-hHHHHHhhCCccCCC
Q 048308          117 STIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNP-SDFLLDLANGVVSGD  172 (413)
Q Consensus       117 ~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~-ad~~~~~~~~~~~~~  172 (413)
                      +.++..+.     +..+|+++..-            .|+....... +|.++.+.+|.....
T Consensus       176 ~~~~~~l~~~l~~l~~~g~tvi~v------------tHd~~~~~~~~~d~v~~l~~G~i~~~  225 (250)
T 2d2e_A          176 IDALKVVARGVNAMRGPNFGALVI------------THYQRILNYIQPDKVHVMMDGRVVAT  225 (250)
T ss_dssp             HHHHHHHHHHHHHHCSTTCEEEEE------------CSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEE------------ecCHHHHHHhcCCEEEEEECCEEEEE
Confidence            99999884     22357776653            3554444455 588888888876543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.95  E-value=9.6e-29  Score=233.66  Aligned_cols=146  Identities=22%  Similarity=0.379  Sum_probs=118.1

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|         .++||+|+.. ++.+||+||+
T Consensus        19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~-~~~~tv~enl   86 (237)
T 2cbz_A           19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---------SVAYVPQQAW-IQNDSLRENI   86 (237)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS---------CEEEECSSCC-CCSEEHHHHH
T ss_pred             ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC---------EEEEEcCCCc-CCCcCHHHHh
Confidence            37999999999999999999999999999999999987  4789999998         3999999976 4688999999


Q ss_pred             HHHHH------------------cCC-c------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIAL------------------FRL-P------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~~------------------~~~-~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .+...                  ++. +                  +||++||++|+.+|++++|||||+|||+.++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i  166 (237)
T 2cbz_A           87 LFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI  166 (237)
T ss_dssp             HTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH
T ss_pred             hCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence            76310                  000 0                  1899999999999999999999999999999988


Q ss_pred             H-Hh------cCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCC
Q 048308          124 L-LN------SEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSG  171 (413)
Q Consensus       124 ~-ll------~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~  171 (413)
                      + ++      .+|+++..            ..|+.... ..||.++.+.+|....
T Consensus       167 ~~~l~~~~~~~~~~tvii------------vtH~~~~~-~~~d~v~~l~~G~i~~  208 (237)
T 2cbz_A          167 FENVIGPKGMLKNKTRIL------------VTHSMSYL-PQVDVIIVMSGGKISE  208 (237)
T ss_dssp             HHHTTSTTSTTTTSEEEE------------ECSCSTTG-GGSSEEEEEETTEEEE
T ss_pred             HHHHHHHHhhcCCCEEEE------------EecChHHH-HhCCEEEEEeCCEEEE
Confidence            5 23      24666655            23554443 3588888888887654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.95  E-value=1.5e-28  Score=260.37  Aligned_cols=158  Identities=28%  Similarity=0.392  Sum_probs=127.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|++.+++. ||+
T Consensus       356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~  432 (578)
T 4a82_A          356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVK  432 (578)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHH
T ss_pred             ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHH
Confidence            7999999999999999999999999999999999997  478999999988753    356689999999988876 999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++|||||||||+.+
T Consensus       433 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~  512 (578)
T 4a82_A          433 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES  512 (578)
T ss_dssp             HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence            99976310             0       111                  289999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      +..+.    -+.+|+++..            +.|+.....+ ||.++.+.+|+....++.
T Consensus       513 ~~~i~~~l~~~~~~~t~i~------------itH~l~~~~~-~d~i~~l~~G~i~~~g~~  559 (578)
T 4a82_A          513 ESIIQEALDVLSKDRTTLI------------VAHRLSTITH-ADKIVVIENGHIVETGTH  559 (578)
T ss_dssp             HHHHHHHHHHHTTTSEEEE------------ECSSGGGTTT-CSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHcCCCEEEE------------EecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence            98873    2345666655            2344444444 899999988887655443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.95  E-value=6.1e-29  Score=250.70  Aligned_cols=119  Identities=25%  Similarity=0.334  Sum_probs=102.6

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .+|+|||+++++||+++|+||||||||||||+|+|+++   .+|+|.++|+++..    ..++.++||+|+..+++ +||
T Consensus        35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv  110 (390)
T 3gd7_A           35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTF  110 (390)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEH
T ss_pred             EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCH
Confidence            37999999999999999999999999999999999974   67999999987642    34578999999999887 699


Q ss_pred             HHHHHHH------------HHcC----------------------Cc---hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           77 TETLVFI------------ALFR----------------------LP---IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        77 ~e~l~f~------------~~~~----------------------~~---~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      +||+.+.            ..++                      ++   +||++|||+|+.+|++|+|||||||||+.+
T Consensus       111 ~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~  190 (390)
T 3gd7_A          111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT  190 (390)
T ss_dssp             HHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHH
T ss_pred             HHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            9999631            1111                      11   289999999999999999999999999999


Q ss_pred             HHHH
Q 048308          120 AKQI  123 (413)
Q Consensus       120 ~~~i  123 (413)
                      +.++
T Consensus       191 ~~~l  194 (390)
T 3gd7_A          191 YQII  194 (390)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9887

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=2.2e-28  Score=259.53  Aligned_cols=159  Identities=26%  Similarity=0.381  Sum_probs=126.7

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .+|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|++.+++. ||
T Consensus       357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv  433 (587)
T 3qf4_A          357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TI  433 (587)
T ss_dssp             CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EH
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cH
Confidence            37999999999999999999999999999999999997  478999999998753    346789999999988865 99


Q ss_pred             HHHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||+.+...             .       ++|                  +||++|||+|+.+|++++||||||+||+.
T Consensus       434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~  513 (587)
T 3qf4_A          434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI  513 (587)
T ss_dssp             HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred             HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence            999976310             0       111                  28999999999999999999999999999


Q ss_pred             HHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          119 IAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       119 ~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      ++.++.    -+.+|+++..-+            |+.... ..||.++.+.+|++...++.
T Consensus       514 ~~~~i~~~l~~~~~~~tvi~it------------H~l~~~-~~~d~i~vl~~G~i~~~g~~  561 (587)
T 3qf4_A          514 TEKRILDGLKRYTKGCTTFIIT------------QKIPTA-LLADKILVLHEGKVAGFGTH  561 (587)
T ss_dssp             HHHHHHHHHHHHSTTCEEEEEE------------SCHHHH-TTSSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHhCCCCEEEEEe------------cChHHH-HhCCEEEEEECCEEEEECCH
Confidence            999884    234677665533            222222 24788888888887655443

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.95  E-value=5.4e-28  Score=256.29  Aligned_cols=158  Identities=20%  Similarity=0.314  Sum_probs=126.8

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.+||++..+    ..++.++||+|++.+++. ||
T Consensus       357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv  433 (582)
T 3b60_A          357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TV  433 (582)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BH
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CH
Confidence            37999999999999999999999999999999999987  478999999988643    346679999999998874 99


Q ss_pred             HHHHHHHHH--------------cC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           77 TETLVFIAL--------------FR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        77 ~e~l~f~~~--------------~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +||+.+...              .+       +|                  +||++|||+|+.+|++++|||||||||+
T Consensus       434 ~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~  513 (582)
T 3b60_A          434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT  513 (582)
T ss_dssp             HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCH
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence            999987430              00       11                  1899999999999999999999999999


Q ss_pred             HHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          118 TIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       118 ~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      .++.++.    -+.+|+++..-            .|+..... .||.++.+.+|+....++
T Consensus       514 ~~~~~i~~~l~~~~~~~tvi~i------------tH~~~~~~-~~d~i~~l~~G~i~~~g~  561 (582)
T 3b60_A          514 ESERAIQAALDELQKNRTSLVI------------AHRLSTIE-QADEIVVVEDGIIVERGT  561 (582)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEE------------CSCGGGTT-TCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEE------------eccHHHHH-hCCEEEEEECCEEEEecC
Confidence            9999884    12357766552            34433333 489999888887765443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=8.9e-28  Score=230.43  Aligned_cols=117  Identities=27%  Similarity=0.340  Sum_probs=101.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEE-EEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTG-FVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~-~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|+|++++ ||+++|+||||||||||+|+|+|.+ +  .+|+|.++|.+..+ ..++.++ |++|+..+  .+||+||
T Consensus        20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~en   93 (263)
T 2pjz_A           20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDI   93 (263)
T ss_dssp             EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHH
T ss_pred             eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHH
Confidence            7899999999 9999999999999999999999998 5  57999999987642 1255799 99999876  8999999


Q ss_pred             HHHHHH---------------cCCc-h--------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           80 LVFIAL---------------FRLP-I--------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        80 l~f~~~---------------~~~~-~--------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +.+...               +++. .              ||++||++|+.+|++++|||||+|||+.++..+.
T Consensus        94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~  168 (263)
T 2pjz_A           94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS  168 (263)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred             HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH
Confidence            987532               2232 1              8999999999999999999999999999999884

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=4.2e-28  Score=257.84  Aligned_cols=159  Identities=26%  Similarity=0.391  Sum_probs=127.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.+||.+..+    ..++.++||+|++.+++ .||+
T Consensus       370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~  446 (598)
T 3qf4_B          370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVK  446 (598)
T ss_dssp             SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHH
T ss_pred             cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHH
Confidence            7999999999999999999999999999999999997  478999999988753    35678999999998885 5999


Q ss_pred             HHHHHHHH----------c----------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL----------F----------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~----------~----------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...          +          ++|                  +||++|||+|+.+|++++|||||||||+.+
T Consensus       447 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~  526 (598)
T 3qf4_B          447 ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT  526 (598)
T ss_dssp             HHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence            99986421          0          111                  189999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      +..+.    -+.+|+++..-            .|+..... .||.++.+.+|++...++.+
T Consensus       527 ~~~i~~~l~~~~~~~t~i~i------------tH~l~~~~-~~d~i~~l~~G~i~~~g~~~  574 (598)
T 3qf4_B          527 EKSIQAAMWKLMEGKTSIII------------AHRLNTIK-NADLIIVLRDGEIVEMGKHD  574 (598)
T ss_dssp             HHHHHHHHHHHHTTSEEEEE------------SCCTTHHH-HCSEEEEECSSSEEECSCHH
T ss_pred             HHHHHHHHHHHcCCCEEEEE------------ecCHHHHH-cCCEEEEEECCEEEEECCHH
Confidence            98883    12367776653            34433322 38888888888876655443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.95  E-value=6.4e-28  Score=255.70  Aligned_cols=157  Identities=22%  Similarity=0.334  Sum_probs=125.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.+||.+..+    ..++.++||+|++.+++ .||+
T Consensus       358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~  434 (582)
T 3b5x_A          358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIA  434 (582)
T ss_pred             ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHH
Confidence            79999999999999999999999999999999999874  67999999987642    35678999999998887 4999


Q ss_pred             HHHHHHH--H------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIA--L------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~--~------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ||+.+..  .            .       ++|                  +||++|||+|+.+|++++|||||+|||+.
T Consensus       435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~  514 (582)
T 3b5x_A          435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE  514 (582)
T ss_pred             HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence            9998753  0            0       111                  18999999999999999999999999999


Q ss_pred             HHHHHH--H--hcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCC
Q 048308          119 IAKQIL--L--NSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPK  174 (413)
Q Consensus       119 ~~~~i~--l--l~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~  174 (413)
                      ++.++.  +  +.+|+++..-+            |+..... .||.++.+.+|+....++
T Consensus       515 ~~~~i~~~l~~~~~~~tvi~it------------H~~~~~~-~~d~i~~l~~G~i~~~g~  561 (582)
T 3b5x_A          515 SERAIQAALDELQKNKTVLVIA------------HRLSTIE-QADEILVVDEGEIIERGR  561 (582)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEe------------cCHHHHH-hCCEEEEEECCEEEEECC
Confidence            999884  1  23577665532            3322222 388888888887765444

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.94  E-value=2.8e-27  Score=229.99  Aligned_cols=123  Identities=25%  Similarity=0.355  Sum_probs=103.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|         .++|++|+..+++. ||+||+
T Consensus        52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~enl  119 (290)
T 2bbs_A           52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQNSWIMPG-TIKENI  119 (290)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---------CEEEECSSCCCCSS-BHHHHH
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---------EEEEEeCCCccCcc-cHHHHh
Confidence            37999999999999999999999999999999999987  4789999998         38999999988875 999998


Q ss_pred             HHHH------------HcC-------Cc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIA------------LFR-------LP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~------------~~~-------~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      . ..            ..+       ++                  +||++||++|+.+|++++|||||+|||+.++..+
T Consensus       120 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i  198 (290)
T 2bbs_A          120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI  198 (290)
T ss_dssp             H-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred             h-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence            5 21            011       11                  2899999999999999999999999999999998


Q ss_pred             HH--h---cCCcEEEecC
Q 048308          124 LL--N---SEGNSLHVGK  136 (413)
Q Consensus       124 ~l--l---~~G~~v~~G~  136 (413)
                      .-  +   .+|+++..-+
T Consensus       199 ~~~ll~~~~~~~tviivt  216 (290)
T 2bbs_A          199 FESCVCKLMANKTRILVT  216 (290)
T ss_dssp             HHHCCCCCTTTSEEEEEC
T ss_pred             HHHHHHHhhCCCEEEEEe
Confidence            52  2   2466665543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=1.1e-26  Score=266.01  Aligned_cols=120  Identities=28%  Similarity=0.457  Sum_probs=105.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      ++|+|+|++++|||.+||+||||||||||+++|.|.++  +.+|+|.+||.++.+    ..|+++++|+|++.+|+. |+
T Consensus      1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TI 1169 (1321)
T 4f4c_A         1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SI 1169 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EH
T ss_pred             ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cH
Confidence            38999999999999999999999999999999999997  467999999998753    568899999999998864 99


Q ss_pred             HHHHHHHHH---------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           77 TETLVFIAL---------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        77 ~e~l~f~~~---------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      |||+.|...               .       ++|                  +||++|||||+.+|++|+||||||+||
T Consensus      1170 reNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A         1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp             HHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred             HHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence            999865310               0       122                  289999999999999999999999999


Q ss_pred             HHHHHHH
Q 048308          117 STIAKQI  123 (413)
Q Consensus       117 ~~~~~~i  123 (413)
                      +.+...|
T Consensus      1250 ~~tE~~I 1256 (1321)
T 4f4c_A         1250 TESEKVV 1256 (1321)
T ss_dssp             SHHHHHH
T ss_pred             HHHHHHH
Confidence            9999887

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=8.8e-26  Score=258.01  Aligned_cols=119  Identities=27%  Similarity=0.446  Sum_probs=104.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||.++|+||||||||||+++|+|.++  +.+|+|.++|.++..    ..++.++||+|++.+++. ||+
T Consensus       405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~  481 (1284)
T 3g5u_A          405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIA  481 (1284)
T ss_dssp             SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHH
T ss_pred             ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHH
Confidence            7999999999999999999999999999999999997  478999999987643    456679999999998865 999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++|+||||||+||+.+
T Consensus       482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~  561 (1284)
T 3g5u_A          482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES  561 (1284)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            99988521             0       111                  289999999999999999999999999999


Q ss_pred             HHHH
Q 048308          120 AKQI  123 (413)
Q Consensus       120 ~~~i  123 (413)
                      ...+
T Consensus       562 ~~~i  565 (1284)
T 3g5u_A          562 EAVV  565 (1284)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8776

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.92  E-value=7.2e-26  Score=259.33  Aligned_cols=138  Identities=25%  Similarity=0.417  Sum_probs=118.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .+|+|+|++++|||.+||+||||||||||+++|.|.++  +.+|+|.+||.++.+    ..++.++||+|++.+|. -|+
T Consensus       432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI  508 (1321)
T 4f4c_A          432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTI  508 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEH
T ss_pred             ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHhhcccccCCcceeeC-Cch
Confidence            37999999999999999999999999999999999997  578999999998753    46778999999998875 599


Q ss_pred             HHHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +||+.|...             .       ++|                  +||++||||++.||++++||||||+||+.
T Consensus       509 ~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~  588 (1321)
T 4f4c_A          509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE  588 (1321)
T ss_dssp             HHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT
T ss_pred             hHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH
Confidence            999987521             0       112                  28999999999999999999999999999


Q ss_pred             HHHHH-----------------------------HHhcCCcEEEecCcchHh
Q 048308          119 IAKQI-----------------------------LLNSEGNSLHVGKGDGVM  141 (413)
Q Consensus       119 ~~~~i-----------------------------~ll~~G~~v~~G~~~~~~  141 (413)
                      +...+                             ++|++|+++..|+.++..
T Consensus       589 te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~  640 (1321)
T 4f4c_A          589 SEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM  640 (1321)
T ss_dssp             THHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHH
Confidence            87665                             477888888888877764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=1.9e-25  Score=255.25  Aligned_cols=158  Identities=25%  Similarity=0.421  Sum_probs=128.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|+|++++|||+++|+||||||||||+++|+|.++  +.+|+|.++|.++.+    ..++.++||+|++.++ +.||+
T Consensus      1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~ 1124 (1284)
T 3g5u_A         1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIA 1124 (1284)
T ss_dssp             SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHH
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEcccCCHHHHHhceEEECCCCccc-cccHH
Confidence            7999999999999999999999999999999999987  478999999998753    4567899999999877 56999


Q ss_pred             HHHHHHHH----------------------cCCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           78 ETLVFIAL----------------------FRLP------------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        78 e~l~f~~~----------------------~~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      ||+.+...                      .++|                  +||++|||+|+.+|++|+|||||+|||+
T Consensus      1125 eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A         1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp             HHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred             HHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            99965310                      0111                  2899999999999999999999999999


Q ss_pred             HHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          118 TIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       118 ~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      .+...+.    -..+|+++..            +.|+.....+ ||.++.+.+|++.+.++.
T Consensus      1205 ~~~~~i~~~l~~~~~~~tvi~------------isH~l~~i~~-~dri~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A         1205 ESEKVVQEALDKAREGRTCIV------------IAHRLSTIQN-ADLIVVIQNGKVKEHGTH 1253 (1284)
T ss_dssp             HHHHHHHHHHHHHSSSSCEEE------------ECSCTTGGGS-CSEEEEEETBEEEEEECH
T ss_pred             HHHHHHHHHHHHhCCCCEEEE------------EecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence            9998873    2235766555            3466655545 899999999887655443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.88  E-value=5.6e-23  Score=218.26  Aligned_cols=122  Identities=28%  Similarity=0.354  Sum_probs=98.8

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |+++|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.+         .+.++|++|+....+.+||.|++..
T Consensus       372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~~  440 (607)
T 3bk7_A          372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW---------DLTVAYKPQYIKAEYEGTVYELLSK  440 (607)
T ss_dssp             EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred             EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE---------eeEEEEEecCccCCCCCcHHHHHHh
Confidence            5677888999999999999999999999999999874  5688875         2469999999877788999999865


Q ss_pred             H-H-H-------------cCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh-c
Q 048308           83 I-A-L-------------FRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN-S  127 (413)
Q Consensus        83 ~-~-~-------------~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll-~  127 (413)
                      . . .             +++.              +||+.||++|+.+|++|+|||||+|||..++..+.     +. .
T Consensus       441 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~  520 (607)
T 3bk7_A          441 IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK  520 (607)
T ss_dssp             HHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            3 1 0             0111              28999999999999999999999999999998883     11 2


Q ss_pred             CCcEEEec
Q 048308          128 EGNSLHVG  135 (413)
Q Consensus       128 ~G~~v~~G  135 (413)
                      +|.++..-
T Consensus       521 ~g~tvi~v  528 (607)
T 3bk7_A          521 NEKTALVV  528 (607)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEE
Confidence            46655553

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.88  E-value=9.3e-23  Score=214.03  Aligned_cols=111  Identities=31%  Similarity=0.392  Sum_probs=93.3

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |+++|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.+         ...++||+|+....+.+||.|++..
T Consensus       302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~~  370 (538)
T 1yqt_A          302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW---------DLTVAYKPQYIKADYEGTVYELLSK  370 (538)
T ss_dssp             EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred             EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE---------CceEEEEecCCcCCCCCcHHHHHHh
Confidence            5667788899999999999999999999999999874  5688875         2459999999877788999998865


Q ss_pred             H-H-Hc-------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           83 I-A-LF-------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        83 ~-~-~~-------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      . . ..             ++.              +||+.||++|+.+|++|+|||||+|||..++..+.
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~  441 (538)
T 1yqt_A          371 IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS  441 (538)
T ss_dssp             HHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred             hhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence            3 1 10             110              18999999999999999999999999999998884

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.87  E-value=4.8e-22  Score=208.38  Aligned_cols=122  Identities=24%  Similarity=0.297  Sum_probs=99.5

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |+++|+++++||+++|+||||||||||+|+|+|.+++  .+|+|.+++        +.++|++|+......+||+|++.+
T Consensus       284 l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~~  353 (538)
T 3ozx_A          284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLEN  353 (538)
T ss_dssp             EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC--------CCEEEECSSCCCCCSSBHHHHHHH
T ss_pred             EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC--------eeeEeechhcccccCCCHHHHHHH
Confidence            4556788999999999999999999999999999874  679998764        358999998776678999999976


Q ss_pred             HHHcC----------------C--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----Hh-
Q 048308           83 IALFR----------------L--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LN-  126 (413)
Q Consensus        83 ~~~~~----------------~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll-  126 (413)
                      .....                +              .+|||.||++|+.+|++|+|||||+|||+.++..++     +. 
T Consensus       354 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~  433 (538)
T 3ozx_A          354 ASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR  433 (538)
T ss_dssp             HCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence            42110                0              018999999999999999999999999999998884     22 


Q ss_pred             cCCcEEEe
Q 048308          127 SEGNSLHV  134 (413)
Q Consensus       127 ~~G~~v~~  134 (413)
                      ..|.++..
T Consensus       434 ~~g~tvi~  441 (538)
T 3ozx_A          434 ERKAVTFI  441 (538)
T ss_dssp             HTTCEEEE
T ss_pred             hCCCEEEE
Confidence            24776655

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.87  E-value=9.2e-23  Score=219.47  Aligned_cols=140  Identities=26%  Similarity=0.333  Sum_probs=88.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHH---------------------HHHhCCCCCC-----CeeEEEEECCcccCh
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLP---------------------TTLGGRLSTG-----ETRGNIDYNNNPLSR   55 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl---------------------~~l~g~~~~~-----~~~G~i~~~g~~~~~   55 (413)
                      +|+|||+++++||+++|+||||||||||+                     ++++|...++     ...|.|.++|.....
T Consensus        33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~  112 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR  112 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC---
T ss_pred             ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhc
Confidence            79999999999999999999999999998                     7777765542     124677777765543


Q ss_pred             hccccEEEEecCCc-------------------cCCCCCHHHHHHHHH---------------------------HcCC-
Q 048308           56 TVKRKTGFVAHSNV-------------------FYLHLTVTETLVFIA---------------------------LFRL-   88 (413)
Q Consensus        56 ~~~~~~~~v~q~~~-------------------~~~~lTv~e~l~f~~---------------------------~~~~-   88 (413)
                      ..++.+++|+|...                   .++.+||+|++.+..                           .+++ 
T Consensus       113 ~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~  192 (670)
T 3ux8_A          113 NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLD  192 (670)
T ss_dssp             --CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCT
T ss_pred             cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence            33334455544322                   246789999987631                           1111 


Q ss_pred             ----c----------hhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH-----------------------------
Q 048308           89 ----P----------IKRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI-----------------------------  123 (413)
Q Consensus        89 ----~----------~krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i-----------------------------  123 (413)
                          .          +||+.||++|+.+|+  +|+|||||+|||+.++..+                             
T Consensus       193 ~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~  272 (670)
T 3ux8_A          193 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADY  272 (670)
T ss_dssp             TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSE
T ss_pred             hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence                1          289999999999998  9999999999999999877                             


Q ss_pred             -HHh------cCCcEEEecCcchHh
Q 048308          124 -LLN------SEGNSLHVGKGDGVM  141 (413)
Q Consensus       124 -~ll------~~G~~v~~G~~~~~~  141 (413)
                       ++|      ++|++++.|+++++.
T Consensus       273 ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          273 LIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             EEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             EEEecccccccCCEEEEecCHHHHh
Confidence             244      788888888877653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.4e-21  Score=207.41  Aligned_cols=122  Identities=23%  Similarity=0.262  Sum_probs=95.3

Q ss_pred             ccccceeEEecC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLG-----ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~G-----e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +++|+|+++++|     |+++|+||||||||||+|+|+|++++  .+|+.      .   .+..++|++|+.......||
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~---~~~~i~~~~q~~~~~~~~tv  430 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I---PKLNVSMKPQKIAPKFPGTV  430 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C---CSCCEEEECSSCCCCCCSBH
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------c---cCCcEEEecccccccCCccH
Confidence            478999999988     78999999999999999999999874  45641      1   13468999998776667899


Q ss_pred             HHHHHHHHH---------------cCC--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH---
Q 048308           77 TETLVFIAL---------------FRL--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL---  124 (413)
Q Consensus        77 ~e~l~f~~~---------------~~~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~---  124 (413)
                      +|++.....               +++              .+|||.||++|+.+|++|+|||||+|||+.++..++   
T Consensus       431 ~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll  510 (608)
T 3j16_B          431 RQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI  510 (608)
T ss_dssp             HHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            998753210               111              028999999999999999999999999999998873   


Q ss_pred             --Hh-cCCcEEEe
Q 048308          125 --LN-SEGNSLHV  134 (413)
Q Consensus       125 --ll-~~G~~v~~  134 (413)
                        +. .+|.++..
T Consensus       511 ~~l~~~~g~tvii  523 (608)
T 3j16_B          511 RRFILHNKKTAFI  523 (608)
T ss_dssp             HHHHHHHTCEEEE
T ss_pred             HHHHHhCCCEEEE
Confidence              22 24666655

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.84  E-value=2.8e-21  Score=202.75  Aligned_cols=130  Identities=28%  Similarity=0.354  Sum_probs=96.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE---------EECCcccCh------hccccEEEEec
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---------DYNNNPLSR------TVKRKTGFVAH   66 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~------~~~~~~~~v~q   66 (413)
                      +|+|+| .+++||+++|+||||||||||+|+|+|.+++  .+|++         .++|.+...      ..+..+++++|
T Consensus        37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q  113 (538)
T 1yqt_A           37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ  113 (538)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred             cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence            689999 9999999999999999999999999999874  34654         345654321      11235788888


Q ss_pred             CCccCCC---CCHHHHHHHH----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           67 SNVFYLH---LTVTETLVFI----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        67 ~~~~~~~---lTv~e~l~f~----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      +....+.   .|+.|++...          ..+++.              +||+.||++|+.+|++|+|||||+|||+.+
T Consensus       114 ~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~  193 (538)
T 1yqt_A          114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ  193 (538)
T ss_dssp             CGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             hhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence            6543332   3888887532          112221              289999999999999999999999999999


Q ss_pred             HHHHH-----HhcCCcEEEe
Q 048308          120 AKQIL-----LNSEGNSLHV  134 (413)
Q Consensus       120 ~~~i~-----ll~~G~~v~~  134 (413)
                      +..+.     +..+|.++-.
T Consensus       194 ~~~l~~~L~~l~~~g~tvi~  213 (538)
T 1yqt_A          194 RLNAARAIRRLSEEGKSVLV  213 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEE
Confidence            98873     2345665555

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.84  E-value=2.6e-21  Score=205.40  Aligned_cols=132  Identities=27%  Similarity=0.348  Sum_probs=97.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE---------EECCcccCh------hccccEEEEec
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI---------DYNNNPLSR------TVKRKTGFVAH   66 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~------~~~~~~~~v~q   66 (413)
                      +|+|+| .+++||+++|+||||||||||+|+|+|.+++  .+|++         .++|.+...      ..+..+++++|
T Consensus       107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q  183 (607)
T 3bk7_A          107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ  183 (607)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred             eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence            689999 9999999999999999999999999999874  44664         345654321      11235778888


Q ss_pred             CCccCC---CCCHHHHHHHH----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           67 SNVFYL---HLTVTETLVFI----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        67 ~~~~~~---~lTv~e~l~f~----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      .....+   ..||+|++...          ..+++.              +||++||++|+.+|++|+|||||+|||+.+
T Consensus       184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~  263 (607)
T 3bk7_A          184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ  263 (607)
T ss_dssp             CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred             hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence            643322   23899987531          122221              289999999999999999999999999999


Q ss_pred             HHHHH-----HhcCCcEEEecC
Q 048308          120 AKQIL-----LNSEGNSLHVGK  136 (413)
Q Consensus       120 ~~~i~-----ll~~G~~v~~G~  136 (413)
                      +..+.     +..+|.++..-+
T Consensus       264 ~~~l~~~L~~l~~~g~tvIivs  285 (607)
T 3bk7_A          264 RLKVARVIRRLANEGKAVLVVE  285 (607)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEEEe
Confidence            98873     334577665533

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.83  E-value=5.3e-21  Score=210.72  Aligned_cols=110  Identities=24%  Similarity=0.343  Sum_probs=88.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-ccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-VFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l   80 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|        |+|  +|.+....  ..++|++|+. .+++.+||.|++
T Consensus       450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~ltv~e~l  517 (986)
T 2iw3_A          450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTSVLDFV  517 (986)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSBHHHHH
T ss_pred             eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc--eeEEEEcccccccccCCcHHHHH
Confidence            6899999999999999999999999999999984        111  23322111  2368998874 678899999998


Q ss_pred             HH------------HHHcCCc---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VF------------IALFRLP---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f------------~~~~~~~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .+            ...++++               +||+.||++|+.+|++|+|||||+|||+.++..+
T Consensus       518 ~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l  587 (986)
T 2iw3_A          518 FESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL  587 (986)
T ss_dssp             HTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence            63            1123332               2899999999999999999999999999999887

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.83  E-value=6e-21  Score=210.30  Aligned_cols=47  Identities=34%  Similarity=0.518  Sum_probs=44.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN   50 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g   50 (413)
                      +|+|+|+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|
T Consensus       688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~  734 (986)
T 2iw3_A          688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHE  734 (986)
T ss_dssp             SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECT
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcC
Confidence            7899999999999999999999999999999999987  4689999986

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.82  E-value=8.3e-21  Score=204.23  Aligned_cols=157  Identities=30%  Similarity=0.437  Sum_probs=101.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhC---------------CCCC--C--CeeEEEEECCcccChhc-----
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG---------------RLST--G--ETRGNIDYNNNPLSRTV-----   57 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g---------------~~~~--~--~~~G~i~~~g~~~~~~~-----   57 (413)
                      +|+|||+++++||+++|+||||||||||+|+|.+               ....  +  ...|.|.+++.+.....     
T Consensus       337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~  416 (670)
T 3ux8_A          337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA  416 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred             ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence            6899999999999999999999999999987641               1000  0  23467777776542100     


Q ss_pred             ----------------------------------------cccEEEEecCCccC--------------------------
Q 048308           58 ----------------------------------------KRKTGFVAHSNVFY--------------------------   71 (413)
Q Consensus        58 ----------------------------------------~~~~~~v~q~~~~~--------------------------   71 (413)
                                                              .+..|++.|+..++                          
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (670)
T 3ux8_A          417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG  496 (670)
T ss_dssp             HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred             hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence                                                    00112333322222                          


Q ss_pred             ------CCCCHHHHHHHHHH-------------cCC---------------chhHHHHHHHHhhCC---CEEEEeCCCCC
Q 048308           72 ------LHLTVTETLVFIAL-------------FRL---------------PIKRVSRAQELLINP---SLLFLDEPASG  114 (413)
Q Consensus        72 ------~~lTv~e~l~f~~~-------------~~~---------------~~krvsia~~l~~~p---~llllDEPtsg  114 (413)
                            ..+||+|++.+...             +++               .+|||+||++|+.+|   ++|+|||||+|
T Consensus       497 ~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~  576 (670)
T 3ux8_A          497 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG  576 (670)
T ss_dssp             BCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTT
T ss_pred             CCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCC
Confidence                  25799999876321             111               128999999999887   59999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh------hCCccCC
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL------ANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~------~~~~~~~  171 (413)
                      ||+.++.+++     +..+|.+|..-+            |+..... .||+++.+      ..|++..
T Consensus       577 LD~~~~~~i~~~l~~l~~~g~tvi~vt------------Hd~~~~~-~~d~i~~l~~~~g~~~G~i~~  631 (670)
T 3ux8_A          577 LHVDDIARLLDVLHRLVDNGDTVLVIE------------HNLDVIK-TADYIIDLGPEGGDRGGQIVA  631 (670)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHHT-TCSEEEEEESSSGGGCCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEe------------CCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence            9999998884     334677766633            3332222 37888777      6776544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.76  E-value=1.6e-19  Score=189.33  Aligned_cols=124  Identities=23%  Similarity=0.307  Sum_probs=85.6

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE-----------EECCcccChh----c--cccEEEEecCCcc--
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI-----------DYNNNPLSRT----V--KRKTGFVAHSNVF--   70 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~~----~--~~~~~~v~q~~~~--   70 (413)
                      .++||+++|+||||||||||+|+|+|.+++  .+|+|           .++|.+....    .  ...+..+.|....  
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~   99 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS   99 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence            379999999999999999999999999874  45777           4666554211    1  1123333333211  


Q ss_pred             -CCCCCHHHHHHHH----------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-
Q 048308           71 -YLHLTVTETLVFI----------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-  124 (413)
Q Consensus        71 -~~~lTv~e~l~f~----------~~~~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-  124 (413)
                       +...||+|.+.-.          ..+++.              +||+.||++|+.+|++|+|||||+|||+.++..+. 
T Consensus       100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~  179 (538)
T 3ozx_A          100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK  179 (538)
T ss_dssp             TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence             1234788766421          112221              28999999999999999999999999999998873 


Q ss_pred             ---HhcCCcEEEec
Q 048308          125 ---LNSEGNSLHVG  135 (413)
Q Consensus       125 ---ll~~G~~v~~G  135 (413)
                         -+.+|.++..-
T Consensus       180 ~l~~l~~g~tii~v  193 (538)
T 3ozx_A          180 AIRELLKNKYVIVV  193 (538)
T ss_dssp             HHHHHCTTSEEEEE
T ss_pred             HHHHHhCCCEEEEE
Confidence               22347666553

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.9e-20  Score=192.67  Aligned_cols=111  Identities=21%  Similarity=0.193  Sum_probs=91.2

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-E-EEECCcccChhccccEEEEecCCc---cCCCCCHHH
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-N-IDYNNNPLSRTVKRKTGFVAHSNV---FYLHLTVTE   78 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~v~q~~~---~~~~lTv~e   78 (413)
                      .++|+.+++||+++|+||||||||||+|+|+|...  +.+| + |.++|.     .++.++|++|+..   +.+.+||+|
T Consensus       129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~e  201 (460)
T 2npi_A          129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQL  201 (460)
T ss_dssp             HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred             hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhh
Confidence            46889999999999999999999999999999986  4679 8 999983     2567899999874   455679998


Q ss_pred             HHHHHHHc-----------------CC------------chhHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHH
Q 048308           79 TLVFIALF-----------------RL------------PIKRVSRAQE--LLINPSL----LFLDE-PASGLDSTIAKQ  122 (413)
Q Consensus        79 ~l~f~~~~-----------------~~------------~~krvsia~~--l~~~p~l----lllDE-PtsgLD~~~~~~  122 (413)
                      ++ |....                 ++            .+||+++|++  |+.+|++    ++||| ||+|||.. ...
T Consensus       202 ni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~  279 (460)
T 2npi_A          202 PT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAE  279 (460)
T ss_dssp             TT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHH
T ss_pred             hh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHH
Confidence            88 53221                 00            0189999999  9999999    99999 99999998 444


Q ss_pred             H
Q 048308          123 I  123 (413)
Q Consensus       123 i  123 (413)
                      +
T Consensus       280 l  280 (460)
T 2npi_A          280 L  280 (460)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.73  E-value=3.3e-19  Score=174.09  Aligned_cols=117  Identities=16%  Similarity=0.082  Sum_probs=95.5

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc--cccEEEEecCCc-cCC
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV--KRKTGFVAHSNV-FYL   72 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~--~~~~~~v~q~~~-~~~   72 (413)
                      +++|+.+++|++++|+||||||||||++.|+|++++  ..|+|.++|.+...        .+  ++.++|++|++. .++
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            578899999999999999999999999999999863  46999999876532        12  246899999988 889


Q ss_pred             CCCHHHHHHHHHHcCC---------------------chhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH
Q 048308           73 HLTVTETLVFIALFRL---------------------PIKRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        73 ~lTv~e~l~f~~~~~~---------------------~~krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i  123 (413)
                      .+|++|++.++...+.                     +++|+.||++++.+|+  +|+|| ||+|||+.++.+-
T Consensus       169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~  241 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQARE  241 (302)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHH
Confidence            9999999988653211                     1279999999999999  99999 9999999877543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.73  E-value=7e-18  Score=185.55  Aligned_cols=160  Identities=29%  Similarity=0.418  Sum_probs=107.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHH---------HHHhCCCCC-C---Cee------EEEEECCcccChh------
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLP---------TTLGGRLST-G---ETR------GNIDYNNNPLSRT------   56 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl---------~~l~g~~~~-~---~~~------G~i~~~g~~~~~~------   56 (413)
                      .|+|||+++++||+++|+|+||||||||+         +.+.+.... +   ..+      +.+.++..+....      
T Consensus       599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a  678 (916)
T 3pih_A          599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA  678 (916)
T ss_dssp             TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred             cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence            58999999999999999999999999997         444443221 1   122      3345544332100      


Q ss_pred             ---------------------------------------ccccEEEEecCCccCC-------------------------
Q 048308           57 ---------------------------------------VKRKTGFVAHSNVFYL-------------------------   72 (413)
Q Consensus        57 ---------------------------------------~~~~~~~v~q~~~~~~-------------------------   72 (413)
                                                             ..+..|++.++..+++                         
T Consensus       679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g  758 (916)
T 3pih_A          679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG  758 (916)
T ss_dssp             HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred             chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence                                                   0012467777665554                         


Q ss_pred             -------CCCHHHHHHHHHH-------------cCC---------------chhHHHHHHHHhhCC---CEEEEeCCCCC
Q 048308           73 -------HLTVTETLVFIAL-------------FRL---------------PIKRVSRAQELLINP---SLLFLDEPASG  114 (413)
Q Consensus        73 -------~lTv~e~l~f~~~-------------~~~---------------~~krvsia~~l~~~p---~llllDEPtsg  114 (413)
                             .+||.|++.|...             +++               .+||+.||++|+.+|   ++++|||||+|
T Consensus       759 ~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsG  838 (916)
T 3pih_A          759 KNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVG  838 (916)
T ss_dssp             BCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTT
T ss_pred             CCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCC
Confidence                   4788998876321             111               128999999999875   79999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh------hCCccCCCCC
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL------ANGVVSGDPK  174 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~------~~~~~~~~~~  174 (413)
                      ||+.+..+++     +.++|++|..-+            |+.....+ ||+++++      ..|++...++
T Consensus       839 LD~~~~~~L~~lL~~L~~~G~TVIvI~------------HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gt  896 (916)
T 3pih_A          839 LHFEDVRKLVEVLHRLVDRGNTVIVIE------------HNLDVIKN-ADHIIDLGPEGGKEGGYIVATGT  896 (916)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHHTT-CSEEEEEESSSGGGCCEEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEe------------CCHHHHHh-CCEEEEecCCCCCCCCEEEEEcC
Confidence            9999999884     335687766633            33333334 8898888      6777654433

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.8e-18  Score=183.59  Aligned_cols=130  Identities=18%  Similarity=0.238  Sum_probs=84.3

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE-----------EECCcccCh----hcccc--EEEEe
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI-----------DYNNNPLSR----TVKRK--TGFVA   65 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~----~~~~~--~~~v~   65 (413)
                      |++++ .+++||+++|+||||||||||+|+|+|.+++  .+|+|           .+.|.....    ...+.  ..+.+
T Consensus        94 l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  170 (608)
T 3j16_B           94 LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP  170 (608)
T ss_dssp             EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred             ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence            34444 5789999999999999999999999999875  45766           233332211    01111  12233


Q ss_pred             cCCcc------CCCCCHHHHHHHH------------HHcCCc--------------hhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           66 HSNVF------YLHLTVTETLVFI------------ALFRLP--------------IKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        66 q~~~~------~~~lTv~e~l~f~------------~~~~~~--------------~krvsia~~l~~~p~llllDEPts  113 (413)
                      |....      -+..++.+.+...            ..+++.              +||++||++|+.+|++|+|||||+
T Consensus       171 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts  250 (608)
T 3j16_B          171 QYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS  250 (608)
T ss_dssp             CCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTT
T ss_pred             hhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            32111      1223555544321            122221              289999999999999999999999


Q ss_pred             CCCHHHHHHHH-----HhcCCcEEEec
Q 048308          114 GLDSTIAKQIL-----LNSEGNSLHVG  135 (413)
Q Consensus       114 gLD~~~~~~i~-----ll~~G~~v~~G  135 (413)
                      |||+.++..+.     +..+|.++..-
T Consensus       251 ~LD~~~~~~l~~~l~~l~~~g~tvi~v  277 (608)
T 3j16_B          251 YLDVKQRLNAAQIIRSLLAPTKYVICV  277 (608)
T ss_dssp             TCCHHHHHHHHHHHHGGGTTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            99999998773     33457766553

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.73  E-value=4.7e-18  Score=186.22  Aligned_cols=157  Identities=31%  Similarity=0.487  Sum_probs=105.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHh-C----CC-----CCC---CeeE------EEEECCcccChhc-----
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLG-G----RL-----STG---ETRG------NIDYNNNPLSRTV-----   57 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~-g----~~-----~~~---~~~G------~i~~~g~~~~~~~-----   57 (413)
                      .|+|||+++++||+++|+|+||||||||+++|. |    .+     .++   ...|      .|.+++.++....     
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa  718 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA  718 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence            589999999999999999999999999999853 2    11     122   1234      5788887652100     


Q ss_pred             ------------------cccEEEEecCCcc----------------------CC-------------------------
Q 048308           58 ------------------KRKTGFVAHSNVF----------------------YL-------------------------   72 (413)
Q Consensus        58 ------------------~~~~~~v~q~~~~----------------------~~-------------------------   72 (413)
                                        .+..||++|...+                      .+                         
T Consensus       719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g  798 (972)
T 2r6f_A          719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG  798 (972)
T ss_dssp             HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred             hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence                              1234555553211                      01                         


Q ss_pred             -------CCCHHHHHHHHH-------------HcCCc---------------hhHHHHHHHHhhCC---CEEEEeCCCCC
Q 048308           73 -------HLTVTETLVFIA-------------LFRLP---------------IKRVSRAQELLINP---SLLFLDEPASG  114 (413)
Q Consensus        73 -------~lTv~e~l~f~~-------------~~~~~---------------~krvsia~~l~~~p---~llllDEPtsg  114 (413)
                             .+||.|++.|..             .+++.               +||+.||++|+.+|   ++++|||||+|
T Consensus       799 ~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsG  878 (972)
T 2r6f_A          799 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG  878 (972)
T ss_dssp             BCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTT
T ss_pred             CCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence                   468888876521             11111               28999999999765   99999999999


Q ss_pred             CCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHh------hCCccCC
Q 048308          115 LDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDL------ANGVVSG  171 (413)
Q Consensus       115 LD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~------~~~~~~~  171 (413)
                      ||..++.+++     +..+|.+|..-+            |+.... ..||+++.+      ..|++..
T Consensus       879 LD~~~~~~l~~lL~~L~~~G~TVIvis------------Hdl~~i-~~aDrIivL~p~gG~~~G~Iv~  933 (972)
T 2r6f_A          879 LHVDDIARLLDVLHRLVDNGDTVLVIE------------HNLDVI-KTADYIIDLGPEGGDRGGQIVA  933 (972)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHH-TTCSEEEEECSSSTTSCCSEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEc------------CCHHHH-HhCCEEEEEcCCCCCCCCEEEE
Confidence            9999999884     334687776643            222222 237888887      4666543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.72  E-value=1.3e-17  Score=168.69  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCC------------------------------------CCeeEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLST------------------------------------GETRGN   45 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~------------------------------------~~~~G~   45 (413)
                      +++++|+.+++| +++|+||||||||||+++|++....                                    ...+|.
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~  128 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA  128 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence            588999999999 9999999999999999999765531                                    023588


Q ss_pred             EEECCcccCh-----hccccEEEEecCCccC
Q 048308           46 IDYNNNPLSR-----TVKRKTGFVAHSNVFY   71 (413)
Q Consensus        46 i~~~g~~~~~-----~~~~~~~~v~q~~~~~   71 (413)
                      +.+||.+.+.     ..+..+++++|++.++
T Consensus       129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~  159 (415)
T 4aby_A          129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVS  159 (415)
T ss_dssp             EEETTEEECHHHHHHHHTTTEEEETTTCTTT
T ss_pred             EEECCEECCHHHHHHHHhhceEEecCccccc
Confidence            9999998753     1233489999987654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.71  E-value=9.4e-20  Score=168.70  Aligned_cols=120  Identities=17%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEEecCC--ccCCCC-CHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFVAHSN--VFYLHL-TVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v~q~~--~~~~~l-Tv~   77 (413)
                      +|+|+    ++||+++|+||||||||||+|+|+|. ++  .+|+|...... .....++.++|++|+.  .+.+.. ++.
T Consensus        15 ~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~   87 (208)
T 3b85_A           15 YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLH   87 (208)
T ss_dssp             HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHH
T ss_pred             HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHH
Confidence            56675    89999999999999999999999999 63  44555211000 1112356799999975  110110 111


Q ss_pred             HHHH----------HHHHcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh---cCCcEEE
Q 048308           78 ETLV----------FIALFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN---SEGNSLH  133 (413)
Q Consensus        78 e~l~----------f~~~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll---~~G~~v~  133 (413)
                      +.+.          .... + ..+||++||++|+.+|++++|||||+|    ++..+. ++   .+|.++.
T Consensus        88 ~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii  153 (208)
T 3b85_A           88 DALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV  153 (208)
T ss_dssp             HHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE
T ss_pred             HHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE
Confidence            1110          0011 2 124899999999999999999999999    444442 11   4576655

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.71  E-value=2.1e-18  Score=171.95  Aligned_cols=117  Identities=16%  Similarity=0.082  Sum_probs=97.2

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc--cccEEEEecCCc-cCC
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV--KRKTGFVAHSNV-FYL   72 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~--~~~~~~v~q~~~-~~~   72 (413)
                      +++|+.+++|++++|+||||||||||++.|+|++++  ..|+|.++|.+...        .+  ++.++|++|+.. +.+
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p  225 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  225 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence            468889999999999999999999999999999863  46999999876532        11  346899999988 889


Q ss_pred             CCCHHHHHHHHHHcCC---------------------chhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH
Q 048308           73 HLTVTETLVFIALFRL---------------------PIKRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        73 ~lTv~e~l~f~~~~~~---------------------~~krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i  123 (413)
                      .+|++|++.++...+.                     +++|+.||++++.+|+  +|+|| ||+|||+.++.+-
T Consensus       226 ~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~  298 (359)
T 2og2_A          226 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQARE  298 (359)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHH
Confidence            9999999988653211                     1279999999999999  99999 9999999877543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.71  E-value=1.7e-19  Score=161.44  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=66.6

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCcc-CCCCCHHHHHHHH
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVF-YLHLTVTETLVFI   83 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~-~~~lTv~e~l~f~   83 (413)
                      |||+++++||+++|+||||||||||+|++.+-..        .+++.    .   ..++++|+... ...-++.+.+...
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~d----~---~~g~~~~~~~~~~~~~~~~~~~~~~   65 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISSD----F---CRGLMSDDENDQTVTGAAFDVLHYI   65 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEHH----H---HHHHHCSSTTCGGGHHHHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEccH----H---HHHHhcCcccchhhHHHHHHHHHHH
Confidence            6899999999999999999999999997643110        11111    0   11344444211 1111233433332


Q ss_pred             HH----cCC-------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           84 AL----FRL-------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        84 ~~----~~~-------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      ..    .+.             .+||+.||++++.+|++++|||||+|||+.++
T Consensus        66 ~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~  119 (171)
T 4gp7_A           66 VSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK  119 (171)
T ss_dssp             HHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred             HHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence            21    111             13899999999999999999999999999944

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.70  E-value=2e-17  Score=180.53  Aligned_cols=67  Identities=27%  Similarity=0.447  Sum_probs=50.7

Q ss_pred             hHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHH
Q 048308           91 KRVSRAQELLIN---PSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL  162 (413)
Q Consensus        91 krvsia~~l~~~---p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~  162 (413)
                      ||+.||++|+.+   |++++|||||+|||..+..+++     +.++|.+|..-+            |+.... ..||+++
T Consensus       737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvis------------Hdl~~i-~~aDrii  803 (842)
T 2vf7_A          737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE------------HKMQVV-AASDWVL  803 (842)
T ss_dssp             HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC------------CCHHHH-TTCSEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc------------CCHHHH-HhCCEEE
Confidence            899999999996   7999999999999999999884     335687776633            333333 3478888


Q ss_pred             Hh------hCCccC
Q 048308          163 DL------ANGVVS  170 (413)
Q Consensus       163 ~~------~~~~~~  170 (413)
                      ++      ..|++.
T Consensus       804 ~L~p~~g~~~G~Iv  817 (842)
T 2vf7_A          804 DIGPGAGEDGGRLV  817 (842)
T ss_dssp             EECSSSGGGCCSEE
T ss_pred             EECCCCCCCCCEEE
Confidence            87      466654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.70  E-value=6.6e-20  Score=185.94  Aligned_cols=114  Identities=13%  Similarity=0.099  Sum_probs=88.1

Q ss_pred             ccccceeEEecCc--------------------EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccE
Q 048308            2 ILKGIRGVSSLGE--------------------LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKT   61 (413)
Q Consensus         2 iL~~vs~~~~~Ge--------------------~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~   61 (413)
                      +|+|||+.+++||                    +++|+||||||||||+|+|+|+.++  .+|+|.++|.+..   +  .
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t---~--~  110 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT---M--E  110 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC-------C--C
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc---e--e
Confidence            5889999999999                    9999999999999999999999874  5688988886542   1  2


Q ss_pred             EEEecCCccCCCCCHHHHHHHH----------HHcCC--------------chhHHHHHHHHhh----------CCCEEE
Q 048308           62 GFVAHSNVFYLHLTVTETLVFI----------ALFRL--------------PIKRVSRAQELLI----------NPSLLF  107 (413)
Q Consensus        62 ~~v~q~~~~~~~lTv~e~l~f~----------~~~~~--------------~~krvsia~~l~~----------~p~lll  107 (413)
                      ++++|++ .++++|+.|++.+.          ...++              .++|+.||++|+.          +|++++
T Consensus       111 ~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll  189 (413)
T 1tq4_A          111 RHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI  189 (413)
T ss_dssp             CEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred             EEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence            6787764 35555555443221          11111              3489999999999          999999


Q ss_pred             EeCCCCCCCHHHHHHH
Q 048308          108 LDEPASGLDSTIAKQI  123 (413)
Q Consensus       108 lDEPtsgLD~~~~~~i  123 (413)
                      |||||+|||+.++.++
T Consensus       190 LDEPtsgLD~~~~~~l  205 (413)
T 1tq4_A          190 TNEADGEPQTFDKEKV  205 (413)
T ss_dssp             HHHHTTCCTTCCHHHH
T ss_pred             cCcccccCCHHHHHHH
Confidence            9999999999998877

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.66  E-value=5.1e-17  Score=155.40  Aligned_cols=112  Identities=19%  Similarity=0.199  Sum_probs=85.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGET-RGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +|+|+|  +++|++++|+||||||||||+++|+|.++  +. +|+|.++|.+.....+...+++.|...-...       
T Consensus        16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~-------   84 (261)
T 2eyu_A           16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDT-------   84 (261)
T ss_dssp             HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-------
T ss_pred             HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHHHhCCCH-------
Confidence            688999  89999999999999999999999999875  34 7999999987643333344566664211110       


Q ss_pred             HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEec
Q 048308           81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVG  135 (413)
Q Consensus        81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G  135 (413)
                              ..-|++||++|..+|+++++||||   |..+...++ ....|+.+..-
T Consensus        85 --------~~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t  129 (261)
T 2eyu_A           85 --------KSFADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGT  129 (261)
T ss_dssp             --------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEE
T ss_pred             --------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEE
Confidence                    113799999999999999999999   998877654 23468876553

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.62  E-value=3.4e-16  Score=154.54  Aligned_cols=129  Identities=15%  Similarity=0.089  Sum_probs=94.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +++++|+.+++|++++|+||||||||||+|+|+|.+++  .+|.|.++|.+...  ..++.++++.+             
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFFG-------------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEECB-------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEeC-------------
Confidence            57889999999999999999999999999999999874  57999999875311  24456777763             


Q ss_pred             HHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCc-EEEecCcchHhHHHHhcCCCCCCCCChh
Q 048308           80 LVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGN-SLHVGKGDGVMSYFVGIGFEPSAAMNPS  158 (413)
Q Consensus        80 l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~-~v~~G~~~~~~~~f~~~g~~~p~~~n~a  158 (413)
                             ....+|+.||++|..+|+++++||||+.   .....+--+..|+ ++..-.            |... ....+
T Consensus       225 -------gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~~l~~~~~g~~tvi~t~------------H~~~-~~~~~  281 (330)
T 2pt7_A          225 -------GNITSADCLKSCLRMRPDRIILGELRSS---EAYDFYNVLCSGHKGTLTTL------------HAGS-SEEAF  281 (330)
T ss_dssp             -------TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHHHHHHHHTTCCCEEEEE------------ECSS-HHHHH
T ss_pred             -------CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHHHHHHHhcCCCEEEEEE------------cccH-HHHHh
Confidence                   3345999999999999999999999982   3333333344554 332211            2211 23457


Q ss_pred             HHHHHhhCCc
Q 048308          159 DFLLDLANGV  168 (413)
Q Consensus       159 d~~~~~~~~~  168 (413)
                      |.++.+..|.
T Consensus       282 dri~~l~~g~  291 (330)
T 2pt7_A          282 IRLANMSSSN  291 (330)
T ss_dssp             HHHHHHHHTS
T ss_pred             hhheehhcCC
Confidence            8888887654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.61  E-value=1.3e-17  Score=160.33  Aligned_cols=109  Identities=20%  Similarity=0.190  Sum_probs=71.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-hccccEEEEecCCccCCCCCHHHHHHHHHHcCC-----
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-TVKRKTGFVAHSNVFYLHLTVTETLVFIALFRL-----   88 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~-----   88 (413)
                      .++|+||||||||||+|+|+|...  +.+|+|.++|.+... ..++.++|++|++.+++.+||.||+.|......     
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            479999999999999999999876  467999999987654 335679999999999999999998876532210     


Q ss_pred             ---------------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcC
Q 048308           89 ---------------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSE  128 (413)
Q Consensus        89 ---------------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~  128 (413)
                                           .+||+.+||+++.   ++++|||+.|||+.....+--+.+
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~  139 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSK  139 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHh
Confidence                                 1268888888765   999999999999988665544443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.60  E-value=1.3e-16  Score=144.04  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=68.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-hhccccEEEEecCCccCCCCCHHHHHHHHH-------Hc
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETLVFIA-------LF   86 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~-------~~   86 (413)
                      .++|+||||||||||+|+|+|.+.. ...|...   .+.. +..++.++|++|+.      ++.+++ ++.       ..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~~~~~~~~~~~   70 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FSSKFFTSKKLV   70 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEET------TCCEEE-EEETTCCCSSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HHhhcCCccccc
Confidence            5899999999999999999998741 2233211   1111 12356789999875      122222 000       00


Q ss_pred             C--------CchhHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH-Hhc-CCc
Q 048308           87 R--------LPIKRVSRAQE-----LLINPSLLFLDE--PASGLDSTIAKQIL-LNS-EGN  130 (413)
Q Consensus        87 ~--------~~~krvsia~~-----l~~~p~llllDE--PtsgLD~~~~~~i~-ll~-~G~  130 (413)
                      +        ..+||++||++     ++.+|++++|||  ||++||+.....+. ++. .|.
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~  131 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNV  131 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTS
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCC
Confidence            0        11389999996     999999999999  99999999998885 333 344

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.58  E-value=1.6e-17  Score=162.90  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=74.8

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCc
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLP   89 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~   89 (413)
                      +++|++++|+||||||||||+++|+|.+++  ..|      .       +.+++|+|++.+++. |++|++.+....+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G------~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~  150 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH------H-------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFP  150 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT------C-------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC------C-------CeEEEEecCccCCcc-cHHHHHHHHHhcCCC
Confidence            799999999999999999999999998763  112      1       458999999998888 999987542111111


Q ss_pred             -------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           90 -------------------------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        90 -------------------------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                                                     .+|+.+|++++.+|+++|+|||+..+|.
T Consensus       151 ~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          151 ESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             GGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             hHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence                                           1688899999999999999999999985

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.56  E-value=2.6e-17  Score=160.62  Aligned_cols=106  Identities=21%  Similarity=0.168  Sum_probs=73.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhcc-ccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVK-RKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~-~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|+|+.+++||+++|+||||||||||+++|+|.+     +|+|...+....    ...+ +.+++.++...     .+
T Consensus       115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~-----~~  184 (305)
T 2v9p_A          115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVLSFANHKSHFWLASLADTRAALVDDATH-----AC  184 (305)
T ss_dssp             HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEECGGGTTSGGGGGGGTTCSCEEEEEECH-----HH
T ss_pred             hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEEEEecCccccccccHHHHhhccCccccH-----HH
Confidence            689999999999999999999999999999999987     488865443221    1223 25666543110     23


Q ss_pred             HHHHHHHH--H-----c-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           77 TETLVFIA--L-----F-RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        77 ~e~l~f~~--~-----~-~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .+.+.-..  .     + +..+||   ||+|+.+|++|+    ||+||+.+...+.
T Consensus       185 ~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          185 WRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL  233 (305)
T ss_dssp             HHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred             HHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence            33332100  0     0 012367   999999999999    9999998887663

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.55  E-value=8.5e-18  Score=154.58  Aligned_cols=118  Identities=15%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|  -++++||+++|+||||||||||+|+|+|.++  ...+.+.+.+.+.....++.++|++|+...++.+|+.|++.
T Consensus        11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~   86 (207)
T 1znw_A           11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL   86 (207)
T ss_dssp             ----------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence            4566  6899999999999999999999999999875  33343333333222223456899999877666666655441


Q ss_pred             HH----H--H-cCCc-----------------hhHHHH-------HH---HHhhCCCEEEEeCCCCCC----CHHHHHHH
Q 048308           82 FI----A--L-FRLP-----------------IKRVSR-------AQ---ELLINPSLLFLDEPASGL----DSTIAKQI  123 (413)
Q Consensus        82 f~----~--~-~~~~-----------------~krvsi-------a~---~l~~~p~llllDEPtsgL----D~~~~~~i  123 (413)
                      ..    .  . .+.+                 .+++.+       ..   +|+.+|++++|||||+|+    |+..+.++
T Consensus        87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l  166 (207)
T 1znw_A           87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRL  166 (207)
T ss_dssp             EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            10    0  0 0000                 011111       11   466789999999999998    66677666

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.53  E-value=1.3e-14  Score=145.12  Aligned_cols=45  Identities=20%  Similarity=0.172  Sum_probs=38.2

Q ss_pred             hHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEec
Q 048308           91 KRVSRAQELL------INPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVG  135 (413)
Q Consensus        91 krvsia~~l~------~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~G  135 (413)
                      ||++||++|+      .+|++++|||||+|||+.++..++     +..+|++|..-
T Consensus       286 qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~i  341 (365)
T 3qf7_A          286 ALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI  341 (365)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEE
T ss_pred             HHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            8999999999      699999999999999999998884     33467776653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.51  E-value=6.1e-15  Score=150.85  Aligned_cols=142  Identities=14%  Similarity=0.132  Sum_probs=108.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc---ccCh---------hccccEEEEecC-C
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN---PLSR---------TVKRKTGFVAHS-N   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~---------~~~~~~~~v~q~-~   68 (413)
                      +|+++ +.+.+||.++|+||||||||||+++|+|..+  ...|.|.++|.   +..+         ..++.++|++|+ +
T Consensus       147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~  223 (438)
T 2dpy_A          147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV  223 (438)
T ss_dssp             HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred             EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence            68899 9999999999999999999999999999987  46799999998   3321         245679999995 6


Q ss_pred             ccCCCCCHHHHHHHHHHc-CC--c---------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hh---
Q 048308           69 VFYLHLTVTETLVFIALF-RL--P---------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LN---  126 (413)
Q Consensus        69 ~~~~~lTv~e~l~f~~~~-~~--~---------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll---  126 (413)
                      ..++.+||.+++.+.+.. +.  .               .||++||   +.+|++      |+|||+.+...+. ++   
T Consensus       224 ~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~  294 (438)
T 2dpy_A          224 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFAKLPALVERA  294 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence            677889999999876532 10  0               1788888   888887      9999999999884 22   


Q ss_pred             -c---C-Cc-----EEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          127 -S---E-GN-----SLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       127 -~---~-G~-----~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                       +   + |.     +|..            .+|+..  ...+|.++.+.+|..
T Consensus       295 ~~~~~~~GsiT~~~tVlv------------~tHdl~--~~iad~v~~l~dG~I  333 (438)
T 2dpy_A          295 GNGIHGGGSITAFYTVLT------------EGDDQQ--DPIADSARAILDGHI  333 (438)
T ss_dssp             SCCSTTSCEEEEEEEEEC------------SSSCSC--CHHHHHHHHHSSEEE
T ss_pred             HhccCCCCcccceeEEEE------------eCCCcc--chhhceEEEEeCcEE
Confidence             1   1 43     3333            345554  566899998888754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.51  E-value=2.9e-17  Score=152.68  Aligned_cols=116  Identities=17%  Similarity=0.063  Sum_probs=71.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCC-
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLT-   75 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lT-   75 (413)
                      -|+|||+++++|++++|+||||||||||+|+|+|.+ +    |+|.+ |.+...     ..++.++|++|+...++.++ 
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   85 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK   85 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence            378999999999999999999999999999999987 2    77777 554321     22456788888754443221 


Q ss_pred             ---------H--------HHHHHHHH-HcC----------CchhHHHH-----HHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           76 ---------V--------TETLVFIA-LFR----------LPIKRVSR-----AQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        76 ---------v--------~e~l~f~~-~~~----------~~~krvsi-----a~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                               +        ++.+.-.. ..+          ..++|+.+     +++++.+|++++|||||+++|..+...
T Consensus        86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~  165 (218)
T 1z6g_A           86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQ  165 (218)
T ss_dssp             TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHH
T ss_pred             ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence                     0        11111011 000          01267777     778888888889999999998876665


Q ss_pred             H
Q 048308          123 I  123 (413)
Q Consensus       123 i  123 (413)
                      +
T Consensus       166 i  166 (218)
T 1z6g_A          166 I  166 (218)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.49  E-value=2.6e-15  Score=141.56  Aligned_cols=118  Identities=16%  Similarity=0.158  Sum_probs=75.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|+|+|+++++|++++|+||||||||||+|+|+|.+      |.+.++      ..++.++|++|++ +++.+|++|++
T Consensus        13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~~   79 (245)
T 2jeo_A           13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVLTAEQKA   79 (245)
T ss_dssp             ----------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHHH
T ss_pred             eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-CccccCHhHhh
Confidence            3799999999999999999999999999999999865      222222      2356799999985 67789999988


Q ss_pred             HHHHHcC-C--ch------------------------------hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhc
Q 048308           81 VFIALFR-L--PI------------------------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNS  127 (413)
Q Consensus        81 ~f~~~~~-~--~~------------------------------krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~  127 (413)
                      .+..... .  +.                              +|+.+ ++++.+|+++++|||....|.....    + 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~----~-  153 (245)
T 2jeo_A           80 KALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRD----M-  153 (245)
T ss_dssp             HHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHT----T-
T ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHH----h-
Confidence            7643211 0  11                              23333 2456789999999999888865221    1 


Q ss_pred             CCcEEEecCc
Q 048308          128 EGNSLHVGKG  137 (413)
Q Consensus       128 ~G~~v~~G~~  137 (413)
                      .+.+++.-+.
T Consensus       154 ~~~~i~v~th  163 (245)
T 2jeo_A          154 FHLRLFVDTD  163 (245)
T ss_dssp             CSEEEEEECC
T ss_pred             cCeEEEEECC
Confidence            2666666443

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.47  E-value=2e-14  Score=141.20  Aligned_cols=44  Identities=27%  Similarity=0.183  Sum_probs=36.0

Q ss_pred             hHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEe
Q 048308           91 KRVSRAQELL----INPSLLFLDEPASGLDSTIAKQIL----LNSEGNSLHV  134 (413)
Q Consensus        91 krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~  134 (413)
                      ||+.||++|+    .+|++++|||||++||+..+..+.    -+.+|.++..
T Consensus       226 q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~  277 (322)
T 1e69_A          226 ALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIV  277 (322)
T ss_dssp             HHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             HHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence            8999999997    578999999999999999998884    1245665555

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.47  E-value=1.3e-15  Score=161.87  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=77.1

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC-------hhccccEEEEecCCccCCCCCHHHHHHHHHHc--
Q 048308           16 LAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVAHSNVFYLHLTVTETLVFIALF--   86 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~--   86 (413)
                      ++|+||||||||||+++|+|+..| ..+|.|.++|.++.       ..+++.++|++|+..+++.+||+|++.++...  
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~  126 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA  126 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999753 25799999998741       24566799999999999999999999886432  


Q ss_pred             ----CCchhHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHH
Q 048308           87 ----RLPIKRVSRAQELLINPSLLFLDEP------ASGLDSTIAKQI  123 (413)
Q Consensus        87 ----~~~~krvsia~~l~~~p~llllDEP------tsgLD~~~~~~i  123 (413)
                          +...+++.++.....+|+++++|||      |+|||+..+.++
T Consensus       127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i  173 (608)
T 3szr_A          127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKI  173 (608)
T ss_dssp             CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHH
T ss_pred             CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHH
Confidence                1122334444445568999999999      999999998777

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.47  E-value=2.2e-15  Score=140.35  Aligned_cols=121  Identities=17%  Similarity=0.142  Sum_probs=89.5

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCH----HHHHHHHH
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTV----TETLVFIA   84 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv----~e~l~f~~   84 (413)
                      ..++|++++|+||||||||||+|+|+|..++....|.|.+++.+..+..++.++|++|+...++.+|+    .|++.+..
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~   91 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG   91 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence            46899999999999999999999999987632478999998877654445678999998877777777    55554322


Q ss_pred             Hc-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEecCc
Q 048308           85 LF-RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVGKG  137 (413)
Q Consensus        85 ~~-~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G~~  137 (413)
                      .. +.+.   .-+.+++..+++++||     ||+..+.++. .+.+|.+|+.-++
T Consensus        92 ~~yg~~~---~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th  138 (219)
T 1s96_A           92 NYYGTSR---EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPP  138 (219)
T ss_dssp             EEEEEEH---HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred             ccCCCCH---HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECC
Confidence            21 1222   2345677889999999     9999999995 3447888887664

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.46  E-value=2.3e-14  Score=139.93  Aligned_cols=107  Identities=15%  Similarity=0.127  Sum_probs=85.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc--cccEEEEecCCccCCCCCHHHHHH
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV--KRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~--~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|++++|+||||||||||+++|+|.+++  ..|+|.++|.+...        .+  ++.+++++|+....|..|++|++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~  178 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ  178 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence            7999999999999999999999999874  46999999876531        11  346899999998889999999998


Q ss_pred             HHHHcCC---------------------chhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHH
Q 048308           82 FIALFRL---------------------PIKRVSRAQELLINPS--LLFLDEPASGLDSTIAK  121 (413)
Q Consensus        82 f~~~~~~---------------------~~krvsia~~l~~~p~--llllDEPtsgLD~~~~~  121 (413)
                      ++...+.                     .++|+.|||+++.+|+  ++.|| |++|.|.....
T Consensus       179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~  240 (304)
T 1rj9_A          179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQA  240 (304)
T ss_dssp             HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHH
T ss_pred             HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHH
Confidence            7643211                     1268999999999999  67788 78887765543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.45  E-value=3.8e-14  Score=141.20  Aligned_cols=109  Identities=19%  Similarity=0.233  Sum_probs=80.3

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRL   88 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~   88 (413)
                      ..++|++++|+||||||||||+++|+|.+++ ...|.|...+.+.....+...+++.|........+..+          
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~----------  187 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-TKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE----------  187 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH-HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccC-CCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH----------
Confidence            5688999999999999999999999998753 12466665555544333444567777665544555554          


Q ss_pred             chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEecC
Q 048308           89 PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVGK  136 (413)
Q Consensus        89 ~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G~  136 (413)
                           .||++|..+|+++++||||   |..+...++ ....|+++..-.
T Consensus       188 -----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~~G~~vl~t~  228 (356)
T 3jvv_A          188 -----ALRSALREDPDIILVGEMR---DLETIRLALTAAETGHLVFGTL  228 (356)
T ss_dssp             -----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEE
T ss_pred             -----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHhcCCEEEEEE
Confidence                 7889999999999999999   788776654 445788776543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.44  E-value=9.8e-16  Score=141.45  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTG-----ETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-----~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |-+++||+++|+||||||||||+++|+|...+.     ...|.+.+++.....  .+.++++.|+..+.+. |+.|++.+
T Consensus        20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~   96 (231)
T 4a74_A           20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-EVLKHIYV   96 (231)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence            679999999999999999999999999954321     134578888764211  1235566666555554 77777644


Q ss_pred             HHHcCCch--hHHHHHHHHhh-------CCCEEEEeCCCCCCCHH
Q 048308           83 IALFRLPI--KRVSRAQELLI-------NPSLLFLDEPASGLDST  118 (413)
Q Consensus        83 ~~~~~~~~--krvsia~~l~~-------~p~llllDEPtsgLD~~  118 (413)
                      ........  +.+..+.+++.       +|+++++||||+++|+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~  141 (231)
T 4a74_A           97 ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  141 (231)
T ss_dssp             EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred             EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence            22111111  23455556655       99999999999999983

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.43  E-value=7.7e-15  Score=129.85  Aligned_cols=76  Identities=21%  Similarity=0.205  Sum_probs=63.3

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++++|+++++||+++|+||||||||||+|+|+|.+ +  .+|+|.++|.++.+..... .+++|+..++ .+||.|++.
T Consensus        22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~-~~~~q~~~l~-~ltv~e~l~   96 (158)
T 1htw_A           22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA-GKMIYHFDLY-RLADPEELE   96 (158)
T ss_dssp             HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET-TEEEEEEECT-TCSCTTHHH
T ss_pred             HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC-Ccceeccccc-cCCcHHHHH
Confidence            578999999999999999999999999999999987 4  5699999998764322111 2788988778 899999986


Q ss_pred             H
Q 048308           82 F   82 (413)
Q Consensus        82 f   82 (413)
                      +
T Consensus        97 ~   97 (158)
T 1htw_A           97 F   97 (158)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.41  E-value=1.3e-13  Score=138.22  Aligned_cols=112  Identities=19%  Similarity=0.194  Sum_probs=82.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGET-RGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +|++++  +++|++++|+||||||||||+++|+|.+++  . +|.|...+.+.....++.+++|+|...-...       
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~-------  195 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDT-------  195 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEecccHhhhhccCceEEEeeecCCCH-------
Confidence            456665  789999999999999999999999998752  3 6999877766543345568899985311100       


Q ss_pred             HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcEEEec
Q 048308           81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNSEGNSLHVG  135 (413)
Q Consensus        81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~~G~~v~~G  135 (413)
                              ..-+.+|+++|..+|+++++|||+   |..+....+ ....|+.+..-
T Consensus       196 --------~~~~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~~~g~~vi~t  240 (372)
T 2ewv_A          196 --------KSFADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGT  240 (372)
T ss_dssp             --------SCSHHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHTTTCEEEEC
T ss_pred             --------HHHHHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHHhcCCEEEEE
Confidence                    012568899999999999999999   777765543 33468877553

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.39  E-value=1.1e-14  Score=157.96  Aligned_cols=121  Identities=18%  Similarity=0.160  Sum_probs=80.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+|+.   |++++|+||||||||||||+|+|.... ...|.+.       +..+..+++++|   +++.+++.|++.
T Consensus       568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v-------pa~~~~i~~v~~---i~~~~~~~d~l~  633 (765)
T 1ewq_A          568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV-------PAEEAHLPLFDG---IYTRIGASDDLA  633 (765)
T ss_dssp             CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB-------SSSEEEECCCSE---EEEECCC-----
T ss_pred             EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee-------ehhccceeeHHH---hhccCCHHHHHH
Confidence            67899998   999999999999999999999997421 1123321       112334677766   567889999986


Q ss_pred             HHHHcCCchhHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHH--HhcCCcEEEecCc
Q 048308           82 FIALFRLPIKRVSRAQEL--LINPSLLFLDEP---ASGLDSTIA-KQIL--LNSEGNSLHVGKG  137 (413)
Q Consensus        82 f~~~~~~~~krvsia~~l--~~~p~llllDEP---tsgLD~~~~-~~i~--ll~~G~~v~~G~~  137 (413)
                      ..... ...+++.+++++  +++|++++||||   |++||..+. ..++  +.+.|.++.+-+.
T Consensus       634 ~g~S~-~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH  696 (765)
T 1ewq_A          634 GGKST-FMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATH  696 (765)
T ss_dssp             -CCSH-HHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             hcccH-HHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            42110 113678888888  999999999999   999998764 3442  3345665555443

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.39  E-value=2e-13  Score=152.40  Aligned_cols=113  Identities=18%  Similarity=0.197  Sum_probs=75.4

Q ss_pred             ccccceeEEec-------CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC------
Q 048308            2 ILKGIRGVSSL-------GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN------   68 (413)
Q Consensus         2 iL~~vs~~~~~-------Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~------   68 (413)
                      +++|+++.+++       |++++|+||||||||||||++ |+...                 ..+..+||+|+.      
T Consensus       771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------------~aqiG~~Vpq~~~~l~v~  832 (1022)
T 2o8b_B          771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------------MAQMGCYVPAEVCRLTPI  832 (1022)
T ss_dssp             CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------------HHTTTCCEESSEEEECCC
T ss_pred             EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------------HhheeEEeccCcCCCCHH
Confidence            78999999987       999999999999999999999 87531                 011122555542      


Q ss_pred             -ccCCCCCHHHHH-----HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH----H--HhcC-CcEEEec
Q 048308           69 -VFYLHLTVTETL-----VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----L--LNSE-GNSLHVG  135 (413)
Q Consensus        69 -~~~~~lTv~e~l-----~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i----~--ll~~-G~~v~~G  135 (413)
                       .++..+...+.+     .|...    .+++++|++++++|++++||||++|+|+.....+    +  +..+ |..+.+-
T Consensus       833 d~I~~rig~~d~~~~~~stf~~e----m~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~  908 (1022)
T 2o8b_B          833 DRVFTRLGASDRIMSGESTFFVE----LSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS  908 (1022)
T ss_dssp             SBEEEECC---------CHHHHH----HHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             HHHHHHcCCHHHHhhchhhhHHH----HHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence             111122222222     12211    2679999999999999999999999998875332    1  3444 7655554


Q ss_pred             C
Q 048308          136 K  136 (413)
Q Consensus       136 ~  136 (413)
                      +
T Consensus       909 T  909 (1022)
T 2o8b_B          909 T  909 (1022)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.37  E-value=8.3e-14  Score=126.78  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=83.0

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCC---------------
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLT---------------   75 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lT---------------   75 (413)
                      ||+++|+||||||||||+++|+|.++   .+| |.++|....+  ..++.++|++|+..  ...+               
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~~~l~~~~~~~~~~~~~   74 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTRGPLSRVGLEPPPGKRE   74 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCEEEEEECCCCCCSSSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cceehhhcccccCCccccc
Confidence            78999999999999999999999875   347 8777765532  34667899998731  1000               


Q ss_pred             --HHH---HHHHHHHcCCch-hHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHH-HhcCCcEEEecCcchHhHHHHh
Q 048308           76 --VTE---TLVFIALFRLPI-KRVSRAQELLINPSLLFLDE--PASGLDSTIAKQIL-LNSEGNSLHVGKGDGVMSYFVG  146 (413)
Q Consensus        76 --v~e---~l~f~~~~~~~~-krvsia~~l~~~p~llllDE--PtsgLD~~~~~~i~-ll~~G~~v~~G~~~~~~~~f~~  146 (413)
                        +.+   .+.-..+.++.. +++  |+|+..+|+++++||  |+..+|......+. ++++.+.+-.|..        .
T Consensus        75 ~~v~~~~~~ls~~er~~~~~l~~~--a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti--------~  144 (189)
T 2i3b_A           75 CRVGQYVVDLTSFEQLALPVLRNA--DCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTI--------P  144 (189)
T ss_dssp             EESSSSEECHHHHHTTTTTTTCCC--CCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEEC--------C
T ss_pred             cccceEEEcchHHHHHHHHHHhhh--hHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEe--------e
Confidence              000   000000001000 111  125688999999999  89999998877774 4444433333221        0


Q ss_pred             cCCCCCCCCChhHHHHHhhCCccC
Q 048308          147 IGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       147 ~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +.|+.+  ....|.+....++++.
T Consensus       145 vsh~~~--~~~vd~i~~~~~~~i~  166 (189)
T 2i3b_A          145 VPKGKP--LALVEEIRNRKDVKVF  166 (189)
T ss_dssp             CCCSSC--CTTHHHHHTTCCSEEE
T ss_pred             cCCCCc--hHHHHHHeecCCcEEE
Confidence            113322  2456777666665544

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.36  E-value=5.8e-13  Score=146.77  Aligned_cols=124  Identities=10%  Similarity=0.055  Sum_probs=73.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+|+.+++|++++|+||||||||||||++++.... ...|      .....    ..+.+..-+.++..+.+.+++.
T Consensus       662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g------~~vpa----~~~~i~~~d~i~~~ig~~d~l~  730 (918)
T 3thx_B          662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIG------SYVPA----EEATIGIVDGIFTRMGAADNIY  730 (918)
T ss_dssp             CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHT------CCBSS----SEEEEECCSEEEEEC-------
T ss_pred             ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcC------ccccc----hhhhhhHHHHHHHhCChHHHHH
Confidence            78899999999999999999999999999999754210 0001      00000    0111222233444555566553


Q ss_pred             HHHHc--CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH------Hhc-CCcEEEecCc
Q 048308           82 FIALF--RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL------LNS-EGNSLHVGKG  137 (413)
Q Consensus        82 f~~~~--~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~------ll~-~G~~v~~G~~  137 (413)
                      .....  .--.+++.++++ +++|++++|||||+|||+.....+.      +.. .|.++.+-+.
T Consensus       731 ~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH  794 (918)
T 3thx_B          731 KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH  794 (918)
T ss_dssp             ---CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            21100  001256666665 8999999999999999999887763      223 4766665554

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.34  E-value=7.4e-13  Score=132.15  Aligned_cols=109  Identities=18%  Similarity=0.191  Sum_probs=77.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-Ch-hccccEEEEe-cCCcc--CCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-SR-TVKRKTGFVA-HSNVF--YLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-~~-~~~~~~~~v~-q~~~~--~~~lTv   76 (413)
                      +++++|+.+++|++++|+||||||||||+|+|+|.+++  .+|.|.++|... .. ..++.+++++ |++..  ++..|+
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~  241 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA  241 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence            34899999999999999999999999999999999874  579999998532 11 2456789998 76543  356777


Q ss_pred             HHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCc
Q 048308           77 TETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGN  130 (413)
Q Consensus        77 ~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~  130 (413)
                      ++++..               ++..+|+.+++||+..   ......+.-+..|+
T Consensus       242 ~~~i~~---------------~l~~~pd~~l~~e~r~---~~~~~~l~~l~~g~  277 (361)
T 2gza_A          242 ATLLRS---------------CLRMKPTRILLAELRG---GEAYDFINVAASGH  277 (361)
T ss_dssp             HHHHHH---------------HTTSCCSEEEESCCCS---THHHHHHHHHHTTC
T ss_pred             HHHHHH---------------HHhcCCCEEEEcCchH---HHHHHHHHHHhcCC
Confidence            777754               4456899999999985   23333333455664

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.34  E-value=1e-12  Score=145.10  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=65.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHH--------hCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTL--------GGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~   73 (413)
                      +++|+++.+++|++++|+||||||||||||++        .|..-+  .++..              ++   .-+.++..
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~--------------~~---~~d~i~~~  711 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAE--------------VS---IVDCILAR  711 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEE--------------EE---CCSEEEEE
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--ccccc--------------ch---HHHHHHHh
Confidence            67899999999999999999999999999999        554332  12211              00   00111112


Q ss_pred             CCHHHHHHHHHHcCCchhHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           74 LTVTETLVFIALFRLPIKRVSRAQEL--LINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        74 lTv~e~l~f~~~~~~~~krvsia~~l--~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +...+++.-. .-....++..+|+.+  +++|++++|||||+|+|+.....+
T Consensus       712 ig~~d~l~~~-lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i  762 (934)
T 3thx_A          712 VGAGDSQLKG-VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGL  762 (934)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHH
T ss_pred             cCchhhHHHh-HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHH
Confidence            2222222110 000112566666666  899999999999999999887666

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.33  E-value=9.3e-14  Score=141.13  Aligned_cols=130  Identities=15%  Similarity=0.070  Sum_probs=76.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+|+.+      +|+|+||||||||+|+|+|...+....|.+..++.+  ....+.++++.|++.+++.+||.||+.
T Consensus        26 vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g   97 (418)
T 2qag_C           26 VKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTIVDTPG   97 (418)
T ss_dssp             CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCEEEEEECC------CEEEEEEECC-
T ss_pred             EecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--ceeeeeEEEEEecCCcccceeeeechh
Confidence            688999987      999999999999999999986521212222222111  112345788888887777888888876


Q ss_pred             HHHHcCC------------------chhHHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHhcC-CcEEEecCcc
Q 048308           82 FIALFRL------------------PIKRVSRAQELLINPS---LLFLDEPA-SGLDSTIAKQILLNSE-GNSLHVGKGD  138 (413)
Q Consensus        82 f~~~~~~------------------~~krvsia~~l~~~p~---llllDEPt-sgLD~~~~~~i~ll~~-G~~v~~G~~~  138 (413)
                      +......                  -.+|+.||++++.+|+   ++++|||| .|||+....-+--+.+ ..+|..+...
T Consensus        98 ~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~  177 (418)
T 2qag_C           98 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKA  177 (418)
T ss_dssp             ----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEEST
T ss_pred             hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcc
Confidence            6432210                  0145668899999999   99999999 6999887544433443 4566666644


Q ss_pred             h
Q 048308          139 G  139 (413)
Q Consensus       139 ~  139 (413)
                      +
T Consensus       178 D  178 (418)
T 2qag_C          178 D  178 (418)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.33  E-value=2.1e-14  Score=142.80  Aligned_cols=109  Identities=19%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCe----eEE-EEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGET----RGN-IDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~----~G~-i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|.+++|++++|+||||||||||++.+++.....+.    .|. |++++....  .++.++++.|...+.+. ++.|++.
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~v~~ni~  201 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIY  201 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-HHGGGEE
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-HHhhCEE
Confidence            688999999999999999999999999997632122    367 888886541  13346677777655544 6666654


Q ss_pred             HHHHcC--CchhHHHHHHHHh-------hCCCEEEEeCCCCCCCHH
Q 048308           82 FIALFR--LPIKRVSRAQELL-------INPSLLFLDEPASGLDST  118 (413)
Q Consensus        82 f~~~~~--~~~krvsia~~l~-------~~p~llllDEPtsgLD~~  118 (413)
                      +.....  ...+++.++++++       .+|+++++||||+++|+.
T Consensus       202 ~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~  247 (349)
T 1pzn_A          202 VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  247 (349)
T ss_dssp             EEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence            421110  0126788888988       689999999999999985

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.33  E-value=1.7e-13  Score=141.06  Aligned_cols=116  Identities=12%  Similarity=0.111  Sum_probs=87.2

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------h--ccccEEEEecCCccCCC
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------T--VKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~--~~~~~~~v~q~~~~~~~   73 (413)
                      +++|+.+++|++++|+|+||||||||+++|+|++.+  ..|+|.++|.+...        .  .++.++|++|+....+.
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~  361 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA  361 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence            689999999999999999999999999999998763  46999997654321        1  24568999999888889


Q ss_pred             CCHHHHHHHHHHcCCc-----------h---------hHHHHHHHHh-hCC-CEEEEeCCCCCCCHHHHH
Q 048308           74 LTVTETLVFIALFRLP-----------I---------KRVSRAQELL-INP-SLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        74 lTv~e~l~f~~~~~~~-----------~---------krvsia~~l~-~~p-~llllDEPtsgLD~~~~~  121 (413)
                      +||++++.++..-+..           .         |++.+++.+. ..| .+++..++|+|.|.....
T Consensus       362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a  431 (503)
T 2yhs_A          362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA  431 (503)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH
Confidence            9999999987543211           0         4556666543 446 466666699998776543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.33  E-value=2.1e-13  Score=148.70  Aligned_cols=123  Identities=14%  Similarity=0.084  Sum_probs=75.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +++|+|+. ++|++++|+||||||||||||+|+|...... .      |..... .+..++++.|   +++.+++.|++.
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-~------G~~vpa-~~~~i~~~~~---i~~~~~~~d~l~  664 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-I------GSYVPA-QKVEIGPIDR---IFTRVGAADDLA  664 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-T------TCCBSS-SEEEECCCCE---EEEEEC------
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-c------Ccccch-hcccceeHHH---HHhhCCHHHHHH
Confidence            68999999 9999999999999999999999998632100 1      111111 1223555544   567778888876


Q ss_pred             HHHHcC-CchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH----H--Hhc-CCcEEEecC
Q 048308           82 FIALFR-LPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI----L--LNS-EGNSLHVGK  136 (413)
Q Consensus        82 f~~~~~-~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i----~--ll~-~G~~v~~G~  136 (413)
                      .....- ...+++..+...+++|++++||||++|+|+.....+    +  +.+ .|..+.+-+
T Consensus       665 ~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~T  727 (800)
T 1wb9_A          665 SGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT  727 (800)
T ss_dssp             -----CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             hhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEe
Confidence            432110 112455555566899999999999999998665554    1  334 366655544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.31  E-value=1.3e-14  Score=132.98  Aligned_cols=94  Identities=18%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccC--CCCCHHHHHHHHHH--
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFY--LHLTVTETLVFIAL--   85 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~f~~~--   85 (413)
                      .++|++++|+||||||||||+|+|+|++.+                    .++|++|++.++  ..+|++++..+...  
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~   62 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP   62 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCCCh
Confidence            579999999999999999999999997641                    478899988776  56788776543210  


Q ss_pred             --------------cCC------------------chhHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHH
Q 048308           86 --------------FRL------------------PIKRVSRAQELLINPSLLFLDEPASG-------LDSTIAKQI  123 (413)
Q Consensus        86 --------------~~~------------------~~krvsia~~l~~~p~llllDEPtsg-------LD~~~~~~i  123 (413)
                                    +++                  ..+|+.++++++.+|+++++||||++       ||+....++
T Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~  139 (211)
T 3asz_A           63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERF  139 (211)
T ss_dssp             GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred             hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHH
Confidence                          000                  01356778888899999999999999       887766655

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.31  E-value=2.2e-14  Score=150.04  Aligned_cols=132  Identities=15%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             Ccccccee-EEecCcEEEEECCCCCCHHHHHHH--HhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCC-
Q 048308            1 MILKGIRG-VSSLGELLAILGPSGRGKTTLPTT--LGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLH-   73 (413)
Q Consensus         1 ~iL~~vs~-~~~~Ge~~~ilG~sGsGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~-   73 (413)
                      ++|+|||+ .+++||+++|+||||||||||+++  ++|..++  .+|.|.++|.+...   ...+.+|+++|+....++ 
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l  103 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL  103 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcE
Confidence            36899999 999999999999999999999999  6888753  46999999987432   223457888887432110 


Q ss_pred             --CCHHH---HHHHHHHcCCchhHHHHHHHHh-hCCCEEEEeCCCC-----CCCHHHHHHHH-----HhcCCcEEEe
Q 048308           74 --LTVTE---TLVFIALFRLPIKRVSRAQELL-INPSLLFLDEPAS-----GLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        74 --lTv~e---~l~f~~~~~~~~krvsia~~l~-~~p~llllDEPts-----gLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                        +++.+   .......+.+......+..+|. .+|+++++||||+     +||+..+.++.     +-.+|.++..
T Consensus       104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~  180 (525)
T 1tf7_A          104 FILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM  180 (525)
T ss_dssp             EEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             EEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence              11100   0000000001113334555664 7999999999998     46888887773     2235766655

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.28  E-value=3.8e-13  Score=129.93  Aligned_cols=110  Identities=12%  Similarity=-0.007  Sum_probs=64.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEEECCcccCh-hccccEEEEecCCcc--CCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NIDYNNNPLSR-TVKRKTGFVAHSNVF--YLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~-~~~~~~~~v~q~~~~--~~~lTv~   77 (413)
                      +|+++++.+++|++++|+||||||||||++.|+|...+  .+| .|.+.+.+.+. ...+.+..+.++..+  ++.++..
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~  101 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKRE  101 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccC
Confidence            68999999999999999999999999999999998652  235 56544333322 222222222222211  1111111


Q ss_pred             -----H---HHHHHH-HcC-----C-c-------hhHHHHHHHHhhCCCEEEEeCCCCC
Q 048308           78 -----E---TLVFIA-LFR-----L-P-------IKRVSRAQELLINPSLLFLDEPASG  114 (413)
Q Consensus        78 -----e---~l~f~~-~~~-----~-~-------~krvsia~~l~~~p~llllDEPtsg  114 (413)
                           +   ...-.. ..+     . .       .+|+. |+++..+|+++++||||+.
T Consensus       102 ~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~  159 (296)
T 1cr0_A          102 IIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV  159 (296)
T ss_dssp             HHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred             CCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence                 0   000000 001     1 0       14555 7789999999999999993

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.25  E-value=1.8e-11  Score=122.01  Aligned_cols=33  Identities=27%  Similarity=0.130  Sum_probs=30.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      .++++++.+++| +++|+||||||||||+++|++
T Consensus        16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            467899999999 999999999999999999986

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.23  E-value=2.9e-13  Score=132.14  Aligned_cols=106  Identities=14%  Similarity=0.244  Sum_probs=78.2

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFR   87 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~   87 (413)
                      ++|++++|+||||||||||+++|+|.+...+.+|+|.+   +|.......++.++++ |+..+++.+|+.+++.+...+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~  156 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK  156 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence            89999999999999999999999997651125688988   8876544334457788 7777788999999998876553


Q ss_pred             Cch-------------hHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           88 LPI-------------KRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        88 ~~~-------------krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      ...             +|+..+.+.+.+|+++++|.|....|.
T Consensus       157 ~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~  199 (308)
T 1sq5_A          157 SGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSG  199 (308)
T ss_dssp             TTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred             CCCCceecccccccccCcccccceecCCCCEEEECchhhCCCc
Confidence            211             233222233467899999999988773

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.23  E-value=2.6e-13  Score=127.74  Aligned_cols=111  Identities=18%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHH---
Q 048308           12 LGELLAILGPSGRGKTTLPTTLG---GRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIAL---   85 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~---   85 (413)
                      ++++++|+||||||||||+++|+   |...  ...|+|.++|.+......+.+.++.|+..+++..|+.|++.....   
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            57999999999999999999999   8865  356888777654322222334455666677777888888865431   


Q ss_pred             -----c-CCchh-----HH------------------HHHH--------------HH-hhCCCEEEEe----CCCCCCCH
Q 048308           86 -----F-RLPIK-----RV------------------SRAQ--------------EL-LINPSLLFLD----EPASGLDS  117 (413)
Q Consensus        86 -----~-~~~~k-----rv------------------sia~--------------~l-~~~p~llllD----EPtsgLD~  117 (413)
                           + +.+..     .+                  .+.+              ++ +.+|+++++|    |||+|||.
T Consensus       104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~  183 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED  183 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred             CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence                 1 11110     00                  0222              22 7899999999    99999999


Q ss_pred             HHHHHHH
Q 048308          118 TIAKQIL  124 (413)
Q Consensus       118 ~~~~~i~  124 (413)
                      .+...+.
T Consensus       184 ~~~~~i~  190 (246)
T 2bbw_A          184 DKPEAVA  190 (246)
T ss_dssp             GSHHHHH
T ss_pred             CcHHHHH
Confidence            8877763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.23  E-value=2.4e-12  Score=125.26  Aligned_cols=122  Identities=21%  Similarity=0.172  Sum_probs=59.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEEEECCcccChh-ccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR-LSTGETRGNIDYNNNPLSRT-VKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~-~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +++|+++++      +|+||||||||||+|+|.|. ..  +.+| +.++|.+.... ..+.+++++|++.....+|+.|+
T Consensus        13 ~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt   83 (301)
T 2qnr_A           13 VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDT   83 (301)
T ss_dssp             -----CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEEEEE
T ss_pred             EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhh
Confidence            688999988      99999999999999999997 44  3567 77777665432 13457888888777777777777


Q ss_pred             HHHHHHcC-------------------------CchhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHhcCC-cEE
Q 048308           80 LVFIALFR-------------------------LPIKRVSRAQELLINPSLLFLDEPAS-GLDSTIAKQILLNSEG-NSL  132 (413)
Q Consensus        80 l~f~~~~~-------------------------~~~krvsia~~l~~~p~llllDEPts-gLD~~~~~~i~ll~~G-~~v  132 (413)
                      ..+.....                         ..+||+.+|++++    ++++||||+ |||+.....+--+.++ .++
T Consensus        84 ~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~ii  159 (301)
T 2qnr_A           84 PGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIV  159 (301)
T ss_dssp             C-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEE
T ss_pred             hhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEE
Confidence            66532211                         0012322222221    999999998 5999875433333332 344


Q ss_pred             EecC
Q 048308          133 HVGK  136 (413)
Q Consensus       133 ~~G~  136 (413)
                      -.+.
T Consensus       160 lV~~  163 (301)
T 2qnr_A          160 PVIA  163 (301)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            4444

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.22  E-value=6.3e-12  Score=124.77  Aligned_cols=142  Identities=18%  Similarity=0.192  Sum_probs=94.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----------hccccEEEEecCCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------TVKRKTGFVAHSNVF   70 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~v~q~~~~   70 (413)
                      +|+++ +.+.+||+++|+||||||||||+++|+|..++  ..|.|.+.|++..+           ..++.+.++.|.+.-
T Consensus        61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~  137 (347)
T 2obl_A           61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRP  137 (347)
T ss_dssp             HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSC
T ss_pred             EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCC
Confidence            68899 99999999999999999999999999999874  57999888864211           134457788875421


Q ss_pred             -CCCCCHHHHHHHHH-HcCC-----------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-Hhc---
Q 048308           71 -YLHLTVTETLVFIA-LFRL-----------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-LNS---  127 (413)
Q Consensus        71 -~~~lTv~e~l~f~~-~~~~-----------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-ll~---  127 (413)
                       ...+++.++....+ .++-                 ..||+++|   +.+|++      |+|||+....++. ++.   
T Consensus       138 ~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~  208 (347)
T 2obl_A          138 ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAG  208 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHh
Confidence             11222223222111 1110                 01677777   577776      9999999998884 221   


Q ss_pred             ---CCc-----EEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCcc
Q 048308          128 ---EGN-----SLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVV  169 (413)
Q Consensus       128 ---~G~-----~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~  169 (413)
                         +|.     +|..            .+|+..  ...+|.+..+.+|+.
T Consensus       209 ~~~~GsiT~~~tVl~------------~thdl~--~~i~d~v~~i~dG~I  244 (347)
T 2obl_A          209 PAPKGSITAIYTVLL------------ESDNVN--DPIGDEVRSILDGHI  244 (347)
T ss_dssp             ECSSSEEEEEEEEEC------------CSSCCC--CHHHHHHHHHCSEEE
T ss_pred             CCCCCCeeeEEEEEE------------eCCCCC--ChhhhheEEeeCcEE
Confidence               244     3332            245554  466999999888764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.21  E-value=3.4e-12  Score=125.75  Aligned_cols=110  Identities=14%  Similarity=0.024  Sum_probs=82.4

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hcc--ccEEEEecCCccCCCCCHHHH
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVK--RKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~--~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      .++|++++|+||||||||||++.|+|.++  +..|+|.++|.+...        .+.  ..+.+++|+..+.|.+||+|+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~  203 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA  203 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence            36899999999999999999999999876  356899999876531        112  236699999999999999999


Q ss_pred             HHHHHHcCCc-----------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           80 LVFIALFRLP-----------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        80 l~f~~~~~~~-----------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                      +.++...+..                 .+--.+++++..++.++.|| +++|.|.....+
T Consensus       204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLD-a~t~~~~~~~~~  262 (328)
T 3e70_C          204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGD-ALAGNAIVEQAR  262 (328)
T ss_dssp             HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHHHHH
T ss_pred             HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEe-cHHHHHHHHHHH
Confidence            9887542211                 02234788888888999999 455666655443

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.19  E-value=3.2e-11  Score=119.12  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           92 RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        92 rvsia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      |+.+|++|+.+|++++|||||+|||+..+..++     +..+|.++..
T Consensus       262 ~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~  309 (339)
T 3qkt_A          262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL  309 (339)
T ss_dssp             HHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            678888899999999999999999999998873     2345666555

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.17  E-value=1.3e-12  Score=132.62  Aligned_cols=128  Identities=16%  Similarity=0.118  Sum_probs=82.8

Q ss_pred             cccceeEEecCcE--EEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            3 LKGIRGVSSLGEL--LAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         3 L~~vs~~~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      |+|+|+.+++|++  ++|+||||||||||+|+|+|..-    .|.-. .... ....++.++|++|+..+++.+||.||+
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~ltv~D~~  103 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLTIVSTV  103 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccchhhhh
Confidence            7899999999999  99999999999999999999842    12111 0000 112234689999987766555555443


Q ss_pred             HHH------------------------HHc-CC-------c-------------------hhHHHHHHHHhhCCCEEEEe
Q 048308           81 VFI------------------------ALF-RL-------P-------------------IKRVSRAQELLINPSLLFLD  109 (413)
Q Consensus        81 ~f~------------------------~~~-~~-------~-------------------~krvsia~~l~~~p~llllD  109 (413)
                      .|.                        ... +.       +                   ..-+.++++|..+++++++|
T Consensus       104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi  183 (427)
T 2qag_B          104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPII  183 (427)
T ss_dssp             CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEE
T ss_pred             hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEE
Confidence            221                        011 10       0                   02367888888899999999


Q ss_pred             CCCCCCCHHHHHHHH------HhcCCcEEEecC
Q 048308          110 EPASGLDSTIAKQIL------LNSEGNSLHVGK  136 (413)
Q Consensus       110 EPtsgLD~~~~~~i~------ll~~G~~v~~G~  136 (413)
                      ||+..|.......+.      +-.+|..||+=+
T Consensus       184 ~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is  216 (427)
T 2qag_B          184 AKADAISKSELTKFKIKITSELVSNGVQIYQFP  216 (427)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred             cchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence            999999887765551      334676666544

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.14  E-value=2.2e-13  Score=135.96  Aligned_cols=117  Identities=16%  Similarity=0.084  Sum_probs=72.7

Q ss_pred             cccceeEEec--CcEEEEECCCCCCHHHHHHHHhCCCCCCCee----EEEEEC----CcccC---hhccccEEEEecCCc
Q 048308            3 LKGIRGVSSL--GELLAILGPSGRGKTTLPTTLGGRLSTGETR----GNIDYN----NNPLS---RTVKRKTGFVAHSNV   69 (413)
Q Consensus         3 L~~vs~~~~~--Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~----G~i~~~----g~~~~---~~~~~~~~~v~q~~~   69 (413)
                      .+.|+..+++  |+.++|+||||||||||+|+|+|++++  ..    |.+.++    |.+..   +.. +.+++++|+..
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~  234 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI  234 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence            4678999999  999999999999999999999999874  55    777663    33221   112 33666666533


Q ss_pred             cCCCCCHHHHHHHH----------HHcCCchhHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHHH
Q 048308           70 FYLHLTVTETLVFI----------ALFRLPIKRVSRAQELL-INPSLLFLDE---PA------SGLDSTIAKQI  123 (413)
Q Consensus        70 ~~~~lTv~e~l~f~----------~~~~~~~krvsia~~l~-~~p~llllDE---Pt------sgLD~~~~~~i  123 (413)
                      .+ ..|+.||+.+.          .......+|..+++.+. .+|++++|||   |+      .++|...+..+
T Consensus       235 ~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l  307 (365)
T 1lw7_A          235 DY-AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF  307 (365)
T ss_dssp             HH-HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred             HH-HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence            22 22333333210          00111124566666554 5999999999   65      58898877776

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.13  E-value=8.1e-12  Score=112.12  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh--ccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--VKRKTGFVAHSNVFYLHLTVTETLVFIALF   86 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~   86 (413)
                      .+++|++++|+||||||||||+++|+|..    ..|.|.++|.+....  .++.++|++|+..  ++.||.|++.+.+..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~   78 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR   78 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence            46899999999999999999999999983    358899998764321  1234567777543  467888888664311


Q ss_pred             -------------------------CCc--------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           87 -------------------------RLP--------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        87 -------------------------~~~--------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                                               ..+        .+|+.++|++..+|+++        +|+.....+
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~  140 (191)
T 1zp6_A           79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL  140 (191)
T ss_dssp             HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred             HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence                                     000        16888888888888765        576655544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.12  E-value=1.4e-11  Score=128.81  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=74.5

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE--EEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN--IDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA   84 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~--i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~   84 (413)
                      +|.+++|++++|+||||||||||+++++|...+   .|+  +.+.+++.........    .  .  ..+++.+..... 
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~~vi~~~~ee~~~~l~~~~----~--~--~g~~~~~~~~~g-  342 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKERAILFAYEESRAQLLRNA----Y--S--WGMDFEEMERQN-  342 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEESSSCHHHHHHHH----H--T--TSCCHHHHHHTT-
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHHHHHH----H--H--cCCCHHHHHhCC-
Confidence            678999999999999999999999999997643   132  4444433211111100    0  0  122344422110 


Q ss_pred             HcC--------C---chhHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHH-----HhcCCcEEEe
Q 048308           85 LFR--------L---PIKRVSRAQELLINPSLLFLDEPASGLDST-----IAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        85 ~~~--------~---~~krvsia~~l~~~p~llllDEPtsgLD~~-----~~~~i~-----ll~~G~~v~~  134 (413)
                      .+.        +   ..+|+.+|+++..+|+++++| ||+|||..     .+..+.     +-..|.++..
T Consensus       343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvil  412 (525)
T 1tf7_A          343 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLF  412 (525)
T ss_dssp             SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEE
Confidence            010        0   138999999999999999999 99999998     776652     2346766554

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.09  E-value=1e-10  Score=121.88  Aligned_cols=46  Identities=17%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHH----HhcCCcEEEecC
Q 048308           91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQIL----LNSEGNSLHVGK  136 (413)
Q Consensus        91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i~----ll~~G~~v~~G~  136 (413)
                      ||+.||++|+.+|  ++|+|||||+|||..++..+.    -+.+|.+|..-+
T Consensus       404 qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~it  455 (517)
T 4ad8_A          404 SRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVT  455 (517)
T ss_dssp             HHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            7999999999999  999999999999999998883    123477666643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.05  E-value=3.8e-11  Score=110.32  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=38.2

Q ss_pred             cccccee-EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            2 ILKGIRG-VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         2 iL~~vs~-~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      .|+++.+ .+++|++++|+||||||||||++.|++...  +..|.+.+.+.+
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~   60 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTE   60 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESS
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcc
Confidence            3677774 899999999999999999999999998654  233566655443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.01  E-value=2e-10  Score=125.56  Aligned_cols=33  Identities=30%  Similarity=0.496  Sum_probs=30.9

Q ss_pred             hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308           91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i  123 (413)
                      ||+.||++|..+|  .+++|||||+|||+.....+
T Consensus       386 QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L  420 (842)
T 2vf7_A          386 QRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL  420 (842)
T ss_dssp             HHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH
T ss_pred             HHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH
Confidence            8999999999999  59999999999999988776

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.00  E-value=6.6e-10  Score=101.44  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             cccce-eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-C-hhccccEEEEecCCccCCCCCHHHH
Q 048308            3 LKGIR-GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-S-RTVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         3 L~~vs-~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-~-~~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      |+++. |-+++|++++|.||||||||||++.+++  .  ...+.+.++.... . ....+.    .+..    .+...+.
T Consensus         9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~~----~~~~----~~~~~~~   76 (220)
T 2cvh_A            9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQM----AETR----GLNPEEA   76 (220)
T ss_dssp             HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHHH----HHTT----TCCHHHH
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHHH----HHhc----CCChHHH
Confidence            45554 5799999999999999999999999998  2  1234555655431 1 111110    0100    1111111


Q ss_pred             HH---HHHHcCCc--hhHHHHHHHHhhC-CCEEEEeCCCCCCCHH
Q 048308           80 LV---FIALFRLP--IKRVSRAQELLIN-PSLLFLDEPASGLDST  118 (413)
Q Consensus        80 l~---f~~~~~~~--~krvsia~~l~~~-p~llllDEPtsgLD~~  118 (413)
                      +.   +.......  .+++..+++++.+ |+++++||||+++|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~  121 (220)
T 2cvh_A           77 LSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE  121 (220)
T ss_dssp             HHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred             hhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence            10   00000111  2467788888875 9999999999999973

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.00  E-value=9.9e-11  Score=106.17  Aligned_cols=118  Identities=17%  Similarity=0.127  Sum_probs=67.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC-C--CCeeEEEE------ECC-cccC---------------hh
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS-T--GETRGNID------YNN-NPLS---------------RT   56 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~-~--~~~~G~i~------~~g-~~~~---------------~~   56 (413)
                      ++++  +.+++|+.++|+|+||||||||+|.|+|... .  .+..|.+.      +++ ..+.               +.
T Consensus        17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   94 (210)
T 1pui_A           17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRK   94 (210)
T ss_dssp             SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHH
T ss_pred             CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHH
Confidence            4566  7889999999999999999999999999761 0  12334332      221 1000               00


Q ss_pred             cc----------c---cEEEEecCCccCCCCCHH--HHHHHHHHcCCch---------------hH-HHHHHHHhhCCCE
Q 048308           57 VK----------R---KTGFVAHSNVFYLHLTVT--ETLVFIALFRLPI---------------KR-VSRAQELLINPSL  105 (413)
Q Consensus        57 ~~----------~---~~~~v~q~~~~~~~lTv~--e~l~f~~~~~~~~---------------kr-vsia~~l~~~p~l  105 (413)
                      ++          +   .+.++..  .-.+ .+-.  +........+.|.               +| +..+++++.+|+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~d--~~~~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A           95 WQRALGEYLEKRQSLQGLVVLMD--IRHP-LKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEE--TTSC-CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHhhhcccEEEEEEE--CCCC-CchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            01          1   1122222  1111 1221  2222223333321               34 7889999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHH
Q 048308          106 LFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus       106 lllDEPtsgLD~~~~~~i~  124 (413)
                      +++|||||++|.....++.
T Consensus       172 ~~~~~~~Sal~~~~~~~l~  190 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLR  190 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHH
T ss_pred             CCceEEEeecCCCCHHHHH
Confidence            9999999999998887773

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.98  E-value=1.5e-10  Score=100.99  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=25.5

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +|+.++|+||||+|||||++++++...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999999999764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.96  E-value=1.1e-10  Score=104.18  Aligned_cols=88  Identities=19%  Similarity=0.207  Sum_probs=56.5

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH--
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA--   84 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~--   84 (413)
                      ++.+++|+.++|.||||+|||||++++++...+  .+|.              .+.|          +++.|.+....  
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~~g~--------------~~~~----------~~~~~~~~~~~~~   85 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE--KKGI--------------RGYF----------FDTKDLIFRLKHL   85 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH--HSCC--------------CCCE----------EEHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH--HcCC--------------eEEE----------EEHHHHHHHHHHH
Confidence            455678999999999999999999999987631  1120              0111          12333322111  


Q ss_pred             -HcCCchhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHH
Q 048308           85 -LFRLPIKRVSRAQELLINPSLLFLDEPAS-GLDSTIAKQIL  124 (413)
Q Consensus        85 -~~~~~~krvsia~~l~~~p~llllDEPts-gLD~~~~~~i~  124 (413)
                       .-... +   -....+.+|++|++|||++ ++|...+..+.
T Consensus        86 ~~~~~~-~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~  123 (180)
T 3ec2_A           86 MDEGKD-T---KFLKTVLNSPVLVLDDLGSERLSDWQRELIS  123 (180)
T ss_dssp             HHHTCC-S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred             hcCchH-H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence             10110 1   2234466999999999986 99998887763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.93  E-value=6.4e-10  Score=106.42  Aligned_cols=102  Identities=13%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH-H----
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV-F----   82 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~-f----   82 (413)
                      +-+++|++++|+||||||||||++.+++...    .|.+. .|.+..  ....+.|+..++..-   .+.+.+. +    
T Consensus        25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~--~~~~v~~~~~e~~~~---~~~~r~~~~g~~~   94 (279)
T 1nlf_A           25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGEL--PTGPVIYLPAEDPPT---AIHHRLHALGAHL   94 (279)
T ss_dssp             TTEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCC--CCCCEEEEESSSCHH---HHHHHHHHHHTTS
T ss_pred             CCccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccC--CCccEEEEECCCCHH---HHHHHHHHHHhhc
Confidence            4589999999999999999999999998543    23332 233221  123466666554320   1111111 0    


Q ss_pred             --------HHHcCC-----------chhHHHHHHHHhhCCCEEEEeCCCC--CCCHHH
Q 048308           83 --------IALFRL-----------PIKRVSRAQELLINPSLLFLDEPAS--GLDSTI  119 (413)
Q Consensus        83 --------~~~~~~-----------~~krvsia~~l~~~p~llllDEPts--gLD~~~  119 (413)
                              ...+.+           +..-+.++++++.+|+++++||||+  ++|...
T Consensus        95 ~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~  152 (279)
T 1nlf_A           95 SAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENA  152 (279)
T ss_dssp             CHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred             ChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCc
Confidence                    011110           1123566788999999999999999  999743

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.90  E-value=3.7e-10  Score=104.72  Aligned_cols=102  Identities=16%  Similarity=0.239  Sum_probs=62.8

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCC--CCC---CCeeEEEEECCccc-C-h---hccccEEEEecC----CccCC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR--LST---GETRGNIDYNNNPL-S-R---TVKRKTGFVAHS----NVFYL   72 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~--~~~---~~~~G~i~~~g~~~-~-~---~~~~~~~~v~q~----~~~~~   72 (413)
                      .|-+++|++++|+||||||||||++.|++.  .++   +...|.+++++... . +   ...+.+++.+|+    -.+..
T Consensus        18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   97 (243)
T 1n0w_A           18 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYAR   97 (243)
T ss_dssp             TTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred             cCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEe
Confidence            367999999999999999999999999993  321   02458888888762 1 1   112234444431    11112


Q ss_pred             CCCHHHHHHHHHHcCCchhHHHHHHHHh--hCCCEEEEeCCCCCCCHH
Q 048308           73 HLTVTETLVFIALFRLPIKRVSRAQELL--INPSLLFLDEPASGLDST  118 (413)
Q Consensus        73 ~lTv~e~l~f~~~~~~~~krvsia~~l~--~~p~llllDEPtsgLD~~  118 (413)
                      ..+..+....          +.-+.+++  .+|+++++|||++.+|..
T Consensus        98 ~~~~~~~~~~----------~~~~~~~~~~~~~~lliiD~~~~~~~~~  135 (243)
T 1n0w_A           98 AFNTDHQTQL----------LYQASAMMVESRYALLIVDSATALYRTD  135 (243)
T ss_dssp             CCSHHHHHHH----------HHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred             cCCHHHHHHH----------HHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence            2333332221          11122333  589999999999999975

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.89  E-value=6.7e-11  Score=107.15  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC----hhccccEEEEecCCccCCCCCHHHHH
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      |+.+++|++++|+||||||||||+++|+|..+      .+.+++....    ...++.++|++|+...++.+++.+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF   72 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence            56788999999999999999999999999863      2444443322    12344678999987766666655543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.85  E-value=5.4e-10  Score=108.57  Aligned_cols=72  Identities=15%  Similarity=0.223  Sum_probs=47.8

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hc-cccEEEEecCCc------------
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TV-KRKTGFVAHSNV------------   69 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~-~~~~~~v~q~~~------------   69 (413)
                      .+.+|++++|+||||||||||+|+|+|+..  +.+|+|.+   +|+....   .. .+.+++|+|++.            
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~  242 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE  242 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence            346799999999999999999999999987  46799999   7876532   11 135789999864            


Q ss_pred             ----cCCCCCHHHHHHHH
Q 048308           70 ----FYLHLTVTETLVFI   83 (413)
Q Consensus        70 ----~~~~lTv~e~l~f~   83 (413)
                          ++|++|+ ||+.|.
T Consensus       243 ~~~~l~~~~~~-~n~~~~  259 (301)
T 1u0l_A          243 ELKHYFKEFGD-KQCFFS  259 (301)
T ss_dssp             HHGGGSTTSSS-CCCSST
T ss_pred             HHHHHHHhccc-ccCcCC
Confidence                5777888 777664

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.82  E-value=5.6e-10  Score=115.00  Aligned_cols=50  Identities=14%  Similarity=0.039  Sum_probs=45.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS   54 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~   54 (413)
                      +|+|+|+++++ |+++|+||||||||||+++|+|.+++  .+|+|.++|.+..
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~   68 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA   68 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence            68999999999 99999999999999999999999874  5799999998753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.82  E-value=4.9e-09  Score=109.05  Aligned_cols=124  Identities=11%  Similarity=0.062  Sum_probs=83.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEEecCCccCCCCCHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      +++++++.+++|+.++|+||||||||||+++|+|.+++  .+|.|.++|.. ......+.++++.|........|..+.+
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l  326 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL  326 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence            46788999999999999999999999999999999874  56999998864 2212234567777665533346766665


Q ss_pred             HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCcEEE----ecCcchHhHHHH
Q 048308           81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLH----VGKGDGVMSYFV  145 (413)
Q Consensus        81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~~v~----~G~~~~~~~~f~  145 (413)
                      .               .+|-.+|+.++++|-+. -+  ....+.-+..|+.+.    ..++.++..-+.
T Consensus       327 ~---------------~~LR~~PD~iivgEir~-~E--~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~  377 (511)
T 2oap_1          327 R---------------AALRQRPDYIIVGEVRG-RE--AQTLFQAMSTGHASYSTLHAGDINQMVYRLE  377 (511)
T ss_dssp             H---------------TTGGGCCSEEEESCCCS-TH--HHHHHHHHHTTCEEEEEEECSSHHHHHHHHH
T ss_pred             H---------------HhhccCCCeEEeCCcCH-HH--HHHHHHhhcCCCCcccccccCCHHHHHHHHH
Confidence            4               14446899999999764 33  222333444576442    233444444443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.81  E-value=5.2e-11  Score=109.08  Aligned_cols=45  Identities=29%  Similarity=0.408  Sum_probs=37.9

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCcccC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNNPLS   54 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~   54 (413)
                      .++|++++|+||||||||||+++|+|.+++ +...|.|..+|....
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            578999999999999999999999998753 234788888887654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.78  E-value=1.9e-10  Score=106.87  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHh-CCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLG-GRLS   38 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~-g~~~   38 (413)
                      ..+++|+++++|++++|+||||||||||+++|+ |.++
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            467999999999999999999999999999999 9874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.78  E-value=1.8e-09  Score=107.30  Aligned_cols=74  Identities=20%  Similarity=0.167  Sum_probs=50.6

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC-CcccChhccccEEEEecCCccCCCCCHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN-NNPLSRTVKRKTGFVAHSNVFYLHLTVTE   78 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~~~~~~~~~v~q~~~~~~~lTv~e   78 (413)
                      +++++.. .+|++++|+||||||||||+|+|+|... ....|+|..+ |........+.+++++|+..++++.||+|
T Consensus       206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e  280 (358)
T 2rcn_A          206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE  280 (358)
T ss_dssp             HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred             HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence            3445543 4899999999999999999999999875 1356999886 65543344557899999988888888888

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.76  E-value=4.7e-09  Score=103.07  Aligned_cols=104  Identities=17%  Similarity=0.179  Sum_probs=53.8

Q ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCC------C---HHHHHHHH
Q 048308           16 LAILGPSGRGKTTLPTTLGG-RLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHL------T---VTETLVFI   83 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~l------T---v~e~l~f~   83 (413)
                      ++|.||||+|||||++++++ ...  +..|.+.++|.+...  ..+..+++++|.+.+.-+.      .   +++.+.-.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  116 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEV  116 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHH
Confidence            89999999999999999999 454  346888888865432  1234567777765432111      1   33333221


Q ss_pred             HHc-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           84 ALF-RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        84 ~~~-~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      ... .+. +.+.+ ..+..+|+++++|||++ ||..++..+.
T Consensus       117 ~~~~~~~-~~~~l-s~l~~~~~vlilDE~~~-L~~~~~~~L~  155 (354)
T 1sxj_E          117 AQMEQVD-FQDSK-DGLAHRYKCVIINEANS-LTKDAQAALR  155 (354)
T ss_dssp             TTTTC--------------CCEEEEEECTTS-SCHHHHHHHH
T ss_pred             HHhcccc-ccccc-cccCCCCeEEEEeCccc-cCHHHHHHHH
Confidence            111 000 00000 11467999999999999 9999888774

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.76  E-value=8.5e-09  Score=99.91  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=67.4

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh-ccc---------cEEEEecCCccCCC
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT-VKR---------KTGFVAHSNVFYLH   73 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~---------~~~~v~q~~~~~~~   73 (413)
                      +++++.  +|++++++|+||+||||++..|++.+..  ..|.|.+.+.+.... ...         .+..++...    .
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~----~  162 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD----G  162 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT----T
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCC----C
Confidence            467777  8999999999999999999999998752  347787776654221 000         000010000    0


Q ss_pred             CCHHHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHH
Q 048308           74 LTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEP-ASGLDSTIAKQI  123 (413)
Q Consensus        74 lTv~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEP-tsgLD~~~~~~i  123 (413)
                      ....+           ..|..++.+...+++++++||| ++|+|......+
T Consensus       163 ~~p~~-----------l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l  202 (295)
T 1ls1_A          163 ESPES-----------IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL  202 (295)
T ss_dssp             CCHHH-----------HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred             CCHHH-----------HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence            00111           0366777777789999999999 999998777665

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.75  E-value=3.4e-10  Score=111.82  Aligned_cols=70  Identities=17%  Similarity=0.189  Sum_probs=57.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+++|+.+++|++++|+||||||||||+|+|+|.+.+  ..|+|.+.|.+...        ..++.+++++|+...+..
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  121 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR  121 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence            57899999999999999999999999999999998752  46888888866532        134568899998877653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.74  E-value=1.2e-09  Score=105.73  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=64.2

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH------
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA------   84 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~------   84 (413)
                      +++.+++|.|+||||||||.+.|++.+.+   .|      .     .++.+.+|+||+.+++. +.++++.+..      
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~   93 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL   93 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence            57899999999999999999999998752   11      0     13345566888887754 7777765531      


Q ss_pred             -------------------HcCCc----------------------hhHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 048308           85 -------------------LFRLP----------------------IKRVSRA--QELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        85 -------------------~~~~~----------------------~krvsia--~~l~~~p~llllDEPtsgLD~~~  119 (413)
                                         .++..                      .+|+.+|  +++  +|+|+|+|||++++|+..
T Consensus        94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A           94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence                               11111                      1355555  333  899999999999999753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.74  E-value=1.7e-09  Score=105.42  Aligned_cols=70  Identities=21%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hccccEEEEecCCccCC----CCCHH
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TVKRKTGFVAHSNVFYL----HLTVT   77 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~~~~~~~v~q~~~~~~----~lTv~   77 (413)
                      ..+.+|++++|+||||||||||+|+|+|...  ...|+|.+   +|+....   ..+...+|+.|.+.+.+    .+|+ 
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-  244 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-  244 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence            4567899999999999999999999999876  36799988   7765432   12222789999987655    6889 


Q ss_pred             HHH
Q 048308           78 ETL   80 (413)
Q Consensus        78 e~l   80 (413)
                      |++
T Consensus       245 e~l  247 (307)
T 1t9h_A          245 EEL  247 (307)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.68  E-value=6.8e-09  Score=100.89  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE---CCcccCh---hcc-ccEEEEecCCccC-----CCCCHH
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY---NNNPLSR---TVK-RKTGFVAHSNVFY-----LHLTVT   77 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~---~~~-~~~~~v~q~~~~~-----~~lTv~   77 (413)
                      +.+|++++|+||||||||||+|+|+ ..+  ..+|+|.+   +|+....   ..+ +.++|++|++.+.     +.+|+ 
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            3579999999999999999999999 766  46799998   8876542   122 2589999987543     78899 


Q ss_pred             HHH
Q 048308           78 ETL   80 (413)
Q Consensus        78 e~l   80 (413)
                      |++
T Consensus       238 e~l  240 (302)
T 2yv5_A          238 REV  240 (302)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            777

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.62  E-value=5.1e-08  Score=87.47  Aligned_cols=108  Identities=16%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC---------CeeEEEEECCcccC------hhccccEEEEecC----Cc--cCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLSTG---------ETRGNIDYNNNPLS------RTVKRKTGFVAHS----NV--FYLH   73 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~~---------~~~G~i~~~g~~~~------~~~~~~~~~v~q~----~~--~~~~   73 (413)
                      .++|+|+||||||||++.++|...+.         ..+|+|.++|.+..      ....+..++++|.    +.  +...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d  110 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD  110 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence            68999999999999999999975421         14789999886431      0111111122110    10  0001


Q ss_pred             CC---HHHHHH-HH---HH-c--CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           74 LT---VTETLV-FI---AL-F--RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        74 lT---v~e~l~-f~---~~-~--~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .+   ..+++. +.   .. .  +.+              .++..+|++++.+|+++++|  ||++|.....++.
T Consensus       111 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~  183 (191)
T 1oix_A          111 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAF  183 (191)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHH
Confidence            11   122221 11   11 1  111              13578999999999999999  9999998887763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.59  E-value=3.9e-09  Score=95.83  Aligned_cols=66  Identities=15%  Similarity=0.175  Sum_probs=44.9

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHHHHH
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ..++|++++|+||||||||||+++|++.+      |.+.++|.....   ..+...++++|+....+.+++.|++
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence            45789999999999999999999999875      778888876532   1122356777765444444444443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.58  E-value=5.2e-09  Score=105.61  Aligned_cols=104  Identities=13%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHH--hCCCCC--C-CeeEEEEECCccc-Ch----hccccEEEEecCCccCCCCCH
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTL--GGRLST--G-ETRGNIDYNNNPL-SR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l--~g~~~~--~-~~~G~i~~~g~~~-~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .|-+++|++++|+||||||||||++.+  ++..++  + ...+.+++++... ..    ...+.+++.+|        ++
T Consensus       172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~v  243 (400)
T 3lda_A          172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DA  243 (400)
T ss_dssp             TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HH
T ss_pred             cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hH
Confidence            367899999999999999999999954  555542  1 2346788888653 11    11223344333        22


Q ss_pred             HHHHHHHHHcCCch--hHHHHHHHHh--hCCCEEEEeCCCCCCCHH
Q 048308           77 TETLVFIALFRLPI--KRVSRAQELL--INPSLLFLDEPASGLDST  118 (413)
Q Consensus        77 ~e~l~f~~~~~~~~--krvsia~~l~--~~p~llllDEPtsgLD~~  118 (413)
                      .|++.+........  +.+..+.+++  .+|+++++|||++.+|..
T Consensus       244 leni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~  289 (400)
T 3lda_A          244 LNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD  289 (400)
T ss_dssp             HHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred             hhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence            22221110000000  1122222322  479999999999999964

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.58  E-value=4.4e-09  Score=94.23  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHH
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFI   83 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~   83 (413)
                      |++++|+||||||||||+++|++.     ..|.+.++|.+..+.  ...++++|.....+..|+++++.+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~   65 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDL   65 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHH
Confidence            789999999999999999999973     347888988654322  2345667665444556777777654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.56  E-value=8.2e-08  Score=93.01  Aligned_cols=91  Identities=21%  Similarity=0.332  Sum_probs=61.7

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHH-cCCc
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIAL-FRLP   89 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~-~~~~   89 (413)
                      ++|++++++|+|||||||+++.|++.+.+  .+|              +.+.++.+|..   ..+..|.+...+. .+++
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~~~~gl~  163 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH--------------KKIAFITTDTY---RIAAVEQLKTYAELLQAP  163 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC--------------CCEEEEECCCS---STTHHHHHHHHHTTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC--------------CEEEEEecCcc---cchHHHHHHHHHHhcCCC
Confidence            57999999999999999999999997641  123              23555655542   3456676665432 2222


Q ss_pred             ------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048308           90 ------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        90 ------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~  122 (413)
                            ...+..+.+.+.+|+++++|  |+|+|+.....
T Consensus       164 ~~~~~~~~~l~~al~~~~~~dlvIiD--T~G~~~~~~~~  200 (296)
T 2px0_A          164 LEVCYTKEEFQQAKELFSEYDHVFVD--TAGRNFKDPQY  200 (296)
T ss_dssp             CCBCSSHHHHHHHHHHGGGSSEEEEE--CCCCCTTSHHH
T ss_pred             eEecCCHHHHHHHHHHhcCCCEEEEe--CCCCChhhHHH
Confidence                  12344444456999999999  88999865543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.55  E-value=1.2e-08  Score=112.39  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             hHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHH
Q 048308           91 KRVSRAQELLINPS--LLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        91 krvsia~~l~~~p~--llllDEPtsgLD~~~~~~i  123 (413)
                      ||+.||++|+.+|+  +++|||||+|||+.....+
T Consensus       471 QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l  505 (916)
T 3pih_A          471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL  505 (916)
T ss_dssp             HHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHH
T ss_pred             HHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHH
Confidence            89999999999887  9999999999999998877

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.52  E-value=9.1e-09  Score=104.42  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChh--------ccccEEEEe--------
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRT--------VKRKTGFVA--------   65 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--------~~~~~~~v~--------   65 (413)
                      +|+++ . .++|++++|+|||||||||||++|+|.+++  .+|+|.+.+.+....        ..+.+++.+        
T Consensus       158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~L  233 (418)
T 1p9r_A          158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAIL  233 (418)
T ss_dssp             HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHG
T ss_pred             HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHh
Confidence            35555 3 389999999999999999999999998763  468999888775311        122344433        


Q ss_pred             -cCCcc--CCC----CCHHHHHHHHH
Q 048308           66 -HSNVF--YLH----LTVTETLVFIA   84 (413)
Q Consensus        66 -q~~~~--~~~----lTv~e~l~f~~   84 (413)
                       |++..  ++.    .|+++++.++.
T Consensus       234 rq~pd~i~vgEiRd~et~~~~l~a~~  259 (418)
T 1p9r_A          234 RQDPDVVMVGEIRDLETAQIAVQASL  259 (418)
T ss_dssp             GGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred             ccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence             66543  343    58888887653

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.51  E-value=7.4e-09  Score=109.86  Aligned_cols=127  Identities=20%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCC-------------
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSN-------------   68 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~-------------   68 (413)
                      ++++++..+++|+.++|+||||+|||||+++|++...+ ...|.+.+++.+.+.. ...++++++..             
T Consensus        49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~~-~p~i~~~p~g~~~~~~e~~~~~~~  126 (604)
T 3k1j_A           49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDEN-MPRIKTVPACQGRRIVEKYREKAK  126 (604)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCTT-SCEEEEEETTHHHHHHHHHHHHHH
T ss_pred             hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCccccc-CCcEEEEecchHHHHHHHHHHhhc
Confidence            46788889999999999999999999999999998864 3347888877765432 23466665432             


Q ss_pred             ---------ccCCCCCHHHHHH----------------------HHH---------HcCC-chhHHHHHHHHhhCCCEEE
Q 048308           69 ---------VFYLHLTVTETLV----------------------FIA---------LFRL-PIKRVSRAQELLINPSLLF  107 (413)
Q Consensus        69 ---------~~~~~lTv~e~l~----------------------f~~---------~~~~-~~krvsia~~l~~~p~lll  107 (413)
                               ..+..+++.+|+.                      |..         .+.. ..+++..+.....++.+||
T Consensus       127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~  206 (604)
T 3k1j_A          127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLF  206 (604)
T ss_dssp             HHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSEEE
T ss_pred             cchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCEEE
Confidence                     1111111111110                      100         0000 1244455666677999999


Q ss_pred             EeCCCCCCCHHHHHHHH-HhcCCcE
Q 048308          108 LDEPASGLDSTIAKQIL-LNSEGNS  131 (413)
Q Consensus       108 lDEPtsgLD~~~~~~i~-ll~~G~~  131 (413)
                      +||... |++..+..++ +|.+|++
T Consensus       207 LDEi~~-l~~~~q~~Ll~~Le~~~~  230 (604)
T 3k1j_A          207 IDEIAT-LSLKMQQSLLTAMQEKKF  230 (604)
T ss_dssp             ETTGGG-SCHHHHHHHHHHHHHSEE
T ss_pred             Eechhh-CCHHHHHHHHHHHHcCcE
Confidence            999988 8988888774 4555543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.50  E-value=5.6e-08  Score=94.65  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=58.1

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH-HHH
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV-FIA   84 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~-f~~   84 (413)
                      +++..++|++++|+|+|||||||+++.|++.+.+  ..|.|.+.+.+....     +             ..|.+. ++.
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-----~-------------a~eqL~~~~~  156 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-----A-------------AIEQLKIWGE  156 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-----H-------------HHHHHHHHHH
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-----H-------------HHHHHHHHHH
Confidence            4555688999999999999999999999998752  246676655432110     0             011111 111


Q ss_pred             HcCC---------chhHH---HHHHHHhhCCCEEEEeCCCC
Q 048308           85 LFRL---------PIKRV---SRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        85 ~~~~---------~~krv---sia~~l~~~p~llllDEPts  113 (413)
                      ..++         ..+++   .+++++..+|+++++|||..
T Consensus       157 ~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          157 RVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             HcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            1111         12445   68888999999999999975

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.48  E-value=4.3e-08  Score=96.05  Aligned_cols=94  Identities=17%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hc-----cccEEEE-ecCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TV-----KRKTGFV-AHSN   68 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~-----~~~~~~v-~q~~   68 (413)
                      ++++++..++|++++++|+||+||||++..|++.+..  ..|.|.+.+.+...        .+     +..+.++ .|..
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~  172 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL  172 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence            4789999999999999999999999999999998752  34777776654321        12     4468888 6654


Q ss_pred             ccCCCCCHHHHHHHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCC
Q 048308           69 VFYLHLTVTETLVFIALFRLPIKRVSRAQELLINPSLLFLDEPAS  113 (413)
Q Consensus        69 ~~~~~lTv~e~l~f~~~~~~~~krvsia~~l~~~p~llllDEPts  113 (413)
                      ...|..++.+++.               .++..+.+++++|-|=.
T Consensus       173 ~~~p~~~~~~~l~---------------~~~~~~yD~VIIDTpg~  202 (320)
T 1zu4_A          173 NADPASVVFDAIK---------------KAKEQNYDLLLIDTAGR  202 (320)
T ss_dssp             TCCHHHHHHHHHH---------------HHHHTTCSEEEEECCCC
T ss_pred             CCCHHHHHHHHHH---------------HHHhcCCCEEEEcCCCc
Confidence            4433333333332               23456778999996543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.47  E-value=3.1e-09  Score=99.17  Aligned_cols=58  Identities=14%  Similarity=0.095  Sum_probs=40.0

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC------------hhccccEEEEecC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS------------RTVKRKTGFVAHS   67 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------------~~~~~~~~~v~q~   67 (413)
                      ++.+++ ++++|+||||||||||+++|+|.+.+  .+|+|.++|.+..            ...+..++||+|+
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            455666 89999999999999999999998864  5688988887651            1124568999985

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.46  E-value=1.6e-09  Score=109.07  Aligned_cols=116  Identities=14%  Similarity=0.105  Sum_probs=76.6

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCC----------CCCeeEEEEECCcccCh-----hcccc---EEEEecCCc
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLS----------TGETRGNIDYNNNPLSR-----TVKRK---TGFVAHSNV   69 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~----------~~~~~G~i~~~g~~~~~-----~~~~~---~~~v~q~~~   69 (413)
                      +.+++|+.++|+|+||||||||+|+|+|...          ..+..|.+.++|...+.     ..++.   ..++.+..-
T Consensus        15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG   94 (392)
T 1ni3_A           15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG   94 (392)
T ss_dssp             SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence            4678999999999999999999999999321          12578999998854321     11222   236667777


Q ss_pred             cCCCCCHHHHH--HHHHHcCCch-----hHHHHHHHH-----hhCC--CEEEEeCCCCCCCHHHHHHH
Q 048308           70 FYLHLTVTETL--VFIALFRLPI-----KRVSRAQEL-----LINP--SLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        70 ~~~~lTv~e~l--~f~~~~~~~~-----krvsia~~l-----~~~p--~llllDEPtsgLD~~~~~~i  123 (413)
                      +.+..+..|.+  .|.+.++...     -+..=...+     -.+|  ++.++|||+.++|.....+.
T Consensus        95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~  162 (392)
T 1ni3_A           95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKH  162 (392)
T ss_dssp             GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHH
Confidence            77777877766  5554433211     000000111     1288  99999999999999887554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.46  E-value=8e-08  Score=97.38  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++++++++|+.++|+|+||||||||+++|+|..
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            6899999999999999999999999999999974

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.44  E-value=2.9e-07  Score=82.69  Aligned_cols=108  Identities=17%  Similarity=0.221  Sum_probs=62.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-----CC----CeeEEEEECCcccC---------hhccccEEEEecC-Cc--cCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS-----TG----ETRGNIDYNNNPLS---------RTVKRKTGFVAHS-NV--FYLH   73 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~-----~~----~~~G~i~~~g~~~~---------~~~~~~~~~v~q~-~~--~~~~   73 (413)
                      .++|+|+||||||||++.++|...     +.    ...|.|.++|.+..         +.+++......++ +.  +...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   86 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD   86 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence            479999999999999999998742     11    13688999886431         1111111111111 10  0011


Q ss_pred             CCH---HHHH-HHH---HHc---CCc-----------h---hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           74 LTV---TETL-VFI---ALF---RLP-----------I---KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        74 lTv---~e~l-~f~---~~~---~~~-----------~---krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .+-   .+++ .+.   ...   +.+           .   +....|++++.+|++.++|  ||++|.....++.
T Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~  159 (199)
T 2f9l_A           87 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAF  159 (199)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHH
Confidence            111   1221 111   110   111           1   2467899999999999999  9999988877763

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.35  E-value=1.5e-07  Score=84.88  Aligned_cols=30  Identities=33%  Similarity=0.411  Sum_probs=26.8

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++++|++++|+|||||||||++++|++.+.
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~   31 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS   31 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            578999999999999999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.31  E-value=1.4e-08  Score=92.20  Aligned_cols=47  Identities=26%  Similarity=0.393  Sum_probs=37.2

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE--EECCcccCh
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNI--DYNNNPLSR   55 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~~~   55 (413)
                      .+...++|++++|+|||||||||++++|++++.   ..|.+  .++|....+
T Consensus        18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~   66 (200)
T 3uie_A           18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRH   66 (200)
T ss_dssp             HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTT
T ss_pred             HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhh
Confidence            344458999999999999999999999999874   33655  788766543

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.28  E-value=9.1e-07  Score=76.93  Aligned_cols=41  Identities=24%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-----HhcCCcEEEe
Q 048308           94 SRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHV  134 (413)
Q Consensus        94 sia~~l~~~p~llllDEPtsgLD~~~~~~i~-----ll~~G~~v~~  134 (413)
                      ++|++|+.+|++++|||||+|||+.++..+.     +..+|+++..
T Consensus        73 alaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii  118 (148)
T 1f2t_B           73 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL  118 (148)
T ss_dssp             HHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred             HHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEE
Confidence            3458999999999999999999999998884     2234666554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.27  E-value=3e-08  Score=97.44  Aligned_cols=81  Identities=21%  Similarity=0.266  Sum_probs=57.5

Q ss_pred             ccccceeEEecC-------cEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEEECCcccCh----hccccEEEEecCC
Q 048308            2 ILKGIRGVSSLG-------ELLAILGPSGRGKTTLPTTLGGRLSTG--ETRGNIDYNNNPLSR----TVKRKTGFVAHSN   68 (413)
Q Consensus         2 iL~~vs~~~~~G-------e~~~ilG~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~----~~~~~~~~v~q~~   68 (413)
                      ++++++..+++|       +.++|.||||+|||||+++|+|.+...  ..+|.+..++.+...    ..++.+.++.|.+
T Consensus        33 ~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~  112 (334)
T 1in4_A           33 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH  112 (334)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGG
T ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchh
Confidence            456677777766       899999999999999999999976321  345655555544321    1245689999988


Q ss_pred             ccCCCCCHHHHHHHHH
Q 048308           69 VFYLHLTVTETLVFIA   84 (413)
Q Consensus        69 ~~~~~lTv~e~l~f~~   84 (413)
                      .+.+  ++.|++....
T Consensus       113 ~l~~--~~~e~L~~~~  126 (334)
T 1in4_A          113 RLNK--AVEELLYSAI  126 (334)
T ss_dssp             GCCH--HHHHHHHHHH
T ss_pred             hcCH--HHHHHHHHHH
Confidence            7765  7888885443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.26  E-value=8.3e-07  Score=97.75  Aligned_cols=51  Identities=25%  Similarity=0.373  Sum_probs=43.4

Q ss_pred             hHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH------------------------------HHh------cCCcEE
Q 048308           91 KRVSRAQELLINP--SLLFLDEPASGLDSTIAKQI------------------------------LLN------SEGNSL  132 (413)
Q Consensus        91 krvsia~~l~~~p--~llllDEPtsgLD~~~~~~i------------------------------~ll------~~G~~v  132 (413)
                      ||+.||++|..+|  ++++|||||+|||+.....+                              +.|      .+|+++
T Consensus       511 QRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv  590 (972)
T 2r6f_A          511 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVV  590 (972)
T ss_dssp             HHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEE
Confidence            8999999999985  99999999999999888776                              244      578888


Q ss_pred             EecCcchHh
Q 048308          133 HVGKGDGVM  141 (413)
Q Consensus       133 ~~G~~~~~~  141 (413)
                      +.|++++..
T Consensus       591 ~~G~~~e~~  599 (972)
T 2r6f_A          591 AAGTPEEVM  599 (972)
T ss_dssp             EEECTTTTT
T ss_pred             EecCHHHHH
Confidence            888877653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.26  E-value=2.2e-07  Score=82.79  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN   50 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g   50 (413)
                      .+|++++|+||||||||||++.|++..++ ...|.|....
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt   41 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT   41 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence            37999999999999999999999997642 2456555433

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=4.7e-07  Score=81.87  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=24.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|||+.+++|++++|+|+|||||||+.+.|++.+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            589999999999999999999999999999999765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.21  E-value=3.8e-07  Score=82.71  Aligned_cols=28  Identities=36%  Similarity=0.387  Sum_probs=23.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|++++|+||||||||||+|+|+|.++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            6899999999999999999999999753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.21  E-value=1.7e-08  Score=93.48  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             cccc-eeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            3 LKGI-RGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         3 L~~v-s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      |+++ .|-+++|++++|.||||||||||+..++.
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4555 77899999999999999999999665543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.20  E-value=3.9e-07  Score=87.14  Aligned_cols=46  Identities=26%  Similarity=0.390  Sum_probs=40.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      +++++++.+++|  ++|.||||||||||+|+|+|....    |.|.++|.+.
T Consensus        35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l   80 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPEL   80 (274)
T ss_dssp             HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTT
T ss_pred             HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHH
Confidence            578899999999  999999999999999999998752    7888888654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.19  E-value=7.3e-08  Score=85.95  Aligned_cols=92  Identities=17%  Similarity=0.164  Sum_probs=56.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEECCcccC-------hhcc-ccEE----EEecCCccCC-CCCHHH-
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDYNNNPLS-------RTVK-RKTG----FVAHSNVFYL-HLTVTE-   78 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~-------~~~~-~~~~----~v~q~~~~~~-~lTv~e-   78 (413)
                      ++++|+|+||||||||++.|+|.+++. ...|.|.++|.+..       +.++ +.++    ++.|+..++- .-.-.. 
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~   82 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG   82 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence            589999999999999999999987642 23799999997631       1233 3455    7888766541 100110 


Q ss_pred             -HH-HHHHH-c-CC-----------chhHHHHHHHHhhCCCE
Q 048308           79 -TL-VFIAL-F-RL-----------PIKRVSRAQELLINPSL  105 (413)
Q Consensus        79 -~l-~f~~~-~-~~-----------~~krvsia~~l~~~p~l  105 (413)
                       .+ .+... + +.           ++||++|||+++.+|++
T Consensus        83 a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           83 NDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             TCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             hCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence             11 12222 2 11           23899999999999887

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.17  E-value=6.4e-07  Score=88.71  Aligned_cols=94  Identities=19%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc-ChhccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL-SRTVKRKTGFVAHSNVFYLHLTVTETLVFIALF   86 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~-~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~   86 (413)
                      |-+++|+++.|.||||||||||+..++..... .....++++.... .+...+..++..++-.+....++.+.+      
T Consensus        56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l------  128 (349)
T 2zr9_A           56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL------  128 (349)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH------
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH------
Confidence            57899999999999999999998888754321 0112233433321 111112223222322222233554433      


Q ss_pred             CCchhHHHHHHHHhh--CCCEEEEeCCCCCC
Q 048308           87 RLPIKRVSRAQELLI--NPSLLFLDEPASGL  115 (413)
Q Consensus        87 ~~~~krvsia~~l~~--~p~llllDEPtsgL  115 (413)
                             .++++++.  +|+++++||+++.+
T Consensus       129 -------~~~~~l~~~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          129 -------EIADMLVRSGALDIIVIDSVAALV  152 (349)
T ss_dssp             -------HHHHHHHTTTCCSEEEEECGGGCC
T ss_pred             -------HHHHHHHhcCCCCEEEEcChHhhc
Confidence                   35666664  49999999999988

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.15  E-value=7.8e-07  Score=78.82  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            6889999999 999999999999999999988664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.11  E-value=2.8e-07  Score=86.83  Aligned_cols=68  Identities=22%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEEEE--------ECCcccCh-----hccccEEEEecCC-----c
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLG---GRLSTGETRGNID--------YNNNPLSR-----TVKRKTGFVAHSN-----V   69 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~-----~~~~~~~~v~q~~-----~   69 (413)
                      ++|++++|+|||||||||++++|+   |...  ..+|.+.        .+|.+...     ..++.+++++|++     .
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQV  102 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceE
Confidence            789999999999999999999999   7654  3568887        77766521     3445677877643     3


Q ss_pred             cCCCCCHHHHH
Q 048308           70 FYLHLTVTETL   80 (413)
Q Consensus        70 ~~~~lTv~e~l   80 (413)
                      .....++.+++
T Consensus       103 ~l~~~~v~~~i  113 (252)
T 4e22_A          103 ILEGEDVSNEI  113 (252)
T ss_dssp             EETTEECTTGG
T ss_pred             EECCeehhHHH
Confidence            34455565554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.10  E-value=5.7e-08  Score=94.91  Aligned_cols=41  Identities=20%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCC------CCeeEEEEECCccc
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLST------GETRGNIDYNNNPL   53 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~   53 (413)
                      =++++|+|+||||||||+|.|.|..+.      ....|+|.++|.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l   50 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI   50 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence            368999999999999999999998621      13568888888765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.10  E-value=1.2e-06  Score=79.90  Aligned_cols=28  Identities=32%  Similarity=0.431  Sum_probs=26.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|++++|+||||||||||++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            6899999999999999999999999875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.06  E-value=5.8e-07  Score=83.34  Aligned_cols=43  Identities=21%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      +-++..++|++++|.|+||||||||+++|+|.      .|+|.+.+.+.
T Consensus        12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~   54 (230)
T 2vp4_A           12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV   54 (230)
T ss_dssp             CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred             CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence            34455689999999999999999999999987      26677777654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.02  E-value=5.9e-07  Score=84.89  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=34.2

Q ss_pred             ccccceeEEec---CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            2 ILKGIRGVSSL---GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         2 iL~~vs~~~~~---Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +|+|+|+.+++   |+.++|+|+|||||||+.++|++.+
T Consensus        34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            68999999999   9999999999999999999999865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.98  E-value=4.6e-06  Score=75.49  Aligned_cols=30  Identities=33%  Similarity=0.386  Sum_probs=27.3

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+++|++++|+|+|||||||+.+.|++.++
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            468899999999999999999999999763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.97  E-value=1.3e-06  Score=81.72  Aligned_cols=45  Identities=22%  Similarity=0.358  Sum_probs=38.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      +++++++.+++|  ++|.||||+|||||+++|++...    .|.+.++|.+
T Consensus        40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~   84 (254)
T 1ixz_A           40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSD   84 (254)
T ss_dssp             HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHH
T ss_pred             HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHH
Confidence            467888999999  99999999999999999999764    4777777654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.95  E-value=1.6e-06  Score=86.70  Aligned_cols=42  Identities=26%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDY   48 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~   48 (413)
                      +++++|+.+++|++++|.||||||||||+++|+|..     .|.+..
T Consensus       158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~  199 (377)
T 1svm_A          158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALN  199 (377)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEEC
T ss_pred             HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEE
Confidence            578889999999999999999999999999999854     355544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.94  E-value=1.6e-06  Score=82.54  Aligned_cols=45  Identities=22%  Similarity=0.358  Sum_probs=38.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      +++++++.+++|  ++|+||||+|||||+++|++...    .|.|.+++.+
T Consensus        64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~  108 (278)
T 1iy2_A           64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSD  108 (278)
T ss_dssp             HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHH
T ss_pred             HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHH
Confidence            467889999999  99999999999999999999764    4778877754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.94  E-value=2.4e-06  Score=75.14  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      .+|++++|+|+|||||||+++.|++++      |.+.+++...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence            579999999999999999999999864      5667777654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.89  E-value=2.4e-06  Score=89.47  Aligned_cols=47  Identities=23%  Similarity=0.393  Sum_probs=37.7

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      ++++++.+ +|+.++|+||||+|||||+++|++...  ...|.|..+|..
T Consensus        99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~  145 (543)
T 3m6a_A           99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR  145 (543)
T ss_dssp             HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred             HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence            45666777 899999999999999999999999875  456778777643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.85  E-value=6.9e-06  Score=84.56  Aligned_cols=78  Identities=24%  Similarity=0.345  Sum_probs=49.3

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      ++++++.+++|  +.|.||||+|||||++++++.... +   -+.+++......              +    +.+    
T Consensus        41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-~---f~~is~~~~~~~--------------~----~g~----   92 (476)
T 2ce7_A           41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-P---FFHISGSDFVEL--------------F----VGV----   92 (476)
T ss_dssp             HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-C---EEEEEGGGTTTC--------------C----TTH----
T ss_pred             HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-C---eeeCCHHHHHHH--------------H----hcc----
Confidence            34556666666  889999999999999999986431 1   122333221110              0    011    


Q ss_pred             HHHcCCchhHHHHHHHHhhCCCEEEEeCCC
Q 048308           83 IALFRLPIKRVSRAQELLINPSLLFLDEPA  112 (413)
Q Consensus        83 ~~~~~~~~krvsia~~l~~~p~llllDEPt  112 (413)
                      ..    ...|..++++....|.++|+||+.
T Consensus        93 ~~----~~~r~lf~~A~~~~p~ILfIDEid  118 (476)
T 2ce7_A           93 GA----ARVRDLFAQAKAHAPCIVFIDEID  118 (476)
T ss_dssp             HH----HHHHHHHHHHHHTCSEEEEEETGG
T ss_pred             cH----HHHHHHHHHHHhcCCCEEEEechh
Confidence            00    124556777777899999999993

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.85  E-value=4.8e-06  Score=82.56  Aligned_cols=93  Identities=19%  Similarity=0.160  Sum_probs=61.2

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE-EEECCcccC-hhccccEEEEecCCccCCCCCHHHHHHHHHH
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGN-IDYNNNPLS-RTVKRKTGFVAHSNVFYLHLTVTETLVFIAL   85 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~-i~~~g~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~   85 (413)
                      |-+++|+++.|.||||||||||+..++.....  ..|. +++++.... ....+.+++.+|+..+....++.+.+..   
T Consensus        56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~---  130 (356)
T 3hr8_A           56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI---  130 (356)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH---
T ss_pred             CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH---
Confidence            46899999999999999999999999876431  2243 456655432 2233345555555544455577665543   


Q ss_pred             cCCchhHHHHHHHHh--hCCCEEEEeCCCCCC
Q 048308           86 FRLPIKRVSRAQELL--INPSLLFLDEPASGL  115 (413)
Q Consensus        86 ~~~~~krvsia~~l~--~~p~llllDEPtsgL  115 (413)
                                ++.++  .+|+++++|+-++=.
T Consensus       131 ----------~~~l~~~~~~dlvVIDSi~~l~  152 (356)
T 3hr8_A          131 ----------VDELVRSGVVDLIVVDSVAALV  152 (356)
T ss_dssp             ----------HHHHHHTSCCSEEEEECTTTCC
T ss_pred             ----------HHHHhhhcCCCeEEehHhhhhc
Confidence                      22333  578999999866544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.78  E-value=7.2e-06  Score=71.67  Aligned_cols=27  Identities=30%  Similarity=0.521  Sum_probs=24.6

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .|++++|+|+|||||||++++|++++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999999764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.78  E-value=3.7e-06  Score=76.16  Aligned_cols=41  Identities=27%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN   51 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~   51 (413)
                      ..++|++++|+|+||||||||++.|++.+++  ..|.+.+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~   58 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM   58 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence            3578999999999999999999999997642  2356655443

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=97.78  E-value=3.7e-05  Score=68.48  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHH
Q 048308           90 IKRVSRAQELLI----NPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        90 ~krvsia~~l~~----~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      ++|++||++++.    +|++++|||||+|||+.+...+.
T Consensus        70 kqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~  108 (173)
T 3kta_B           70 KALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA  108 (173)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH
Confidence            489999999974    46999999999999999998884

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.75  E-value=9.8e-06  Score=73.75  Aligned_cols=30  Identities=20%  Similarity=0.300  Sum_probs=26.4

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ...+|++++|+||||||||||++.|.+..+
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            345899999999999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.75  E-value=3.5e-06  Score=82.43  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=29.4

Q ss_pred             cccceeEEecCc------EEEEECCCCCCHHHHHHHHhCCCC
Q 048308            3 LKGIRGVSSLGE------LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         3 L~~vs~~~~~Ge------~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |++++..+..++      +++|.||||||||||+++|++++.
T Consensus        76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455555565555      999999999999999999999865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.71  E-value=2.1e-05  Score=68.12  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      ++.+..+.+| +++|+|||||||||++++|.
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4455566665 99999999999999999986

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.68  E-value=8.5e-06  Score=87.32  Aligned_cols=115  Identities=15%  Similarity=0.124  Sum_probs=63.8

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHHHHHHH
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |+.+++|+.++|+|++|+|||||++.|.+........|+| .+|....+    ..++.+++..|...+... +++.|+.-
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliD   80 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLD   80 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEe
Confidence            4567899999999999999999999999754322345666 45544321    123334444443222211 11111100


Q ss_pred             HHHcCCch-hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHh
Q 048308           83 IALFRLPI-KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLN  126 (413)
Q Consensus        83 ~~~~~~~~-krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll  126 (413)
                        -.+... ........-..+..++++| |+.|+|..+...+-.+
T Consensus        81 --TpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~  122 (665)
T 2dy1_A           81 --APGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVA  122 (665)
T ss_dssp             --CCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHH
T ss_pred             --CCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHH
Confidence              000001 1112222335788889999 9999999888666433

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.63  E-value=6.5e-06  Score=86.24  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEE-ECCccc
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NID-YNNNPL   53 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~~   53 (413)
                      .+++|++++|+|+||||||||+++|++++.+  ..| .+. ++|...
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcHH
Confidence            4679999999999999999999999998753  344 674 888654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.55  E-value=3.1e-05  Score=78.43  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=27.5

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..+.+|++++|+||||||||||+++|++...
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4466799999999999999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.53  E-value=1.2e-05  Score=82.08  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=63.0

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEEECCcccCh--hcccc----EEEEecCCccCCCCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NIDYNNNPLSR--TVKRK----TGFVAHSNVFYLHLT   75 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~--~~~~~----~~~v~q~~~~~~~lT   75 (413)
                      |+++.+-+++|+++.|.|+||+|||||+..+++....  ..| .+.+.+.+.+.  ..++.    .++..+ ......++
T Consensus       193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~-~l~~g~l~  269 (454)
T 2r6a_A          193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGNINAQ-NLRTGKLT  269 (454)
T ss_dssp             HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHTCCHH-HHHTSCCC
T ss_pred             HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcCCCHH-HHhcCCCC
Confidence            6677778999999999999999999999999876431  123 45444433321  11111    111111 11112344


Q ss_pred             HHHHHHHHH---Hc---C--------C-chhHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 048308           76 VTETLVFIA---LF---R--------L-PIKRVSRAQELL--INPSLLFLDEPASGLD  116 (413)
Q Consensus        76 v~e~l~f~~---~~---~--------~-~~krvsia~~l~--~~p~llllDEPtsgLD  116 (413)
                      ..|--.+..   .+   .        + ..+..+.++.+.  .+|+++++|+++...+
T Consensus       270 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~  327 (454)
T 2r6a_A          270 PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG  327 (454)
T ss_dssp             HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred             HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence            333211110   00   0        0 013446677776  5799999999998774

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.48  E-value=3.1e-05  Score=71.87  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             cccceeEEe---cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            3 LKGIRGVSS---LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         3 L~~vs~~~~---~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |+++|+++.   +|.+++|.|++||||||+++.|+..+.
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            567777776   999999999999999999999998875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.42  E-value=0.00015  Score=63.31  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=23.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|..++|+|+||+|||||++.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999999864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.39  E-value=0.00028  Score=67.09  Aligned_cols=77  Identities=25%  Similarity=0.311  Sum_probs=47.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCch
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI   90 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~   90 (413)
                      .++.-+.|.||+|+|||||++++++....    --+.+++.......             ..  ...+.           
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~----~~~~i~~~~l~~~~-------------~~--~~~~~-----------  101 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECSA----TFLNISAASLTSKY-------------VG--DGEKL-----------  101 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTC----EEEEEESTTTSSSS-------------CS--CHHHH-----------
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCC----CeEEeeHHHHhhcc-------------cc--hHHHH-----------
Confidence            46789999999999999999999986531    12233332111000             00  11111           


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           91 KRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        91 krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      .|..++.+...+|.++++||+.+-++.
T Consensus       102 ~~~~~~~~~~~~~~vl~iDEid~l~~~  128 (297)
T 3b9p_A          102 VRALFAVARHMQPSIIFIDEVDSLLSE  128 (297)
T ss_dssp             HHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred             HHHHHHHHHHcCCcEEEeccHHHhccc
Confidence            233344555678999999999876553

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.36  E-value=8.3e-05  Score=65.50  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE--EEEECCccc
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG--NIDYNNNPL   53 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G--~i~~~g~~~   53 (413)
                      ++|++++|+|++||||||+.+.|++.+.+   .|  .+.+++...
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChHH
Confidence            57999999999999999999999987631   23  556665543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.36  E-value=0.00014  Score=73.77  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=30.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC------C----CCeeEEEEECCccc
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS------T----GETRGNIDYNNNPL   53 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~------~----~~~~G~i~~~g~~~   53 (413)
                      -++|+|+||+|||||+|.|+|...      +    ....|.+.++|.+.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            789999999999999999999743      1    13458888888643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.34  E-value=4e-05  Score=75.32  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=32.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++++++..++|.+++|+|+||+|||||++.|++.+
T Consensus        45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467888889999999999999999999999998765

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.33  E-value=0.00012  Score=66.51  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      ++.+..+.+| +++|.|||||||||++++|.
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            3445555654 99999999999999999884

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.33  E-value=9.4e-05  Score=67.40  Aligned_cols=56  Identities=23%  Similarity=0.275  Sum_probs=37.9

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEEEE--------CCcccCh-----hccccEEEEecC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTG-ETRGNIDY--------NNNPLSR-----TVKRKTGFVAHS   67 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~-~~~G~i~~--------~g~~~~~-----~~~~~~~~v~q~   67 (413)
                      .+.+++|+|||||||||+.+.|++.+... ...|++..        +|.+...     ...+.+++++|+
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   73 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS   73 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence            35789999999999999999999865311 23466655        4554321     234456777664

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.32  E-value=0.0004  Score=66.73  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN   51 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~   51 (413)
                      .++++..+.|.||+|+|||||.++|++...    .+.+.+++.
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~   83 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGP   83 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhH
Confidence            467899999999999999999999998753    245556553

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.32  E-value=6.8e-05  Score=77.55  Aligned_cols=46  Identities=22%  Similarity=0.364  Sum_probs=38.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      +++++++.+++|  ++|.||||+|||||+++|++...    .+.+.+++...
T Consensus        55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~  100 (499)
T 2dhr_A           55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDF  100 (499)
T ss_dssp             GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGG
T ss_pred             hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHH
Confidence            467888999999  99999999999999999999764    46777777543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.32  E-value=0.0001  Score=65.45  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+..++|..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999999876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.30  E-value=0.0001  Score=66.58  Aligned_cols=29  Identities=31%  Similarity=0.350  Sum_probs=25.9

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..+|.+++|+||||||||||.+.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            45899999999999999999999988763

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.28  E-value=0.00023  Score=63.15  Aligned_cols=48  Identities=27%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC----C--CCeeEEEEECC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS----T--GETRGNIDYNN   50 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~----~--~~~~G~i~~~g   50 (413)
                      +++++++..++. -++++|++|+|||||++.+.+...    +  +...+.+.++|
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~   66 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN   66 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence            578899988887 668999999999999999987421    1  23456666665

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.22  E-value=0.00034  Score=68.61  Aligned_cols=27  Identities=26%  Similarity=0.209  Sum_probs=24.0

Q ss_pred             cCc--EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGE--LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge--~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +|.  .+.|.||+|+|||||++.+++...
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            456  899999999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.22  E-value=0.00016  Score=65.07  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      +++|+|+|||||||+.+.|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999998

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.19  E-value=6.4e-05  Score=68.26  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=33.9

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE--EEEECCcc
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG--NIDYNNNP   52 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G--~i~~~g~~   52 (413)
                      .+++|.+++|.|++||||||+.+.|++.+.+  ..|  .+.+++..
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~d~   64 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDGDN   64 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECChH
Confidence            3578999999999999999999999987641  345  67777654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.19  E-value=0.00042  Score=68.08  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=58.8

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |+.+.+-++||+++.|.|+||+|||||+.-++.....   .              ...+.|+.-      .++..+...=
T Consensus        36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~--------------g~~Vl~fSl------Ems~~ql~~R   92 (338)
T 4a1f_A           36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---D--------------DRGVAVFSL------EMSAEQLALR   92 (338)
T ss_dssp             HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---T--------------TCEEEEEES------SSCHHHHHHH
T ss_pred             HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---c--------------CCeEEEEeC------CCCHHHHHHH
Confidence            4556667899999999999999999998888754320   0              112333332      2333332211


Q ss_pred             --HHHc----------CCc---hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           83 --IALF----------RLP---IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        83 --~~~~----------~~~---~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                        +...          ++.   .+|+..|...+.++++++.|+|...+|.
T Consensus        93 lls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~  142 (338)
T 4a1f_A           93 ALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQ  142 (338)
T ss_dssp             HHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHH
T ss_pred             HHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHH
Confidence              1111          111   2688888889999999999999766553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.19  E-value=0.00024  Score=72.16  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++.+++++|++||||||++..|++.+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999997764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.17  E-value=0.00011  Score=65.70  Aligned_cols=34  Identities=32%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus        15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence            4677888888875 689999999999999999874

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.12  E-value=0.00034  Score=69.38  Aligned_cols=31  Identities=29%  Similarity=0.358  Sum_probs=28.3

Q ss_pred             HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHH
Q 048308           94 SRAQELLIN-PSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        94 sia~~l~~~-p~llllDEPtsgLD~~~~~~i~  124 (413)
                      ++|++|+.+ |++++|||||+|||...+..+.
T Consensus       296 a~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~  327 (371)
T 3auy_A          296 AIANALIGNRVECIILDEPTVYLDENRRAKLA  327 (371)
T ss_dssp             HHHHHHHSSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHH
Confidence            567888999 9999999999999999998884

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.12  E-value=0.0002  Score=70.69  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=28.8

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN   50 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g   50 (413)
                      +++..++|+|+||||||||+|.|+|...+  ..|.|.+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~  109 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLA  109 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEe
Confidence            45889999999999999999999986532  234454443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.09  E-value=7.9e-05  Score=73.64  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             ccccceeEEecCcE--EEEECCCCCCHHHHHHHHhCCC
Q 048308            2 ILKGIRGVSSLGEL--LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         2 iL~~vs~~~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++++++..+++|+.  ++|+|++||||||+.++|++.+
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            56788888999999  9999999999999999998864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.08  E-value=0.0013  Score=62.04  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=25.2

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++++.-+.|.||+|+|||||++++++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35677899999999999999999998753

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.07  E-value=0.00056  Score=66.34  Aligned_cols=92  Identities=13%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHH
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |+++.+-+++|+++.|.|+||+|||||+..++.....   .|              ..+.|+.-+      ++..+...=
T Consensus        58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g--------------~~vl~~slE------~s~~~l~~R  114 (315)
T 3bh0_A           58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND--------------DVVNLHSLE------MGKKENIKR  114 (315)
T ss_dssp             HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT--------------CEEEEEESS------SCHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC--------------CeEEEEECC------CCHHHHHHH
Confidence            4556677899999999999999999998877643210   01              123333322      222222111


Q ss_pred             H--HH--------------c-CCchhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           83 I--AL--------------F-RLPIKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        83 ~--~~--------------~-~~~~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      .  ..              + .-..+|+..|...+.++++++.|+|...+|.
T Consensus       115 ~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~  166 (315)
T 3bh0_A          115 LIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNY  166 (315)
T ss_dssp             HHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHH
T ss_pred             HHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence            0  00              1 1122577888888889999999999755443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.05  E-value=0.00022  Score=63.97  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999998

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.05  E-value=0.00033  Score=71.18  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.-+.|.||+|+|||||+++|++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.03  E-value=0.00029  Score=62.32  Aligned_cols=30  Identities=33%  Similarity=0.441  Sum_probs=26.7

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..++|.+++|+|++||||||+.+.|++.+.
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.02  E-value=0.00025  Score=68.33  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=23.0

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..++|+|+||+|||||+|.|.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            34489999999999999999999863

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.01  E-value=0.00051  Score=68.17  Aligned_cols=41  Identities=29%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             cCcE-EEEECCCCCCHHHHHHHHhCCCCC---------CCeeEEEEECCcc
Q 048308           12 LGEL-LAILGPSGRGKTTLPTTLGGRLST---------GETRGNIDYNNNP   52 (413)
Q Consensus        12 ~Ge~-~~ilG~sGsGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~   52 (413)
                      +|-. ++|+|+||||||||+|.|+|....         +...|.+.++|.+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~  227 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK  227 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence            3444 999999999999999999997531         1356888888754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.00  E-value=0.00033  Score=61.62  Aligned_cols=27  Identities=37%  Similarity=0.681  Sum_probs=23.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+|.+++|.|++||||||+.+.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999998643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.99  E-value=0.0003  Score=61.47  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .|.++.|.|+|||||||+.+.|+.++.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            367899999999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.99  E-value=0.0016  Score=63.26  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=26.5

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      |-+++|+++.|.||+|+|||||+..++..
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            67899999999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.99  E-value=0.00062  Score=59.53  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.98  E-value=0.00028  Score=62.74  Aligned_cols=39  Identities=38%  Similarity=0.340  Sum_probs=29.2

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECCc
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNNN   51 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~   51 (413)
                      -.+++|+|+||||||||++.|.+.+.. +...|.|..+++
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            358999999999999999999886432 233467766543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.97  E-value=0.00044  Score=59.69  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|+||+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.96  E-value=0.00034  Score=68.97  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=25.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +|++++..++   .++|+|++|||||||+|.|+|.
T Consensus        26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             ccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            4667777777   8999999999999999999995

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.96  E-value=0.002  Score=59.22  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -++|+|++|+|||||+|.|.|...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            479999999999999999999754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.00032  Score=62.94  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..+++|.|+|||||||+.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.91  E-value=0.0002  Score=67.05  Aligned_cols=41  Identities=20%  Similarity=0.207  Sum_probs=32.8

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCccc
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPL   53 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~   53 (413)
                      ..+++.++.|+|+|||||||+.+.|+..+..    +.+.+++...
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHHH
Confidence            5677899999999999999999999987641    4466676543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.90  E-value=0.00049  Score=59.43  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|.|++||||||+.+.|+.++
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.89  E-value=0.00013  Score=71.08  Aligned_cols=37  Identities=30%  Similarity=0.544  Sum_probs=31.5

Q ss_pred             ccccceeEEecCcE--EEEECCCCCCHHHHHHHHhCCCC
Q 048308            2 ILKGIRGVSSLGEL--LAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         2 iL~~vs~~~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++.++..++.|++  +.+.||||+||||+++++++.+.
T Consensus        33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            35566677788988  99999999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.86  E-value=0.00035  Score=65.11  Aligned_cols=32  Identities=31%  Similarity=0.623  Sum_probs=23.5

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++++..++|  ++|.||||+|||||+++|++...
T Consensus        39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            344444444  88999999999999999998653

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.86  E-value=0.00073  Score=68.23  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             hHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           91 KRVSRAQELL----INPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        91 krvsia~~l~----~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +|++||++|+    .+|++++|||||++||+..+..+.
T Consensus       340 ~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~  377 (430)
T 1w1w_A          340 TVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA  377 (430)
T ss_dssp             HHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH
Confidence            7999999999    579999999999999999999884

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.86  E-value=0.00046  Score=68.39  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=25.3

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      ++....+.|| +++|.|+|||||||++.+|.
T Consensus        17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4556666665 99999999999999999985

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.85  E-value=0.00059  Score=68.42  Aligned_cols=47  Identities=17%  Similarity=0.199  Sum_probs=33.2

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCC---------CCCeeEEEEECCc
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLS---------TGETRGNIDYNNN   51 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~---------~~~~~G~i~~~g~   51 (413)
                      .+-+.++.|..++|+|+||+|||||+|+|+|...         ..+..|.+.+++.
T Consensus        14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            3556778899999999999999999999998621         1134566666553

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.0014  Score=64.49  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..-.++++|+||+|||||++.|+|..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44579999999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.79  E-value=0.00061  Score=59.85  Aligned_cols=23  Identities=43%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999999853

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.78  E-value=0.00072  Score=59.38  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.7

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +|.+++|.|++||||||+.+.|+..+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.77  E-value=0.00019  Score=71.13  Aligned_cols=29  Identities=34%  Similarity=0.301  Sum_probs=23.7

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++++++.+      +|+|+||+|||||+|.|.+..
T Consensus        33 ~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           33 KKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             HHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             cCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            45555554      999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.77  E-value=0.00063  Score=62.75  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=24.9

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .-++|.+++|+|++||||||+.+.|++.+
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35789999999999999999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.75  E-value=0.00065  Score=59.93  Aligned_cols=27  Identities=33%  Similarity=0.464  Sum_probs=24.0

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999998654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.71  E-value=0.00081  Score=62.61  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -+++|.|||||||||+.+.|+..+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            389999999999999999999654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.69  E-value=0.00037  Score=70.62  Aligned_cols=45  Identities=18%  Similarity=0.003  Sum_probs=35.5

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      +++++.  +|++++++|++||||||++..|++.+..  ..|.|.+.+.+
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D  135 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAAD  135 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECC
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeecc
Confidence            356776  8999999999999999999999998753  24666665543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.69  E-value=0.00093  Score=58.72  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..+.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.68  E-value=0.00056  Score=68.30  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            788999999999999999999999999998754

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.67  E-value=1.6e-05  Score=86.64  Aligned_cols=45  Identities=20%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHH----H-hcCCcEEEec
Q 048308           91 KRVSRAQELLINPSLLFLDEPAS-GLDSTIAKQIL----L-NSEGNSLHVG  135 (413)
Q Consensus        91 krvsia~~l~~~p~llllDEPts-gLD~~~~~~i~----l-l~~G~~v~~G  135 (413)
                      .|..++..++.+++++++|||.. +||......++    - ..+.+++...
T Consensus       197 ~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~S  247 (773)
T 2xau_A          197 LREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMS  247 (773)
T ss_dssp             HHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEe
Confidence            34555667789999999999995 99976554442    1 2356666664

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.67  E-value=0.00094  Score=59.51  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+|.+++|.|++||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999999876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.67  E-value=0.00075  Score=63.27  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=22.0

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+++|+||||||||||.+.|++.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            3789999999999999999997653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.65  E-value=0.00094  Score=57.35  Aligned_cols=19  Identities=32%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q 048308           15 LLAILGPSGRGKTTLPTTL   33 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l   33 (413)
                      +++|.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.58  E-value=0.0012  Score=58.91  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=24.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +|.+++|.|++||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            577899999999999999999988654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.58  E-value=0.001  Score=58.29  Aligned_cols=27  Identities=33%  Similarity=0.399  Sum_probs=23.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..+..+.|.|++||||||+.+.|+..+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            457789999999999999999998554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.55  E-value=0.0013  Score=57.20  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.55  E-value=0.00027  Score=68.15  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=32.9

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN   51 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~   51 (413)
                      +++..+ |++++++|++|+||||++..|++.+..  ..+.+.+.+.
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~  134 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGA  134 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEec
Confidence            666665 999999999999999999999987642  2345555443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.53  E-value=0.00054  Score=60.77  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=26.6

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .....+++.+++|.|++||||||+.+.|+..+
T Consensus         5 ~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            5 FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            33445678899999999999999999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.52  E-value=0.0013  Score=58.31  Aligned_cols=24  Identities=33%  Similarity=0.660  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++|.|++||||||+.+.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999998653

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.50  E-value=0.0013  Score=58.12  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=24.1

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++.+++|.|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.50  E-value=0.0014  Score=58.80  Aligned_cols=28  Identities=25%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|.+++|.|++||||||+.+.|+..+
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999998654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.47  E-value=0.0014  Score=58.89  Aligned_cols=24  Identities=42%  Similarity=0.571  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+.|+||||||||||++.|....+
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            478999999999999999976543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.47  E-value=0.0013  Score=62.83  Aligned_cols=36  Identities=22%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNN   50 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g   50 (413)
                      ..|.++.|.|||||||||+.+.|+..++    .|.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence            4578999999999999999999987653    13455554

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.43  E-value=0.0015  Score=57.01  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|+|||||||+.+.|+.++
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.43  E-value=0.0017  Score=58.75  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=21.9

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      .+-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.41  E-value=0.0016  Score=58.36  Aligned_cols=28  Identities=29%  Similarity=0.379  Sum_probs=24.4

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|.+++|.|++||||||+.+.|+..+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999998654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.38  E-value=0.0019  Score=56.76  Aligned_cols=26  Identities=23%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.+++|.|++||||||+.+.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.36  E-value=0.0063  Score=58.97  Aligned_cols=28  Identities=21%  Similarity=0.396  Sum_probs=24.7

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+|..-+.|.||+|+|||+|.++++...
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            4566789999999999999999999865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.35  E-value=0.0017  Score=57.00  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++|.|++||||||+.+.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.35  E-value=0.0021  Score=58.37  Aligned_cols=27  Identities=33%  Similarity=0.537  Sum_probs=23.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|-.++|+|++||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            467889999999999999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.33  E-value=0.0016  Score=61.31  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|||||||+|.|+|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999974

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.31  E-value=0.0018  Score=57.53  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.8

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ..+++|.|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            458999999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.27  E-value=0.00093  Score=60.02  Aligned_cols=24  Identities=46%  Similarity=0.670  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.22  E-value=0.0025  Score=54.61  Aligned_cols=23  Identities=35%  Similarity=0.666  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            37999999999999999998864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.20  E-value=0.0026  Score=54.15  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.20  E-value=0.012  Score=57.75  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..-+.|.||+|+|||||.++++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999999765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.19  E-value=0.0018  Score=56.57  Aligned_cols=27  Identities=41%  Similarity=0.505  Sum_probs=19.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++.++.|.|++||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            567899999999999999999987653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.19  E-value=0.0021  Score=54.64  Aligned_cols=22  Identities=36%  Similarity=0.684  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|++|+|||||++.+.|..
T Consensus         5 i~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEECCCCCCHHHHHHHHcCcc
Confidence            7899999999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.0022  Score=56.25  Aligned_cols=24  Identities=38%  Similarity=0.458  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -.++|+|++|+|||||++.+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.16  E-value=0.0022  Score=54.42  Aligned_cols=22  Identities=14%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3789999999999999999875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.15  E-value=0.0029  Score=53.93  Aligned_cols=22  Identities=45%  Similarity=0.750  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|++|+|||||++.+.+..
T Consensus         5 i~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHhcc
Confidence            6899999999999999998753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.14  E-value=0.0021  Score=62.97  Aligned_cols=29  Identities=28%  Similarity=0.212  Sum_probs=26.6

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      |-+++|+++.|.||+|+|||||+..++..
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999999988764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.11  E-value=0.0026  Score=53.66  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++++|++|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.11  E-value=0.0028  Score=57.88  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++.+++|.|++||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.11  E-value=0.0027  Score=54.61  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.10  E-value=0.0034  Score=56.01  Aligned_cols=27  Identities=33%  Similarity=0.508  Sum_probs=23.2

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..+-+++|.|++||||||+.+.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999998654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.09  E-value=0.0026  Score=53.78  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.06  E-value=0.0027  Score=53.64  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.05  E-value=0.0029  Score=55.87  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+++|+|++|||||||++.|.+.+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            478999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.05  E-value=0.0028  Score=53.86  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++++|++|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.05  E-value=0.0036  Score=54.10  Aligned_cols=25  Identities=36%  Similarity=0.539  Sum_probs=21.9

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      =++++|.|++||||||+.+.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.03  E-value=0.0032  Score=59.78  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||+|.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.03  E-value=0.0024  Score=53.73  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3799999999999999999875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.02  E-value=0.0029  Score=55.47  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999863

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.01  E-value=0.003  Score=53.63  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++++|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.01  E-value=0.0038  Score=56.40  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=23.5

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..+.|.||+|+|||||++.++...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.01  E-value=0.0043  Score=53.33  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +.-.++|+|++|+|||||++.+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557899999999999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.00  E-value=0.0031  Score=53.69  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999865

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.00  E-value=0.0036  Score=56.39  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.98  E-value=0.003  Score=53.51  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.98  E-value=0.0038  Score=54.83  Aligned_cols=23  Identities=43%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57999999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.98  E-value=0.0031  Score=54.22  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.96  E-value=0.0057  Score=59.94  Aligned_cols=27  Identities=30%  Similarity=0.614  Sum_probs=24.4

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++.+++|+||+|||||||...|+.++.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            567999999999999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.96  E-value=0.0029  Score=55.31  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      =-++|+|++|+|||||++.+.+.
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999876

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.96  E-value=0.0029  Score=53.81  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|++|+|||||++.+.+..
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            7899999999999999998753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.96  E-value=0.004  Score=58.34  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .++.++.|.|++||||||+.+.|+..
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.95  E-value=0.0032  Score=54.18  Aligned_cols=23  Identities=39%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47999999999999999997753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.95  E-value=0.004  Score=55.46  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..+++|.|++||||||+.+.|+..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999998654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.95  E-value=0.0031  Score=57.27  Aligned_cols=26  Identities=19%  Similarity=0.111  Sum_probs=22.8

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.+++|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.95  E-value=0.0032  Score=54.89  Aligned_cols=23  Identities=35%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            58999999999999999998864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.94  E-value=0.0039  Score=55.45  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|.|++||||||+.+.|++++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.94  E-value=0.0032  Score=55.18  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+++|+|++||||||+.+.|+.++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.94  E-value=0.0067  Score=55.09  Aligned_cols=30  Identities=33%  Similarity=0.245  Sum_probs=25.9

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .....|..++|+||+|+|||||...|+.+.
T Consensus        29 ~v~~~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           29 LVDIYGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            344578899999999999999999998775

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.93  E-value=0.0035  Score=54.18  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+++|.|++||||||+.+.|+.++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.92  E-value=0.0062  Score=53.45  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999876553

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.015  Score=59.05  Aligned_cols=29  Identities=24%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|-.=+.+-||||+|||+|.+++|+...
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45556688999999999999999998653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.90  E-value=0.0034  Score=54.60  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|++|+|||||++.+.+..
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6899999999999999998853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.90  E-value=0.0042  Score=56.00  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.89  E-value=0.0041  Score=53.48  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.87  E-value=0.0036  Score=53.09  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.86  E-value=0.0038  Score=54.15  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            37899999999999999998753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.86  E-value=0.0033  Score=57.81  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHh
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      +.+|+.+++.||+||||||++..+.
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            3579999999999999999877664

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.86  E-value=0.0042  Score=54.37  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.+++|.|++||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.86  E-value=0.0037  Score=54.64  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999876

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.85  E-value=0.0033  Score=54.06  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.85  E-value=0.0048  Score=53.05  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.84  E-value=0.0054  Score=52.95  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+..+.|.||+|+|||||++.++..+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.83  E-value=0.0038  Score=53.16  Aligned_cols=23  Identities=39%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      =-++++|++|+|||||++.+.+.
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.017  Score=58.47  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|-.=+.+-||||+|||+|.+++|+...
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            34556688999999999999999998653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.80  E-value=0.0043  Score=58.94  Aligned_cols=27  Identities=41%  Similarity=0.513  Sum_probs=23.7

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |...+.|.||+|+||||+.++|++...
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            346899999999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.80  E-value=0.0052  Score=57.02  Aligned_cols=27  Identities=26%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++-.++|.||+||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.80  E-value=0.0039  Score=54.13  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.79  E-value=0.0045  Score=53.99  Aligned_cols=24  Identities=25%  Similarity=0.284  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -++|+|++|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            379999999999999999998764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.79  E-value=0.01  Score=57.17  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..+.|.||+|+|||||++.++....
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999987753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.79  E-value=0.0041  Score=52.70  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++++|++|+|||||++.+.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.79  E-value=0.0052  Score=56.46  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +...++.|+||+||||+|..+.|+..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            445578999999999999999998765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.78  E-value=0.004  Score=54.60  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.76  E-value=0.0056  Score=59.39  Aligned_cols=33  Identities=33%  Similarity=0.332  Sum_probs=28.0

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +|+....+ .|.-++|+|+||+|||||...+.++
T Consensus       135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            56655555 7999999999999999999999876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.74  E-value=0.0029  Score=54.78  Aligned_cols=24  Identities=38%  Similarity=0.337  Sum_probs=21.0

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      +.--++|+|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445789999999999999999975

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.73  E-value=0.0045  Score=58.10  Aligned_cols=23  Identities=30%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|||||||+|.|.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.71  E-value=0.0045  Score=53.05  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.71  E-value=0.0057  Score=58.86  Aligned_cols=26  Identities=38%  Similarity=0.488  Sum_probs=22.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.| .++|+|++|+|||||+|.|.|..
T Consensus         6 ~~g-~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            6 YSG-FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence            445 59999999999999999999863

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0046  Score=53.25  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999997653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.70  E-value=0.007  Score=59.92  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=21.3

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      |-.++|+|.||+|||||+|.|++.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            346899999999999999999884

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.70  E-value=0.0037  Score=60.72  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=24.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++++.++|.||+|+|||||++.+++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.70  E-value=0.0047  Score=53.31  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999999865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.69  E-value=0.0054  Score=53.37  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.=-++++|++|+|||||++.+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.69  E-value=0.0041  Score=53.32  Aligned_cols=22  Identities=36%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.68  E-value=0.0055  Score=55.56  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +|-.++|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.68  E-value=0.005  Score=53.03  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.68  E-value=0.0059  Score=58.80  Aligned_cols=24  Identities=38%  Similarity=0.479  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -.++|+|++|+|||||+|.|.|..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            389999999999999999999863

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.66  E-value=0.0049  Score=53.80  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++++|++|+|||||++.+.+..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57999999999999999998753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.65  E-value=0.013  Score=57.97  Aligned_cols=28  Identities=29%  Similarity=0.514  Sum_probs=24.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .++.-+.|.||+|+|||+|.++|+....
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            4567899999999999999999987653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.65  E-value=0.0046  Score=58.31  Aligned_cols=23  Identities=39%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||+|.|.+..
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.63  E-value=0.0049  Score=55.24  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.62  E-value=0.0078  Score=54.92  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=24.1

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      .|=+++|+++.|.|++|+|||||..-++
T Consensus        24 ~GGl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           24 EGGFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             TTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3568999999999999999999976543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.62  E-value=0.0046  Score=54.94  Aligned_cols=22  Identities=45%  Similarity=0.742  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5799999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.59  E-value=0.0073  Score=53.70  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..+.|.||+|+|||||+++++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.58  E-value=0.0063  Score=57.11  Aligned_cols=23  Identities=35%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||+|.++|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999854

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.57  E-value=0.0053  Score=54.15  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.57  E-value=0.0066  Score=53.68  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.57  E-value=0.0049  Score=53.42  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.57  E-value=0.0057  Score=52.97  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.56  E-value=0.0055  Score=54.19  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57999999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.56  E-value=0.0057  Score=53.51  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.56  E-value=0.0069  Score=55.27  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.55  E-value=0.0067  Score=56.37  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -+++|.|++||||||+.+.|+..+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.55  E-value=0.0056  Score=53.57  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.021  Score=57.24  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +|-.=+.+-||||+|||+|.+++|+...
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence            3444578999999999999999998653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.51  E-value=0.006  Score=58.24  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|||||||+|.|.|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999974

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.51  E-value=0.0063  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37999999999999999998753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.51  E-value=0.0061  Score=56.65  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||++.|.|..
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.51  E-value=0.0081  Score=55.05  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=23.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..+..+.|+|++||||||+.+.|+..+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            455689999999999999999998765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.50  E-value=0.0074  Score=54.84  Aligned_cols=23  Identities=39%  Similarity=0.638  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.|+|||||||+|..+.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999998765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.50  E-value=0.0053  Score=53.84  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.49  E-value=0.0064  Score=57.47  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|.+|||||||+|.+.|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.49  E-value=0.0061  Score=52.66  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.49  E-value=0.0062  Score=56.31  Aligned_cols=31  Identities=32%  Similarity=0.443  Sum_probs=22.2

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++..+|.++++.|++||||||+.+.|+..+.
T Consensus        20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             ---CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456889999999999999999999987653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.47  E-value=0.0077  Score=54.07  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ..+++|.|++||||||+.+.|+.+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999865

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.47  E-value=0.0055  Score=53.47  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.47  E-value=0.0058  Score=53.75  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.46  E-value=0.0068  Score=52.28  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+..+.|.||+|+|||||++.++...
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.45  E-value=0.0077  Score=51.88  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.024  Score=57.72  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=24.3

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|-.=+.+-||+|+|||+|.++||+...
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            34556688999999999999999998653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.44  E-value=0.0065  Score=53.14  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.44  E-value=0.0063  Score=53.86  Aligned_cols=21  Identities=33%  Similarity=0.687  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      -++|+|++|+|||||++.+.|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            389999999999999999986

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.44  E-value=0.0072  Score=54.90  Aligned_cols=23  Identities=13%  Similarity=0.309  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      --++|+|++|+|||||++.+.+.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999875

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.43  E-value=0.0037  Score=56.21  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||+|.|.|..
T Consensus        31 ~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCS
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.43  E-value=0.0072  Score=52.97  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      --++|+|++|+|||||++.+.+..
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.43  E-value=0.0068  Score=61.00  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=23.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.+++.|+|+|||||||+.+.|+..+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            456899999999999999999998653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.42  E-value=0.0081  Score=57.93  Aligned_cols=28  Identities=21%  Similarity=0.147  Sum_probs=25.6

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      |-+++|+++.|.||+|+|||||...++.
T Consensus        93 GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           93 GGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999999999888764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.42  E-value=0.0071  Score=52.80  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .=-++|+|++|+|||||++.+.+.
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.41  E-value=0.015  Score=51.87  Aligned_cols=23  Identities=39%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.41  E-value=0.029  Score=56.93  Aligned_cols=26  Identities=31%  Similarity=0.422  Sum_probs=23.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.+++++|++|+||||+...|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            46899999999999999999998654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.40  E-value=0.0081  Score=57.01  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .++.|+|+|||||||+.+.|+.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.40  E-value=0.0055  Score=53.64  Aligned_cols=23  Identities=30%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.38  E-value=0.0073  Score=53.61  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.38  E-value=0.0063  Score=60.36  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|+||+|||||+|.|++.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.38  E-value=0.006  Score=54.07  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47999999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.37  E-value=0.0072  Score=52.70  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.36  E-value=0.0071  Score=53.07  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.35  E-value=0.0071  Score=52.97  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.35  E-value=0.0079  Score=54.28  Aligned_cols=23  Identities=22%  Similarity=0.275  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999999998654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.34  E-value=0.0064  Score=52.54  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      -++|+|++|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            478999999999999999984

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.34  E-value=0.0058  Score=58.78  Aligned_cols=26  Identities=35%  Similarity=0.447  Sum_probs=22.9

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..+.|.||+|+|||||++++++..
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35689999999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.34  E-value=0.0074  Score=53.19  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.33  E-value=0.0067  Score=52.73  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.32  E-value=0.0065  Score=53.31  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            47999999999999999998753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.32  E-value=0.0073  Score=53.62  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      =-++|+|++|+|||||++.+.+.
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.32  E-value=0.0074  Score=53.00  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.31  E-value=0.0072  Score=57.09  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|.+|+|||||+|.|.|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999864

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.31  E-value=0.0081  Score=59.59  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+..++|+|+||||||||++.+.+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.30  E-value=0.0066  Score=53.87  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.30  E-value=0.0096  Score=52.58  Aligned_cols=24  Identities=17%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -++|+|++|+|||||++.+.+...
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            479999999999999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.29  E-value=0.0072  Score=54.32  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -.++|+|++|+|||||++.|++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.29  E-value=0.0081  Score=53.12  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      =-++|+|++|+|||||++.+.+..
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            357999999999999999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.28  E-value=0.0094  Score=52.56  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=20.5

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .=-++|+|++|+|||||++.+.+..
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3358999999999999999998753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.27  E-value=0.0083  Score=57.00  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             cEEEEECCCCCCHHHHHHHHhC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      -+++|.|++||||||+.+.|+.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999983

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.27  E-value=0.011  Score=52.85  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.|.||+|+|||||++.++...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            89999999999999999998754

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.24  E-value=0.0078  Score=62.24  Aligned_cols=30  Identities=13%  Similarity=0.063  Sum_probs=26.9

Q ss_pred             ceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            6 IRGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         6 vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      +++.+.+|..++|.|++||||||++++|..
T Consensus       160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            567778899999999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.22  E-value=0.0063  Score=52.41  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.20  E-value=0.011  Score=53.85  Aligned_cols=28  Identities=36%  Similarity=0.550  Sum_probs=24.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+|.++++.|++||||||+.+.|+..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999987654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.18  E-value=0.0061  Score=52.78  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=9.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.17  E-value=0.0094  Score=53.57  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999999874

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.17  E-value=0.0063  Score=61.69  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=28.5

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      |+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus       190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            3445566899999999999999999998887754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.17  E-value=0.011  Score=54.44  Aligned_cols=27  Identities=30%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..-+.|.||+|+|||||.++++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            455668899999999999999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.17  E-value=0.0076  Score=53.94  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4799999999999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.16  E-value=0.009  Score=52.40  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4799999999999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.15  E-value=0.0086  Score=52.85  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .=-++|+|++|+|||||++.+.+.
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.14  E-value=0.0057  Score=58.55  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++-+++|.|++||||||+.+.|+..+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.14  E-value=0.0082  Score=58.86  Aligned_cols=25  Identities=32%  Similarity=0.634  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+++|.||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4799999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.13  E-value=0.0081  Score=53.56  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++++|++|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.13  E-value=0.0084  Score=58.38  Aligned_cols=25  Identities=32%  Similarity=0.600  Sum_probs=22.5

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4799999999999999999998763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.034  Score=56.15  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++-.=+.+-||+|+|||+|.+++|+...
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHhC
Confidence            4445689999999999999999998653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.09  E-value=0.0076  Score=56.32  Aligned_cols=28  Identities=21%  Similarity=0.182  Sum_probs=24.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++.+++|.|+.||||||+.+.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5788999999999999999999988764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.09  E-value=0.0094  Score=53.18  Aligned_cols=22  Identities=27%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.08  E-value=0.012  Score=57.09  Aligned_cols=26  Identities=42%  Similarity=0.673  Sum_probs=23.1

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +.+++|+||+|||||||.+.|+..+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            45899999999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.04  E-value=0.0087  Score=53.66  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.04  E-value=0.0081  Score=54.12  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.+++|.|++||||||+.+.|+.++
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999998865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.02  E-value=0.0037  Score=58.30  Aligned_cols=22  Identities=36%  Similarity=0.762  Sum_probs=20.2

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|.||+|+|||||.+++++..
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999999764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.00  E-value=0.013  Score=53.26  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.98  E-value=0.006  Score=54.67  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.98  E-value=0.0093  Score=52.88  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.94  E-value=0.012  Score=55.12  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||++.|.|..
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.93  E-value=0.011  Score=55.36  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++++|++|+|||||+|.|.|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.91  E-value=0.014  Score=54.32  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+|.++++.|++||||||+.+.|+..+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999987654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.89  E-value=0.016  Score=57.08  Aligned_cols=29  Identities=34%  Similarity=0.568  Sum_probs=25.6

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      |-+++|+++.|.|++|+|||||...++..
T Consensus        58 GGl~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           58 GGLPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999998877653

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.89  E-value=0.015  Score=56.58  Aligned_cols=28  Identities=29%  Similarity=0.451  Sum_probs=25.5

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      |-+++|.++.|.||+|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            6688999999999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.88  E-value=0.018  Score=51.06  Aligned_cols=30  Identities=23%  Similarity=0.117  Sum_probs=25.1

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +.....|.-++|.|+||+|||||...+..+
T Consensus        10 s~v~v~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           10 NFLVIDKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            344567889999999999999999888764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.84  E-value=0.0054  Score=59.21  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=20.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|.||+|+||||+++++++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.84  E-value=0.015  Score=53.30  Aligned_cols=98  Identities=19%  Similarity=0.223  Sum_probs=55.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEEC---CcccChhccccEEEEecCCccCCCCCH-HHHHHHHHHc
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN---NNPLSRTVKRKTGFVAHSNVFYLHLTV-TETLVFIALF   86 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~---g~~~~~~~~~~~~~v~q~~~~~~~lTv-~e~l~f~~~~   86 (413)
                      ++|.++++.|++||||||+.+.|+..+..   .+.+.-.   |.+..+..++   ++.+..   ..++. -|.|.|++..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~---~l~~~~---~~~~~~~~~llf~a~R   73 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINE---YLTDDS---FQLSDQAIHLLFSANR   73 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHH---HHHCTT---SCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHH---HHHhcc---cCCCHHHHHHHHHHHH
Confidence            46899999999999999999999987752   2433321   1121111221   222211   12332 2566666542


Q ss_pred             CCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           87 RLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        87 ~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      . .... .|--+ +.+-+++++|=   -.|+..+.+-
T Consensus        74 ~-~~~~-~I~pa-L~~g~~VI~DR---y~~S~~ayq~  104 (216)
T 3tmk_A           74 W-EIVD-KIKKD-LLEGKNIVMDR---YVYSGVAYSA  104 (216)
T ss_dssp             H-TTHH-HHHHH-HHTTCEEEEES---CHHHHHHHHH
T ss_pred             H-HHHH-HHHHH-HHcCCEEEEec---cHhHHHHHHH
Confidence            2 1121 23333 34568899984   7777777764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.83  E-value=0.011  Score=51.76  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.81  E-value=0.015  Score=49.27  Aligned_cols=27  Identities=19%  Similarity=0.111  Sum_probs=23.4

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.+.-+.|.||+|+|||++.++|+...
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            456678999999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.81  E-value=0.0086  Score=52.25  Aligned_cols=25  Identities=24%  Similarity=0.174  Sum_probs=21.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +.=-++++|++|+|||||++.+.+.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            3446899999999999999999654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.74  E-value=0.0063  Score=53.66  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=4.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999876

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.73  E-value=0.016  Score=54.92  Aligned_cols=27  Identities=30%  Similarity=0.457  Sum_probs=23.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++.-+.|.||+|+|||||.++++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            456679999999999999999988764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.72  E-value=0.015  Score=54.84  Aligned_cols=25  Identities=28%  Similarity=0.472  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -.++++|.||+|||||+|.|.|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            3789999999999999999998753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.70  E-value=0.014  Score=52.68  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.70  E-value=0.017  Score=52.72  Aligned_cols=27  Identities=30%  Similarity=0.358  Sum_probs=24.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +|.++++-|++||||||+.+.|+..+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999987654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.67  E-value=0.017  Score=53.11  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=23.5

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |.+++|-|+.||||||+.+.|+..++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            67899999999999999999998764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.67  E-value=0.019  Score=52.82  Aligned_cols=28  Identities=32%  Similarity=0.347  Sum_probs=24.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|.++++.|++||||||+.+.|+..+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999987653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.66  E-value=0.013  Score=52.09  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4799999999999999999764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.60  E-value=0.052  Score=59.04  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|-.-+.|-||+|+|||+|.|++++...
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            44556689999999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.58  E-value=0.017  Score=52.00  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -.++|+|.+|+|||||++.+++.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.56  E-value=0.02  Score=50.90  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHh
Q 048308           12 LGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      +|.+..+.||.||||||++.-++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999974443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.54  E-value=0.014  Score=59.17  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .++|+|++|+|||||+|.|.|.
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999885

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.50  E-value=0.022  Score=55.17  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..+++|+||+|||||||.+.|+..+.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC
Confidence            45899999999999999999997653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.49  E-value=0.015  Score=51.76  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      =-++++|++|+|||||++.+.+.
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999999754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.47  E-value=0.017  Score=52.00  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.44  E-value=0.021  Score=58.38  Aligned_cols=29  Identities=28%  Similarity=0.343  Sum_probs=25.2

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+-+|+..+|.|+||+|||||++.|++..
T Consensus       147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          147 PYIKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             CEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             hhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            35679999999999999999999997653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.43  E-value=0.015  Score=51.68  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.43  E-value=0.019  Score=54.68  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=22.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++-..+.|.||+|+|||+|.++|+..+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            334577888999999999999999765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.42  E-value=0.021  Score=52.93  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++||||||+.+.|+..+
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHh
Confidence            57999999999999999998754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.39  E-value=0.021  Score=50.33  Aligned_cols=23  Identities=39%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.|.||+|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999998654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.38  E-value=0.017  Score=56.12  Aligned_cols=27  Identities=26%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++..+.|.||+|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.32  E-value=0.022  Score=53.19  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=23.0

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..-+.|.||+|+|||||.++++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            455678999999999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.27  E-value=0.025  Score=54.46  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=23.7

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +|..-+.|.||+|+|||+|.++++...
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            456679999999999999999998764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.26  E-value=0.023  Score=55.31  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=24.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+|..+.|.||+|+|||||.+.++....
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4577899999999999999999987654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.16  E-value=0.028  Score=54.09  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++-+.|.||+|+|||+|+++|+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6889999999999999999998643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.16  E-value=0.024  Score=56.82  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -.+++|+||+|||||||.+.|+..+.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC
Confidence            35889999999999999999987653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.12  E-value=0.025  Score=53.31  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.-+.|.||+|+|||||.+.++..+
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999998765

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.08  E-value=0.017  Score=56.59  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|.+|+|||||+|.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999964

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.01  E-value=0.026  Score=55.21  Aligned_cols=26  Identities=38%  Similarity=0.565  Sum_probs=23.4

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.-+.|.||+|+||||+.++|+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            56678999999999999999999865

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=93.98  E-value=0.03  Score=53.21  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -.++++|.||+|||||+|.|.|..
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCc
Confidence            368999999999999999999874

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.95  E-value=0.017  Score=58.58  Aligned_cols=34  Identities=15%  Similarity=0.106  Sum_probs=27.5

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      |+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~  220 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN  220 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence            3444456899999999999999999997777643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=93.89  E-value=0.033  Score=55.11  Aligned_cols=28  Identities=36%  Similarity=0.529  Sum_probs=24.8

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      |-+++|+++.|.||+|+|||||...++.
T Consensus        69 GGl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           69 GGIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            4689999999999999999999877654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=93.87  E-value=0.032  Score=53.49  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +--++|+|++|+|||||++.+.+.
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999998776

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=92.93  E-value=0.011  Score=52.50  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            4799999999999999988753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=93.84  E-value=0.0076  Score=53.29  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||++.+.+..
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=93.82  E-value=0.027  Score=56.27  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|.+++|||||+|.|.|..
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.81  E-value=0.036  Score=54.36  Aligned_cols=26  Identities=35%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..-.++|+|++|+|||||++.|++.+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999997653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=93.77  E-value=0.026  Score=56.91  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .++|+|++|+|||||+|.|+|.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999885

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=93.74  E-value=0.043  Score=54.45  Aligned_cols=38  Identities=29%  Similarity=0.372  Sum_probs=29.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC---------CCeeEEEEECCcc
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLST---------GETRGNIDYNNNP   52 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~   52 (413)
                      -++|+|.|-+|||||+|+|+|....         .+..|.+.++|.+
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~  120 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK  120 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence            5899999999999999999986431         1356888887754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.74  E-value=0.018  Score=48.61  Aligned_cols=27  Identities=11%  Similarity=0.030  Sum_probs=22.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.+.-+.|.||+|+|||++.+.|+...
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            345668999999999999999997653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.72  E-value=0.062  Score=54.18  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|.+++|||||+|.|.|..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~   25 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKK   25 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999863

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.70  E-value=0.034  Score=54.13  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..+.|.||+|+|||||++.++...
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.69  E-value=0.031  Score=56.50  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=23.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +|-.=+.+-||||+|||+|.+++|+...
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4445688999999999999999998653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=93.63  E-value=0.021  Score=51.33  Aligned_cols=22  Identities=41%  Similarity=0.668  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHH-HhCC
Q 048308           15 LLAILGPSGRGKTTLPTT-LGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~-l~g~   36 (413)
                      -++|+|++|+|||||++. +.|.
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            489999999999999998 5554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=93.58  E-value=0.031  Score=58.81  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +--.++|+|++|+|||||+|.|.|..
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            34568999999999999999999974

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=93.52  E-value=0.035  Score=54.39  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..-+.|.||+|+|||||.++++...
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            455668899999999999999999765

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=93.50  E-value=0.024  Score=57.58  Aligned_cols=29  Identities=34%  Similarity=0.604  Sum_probs=23.9

Q ss_pred             EecCcE--EEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGEL--LAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~--~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++.|++  +.|.||+|+|||||.++|+....
T Consensus        45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           45 IEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            344554  89999999999999999998754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=93.50  E-value=0.045  Score=50.32  Aligned_cols=29  Identities=31%  Similarity=0.225  Sum_probs=22.2

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .-.+|.+..+.|+.|+||||++--++.+.
T Consensus         8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A            8 SKKIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             ---CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            34689999999999999999876665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-13
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	3e-11
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	5e-11
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-10
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	4e-10
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	5e-10
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	5e-09
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-08
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-08
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	4e-08
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	7e-08
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	9e-08
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-07
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	6e-07
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	9e-07
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-06
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-06
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-06
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-05
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	4e-05

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 33/142 (23%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           G ++   GP+G GKTTL  T+   L     +G I YN  P+++ VK K  F+    +   
Sbjct: 27  GNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPITK-VKGKIFFLPEEIIVPR 83

Query: 73  HLTVTETLVFIALFRLPIKRVSRAQELL------------------------------IN 102
            ++V + L  +A         +   + L                              +N
Sbjct: 84  KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 143

Query: 103 PSLLFLDEPASGLDSTIAKQIL 124
             +  LD+P   +D     ++L
Sbjct: 144 AEIYVLDDPVVAIDEDSKHKVL 165

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 50/162 (30%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGE-------------TRGNIDYNNNPLSRTV 57
           G++++I+G SG GK+T    +    + S G                G +   +    R +
Sbjct: 28  GDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 87

Query: 58  KRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI--------------------------- 90
           + +   V      + H+TV E ++   +  L +                           
Sbjct: 88  RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP 147

Query: 91  --------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                   +RVS A+ L + P +L  DEP S LD  +  ++L
Sbjct: 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 189

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 33/145 (22%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE L +LGPSG GKTT    + G     E R      +        R    V  S   + 
Sbjct: 32  GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 91

Query: 73  HLTVTETLVF-------------------IALFRLP--------------IKRVSRAQEL 99
           H+TV E + F                     L ++                +RV+ A+ +
Sbjct: 92  HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 151

Query: 100 LINPSLLFLDEPASGLDSTIAKQIL 124
           ++ P +L +DEP S LD+ +   + 
Sbjct: 152 VVEPDVLLMDEPLSNLDAKLRVAMR 176

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 43/155 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGN----IDYNNNPLSRTVKRKTGFVAH 66
           GE ++I+GPSG GK+T+   +G   + + GE   +     D +++ L++  + K GFV  
Sbjct: 31  GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90

Query: 67  SNVFYLHLTVTETLVFIALFRLPIK----------------------------------- 91
                  LT  E +    +F+                                       
Sbjct: 91  QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150

Query: 92  --RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
             RV+ A+ L  NP ++  D+P   LDS   ++I+
Sbjct: 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIM 185

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 66/244 (27%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYN---NNPLS 54
           ILKGI    S     GE+  ++GP+G GKTT    +   +    + G +           
Sbjct: 17  ILKGI----SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEP 70

Query: 55  RTVKRKTGFVAHSNVFYLHLTVTETLVFIA-------------------LFRLPIK---- 91
             V++   ++      Y ++   E L F+A                   +  L  K    
Sbjct: 71  HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR 130

Query: 92  ----------RVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVM 141
                     ++  A+ L++NP L  LDEP SGLD   A+++        L     +G+ 
Sbjct: 131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-----RKILKQASQEGLT 185

Query: 142 SYFVGIGFEPSAAMNPSDFLLDLANGVV--SGDPKDDQKALKETLISAYKSNLSEKLKAS 199
                            D +  + NG +  +G  ++        L   YK   ++ ++  
Sbjct: 186 ILVS--SHNMLEVEFLCDRIALIHNGTIVETGTVEE--------LKERYK---AQNIEEV 232

Query: 200 FQEV 203
           F+EV
Sbjct: 233 FEEV 236

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 57.3 bits (138), Expect = 5e-10
 Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 70/234 (29%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETR-GNIDYNNNPLSRTVKRKTGFVAHSNV 69
           G++  I+GP+G GK+TL   + G  +   G     N D  N   +            +  
Sbjct: 30  GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 89

Query: 70  FYLHLTVTETLVFIALFRL----------------------------------------- 88
               +TV E L+   +                                            
Sbjct: 90  PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 149

Query: 89  -----PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL-----LNSEGNSLHVGKGD 138
                 +K V   + L+ NP ++ +DEP +G+   +A  I      L ++G +       
Sbjct: 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGIT------- 202

Query: 139 GVMSYFVGIGFEPSAAMNPSDFLLDLANG--VVSGDPKDDQKALK--ETLISAY 188
                F+ I       +N  D L  + NG  +  G  +++ K +     ++  Y
Sbjct: 203 -----FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 251

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 45/165 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTV 57
           ILK I      GE +A +G SG GK+TL   +        T G I  + + +      ++
Sbjct: 33  ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSL 90

Query: 58  KRKTGFVAHSNVFYLHLTVTETLVF------------------IALF--RLPIK------ 91
           + + G V   N+ +   TV E ++                      F   LP        
Sbjct: 91  RNQIGLVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 149

Query: 92  ------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                       R+S A+  L NP +L LDE  S LD      I 
Sbjct: 150 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 41/158 (25%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETR---GNIDYNNNPLSRTVKRKTGFVAHSNV 69
           G+++ ++G +G GKTT  + + G +   + +      D  N P     +     V     
Sbjct: 32  GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR 91

Query: 70  FYLHLTVTETLVFIALFRLPIK---------------------------------RVSRA 96
            +  LTV E L+  A  R   +                                  ++  
Sbjct: 92  IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151

Query: 97  QELLINPSLLFLDEPASGLDSTIAKQI-----LLNSEG 129
           + L+  P LL +DEP+ GL   +  ++      +N EG
Sbjct: 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 33/152 (21%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTL---------PT----TLGGR-------- 36
           +LK I    +L    GE+LAI G +G GKT+L          +       GR        
Sbjct: 51  VLKNI----NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 106

Query: 37  -LSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLP---IKR 92
            +  G  + NI +  +      K                    T++      L      R
Sbjct: 107 WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 166

Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           +S A+ +  +  L  LD P   LD    +Q+ 
Sbjct: 167 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 198

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 42/152 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS-------RTVKRKTGFVA 65
           G++  ++G SG GK+TL   +        T G++  +   L+          +R+ G + 
Sbjct: 31  GQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELTKARRQIGMIF 88

Query: 66  HSNVFYLHLTVTETLVF-------------------IALFRLP--------------IKR 92
                    TV   +                     ++L  L                +R
Sbjct: 89  QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 148

Query: 93  VSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
           V+ A+ L  NP +L  DE  S LD    + IL
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSIL 180

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.8 bits (121), Expect = 7e-08
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--RTVKRKTGFVAHSNVF 70
            +   +LGP+G GK+     + G +     RG +  N   ++     +R  GFV      
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYAL 81

Query: 71  YLHLTVTETLVFIALFRLPIKRVSRAQELL 100
           + HL+V   + +       ++R  R +E+ 
Sbjct: 82  FPHLSVYRNIAYGLRNVERVERDRRVREMA 111

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.6 bits (121), Expect = 9e-08
 Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 48/167 (28%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID--YNNNPLSR 55
            L+ I    +L    G+ +A++G SG GK+T+ + +       E    +D          
Sbjct: 30  ALRNI----NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85

Query: 56  TVKRKTGFVAHSNVFYLHLTVTETLVFIA--------------------LFRLPIK---- 91
           +++ +   V+ +   +                                 + ++       
Sbjct: 86  SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI 145

Query: 92  --------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                         R++ A+ LL +  +L LDE  S LD+   + I 
Sbjct: 146 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 42/151 (27%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTVKRKTGFVAHSN 68
           GE+L ++GP+G GK+TL   + G  S    +G+I +   PL       +     +++   
Sbjct: 25  GEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 81

Query: 69  VFYLHLTVTETLVFIA---------------------------------LFRLPIKR--V 93
                  V   L                                       R+ +    +
Sbjct: 82  TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 141

Query: 94  SRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
               +      LL LDEP + LD      + 
Sbjct: 142 QITPQANPAGQLLLLDEPMNSLDVAQQSALD 172

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 45/165 (27%)

Query: 2   ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS----RTV 57
           IL  I      GE++ I+G SG GK+TL   +          G +  + + L+      +
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLALADPNWL 75

Query: 58  KRKTGFVAHSNVFYLHLTVTE----------------------TLVFIALFRLPIK---- 91
           +R+ G V   +   L+ ++ +                         FI+  R        
Sbjct: 76  RRQVGVV-LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVG 134

Query: 92  ------------RVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                       R++ A+ L+ NP +L  DE  S LD      I+
Sbjct: 135 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 49/203 (24%), Positives = 72/203 (35%), Gaps = 46/203 (22%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG--RLSTGETRGN---IDYNNNPLSRTVKRKTGFVAHS 67
           GE   ILGPSG GKTT    + G    STGE   +   +  N   +     RK G V  +
Sbjct: 31  GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90

Query: 68  NVFYLHLTVTETLVFIALFRLPIK--RVSRAQELL------------------------- 100
              Y +LT  E + F        K     R +E+                          
Sbjct: 91  WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150

Query: 101 ------INPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAA 154
                  +PSLL LDEP S LD+ +       +    +    G  +    + +  +P+  
Sbjct: 151 LARALVKDPSLLLLDEPFSNLDARMRDSA--RALVKEVQSRLGVTL----LVVSHDPADI 204

Query: 155 MNPSDFLLDLANGVV--SGDPKD 175
              +D +  L  G +   G P+D
Sbjct: 205 FAIADRVGVLVKGKLVQVGKPED 227

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 52/169 (30%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--- 54
           IL+ I    S       ++A  GPSG GK+T+ + L        T G I  +  P+    
Sbjct: 17  ILRDI----SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNIS 70

Query: 55  -RTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI----------------------- 90
               + + GFV+  +              +                              
Sbjct: 71  LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130

Query: 91  ---------------KRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL 124
                          +R++ A+  L NP +L LDE  + LDS     + 
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 41/198 (20%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE +  +GPSG GK+TL   + G  +       I       +   +R  G V  S   Y 
Sbjct: 26  GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 85

Query: 73  HLTVTETLVFI-----------------ALFRLPI----------------KRVSRAQEL 99
           HL+V E + F                      L +                +RV+  + L
Sbjct: 86  HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL 145

Query: 100 LINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSD 159
           +  PS+  LDEP S LD+ +  Q+    E + LH   G  ++     +  +   AM  +D
Sbjct: 146 VAEPSVFLLDEPLSNLDAALRVQM--RIEISRLHKRLGRTMIY----VTHDQVEAMTLAD 199

Query: 160 FLLDLANGVV--SGDPKD 175
            ++ L  G V   G P +
Sbjct: 200 KIVVLDAGRVAQVGKPLE 217

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 38/195 (19%)

Query: 13  GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYL 72
           GE   ILGP+G GKT     + G       R  +D  +       K    FV  +   + 
Sbjct: 26  GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85

Query: 73  HLT-------------------VTETLVFIALF----RLPI-------KRVSRAQELLIN 102
           H+                    V +T   + +     R P+       +RV+ A+ L+ N
Sbjct: 86  HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN 145

Query: 103 PSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLL 162
           P +L LDEP S LD    +        + LH      V+     I  + + A   +D + 
Sbjct: 146 PKILLLDEPLSALDPRTQENA--REMLSVLHKKNKLTVLH----ITHDQTEARIMADRIA 199

Query: 163 DLANGVV--SGDPKD 175
            + +G +   G P++
Sbjct: 200 VVMDGKLIQVGKPEE 214

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 54/170 (31%)

Query: 2   ILKGIRGVSSL----GELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS--- 54
           +L+G+    +     GE+ A++GP+G GK+T+   L        T G +  +  PL    
Sbjct: 29  VLQGL----TFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPLPQYE 82

Query: 55  -RTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRVSRAQE--------------- 98
            R + R+   V          ++ E + +    +  ++ ++ A                 
Sbjct: 83  HRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY 141

Query: 99  ------------------------LLINPSLLFLDEPASGLDSTIAKQIL 124
                                   L+  P +L LD+  S LD+    Q+ 
Sbjct: 142 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 191

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 47/204 (23%)

Query: 13  GELLAILGPSGRGKTTLPTTLGG-------RLSTGETRGNIDYNNNPLSRTVKRKTGFVA 65
           GE + +LGPSG GKTT    + G       ++  G+           +    +       
Sbjct: 29  GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88

Query: 66  HSNVFYLHLTVTETLVFIALFRLPIK--------------------------------RV 93
              ++            + L ++P +                                RV
Sbjct: 89  SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV 148

Query: 94  SRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGNSLHVGKGDGVMSYFVGIGFEPSA 153
           +  + ++  P +  +DEP S LD+ +  ++   +E   L    G       + +  +   
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRM--RAELKKLQRQLGVTT----IYVTHDQVE 202

Query: 154 AMNPSDFLLDLANGVV--SGDPKD 175
           AM   D +  +  GV+   G P +
Sbjct: 203 AMTMGDRIAVMNRGVLQQVGSPDE 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.98
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.98
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.96
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.96
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.28
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.76
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.65
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.52
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.4
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.39
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.38
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.38
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.35
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.3
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.29
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.21
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.16
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.14
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.11
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.09
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.09
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.09
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.07
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.05
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.04
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.0
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.0
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.98
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.96
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.93
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.91
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.87
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.84
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.76
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.75
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.75
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.75
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.69
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.69
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.68
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.67
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.65
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.58
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.57
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.57
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.57
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.56
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.55
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.55
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.54
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.54
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.54
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.52
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.51
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.5
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.49
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.44
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.43
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.42
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.41
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.4
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.36
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.34
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.32
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.32
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.31
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.3
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.3
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.28
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.28
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.23
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.19
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.19
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.19
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.16
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.12
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.1
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.08
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.05
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.02
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.99
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.96
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.9
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.88
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.86
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.82
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.82
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.81
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.76
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.72
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.68
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.68
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.67
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.66
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.62
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.62
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.62
d1okkd2	207	GTPase domain of the signal recognition particle r	95.62
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.6
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.59
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.56
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.56
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.52
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.48
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.48
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.46
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.42
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.39
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.38
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.37
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.34
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.31
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.28
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.26
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.2
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.18
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.18
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.17
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.12
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.09
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.05
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.02
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.91
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.9
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.9
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.89
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.88
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.87
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.87
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.85
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.82
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.78
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.73
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.73
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.73
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.71
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.71
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.62
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.58
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.56
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.55
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.54
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.53
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.52
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.5
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.48
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.46
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.45
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.44
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.42
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.42
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.36
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.3
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.3
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.28
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.24
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.2
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.18
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.16
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.11
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.07
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.98
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.96
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.92
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.9
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.82
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.81
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.77
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.55
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.5
d2qy9a2	211	GTPase domain of the signal recognition particle r	93.43
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.43
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.35
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.24
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.2
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.95
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.93
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.62
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.45
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.39
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.11
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.03
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.99
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	91.81
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.75
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	91.3
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.01
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.88
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.77
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.66
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.3
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	90.29
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.28
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.24
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.2
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	90.11
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.08
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.05
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.86
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.19
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.82
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.41
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.31
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.31
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.1
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.86
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.43
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.19
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.71
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	83.57
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	83.42
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	83.01
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	82.73
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	81.79
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	81.4
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	81.02
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.77

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.7e-36  Score=281.72  Aligned_cols=137  Identities=28%  Similarity=0.460  Sum_probs=120.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.++|+++.+  ..++.+|||+|+..+++++||+||
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~en   92 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN   92 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccchhHhcceeeccccccCccccHHHH
Confidence            6899999999999999999999999999999999987  478999999998754  345689999999999999999999


Q ss_pred             HHHHHHcCC-c-----------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH------
Q 048308           80 LVFIALFRL-P-----------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI------  123 (413)
Q Consensus        80 l~f~~~~~~-~-----------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i------  123 (413)
                      +.|....+. +                             +||++|||+|+.+|++|+|||||+|||+.++.++      
T Consensus        93 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~  172 (229)
T d3d31a2          93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV  172 (229)
T ss_dssp             HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHH
Confidence            998765321 1                             1899999999999999999999999999999887      


Q ss_pred             --------------------------HHhcCCcEEEecCcchH
Q 048308          124 --------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 --------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                                ++|++|+++..|+++++
T Consensus       173 l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el  215 (229)
T d3d31a2         173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI  215 (229)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred             HHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence                                      46677777777776665

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-36  Score=281.84  Aligned_cols=120  Identities=32%  Similarity=0.483  Sum_probs=91.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.+||++..+  ..+|.+|||+|++.+++++||+||
T Consensus        15 ~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~en   92 (232)
T d2awna2          15 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAEN   92 (232)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------
T ss_pred             EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHH
Confidence            7899999999999999999999999999999999987  478999999998753  346779999999999999999999


Q ss_pred             HHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           80 LVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        80 l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +.|....+. +                                +||++|||+|+.+|++|+|||||+|||+.++.++
T Consensus        93 i~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i  169 (232)
T d2awna2          93 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM  169 (232)
T ss_dssp             ------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence            998754321 1                                1899999999999999999999999999999887

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.2e-36  Score=280.68  Aligned_cols=137  Identities=28%  Similarity=0.485  Sum_probs=113.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTET   79 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~   79 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+++  +.+|+|.+||+++..  ..+|.+|||+|++.+++++||+||
T Consensus        21 al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en   98 (239)
T d1v43a3          21 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYEN   98 (239)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHH
T ss_pred             EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHH
Confidence            7999999999999999999999999999999999997  478999999998753  446679999999999999999999


Q ss_pred             HHHHHHcC-------------------C--------------chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH---
Q 048308           80 LVFIALFR-------------------L--------------PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI---  123 (413)
Q Consensus        80 l~f~~~~~-------------------~--------------~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i---  123 (413)
                      +.|....+                   +              .+||++|||+|+.+|++|+|||||+|||+.++.++   
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~l  178 (239)
T d1v43a3          99 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE  178 (239)
T ss_dssp             HHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHH
Confidence            98754321                   1              12899999999999999999999999999999887   


Q ss_pred             -----------------------------HHhcCCcEEEecCcchH
Q 048308          124 -----------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 -----------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                                   ++|++|+++..|+++++
T Consensus       179 l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el  224 (239)
T d1v43a3         179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV  224 (239)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence                                         36677777777776665

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.7e-35  Score=275.50  Aligned_cols=120  Identities=28%  Similarity=0.490  Sum_probs=107.4

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+++  +.+|+|.++|.+...        ..++.+|||+|++.++|+
T Consensus        18 al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~   95 (240)
T d1g2912          18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH   95 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred             EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccchhhhcccccccceecccchhhcch
Confidence            7899999999999999999999999999999999987  478999999987631        125679999999999999


Q ss_pred             CCHHHHHHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048308           74 LTVTETLVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIA  120 (413)
Q Consensus        74 lTv~e~l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~  120 (413)
                      +||+||+.+....+. +                                +||++|||+|+.+|++|+|||||+|||+.++
T Consensus        96 ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~  175 (240)
T d1g2912          96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR  175 (240)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred             hhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHH
Confidence            999999998765431 1                                1899999999999999999999999999999


Q ss_pred             HHH
Q 048308          121 KQI  123 (413)
Q Consensus       121 ~~i  123 (413)
                      .++
T Consensus       176 ~~i  178 (240)
T d1g2912         176 VRM  178 (240)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1e-35  Score=278.26  Aligned_cols=137  Identities=31%  Similarity=0.472  Sum_probs=119.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.++|++...       ..++.+|||+|+..++|++
T Consensus        20 aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~l   97 (242)
T d1oxxk2          20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL   97 (242)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred             EEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCchhhcchhhccceEEeccccccccc
Confidence            6899999999999999999999999999999999987  478999999987631       2356799999999999999


Q ss_pred             CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+||+.|....+ .+                                +|||+|||+|+.+|++|++||||+|||+.++.
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~  177 (242)
T d1oxxk2          98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD  177 (242)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred             cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHH
Confidence            9999998865331 11                                18999999999999999999999999999998


Q ss_pred             HH--------------------------------HHhcCCcEEEecCcchH
Q 048308          122 QI--------------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       122 ~i--------------------------------~ll~~G~~v~~G~~~~~  140 (413)
                      ++                                ++|++|+++..|+++++
T Consensus       178 ~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el  228 (242)
T d1oxxk2         178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL  228 (242)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            87                                46778888888887766

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-35  Score=275.23  Aligned_cols=137  Identities=24%  Similarity=0.341  Sum_probs=120.6

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-------hccccEEEEecCCccCCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-------TVKRKTGFVAHSNVFYLHL   74 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~v~q~~~~~~~l   74 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.++|+++..       ..++.+|||+|+..+++.+
T Consensus        20 al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~   97 (240)
T d3dhwc1          20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR   97 (240)
T ss_dssp             EEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTS
T ss_pred             EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCc
Confidence            6999999999999999999999999999999999987  478999999998632       2346799999999999999


Q ss_pred             CHHHHHHHHHHcC-Cc--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048308           75 TVTETLVFIALFR-LP--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAK  121 (413)
Q Consensus        75 Tv~e~l~f~~~~~-~~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~  121 (413)
                      ||+||+.+....+ .+                                +|||+|||+|+.+|++|++||||+|||+.++.
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~  177 (240)
T d3dhwc1          98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR  177 (240)
T ss_dssp             BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhh
Confidence            9999999976542 21                                18999999999999999999999999999998


Q ss_pred             HH--------------------------------HHhcCCcEEEecCcchH
Q 048308          122 QI--------------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       122 ~i--------------------------------~ll~~G~~v~~G~~~~~  140 (413)
                      ++                                ++|++|+++..|+++++
T Consensus       178 ~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei  228 (240)
T d3dhwc1         178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  228 (240)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            88                                47778888888887765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.4e-34  Score=269.13  Aligned_cols=154  Identities=29%  Similarity=0.437  Sum_probs=126.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--------hccccEEEEecCCccCCC
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--------TVKRKTGFVAHSNVFYLH   73 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~v~q~~~~~~~   73 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+.+  +.+|+|.++|+++..        ..++.+|||+|+..++|.
T Consensus        20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~   97 (230)
T d1l2ta_          20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL   97 (230)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcC
Confidence            6999999999999999999999999999999999987  478999999998642        123569999999999999


Q ss_pred             CCHHHHHHHHHHcCC----------------------c---------------hhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048308           74 LTVTETLVFIALFRL----------------------P---------------IKRVSRAQELLINPSLLFLDEPASGLD  116 (413)
Q Consensus        74 lTv~e~l~f~~~~~~----------------------~---------------~krvsia~~l~~~p~llllDEPtsgLD  116 (413)
                      +||+||+.+....+.                      +               +|||+|||||+.+|++|+|||||+|||
T Consensus        98 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD  177 (230)
T d1l2ta_          98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD  177 (230)
T ss_dssp             SCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             ccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccC
Confidence            999999998764321                      0               189999999999999999999999999


Q ss_pred             HHHHHHHH-----Hhc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccC
Q 048308          117 STIAKQIL-----LNS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVS  170 (413)
Q Consensus       117 ~~~~~~i~-----ll~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~  170 (413)
                      +.++.+++     +.+ .|.++-.-+            |+.... ..||+++.+.+|++.
T Consensus       178 ~~~~~~i~~~l~~l~~~~g~tii~vT------------Hd~~~a-~~~drv~~m~~G~Iv  224 (230)
T d1l2ta_         178 SKTGEKIMQLLKKLNEEDGKTVVVVT------------HDINVA-RFGERIIYLKDGEVE  224 (230)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEC------------SCHHHH-TTSSEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCEEEEEC------------CCHHHH-HhCCEEEEEECCEEE
Confidence            99999984     223 487766633            333322 357777777777654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.2e-34  Score=268.76  Aligned_cols=121  Identities=30%  Similarity=0.486  Sum_probs=108.2

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh---hccccEEEEecCCccCCCCCHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR---TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      ++|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|++..+   ..++.++||+|++.+++++||.
T Consensus        16 ~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~   93 (238)
T d1vpla_          16 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGI   93 (238)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHH
T ss_pred             EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHH
Confidence            37999999999999999999999999999999999997  478999999997643   4567899999999999999999


Q ss_pred             HHHHHHHHcCC-c--------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           78 ETLVFIALFRL-P--------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        78 e~l~f~~~~~~-~--------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      |++.|...++. +                                +||++||++|+++|++++|||||+|||+.++.++
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i  172 (238)
T d1vpla_          94 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV  172 (238)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH
Confidence            99988754311 0                                1899999999999999999999999999999888

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=2.1e-34  Score=270.41  Aligned_cols=158  Identities=23%  Similarity=0.418  Sum_probs=123.5

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCCH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|++...     ..+..++|++|+..+++.+||
T Consensus        21 al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv   98 (240)
T d1ji0a_          21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV   98 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred             EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHHHHHHhcccccCcccccCCcccH
Confidence            7899999999999999999999999999999999987  478999999998742     123459999999999999999


Q ss_pred             HHHHHHHHHcCCc---------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           77 TETLVFIALFRLP---------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        77 ~e~l~f~~~~~~~---------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +||+.+....+.+                                 +||++||++|+.+|++|+|||||+|||+.++.++
T Consensus        99 ~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i  178 (240)
T d1ji0a_          99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV  178 (240)
T ss_dssp             HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHH
Confidence            9999775432211                                 1899999999999999999999999999999988


Q ss_pred             H-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          124 L-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       124 ~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      .     +-++|.++..-+            |+.+.....||+++.+.+|++...+
T Consensus       179 ~~~i~~l~~~g~til~~t------------H~l~~~~~~~drv~vl~~G~iv~~g  221 (240)
T d1ji0a_         179 FEVIQKINQEGTTILLVE------------QNALGALKVAHYGYVLETGQIVLEG  221 (240)
T ss_dssp             HHHHHHHHHTTCCEEEEE------------SCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEe------------CCHHHHHHhCCEEEEEECCEEEEEc
Confidence            2     334565544422            2222233446666666666554433

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.4e-33  Score=267.26  Aligned_cols=120  Identities=28%  Similarity=0.460  Sum_probs=106.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----------------hccccEEEE
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----------------TVKRKTGFV   64 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------------~~~~~~~~v   64 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+++  +.+|+|.++|+++..                 ..++++|||
T Consensus        17 al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~v   94 (258)
T d1b0ua_          17 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV   94 (258)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred             EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEE
Confidence            7999999999999999999999999999999999987  478999999987631                 234679999


Q ss_pred             ecCCccCCCCCHHHHHHHHHHc--CCc---------------------------------hhHHHHHHHHhhCCCEEEEe
Q 048308           65 AHSNVFYLHLTVTETLVFIALF--RLP---------------------------------IKRVSRAQELLINPSLLFLD  109 (413)
Q Consensus        65 ~q~~~~~~~lTv~e~l~f~~~~--~~~---------------------------------~krvsia~~l~~~p~llllD  109 (413)
                      +|+..+++.+||.||+.+....  +.+                                 +|||.|||+|+.+|++|++|
T Consensus        95 fQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilD  174 (258)
T d1b0ua_          95 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD  174 (258)
T ss_dssp             CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             EechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEec
Confidence            9999999999999999876321  111                                 18999999999999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 048308          110 EPASGLDSTIAKQI  123 (413)
Q Consensus       110 EPtsgLD~~~~~~i  123 (413)
                      |||+|||+.++.++
T Consensus       175 EPT~gLD~~~~~~i  188 (258)
T d1b0ua_         175 EPTSALDPELVGEV  188 (258)
T ss_dssp             STTTTSCHHHHHHH
T ss_pred             cccccCCHHHHHHH
Confidence            99999999999988

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.8e-34  Score=271.84  Aligned_cols=159  Identities=25%  Similarity=0.414  Sum_probs=135.3

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh-----hccccEEEEecCCccCCCCC
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR-----TVKRKTGFVAHSNVFYLHLT   75 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~v~q~~~~~~~lT   75 (413)
                      ++|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.++|+++..     ..++.++|++|+..+++++|
T Consensus        18 ~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~lt   95 (254)
T d1g6ha_          18 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT   95 (254)
T ss_dssp             EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSB
T ss_pred             EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCe
Confidence            37999999999999999999999999999999999987  478999999998742     23446999999999999999


Q ss_pred             HHHHHHHHHHc--------------------------------CCc--------------hhHHHHHHHHhhCCCEEEEe
Q 048308           76 VTETLVFIALF--------------------------------RLP--------------IKRVSRAQELLINPSLLFLD  109 (413)
Q Consensus        76 v~e~l~f~~~~--------------------------------~~~--------------~krvsia~~l~~~p~llllD  109 (413)
                      |+||+.++...                                ++.              +||+.|||+|+.+|++|+||
T Consensus        96 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilD  175 (254)
T d1g6ha_          96 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD  175 (254)
T ss_dssp             HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             eeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhc
Confidence            99999764211                                110              18999999999999999999


Q ss_pred             CCCCCCCHHHHHHHH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCC
Q 048308          110 EPASGLDSTIAKQIL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDP  173 (413)
Q Consensus       110 EPtsgLD~~~~~~i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~  173 (413)
                      |||+|||+.++.++.     +-++|.+|..            +.|+.++..+.||+++.+.+|++...+
T Consensus       176 EPt~gLD~~~~~~i~~~i~~l~~~g~til~------------vsHdl~~~~~~~Drv~vm~~G~iv~~g  232 (254)
T d1g6ha_         176 EPIAGVAPGLAHDIFNHVLELKAKGITFLI------------IEHRLDIVLNYIDHLYVMFNGQIIAEG  232 (254)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEE------------ECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEE------------EeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence            999999999999884     3357888776            468888889999999999999876544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=8.6e-34  Score=264.70  Aligned_cols=133  Identities=26%  Similarity=0.442  Sum_probs=114.3

Q ss_pred             cceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh--hccccEEEEecCCccCCCCCHHHHHHH
Q 048308            5 GIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR--TVKRKTGFVAHSNVFYLHLTVTETLVF   82 (413)
Q Consensus         5 ~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~f   82 (413)
                      |||+++. ||+++|+||||||||||+|+|+|+++  +.+|+|.+||.++.+  ..++.+|||+|++.++|++||+||+.|
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~   93 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY   93 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence            7888885 68999999999999999999999997  478999999998764  446789999999999999999999988


Q ss_pred             HHHc-----------------CCc--------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH--------
Q 048308           83 IALF-----------------RLP--------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI--------  123 (413)
Q Consensus        83 ~~~~-----------------~~~--------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i--------  123 (413)
                      +...                 ++.              +|||+|||||+.+|++|+|||||+|||+.++..+        
T Consensus        94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~  173 (240)
T d2onka1          94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ  173 (240)
T ss_dssp             TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHH
Confidence            5321                 110              1899999999999999999999999999999887        


Q ss_pred             ------------------------HHhcCCcEEEecCcchH
Q 048308          124 ------------------------LLNSEGNSLHVGKGDGV  140 (413)
Q Consensus       124 ------------------------~ll~~G~~v~~G~~~~~  140 (413)
                                              ++|++|+++..|+++++
T Consensus       174 ~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el  214 (240)
T d2onka1         174 REFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL  214 (240)
T ss_dssp             HHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHH
Confidence                                    46677888877777666

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=264.51  Aligned_cols=158  Identities=25%  Similarity=0.372  Sum_probs=123.7

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|+++  +.+|+|.+||.++..    ..++.++||+|++.+|+ .||+
T Consensus        29 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~  105 (251)
T d1jj7a_          29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQ  105 (251)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHH
T ss_pred             eEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEecchhhhHHHHHHhhhccccccccC-cchh
Confidence            7999999999999999999999999999999999998  478999999998743    45678999999998875 6999


Q ss_pred             HHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      ||+.+....                     ++|                  +||++|||+|+.+|++++||||||+||+.
T Consensus       106 eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~  185 (251)
T d1jj7a_         106 ENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN  185 (251)
T ss_dssp             HHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred             hhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChh
Confidence            999874210                     111                  18999999999999999999999999999


Q ss_pred             HHHHHH--H---hc-CCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          119 IAKQIL--L---NS-EGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       119 ~~~~i~--l---l~-~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      ++.+++  +   .. .|+++..=+            |+...... ||+++.+.+|++...++.
T Consensus       186 ~~~~i~~~l~~l~~~~~~Tvi~it------------H~l~~~~~-aDrI~vl~~G~iv~~Gt~  235 (251)
T d1jj7a_         186 SQLQVEQLLYESPERYSRSVLLIT------------QHLSLVEQ-ADHILFLEGGAIREGGTH  235 (251)
T ss_dssp             HHHHHHHHHHTCGGGGGCEEEEEC------------SCHHHHHT-CSEEEEEETTEEEEEECH
T ss_pred             hHHHHHHHHHHHhhhcCCEEEEEe------------CCHHHHHh-CCEEEEEECCEEEEECCH
Confidence            998883  1   11 266655532            23222122 777777777776654443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.98  E-value=3.1e-34  Score=269.51  Aligned_cols=161  Identities=26%  Similarity=0.394  Sum_probs=129.6

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTV   76 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv   76 (413)
                      .+|+|||++++|||++||+||||||||||+|+|+|.++|  .+|+|.+||.++.+    .+++.++||+|++.+|+. ||
T Consensus        16 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti   92 (242)
T d1mv5a_          16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TI   92 (242)
T ss_dssp             CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EH
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEeccccHHHHHhheEEEccccccCCc-ch
Confidence            379999999999999999999999999999999999984  68999999998753    457789999999988876 99


Q ss_pred             HHHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048308           77 TETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDS  117 (413)
Q Consensus        77 ~e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~  117 (413)
                      +||+.+....                     .+|                  +||++|||||+.+|++++||||||+||+
T Consensus        93 ~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~  172 (242)
T d1mv5a_          93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS  172 (242)
T ss_dssp             HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred             hhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCH
Confidence            9998653210                     011                  1899999999999999999999999999


Q ss_pred             HHHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcch
Q 048308          118 TIAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQ  177 (413)
Q Consensus       118 ~~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~  177 (413)
                      .++.+++    -+.+|+++..-+            |+.... ..||+++.+.+|++...++.++
T Consensus       173 ~~~~~i~~~l~~l~~~~Tvi~it------------H~l~~~-~~~D~i~vl~~G~iv~~G~~~e  223 (242)
T d1mv5a_         173 ESESMVQKALDSLMKGRTTLVIA------------HRLSTI-VDADKIYFIEKGQITGSGKHNE  223 (242)
T ss_dssp             SSCCHHHHHHHHHHTTSEEEEEC------------CSHHHH-HHCSEEEEEETTEECCCSCHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEE------------CCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence            9988773    234687776633            333222 2488999999998877666544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=3.3e-33  Score=262.12  Aligned_cols=158  Identities=25%  Similarity=0.387  Sum_probs=128.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||+++++||.+||+||||||||||+|+|+|+++  +.+|+|.+||+++..    .+++.++||+|++.+| +.||+
T Consensus        18 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~   94 (241)
T d2pmka1          18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSII   94 (241)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHH
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEecccchhhhhceEEEEecccccC-Ccccc
Confidence            7999999999999999999999999999999999997  478999999998753    4577899999998877 56999


Q ss_pred             HHHHHHHHc--------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIALF--------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~~--------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+....                    ++|                  +||++|||+|+.+|++++||||||+||+.+
T Consensus        95 eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~  174 (241)
T d2pmka1          95 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES  174 (241)
T ss_dssp             HHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred             ccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHH
Confidence            999764210                    011                  289999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      +..++    -+.+|+++..            +.|+.... ..||+++.+.+|++...++.
T Consensus       175 ~~~i~~~l~~l~~~~Tvi~------------itH~l~~~-~~~D~i~vl~~G~Iv~~G~~  221 (241)
T d2pmka1         175 EHVIMRNMHKICKGRTVII------------IAHRLSTV-KNADRIIVMEKGKIVEQGKH  221 (241)
T ss_dssp             HHHHHHHHHHHHTTSEEEE------------ECSSGGGG-TTSSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHhCCCEEEE------------EECCHHHH-HhCCEEEEEECCEEEEECCH
Confidence            99883    2346777666            33554433 34888888888887655443

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=2.8e-32  Score=257.67  Aligned_cols=159  Identities=28%  Similarity=0.378  Sum_probs=129.0

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||+++++||.+||+||||||||||+|+|+|+++  +.+|+|.++|.++..    ..++.++||+|++.+|+ .||+
T Consensus        33 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~  109 (255)
T d2hyda1          33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVK  109 (255)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHH
T ss_pred             ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEEcccCCHHHhhheeeeeeccccCCC-CCHH
Confidence            7999999999999999999999999999999999997  478999999998753    46778999999988775 6999


Q ss_pred             HHHHHHHH-------------c-------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048308           78 ETLVFIAL-------------F-------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTI  119 (413)
Q Consensus        78 e~l~f~~~-------------~-------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~  119 (413)
                      ||+.+...             .       ++|                  +||++|||+|+.+|++++||||||+||+.+
T Consensus       110 eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t  189 (255)
T d2hyda1         110 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES  189 (255)
T ss_dssp             HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred             HHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            99976410             0       111                  289999999999999999999999999999


Q ss_pred             HHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcc
Q 048308          120 AKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDD  176 (413)
Q Consensus       120 ~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~  176 (413)
                      +..++    -+.+|+++..            +.|+.... ..||+++.+.+|++...++.+
T Consensus       190 ~~~i~~~l~~l~~~~TvI~------------itH~~~~~-~~~D~ii~l~~G~iv~~G~~~  237 (255)
T d2hyda1         190 ESIIQEALDVLSKDRTTLI------------VAHRLSTI-THADKIVVIENGHIVETGTHR  237 (255)
T ss_dssp             HHHHHHHHHHHTTTSEEEE------------ECSSGGGT-TTCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHHHhcCCEEEE------------EeCCHHHH-HhCCEEEEEECCEEEEECCHH
Confidence            98883    2456776655            33554433 458999999888876555433

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=6.5e-32  Score=255.23  Aligned_cols=158  Identities=21%  Similarity=0.340  Sum_probs=127.1

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      +|+|||+++++||.+||+||||||||||+++|+|+++  +.+|+|.+||.+..+    .+++.++||+|++.++. .|++
T Consensus        30 ~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~  106 (253)
T d3b60a1          30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVA  106 (253)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHH
T ss_pred             eeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcccchhhhhhhhheEEEEeeccccCC-cchh
Confidence            7999999999999999999999999999999999997  478999999998753    45678999999998774 5999


Q ss_pred             HHHHHHHHc---------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048308           78 ETLVFIALF---------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDST  118 (413)
Q Consensus        78 e~l~f~~~~---------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~  118 (413)
                      +|+.+....                     ++|                  +||++|||+|+.+|++++||||||+||+.
T Consensus       107 ~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~  186 (253)
T d3b60a1         107 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE  186 (253)
T ss_dssp             HHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred             hhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHH
Confidence            998764210                     011                  28999999999999999999999999999


Q ss_pred             HHHHHH----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCc
Q 048308          119 IAKQIL----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKD  175 (413)
Q Consensus       119 ~~~~i~----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~  175 (413)
                      ++..++    -+.+|+++..            +.|+.... ..||.++.+.+|++...++.
T Consensus       187 ~~~~i~~~l~~l~~~~Tvi~------------itH~l~~~-~~~D~v~vl~~G~Iv~~G~~  234 (253)
T d3b60a1         187 SERAIQAALDELQKNRTSLV------------IAHRLSTI-EQADEIVVVEDGIIVERGTH  234 (253)
T ss_dssp             HHHHHHHHHHHHHTTSEEEE------------ECSCGGGT-TTCSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHhccCCEEEE------------EECCHHHH-HhCCEEEEEECCEEEEECCH
Confidence            998884    2245676655            34554433 34888888888887655443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.2e-31  Score=253.24  Aligned_cols=111  Identities=29%  Similarity=0.431  Sum_probs=97.5

Q ss_pred             CccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHH
Q 048308            1 MILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETL   80 (413)
Q Consensus         1 ~iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l   80 (413)
                      ++|+|||+++++||++||+||||||||||+|+|+|.++  +.+|+|.++|         +++|++|+..+++. ||+||+
T Consensus        50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~eni  117 (281)
T d1r0wa_          50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RVSFCSQFSWIMPG-TIKENI  117 (281)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS---------CEEEECSSCCCCSE-EHHHHH
T ss_pred             eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC---------EEEEEeccccccCc-eeeccc
Confidence            37999999999999999999999999999999999998  4789999998         38999999988764 999999


Q ss_pred             HHHHHc-------------------CCc------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           81 VFIALF-------------------RLP------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        81 ~f~~~~-------------------~~~------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .|....                   +++                  +||++|||+|+.+|++++|||||+|||+.+..++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i  197 (281)
T d1r0wa_         118 IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV  197 (281)
T ss_dssp             TTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHH
Confidence            764210                   111                  2899999999999999999999999999998877

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=2.4e-30  Score=236.37  Aligned_cols=120  Identities=31%  Similarity=0.475  Sum_probs=107.8

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLV   81 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~   81 (413)
                      +|+|||+++++||+++|+||||||||||+|+|+|.++  +.+|+|.+||++..+ .+..++|++|+..++..+|++|++.
T Consensus        16 vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~-~~~~i~~~~~~~~~~~~~t~~~~l~   92 (200)
T d1sgwa_          16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-VKGKIFFLPEEIIVPRKISVEDYLK   92 (200)
T ss_dssp             EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG-GGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred             EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhH-hcCcEEEEeecccCCCCcCHHHHHH
Confidence            7999999999999999999999999999999999997  478999999998765 4567999999999999999999998


Q ss_pred             HHHHcCCc------------------------------hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048308           82 FIALFRLP------------------------------IKRVSRAQELLINPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus        82 f~~~~~~~------------------------------~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      +.+.+...                              +||++||++|+.+|++++|||||+|||+.++.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~  165 (200)
T d1sgwa_          93 AVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL  165 (200)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHH
T ss_pred             HHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHH
Confidence            86543211                              18999999999999999999999999999998873

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.1e-29  Score=236.90  Aligned_cols=172  Identities=23%  Similarity=0.358  Sum_probs=130.9

Q ss_pred             ccccceeEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccCh----hccccEEEEecCCccCCCCCHH
Q 048308            2 ILKGIRGVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSR----TVKRKTGFVAHSNVFYLHLTVT   77 (413)
Q Consensus         2 iL~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~v~q~~~~~~~lTv~   77 (413)
                      .|+|||+++++||+++|+||||||||||+|+|+|+.+   .+|+|.++|++...    ..+...+|++|+.......++.
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~   90 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW   90 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence            6899999999999999999999999999999999753   56999999997643    2344689999998777788999


Q ss_pred             HHHHHHHH--------------cCCc--------------hhHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHH
Q 048308           78 ETLVFIAL--------------FRLP--------------IKRVSRAQELLI-------NPSLLFLDEPASGLDSTIAKQ  122 (413)
Q Consensus        78 e~l~f~~~--------------~~~~--------------~krvsia~~l~~-------~p~llllDEPtsgLD~~~~~~  122 (413)
                      +++.+...              +++.              +||+.||++|+.       +|++++|||||+|||+.++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~  170 (231)
T d1l7vc_          91 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA  170 (231)
T ss_dssp             HHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred             HHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHH
Confidence            98876421              1111              289999999997       779999999999999999988


Q ss_pred             HH-----HhcCCcEEEecCcchHhHHHHhcCCCCCCCCChhHHHHHhhCCccCCCCCcchHHHHHHHHHHH
Q 048308          123 IL-----LNSEGNSLHVGKGDGVMSYFVGIGFEPSAAMNPSDFLLDLANGVVSGDPKDDQKALKETLISAY  188 (413)
Q Consensus       123 i~-----ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (413)
                      +.     +.++|.+|..-+            |+.......||+++.+.+|+....++.++....+.+.+.|
T Consensus       171 i~~~i~~l~~~g~tii~vt------------Hdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~~l~~~y  229 (231)
T d1l7vc_         171 LDKILSALCQQGLAIVMSS------------HDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAY  229 (231)
T ss_dssp             HHHHHHHHHHTTCEEEECC------------CCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEEe------------CCHHHHHHHCCEEEEEECCEEEEECCHHHHhCChHHHHhh
Confidence            83     446788776633            4444445667888888888877655433322334444443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.09  E-value=1.5e-10  Score=100.10  Aligned_cols=114  Identities=17%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccc----------cEEEEecCCccCC----C-CCHHHHH
Q 048308           16 LAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKR----------KTGFVAHSNVFYL----H-LTVTETL   80 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~----------~~~~v~q~~~~~~----~-lTv~e~l   80 (413)
                      ++|+||||||||||+++|+|.++  ...|.+...+.+.....++          ...+.........    . -...+.+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF   80 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchh
Confidence            78999999999999999999886  3568887766543221111          0111111111110    0 0113333


Q ss_pred             HHHHHcCCchhHHHHHHHHhhCCCEEEEeCCCCCCC--HHHHHHHH-Hhc-CCcEEEe
Q 048308           81 VFIALFRLPIKRVSRAQELLINPSLLFLDEPASGLD--STIAKQIL-LNS-EGNSLHV  134 (413)
Q Consensus        81 ~f~~~~~~~~krvsia~~l~~~p~llllDEPtsgLD--~~~~~~i~-ll~-~G~~v~~  134 (413)
                      .....   ..+|..+++++..+|+++++|||....+  ......+. ++. .+.++-.
T Consensus        81 ~~~~~---~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~  135 (178)
T d1ye8a1          81 EELAI---PILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVA  135 (178)
T ss_dssp             HHHHH---HHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEE
T ss_pred             hhhhh---hhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEE
Confidence            32221   2378999999999999999999865433  23333332 334 4666544

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.65  E-value=0.00017  Score=64.52  Aligned_cols=94  Identities=21%  Similarity=0.202  Sum_probs=54.9

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC---CCC----CeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHH
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL---STG----ETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIAL   85 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~---~~~----~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~   85 (413)
                      ++++.|.|||.+||||+||.++-..   +.|    ..+.++.        .+.+....+..+|.+...++-     |.+.
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~--------~~d~I~~~~~~~d~~~~~~St-----F~~e  101 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLP--------LFDGIYTRIGASDDLAGGKST-----FMVE  101 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEEC--------CCSEEEEECCC------CCSH-----HHHH
T ss_pred             CcEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEe--------ecceEEEEECCCccccCCccH-----HHHh
Confidence            4699999999999999999874211   111    1112221        122233444444443333332     2222


Q ss_pred             cCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           86 FRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        86 ~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      +    +|++-....+++.+++++||+.+|=|+.....+
T Consensus       102 l----~~~~~il~~~~~~sLvliDE~~~gT~~~eg~al  135 (224)
T d1ewqa2         102 M----EEVALILKEATENSLVLLDEVGRGTSSLDGVAI  135 (224)
T ss_dssp             H----HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHH
T ss_pred             H----HHHHHHhccCCCCcEEeecccccCcchhhhcch
Confidence            2    555555556678899999999999999887766

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.52  E-value=2.1e-05  Score=66.21  Aligned_cols=27  Identities=30%  Similarity=0.494  Sum_probs=24.8

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .|++++|.|||||||||+.+.|+.++.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=2.6e-05  Score=67.09  Aligned_cols=26  Identities=35%  Similarity=0.635  Sum_probs=23.8

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |.+++|+||||||||||.+.|..+.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            89999999999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=4.4e-05  Score=68.56  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=25.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID   47 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~   47 (413)
                      +|+.++++|+||+|||||+|.|.+...  -..|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence            589999999999999999999988654  2345554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=3.9e-05  Score=64.15  Aligned_cols=23  Identities=52%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|.|++|||||||++.|+..+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=4e-05  Score=64.32  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=25.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +.+.++.|+|||||||||+.+.|+.++.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788999999999999999999998763

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=2.9e-05  Score=70.24  Aligned_cols=95  Identities=18%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC---CCC---C-eeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL---STG---E-TRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA   84 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~---~~~---~-~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~   84 (413)
                      .+.++.|.|||.+||||+||.++-..   +.|   + .+.++.        .+.+....+..+|.+...++     .|.+
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~--------~~d~I~~~~~~~d~~~~~~S-----~F~~  106 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIG--------PIDRIFTRVGAADDLASGRS-----TFMV  106 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEEC--------CCCEEEEEEC----------------CHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecc--------cchhheeEEccCcccccchh-----HHHH
Confidence            35789999999999999999885321   111   0 111111        11222333433333222111     1222


Q ss_pred             HcCCchhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048308           85 LFRLPIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQI  123 (413)
Q Consensus        85 ~~~~~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i  123 (413)
                      .+    +|++-...-+++.+++++||+.+|=|+.....+
T Consensus       107 E~----~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l  141 (234)
T d1wb9a2         107 EM----TETANILHNATEYSLVLMDEIGRGTSTYDGLSL  141 (234)
T ss_dssp             HH----HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred             HH----HHHHHHHHhcccccEEeecccccCCChhhhhHH
Confidence            22    455545555777789999999999998877665

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=3.5e-06  Score=72.12  Aligned_cols=30  Identities=17%  Similarity=0.018  Sum_probs=25.1

Q ss_pred             ccceeEEecCcEEEEECCCCCCHHHHHHHHh
Q 048308            4 KGIRGVSSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus         4 ~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      ++.++.+.+| +++|+|||||||||+|++|.
T Consensus        16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             EEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred             eeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4555666665 99999999999999999995

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.29  E-value=5.8e-05  Score=63.26  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|-++.|+|+|||||||+.+.|+.++.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999999997763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.21  E-value=0.00042  Score=65.34  Aligned_cols=95  Identities=20%  Similarity=0.263  Sum_probs=53.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc-ccC-hhccccEEEEecCCccCCCCCHHHHHHHHHHcCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN-PLS-RTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRL   88 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~   88 (413)
                      +.|.-+.|.|+.|||||||+++|.+..++...  -|.+... +.. +..++.+....+     ...|..+.+.       
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~r--ivtiEd~~El~l~~~~~~~~~~~~-----~~~~~~~ll~-------  229 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER--IISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCLK-------  229 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCC--EEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHHHH-------
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccccc--eeeccchhhhhcccccccceeccc-----cchhHHHHHH-------
Confidence            44566899999999999999999998865332  2333221 111 111122222222     1234444433       


Q ss_pred             chhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhcCCc
Q 048308           89 PIKRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNSEGN  130 (413)
Q Consensus        89 ~~krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~~G~  130 (413)
                              .+|=.+|+.++++|--.+ +.  ...+-.+..|+
T Consensus       230 --------~~lR~~pd~iivgEiR~~-ea--~~~l~a~~tGh  260 (323)
T d1g6oa_         230 --------SCLRMRPDRIILGELRSS-EA--YDFYNVLCSGH  260 (323)
T ss_dssp             --------HHTTSCCSEEEESCCCST-HH--HHHHHHHHTTC
T ss_pred             --------HHhccCCCcccCCccCch-hH--HHHHHHHHhcC
Confidence                    234468999999999743 43  33344455553

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=6.1e-05  Score=63.33  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..++|.||+|||||||.+.|+..+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.14  E-value=6.5e-05  Score=63.35  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=26.7

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEEEECC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLST-GETRGNIDYNN   50 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g   50 (413)
                      .+++|+|++|||||||++.|..++.. +..-|.|..++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            37899999999999999988776542 33345554443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.11  E-value=9.6e-05  Score=61.78  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=23.7

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..++.|.|+|||||||+.+.|+.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.00011  Score=67.89  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=21.7

Q ss_pred             EecCc-EEEEECCCCCCHHHHHHHHhC
Q 048308           10 SSLGE-LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        10 ~~~Ge-~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++.+. +++|+|||||||||+|++|+-
T Consensus        20 i~f~~~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          20 IGFSDRVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EECCSSEEEEECCTTTCSTHHHHHHHH
T ss_pred             EeCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            44443 999999999999999999944

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.09  E-value=0.00014  Score=60.92  Aligned_cols=28  Identities=29%  Similarity=0.500  Sum_probs=24.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|-.++|.||+||||||+.+.|+.++.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999999998764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.09  E-value=0.00013  Score=59.96  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.5

Q ss_pred             cEEEEECCCCCCHHHHHHHHhC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      +++.|.|+||||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.07  E-value=9.8e-05  Score=61.38  Aligned_cols=25  Identities=40%  Similarity=0.631  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .++.|.||+||||||+.+.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999997764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.05  E-value=0.00011  Score=63.36  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||+|.|.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            39999999999999999999863

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.04  E-value=5.3e-05  Score=68.22  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=22.6

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEE
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNID   47 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~   47 (413)
                      +|+.++++|+||+|||||+|.|.|...  -..|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence            578899999999999999999998643  2345554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00018  Score=63.49  Aligned_cols=27  Identities=33%  Similarity=0.461  Sum_probs=23.9

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .|.++.|+||||||||||.+.|....+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            489999999999999999999976643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.00  E-value=0.00015  Score=60.34  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+||+||||||+.+.|+.++
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999998765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00015  Score=60.76  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..+.|.||+|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3578999999999999999998764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0002  Score=68.50  Aligned_cols=26  Identities=23%  Similarity=0.500  Sum_probs=22.3

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHh
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      .+.++.+++|+|||||||||++.+|+
T Consensus        21 ~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          21 GFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             ECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             eCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            34546699999999999999999984

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00026  Score=60.49  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=26.3

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .|=+++|+++.|.||+|+|||||+.-++..
T Consensus        17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          17 QGGIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            357899999999999999999998877654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.91  E-value=0.00021  Score=63.21  Aligned_cols=23  Identities=39%  Similarity=0.713  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|+|+.|||||||++.|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999997533

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00024  Score=58.18  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+.|+||+||||||+.+.|+.++.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.84  E-value=0.00029  Score=59.16  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+++|.|++||||||+.+.|+.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999987653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00019  Score=61.13  Aligned_cols=27  Identities=37%  Similarity=0.407  Sum_probs=23.9

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .|-++.|.|+|||||||+.+.|+.++.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577899999999999999999987653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.75  E-value=0.00028  Score=59.72  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|+|||||+|.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.75  E-value=0.00033  Score=60.24  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..+++|+||+||||||+.+.|+..+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.75  E-value=0.00031  Score=59.76  Aligned_cols=23  Identities=48%  Similarity=0.557  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|-|++|||||||.+.|+..+
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.69  E-value=0.00036  Score=60.14  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=24.8

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.+.++.|+||+||||||+.+.|+..+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567899999999999999999998765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.69  E-value=0.00023  Score=60.67  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +||+|++++|||||+|.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00042  Score=59.71  Aligned_cols=26  Identities=27%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +-.+++|+||+||||||+.+.|+..+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999876

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00045  Score=58.11  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +++|+|.+|+|||||+|.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999986

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.00046  Score=58.02  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||+|.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0004  Score=57.51  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++++|++|+|||||+|.|.|..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.0004  Score=59.97  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|||||||+|.|.|..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.58  E-value=0.00061  Score=58.34  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=23.1

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|=-++|+||+||||||..+.|+..+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            456678899999999999999999654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.00054  Score=58.17  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|.+|+|||||+|.|.|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00051  Score=59.06  Aligned_cols=23  Identities=43%  Similarity=0.629  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|+||||||||||++.|+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            68999999999999999977654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0006  Score=57.72  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|++|+|||||+|.|.|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999863

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.56  E-value=0.00045  Score=56.58  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|++|+|||||++.+.+.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00057  Score=58.56  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|+||+||||||..+.|+..+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57999999999999999998654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.55  E-value=0.00053  Score=57.94  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|+||+||||||+.+.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.54  E-value=0.00038  Score=58.38  Aligned_cols=23  Identities=39%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00047  Score=56.32  Aligned_cols=22  Identities=41%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|++|+|||||++.+.+..
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999998753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00063  Score=58.31  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .++.|+||||+|||||++.|....+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            5789999999999999999986543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.52  E-value=0.00058  Score=57.25  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|+|++||||||+.+.||..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5788999999999999999876

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.00041  Score=58.87  Aligned_cols=22  Identities=18%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +||+|++|+|||||+|.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999998853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.50  E-value=0.00052  Score=58.80  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.|+||+||||||+.+.|+..+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.49  E-value=0.00053  Score=56.45  Aligned_cols=22  Identities=41%  Similarity=0.448  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|++|+|||||++.+.+..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999997753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.44  E-value=0.00063  Score=57.33  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+.|+|++||||||+.+.||.++.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999997653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.43  E-value=0.00059  Score=61.12  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ...+.+.||||||||||.++|++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34688999999999999999998764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00072  Score=58.37  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+||||||||||.+.|....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.00083  Score=57.14  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++-+++.++|++||||||+.+-++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4557999999999999999998853

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.40  E-value=0.0024  Score=61.70  Aligned_cols=116  Identities=18%  Similarity=0.262  Sum_probs=65.9

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCch
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI   90 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~   90 (413)
                      .++-++.+.||.||||||++.++...+.... .--+.+. .|+......... ++-+..  ...+      |..      
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~-~~i~tiE-dPiE~~~~~~~q-~~v~~~--~~~~------~~~------  218 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSE-RNILTVE-DPIEFDIDGIGQ-TQVNPR--VDMT------FAR------  218 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT-SCEEEEE-SSCCSCCSSSEE-EECBGG--GTBC------HHH------
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCC-ceEEEec-cCcccccCCCCe-eeecCC--cCCC------HHH------
Confidence            5677999999999999999999977543211 1112332 232211111111 100000  0112      222      


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHhc-CCcEEEecC----cchHhHHHHhcCC
Q 048308           91 KRVSRAQELLINPSLLFLDEPASGLDSTIAKQILLNS-EGNSLHVGK----GDGVMSYFVGIGF  149 (413)
Q Consensus        91 krvsia~~l~~~p~llllDEPtsgLD~~~~~~i~ll~-~G~~v~~G~----~~~~~~~f~~~g~  149 (413)
                         .+..+|=.||++++.+|..   |..++...+-.. .||.|+..=    +.++..-+.++|.
T Consensus       219 ---~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~  276 (401)
T d1p9ra_         219 ---GLRAILRQDPDVVMVGEIR---DLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGI  276 (401)
T ss_dssp             ---HHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTC
T ss_pred             ---HHHHHHhhcCCEEEecCcC---ChHHHHHHHHHHhcCCeEEEEeccCchHhhhhhhhhccc
Confidence               2333566899999999997   777777665444 698887643    3344555555554

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.39  E-value=0.00077  Score=56.46  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +.++|++||||||+.+.|+.++.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45779999999999999998764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.00088  Score=57.59  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+++++|.||||||||.+.|+..+
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.34  E-value=0.00092  Score=56.78  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|+||+||||||+.+.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.32  E-value=0.00023  Score=62.88  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=31.8

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLS   54 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~   54 (413)
                      +.|-++-+.|.|||||||+.+.|..++......-.+.++|....
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            57889999999999999999999865421011235677776543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00045  Score=58.10  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|++++|||||+|.|.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998853

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.00097  Score=58.37  Aligned_cols=30  Identities=27%  Similarity=0.344  Sum_probs=25.8

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .|=+++|+++.|.||+|||||||..-++-.
T Consensus        28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          28 GGGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999999998877543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.30  E-value=0.00092  Score=56.67  Aligned_cols=22  Identities=41%  Similarity=0.733  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|+||+||||||+.+.|+..+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998765

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.30  E-value=0.00091  Score=55.59  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++++|++|||||||++.+.+..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6899999999999999998854

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.001  Score=58.00  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++||-|++||||||+.+.|+..+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999987653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.28  E-value=0.001  Score=58.05  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++|.||+||||||..+.|+..+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.23  E-value=0.001  Score=55.91  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++.|.|++||||||+.+.|+.++.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.00099  Score=56.35  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|+||+||||||..+.|+..+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999998654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.19  E-value=0.0011  Score=57.03  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+||+||||||+.+.|+..+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0012  Score=57.14  Aligned_cols=24  Identities=42%  Similarity=0.646  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++|.||+||||||+-+.|+.++.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            889999999999999999998764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0012  Score=55.99  Aligned_cols=22  Identities=36%  Similarity=0.735  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|+||+||||||+.+.|+..+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999998764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.12  E-value=0.0012  Score=59.96  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|.+|+|||||+|.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999999974

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.11  E-value=0.0012  Score=55.14  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++|+|.+|||||||++.|.+..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998853

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.10  E-value=0.0048  Score=54.27  Aligned_cols=83  Identities=16%  Similarity=0.192  Sum_probs=43.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCch-
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPI-   90 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~-   90 (413)
                      .-.+++++||+|+||||.+==||.++..                 ..++++.+.-|..-..  -+++--.|+..++.|- 
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~-----------------~g~kV~lit~Dt~R~g--a~eQL~~~a~~l~v~~~   71 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKK-----------------KGFKVGLVGADVYRPA--ALEQLQQLGQQIGVPVY   71 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHH-----------------TTCCEEEEECCCSSHH--HHHHHHHHHHHHTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH-----------------CCCceEEEEeeccccc--hhHHHHHhccccCccee
Confidence            4468899999999999986656644320                 1123555544322111  1223333455555432 


Q ss_pred             ------h-----HHHHHHHHhhCCCEEEEeCCCCCC
Q 048308           91 ------K-----RVSRAQELLINPSLLFLDEPASGL  115 (413)
Q Consensus        91 ------k-----rvsia~~l~~~p~llllDEPtsgL  115 (413)
                            .     +-.+..+...+-++++.|  |+|.
T Consensus        72 ~~~~~~~~~~~~~~a~~~~~~~~~d~IlID--TaGr  105 (211)
T d1j8yf2          72 GEPGEKDVVGIAKRGVEKFLSEKMEIIIVD--TAGR  105 (211)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred             ecccchhhhHHHHHHHHHhhccCCceEEEe--cCCc
Confidence                  1     113344456788999999  7775

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.08  E-value=0.0013  Score=55.92  Aligned_cols=22  Identities=41%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +||+|++.||||||+|.|.+..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999999753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0012  Score=57.07  Aligned_cols=22  Identities=27%  Similarity=0.229  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|++|+|||||++.+.+.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.02  E-value=0.0016  Score=61.12  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=22.7

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .|..++.+.||||+|||.|.++|++..
T Consensus       121 ~~~g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         121 YASGMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cCCceEEEECCCCccHHHHHHHHHHHh
Confidence            355577778999999999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.99  E-value=0.00039  Score=57.46  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|++|+|||||+|.|.|.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999885

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.96  E-value=0.0019  Score=56.95  Aligned_cols=27  Identities=33%  Similarity=0.464  Sum_probs=23.3

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHH
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTL   33 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l   33 (413)
                      .|=+++|+++.|.||+|||||||.--+
T Consensus        30 ~GGlp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          30 GGGIETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHH
T ss_pred             cCCccCCEEEEEEcCCCCCHHHHHHHH
Confidence            355899999999999999999996644

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.90  E-value=0.0013  Score=59.54  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=26.6

Q ss_pred             cccceeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            3 LKGIRGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         3 L~~vs~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      |+++.+=+.|||++.|.|+||+|||||+.-++-
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344444479999999999999999999877763

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.88  E-value=0.0016  Score=56.77  Aligned_cols=29  Identities=21%  Similarity=0.131  Sum_probs=25.1

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      .|-+++|+++.|.|++|+|||||..-++-
T Consensus        28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999999776654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0022  Score=56.93  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..+.|-||+|+||||+.++|+....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999998654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.82  E-value=0.0019  Score=60.02  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=21.7

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      |+.-+++.||||+|||+|.|+||...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            34455689999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.82  E-value=0.0016  Score=55.74  Aligned_cols=26  Identities=27%  Similarity=0.195  Sum_probs=22.8

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .=+++|-|+.||||||+++.|+..++
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34899999999999999999987664

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.81  E-value=0.0018  Score=53.76  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++++|++|+|||||++.+.+.
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999988653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.76  E-value=0.0027  Score=55.92  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=25.1

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      .|=+++|+++.|.|+||||||||+.-++-
T Consensus        20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          20 GGGFFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999999877654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.73  E-value=0.0024  Score=56.15  Aligned_cols=23  Identities=43%  Similarity=0.595  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.|.||+|+||||+.++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.0023  Score=56.37  Aligned_cols=24  Identities=38%  Similarity=0.636  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -+.+.||||+||||+.++|+..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            478999999999999999987654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.68  E-value=0.0024  Score=54.49  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      +++|.|++||||||+.+.|..
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.012  Score=51.00  Aligned_cols=112  Identities=18%  Similarity=0.268  Sum_probs=57.3

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCchhHH
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRV   93 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~krv   93 (413)
                      .-..|+||+|.|||++..-|+.++..    |++       .+..+...-|..+-..+....+-+..+         ++|+
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~~----~~v-------p~~L~~~~i~~ld~~~LiAg~~~rG~~---------E~rl  103 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRIIN----GEV-------PEGLKGRRVLALDMGALVAGAKYRGEF---------EERL  103 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH----TCS-------CGGGTTCEEEEECHHHHHTTTCSHHHH---------HHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHHh----CCC-------CHHHcCceEEEeeHHHHhccCCccHHH---------HHHH
Confidence            45789999999999999999987531    111       112222222222222222222222211         1344


Q ss_pred             -HHHHHHhhCC-C-EEEEeCCCCCCCHHHH------HHHH--HhcCCc--EEEecCcchHhHHHH
Q 048308           94 -SRAQELLINP-S-LLFLDEPASGLDSTIA------KQIL--LNSEGN--SLHVGKGDGVMSYFV  145 (413)
Q Consensus        94 -sia~~l~~~p-~-llllDEPtsgLD~~~~------~~i~--ll~~G~--~v~~G~~~~~~~~f~  145 (413)
                       .+-.++.... + ||++||.-+=+++.++      .+++  .|..|.  +|-..++++...+++
T Consensus       104 ~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e  168 (195)
T d1jbka_         104 KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIE  168 (195)
T ss_dssp             HHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTT
T ss_pred             HHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHH
Confidence             4555665443 3 8899998554433222      1222  455664  555555556656554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.67  E-value=0.003  Score=55.94  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ..+.|.||+|+||||+++.++..+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0022  Score=56.37  Aligned_cols=29  Identities=28%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      .|=+++|+++.|.|+||||||||.-.++.
T Consensus        31 gGGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          31 GGGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             cCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999999877753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.62  E-value=0.0024  Score=55.32  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=23.6

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHH
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTL   33 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l   33 (413)
                      +|=+++|+++.|-|+||+|||||..-+
T Consensus        20 ~GGi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          20 HGGLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             TSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             cCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence            456999999999999999999997544

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.62  E-value=0.0023  Score=53.52  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0025  Score=59.94  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ..-.++|.||+|||||||++.|...
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHH
Confidence            4668999999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.62  E-value=0.0027  Score=55.76  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=20.8

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.+++++||+|+||||.+==||.++
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999865566543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.0024  Score=56.44  Aligned_cols=23  Identities=43%  Similarity=0.722  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -+.+-||+|+||||+.+++++..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999999764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.59  E-value=0.0029  Score=56.01  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+..++|.||+|+|||||++.++...
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            56789999999999999999887544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.0026  Score=53.15  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|++|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.56  E-value=0.0087  Score=52.60  Aligned_cols=28  Identities=25%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++-.+++++||+|+||||.+==||.++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455688999999999999865565443

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0028  Score=53.00  Aligned_cols=21  Identities=43%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|++|+|||||++.+.+.
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0024  Score=56.04  Aligned_cols=27  Identities=22%  Similarity=0.170  Sum_probs=24.2

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+.+++|=|+.||||||+++.|+..++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.48  E-value=0.014  Score=50.88  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +...+++++||+|+||||.+-=||.++
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345788999999999999877676554

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.003  Score=60.93  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|.+|+|||||+|+|.|..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999964

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0027  Score=52.75  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++++|++|+|||||++.+.+.
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0032  Score=52.17  Aligned_cols=20  Identities=15%  Similarity=0.370  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|++|+|||||++.+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.38  E-value=0.0038  Score=58.48  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ..-.++|.||+|||||||++.|...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.004  Score=54.43  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=24.1

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.|-+++|-|+.||||||+.+.|+..+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999988765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0043  Score=52.46  Aligned_cols=21  Identities=43%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|++|+|||||++.+.+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0035  Score=52.65  Aligned_cols=20  Identities=30%  Similarity=0.582  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|++|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.31  E-value=0.0039  Score=56.00  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .-+.+.||+|+|||++.++||+..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            457899999999999999999754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.28  E-value=0.0038  Score=55.13  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++||+|.+.||||||+++|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0046  Score=51.41  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|.+|+|||||++.+.+.
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999987753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.0042  Score=54.30  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.+-||+|+||||+.++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.0035  Score=51.97  Aligned_cols=20  Identities=30%  Similarity=0.503  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|++|+|||||++.+.+
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0041  Score=52.05  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|++|+|||||++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            68999999999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0055  Score=51.05  Aligned_cols=22  Identities=36%  Similarity=0.684  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++|+|++|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6899999999999999998864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0056  Score=55.37  Aligned_cols=27  Identities=30%  Similarity=0.607  Sum_probs=22.6

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++..-+.+.||+|+|||+|.++|+...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            344567899999999999999999754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0039  Score=52.04  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++.+.+
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0039  Score=51.77  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      -++|+|++|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0055  Score=53.03  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .|.+++|=|+.||||||+.+.|+..+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0056  Score=51.18  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|++|+|||||++.+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0041  Score=51.92  Aligned_cols=20  Identities=30%  Similarity=0.557  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|++|+|||||++.+.+
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0049  Score=51.13  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|.+|+|||||++.+.+.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=0.0049  Score=52.05  Aligned_cols=20  Identities=45%  Similarity=0.579  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0051  Score=51.02  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.94  E-value=0.0036  Score=52.79  Aligned_cols=22  Identities=41%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++++|++|+|||||++.+.+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0071  Score=50.57  Aligned_cols=22  Identities=32%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++++|.+|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            6899999999999999998754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.0056  Score=50.50  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0055  Score=51.46  Aligned_cols=20  Identities=35%  Similarity=0.589  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.90  E-value=0.0053  Score=55.66  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=24.5

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++..-+.|-||+|+|||+|.+++++...
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34556688999999999999999998764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.89  E-value=0.0046  Score=56.40  Aligned_cols=91  Identities=22%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EEEECCcc-cChhccccEEEEecCCccCCCCCHHHHHHHHHH
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRG-NIDYNNNP-LSRTVKRKTGFVAHSNVFYLHLTVTETLVFIAL   85 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~-~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~   85 (413)
                      |=++.|.++.+.||+|+|||||+-.++...+  ...| -|+++... .++.+-+.+|.-+.+-.++...+++|.+.    
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q--~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~----  128 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALE----  128 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHH--HTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHH----
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHHh--cCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHH----
Confidence            5689999999999999999999655543322  1112 45666654 23322222332111111223345666543    


Q ss_pred             cCCchhHHHHHHHHhh--CCCEEEEeCCCC
Q 048308           86 FRLPIKRVSRAQELLI--NPSLLFLDEPAS  113 (413)
Q Consensus        86 ~~~~~krvsia~~l~~--~p~llllDEPts  113 (413)
                               ++..|+.  +++++++|=-++
T Consensus       129 ---------~~~~l~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         129 ---------IADMLIRSGALDIVVIDSVAA  149 (269)
T ss_dssp             ---------HHHHHHHTTCEEEEEEECSTT
T ss_pred             ---------HHHHHHhcCCCCEEEEecccc
Confidence                     2333332  457778876654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.88  E-value=0.0066  Score=52.51  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++||.|+.||||||..+.+..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999963

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.006  Score=56.74  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|-|++||||||+.+.|...+
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHH
Confidence            89999999999999999997665

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.005  Score=50.82  Aligned_cols=20  Identities=40%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++.+.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.85  E-value=0.0065  Score=54.54  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .-+.+.||+|+|||+|.++|++...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcC
Confidence            3578999999999999999997653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.0067  Score=52.93  Aligned_cols=22  Identities=41%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.+-||+|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6789999999999999998653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.78  E-value=0.0052  Score=56.01  Aligned_cols=92  Identities=18%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc-cChhccccEEEEecCCccCCCCCHHHHHHHHHHc
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP-LSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALF   86 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~   86 (413)
                      |=++.|.++-|-||+|||||||.-.++...+. .....++++... .++.+.+..|.=+.+-.+.+.-+++|-+.     
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk-~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~-----  125 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE-----  125 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-----
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHHHHh-CCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHH-----
Confidence            67899999999999999999998777665331 111245666542 22222222222111112223335555443     


Q ss_pred             CCchhHHHHHHHHhh--CCCEEEEeCCCC
Q 048308           87 RLPIKRVSRAQELLI--NPSLLFLDEPAS  113 (413)
Q Consensus        87 ~~~~krvsia~~l~~--~p~llllDEPts  113 (413)
                              ++..|+.  +++++++|=-++
T Consensus       126 --------~~~~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         126 --------IMELLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             --------HHHHHHTTTCCSEEEEECTTT
T ss_pred             --------HHHHHHhcCCCcEEEEecccc
Confidence                    3344442  578999997765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.73  E-value=0.0078  Score=49.86  Aligned_cols=20  Identities=25%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++-+.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.73  E-value=0.0047  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -++++|++|+|||||++.+.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37799999999999999987543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0084  Score=53.65  Aligned_cols=24  Identities=33%  Similarity=0.574  Sum_probs=21.0

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHh
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~   34 (413)
                      .||+++.|.|++|+|||||+-.|+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            469999999999999999976554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0067  Score=50.32  Aligned_cols=20  Identities=30%  Similarity=0.383  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0057  Score=51.03  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.71  E-value=0.0057  Score=52.26  Aligned_cols=20  Identities=35%  Similarity=0.574  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|++|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.62  E-value=0.0049  Score=51.55  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=8.5

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0063  Score=51.00  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|.+|+|||||++.+.+.
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.58  E-value=0.0058  Score=54.24  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ++.+.||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45566999999999999998765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=0.0068  Score=52.97  Aligned_cols=27  Identities=37%  Similarity=0.394  Sum_probs=25.0

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .|.+++|=|+.||||||+.+.|+.++.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            689999999999999999999998775

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.55  E-value=0.0045  Score=57.01  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +++|-|+|||||||+.+.|...+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            89999999999999999987654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.54  E-value=0.0085  Score=52.15  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +.+-||+|+||||+.++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6799999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0096  Score=51.60  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +++|.|..||||||..+.+..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999999643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.52  E-value=0.014  Score=49.64  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=23.6

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ..-.|.=++|.|+||+|||||...+..+
T Consensus        11 v~~~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          11 LEVFGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3347889999999999999998887654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.50  E-value=0.014  Score=49.69  Aligned_cols=30  Identities=33%  Similarity=0.272  Sum_probs=24.4

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +...-.|.=+++.|+||+|||||.-.+..+
T Consensus         8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_           8 VLVDIYGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            344567888999999999999998777654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.0082  Score=49.89  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++|+|++|+|||||++-+.+.
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999988753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.01  Score=53.38  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .=+.+-||+|+|||+|.+++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhC
Confidence            3478999999999999999998653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0082  Score=50.60  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|.+|+|||||++.+.+.
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3799999999999999987654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0074  Score=50.44  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++-+.+
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.0084  Score=49.74  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++-+.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.0079  Score=52.97  Aligned_cols=21  Identities=38%  Similarity=0.521  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +.|.||+|+||||+.++++..
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.0058  Score=51.07  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++++|++|+|||||++.+.+.
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999977553

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.0093  Score=49.53  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|++|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999997643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.011  Score=49.06  Aligned_cols=20  Identities=35%  Similarity=0.481  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.28  E-value=0.013  Score=48.90  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=25.1

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+||.+++|-|+=|||||||.|.++.-+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            4799999999999999999999997654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.24  E-value=0.0098  Score=49.47  Aligned_cols=21  Identities=24%  Similarity=0.388  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      -++|+|.+|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.20  E-value=0.013  Score=50.14  Aligned_cols=24  Identities=46%  Similarity=0.670  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++|-|.-||||||+++.|+.+++
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999987653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.015  Score=52.66  Aligned_cols=43  Identities=26%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCc
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNN   51 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~   51 (413)
                      |=+++|.++.|.||+|||||||+-.++...+. ...-.++++..
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~-~g~~~vyidtE   91 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAE   91 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEEccc
Confidence            67899999999999999999997666543221 11123556554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.16  E-value=0.011  Score=49.31  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++.+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.11  E-value=0.011  Score=54.62  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +||+|.|.+|||||+|+|+|-.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999999863

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.012  Score=49.64  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 048308           16 LAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~   34 (413)
                      +.|+|.+|+|||||++-+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6899999999999999883

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.98  E-value=0.017  Score=49.34  Aligned_cols=22  Identities=36%  Similarity=0.595  Sum_probs=20.2

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            6999999999999999999854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.96  E-value=0.018  Score=48.57  Aligned_cols=30  Identities=33%  Similarity=0.272  Sum_probs=24.8

Q ss_pred             eeEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            7 RGVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         7 s~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +...-.|.=++|.|+||+|||||.-.+..+
T Consensus         9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2           9 VLVDVYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            455678899999999999999998776554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.92  E-value=0.0056  Score=57.00  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           13 GELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        13 Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      |.-+.|.||+|+|||||+|.+++.++
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhCC
Confidence            34589999999999999999999876

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=0.015  Score=53.32  Aligned_cols=53  Identities=19%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHH
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIA   84 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~   84 (413)
                      +++|-|++|||||||.+.|...+.. .             ......+..++.||.+   +|-.|-..++.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~-~-------------~~~~~~v~~iS~DdfY---~t~~~r~~L~~   81 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLME-K-------------YGGEKSIGYASIDDFY---LTHEDQLKLNE   81 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH-H-------------HGGGSCEEEEEGGGGB---CCHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHH-H-------------hCCCcceEeeccCCCC---CCHHHHHHHhh
Confidence            8899999999999999887544310 0             0112346777888765   35455444444

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.016  Score=53.81  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.3

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +|...++++||+|+|||.|.+.||..+
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHhhc
Confidence            355578899999999999999999765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.013  Score=49.31  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhC
Q 048308           15 LLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      -++++|.+|+|||||++.+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999997755

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.013  Score=48.37  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++-+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.78  E-value=0.011  Score=57.63  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -+.++||+|||||-|.|.||+.+.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999999764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.014  Score=49.24  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|.+|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            79999999999999988754

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.55  E-value=0.013  Score=53.78  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|.|.+|||||+|+|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.50  E-value=0.017  Score=50.36  Aligned_cols=20  Identities=30%  Similarity=0.508  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 048308           15 LLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~   34 (413)
                      -+.|+|.+|+|||||++-+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999874

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.018  Score=50.37  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+++++||+|+||||.+==||.++
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999866666544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.015  Score=49.37  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++|+|++|+|||||++.+.+
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.018  Score=48.37  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|.+|+|||||++.+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999986644

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.019  Score=52.33  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      -+++|+||-++|||||||.|.|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~   57 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKK   57 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999998753

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.20  E-value=0.02  Score=52.37  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|.-+||||||+|+|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999963

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.95  E-value=0.021  Score=51.88  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .++|+|.-.||||||+|+|.|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            38899999999999999999963

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.93  E-value=0.022  Score=53.98  Aligned_cols=28  Identities=29%  Similarity=0.272  Sum_probs=25.2

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +++..+++.||+|+||||+.++|++.+.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            6677999999999999999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.62  E-value=0.025  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      -++|+|-|.+|||||+++|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.45  E-value=0.048  Score=51.93  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      ..|+|++|.|||++..-++.++
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999998888764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.029  Score=46.89  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      +.++|.+|+|||||++-+..
T Consensus         5 iv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999998854

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.11  E-value=0.037  Score=46.06  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHhC
Q 048308           16 LAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g   35 (413)
                      ++++|..|+|||||++-+..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999998754

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.03  E-value=0.037  Score=47.77  Aligned_cols=20  Identities=35%  Similarity=0.496  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 048308           15 LLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~   34 (413)
                      -++|+|..+||||||++.|.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            47999999999999999995

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.038  Score=50.52  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             EEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            9 VSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         9 ~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .+-.|+-.+|.|++|+|||||+..|+..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999998763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.033  Score=48.78  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ++.|-|.-|||||||++-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6889999999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.75  E-value=0.047  Score=47.63  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      .+++|.|+-||||||..+.|+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            37899999999999999999653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.30  E-value=0.05  Score=47.24  Aligned_cols=21  Identities=38%  Similarity=0.594  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +.|-||+|+|||-|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999999764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.055  Score=47.05  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+++|=|+-||||||+++.|+..+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            3688999999999999999987664

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.98  E-value=0.065  Score=48.30  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      +..+++|.|..|.|||||.+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4569999999999999999988643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.88  E-value=0.053  Score=48.96  Aligned_cols=19  Identities=47%  Similarity=0.770  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q 048308           15 LLAILGPSGRGKTTLPTTL   33 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l   33 (413)
                      .++|+|+.|||||||..+|
T Consensus         4 Nv~iiGh~~~GKTtL~e~l   22 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEAL   22 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHH
Confidence            4799999999999999998

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.77  E-value=0.097  Score=48.86  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHH
Q 048308          101 INPSLLFLDEPASGLDSTIAKQIL  124 (413)
Q Consensus       101 ~~p~llllDEPtsgLD~~~~~~i~  124 (413)
                      .++++++||||+++||+..+..+.
T Consensus       353 ~~~pililDE~d~~Ld~~~~~~~~  376 (427)
T d1w1wa_         353 QPSPFFVLDEVDAALDITNVQRIA  376 (427)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHH
Confidence            567899999999999999998884

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.66  E-value=0.053  Score=48.60  Aligned_cols=16  Identities=31%  Similarity=0.414  Sum_probs=13.6

Q ss_pred             EEEEECCCCCCHHHHH
Q 048308           15 LLAILGPSGRGKTTLP   30 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl   30 (413)
                      -+.|.|++||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4789999999999763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.30  E-value=0.05  Score=49.36  Aligned_cols=16  Identities=38%  Similarity=0.528  Sum_probs=13.6

Q ss_pred             EEEEECCCCCCHHHHH
Q 048308           15 LLAILGPSGRGKTTLP   30 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl   30 (413)
                      -+.|.|++||||||.|
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4779999999999764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.088  Score=45.24  Aligned_cols=23  Identities=30%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      -+.+-||+|+||||+.+.++..+
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHhc
Confidence            48899999999999999998754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.28  E-value=0.072  Score=49.13  Aligned_cols=41  Identities=29%  Similarity=0.349  Sum_probs=28.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcc
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNP   52 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~   52 (413)
                      +|.-...++||+|+|||.|.+.|+..+-. ....-+.+|...
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l~~-~~~~~~~~~~~~   91 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTE   91 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHHHS-SGGGEEEECTTT
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence            45557789999999999999999976521 122345555443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.24  E-value=0.11  Score=44.39  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           11 SLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +|.=-++|+|.-.+|||||++.|.|...
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence            4554589999999999999999998653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=0.062  Score=51.04  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=17.7

Q ss_pred             cEEEEECCCCCCHHHHHHHHh
Q 048308           14 ELLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~   34 (413)
                      ..++|+|++|||||++++.+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            348999999999999987554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.09  Score=46.00  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Q 048308           15 LLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .+.+-||+|+||||+.++++..+
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            46788999999999999987653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.08  E-value=0.067  Score=48.54  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHH---hCCCC
Q 048308           15 LLAILGPSGRGKTTLPTTL---GGRLS   38 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l---~g~~~   38 (413)
                      -++|+|..|||||||...|   +|..+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~   34 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH   34 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence            5899999999999999988   56554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.05  E-value=0.092  Score=47.36  Aligned_cols=111  Identities=22%  Similarity=0.284  Sum_probs=57.5

Q ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEEECCcccChhccccEEEEecCCccCCCCCHHHHHHHHHHcCCchhHH
Q 048308           14 ELLAILGPSGRGKTTLPTTLGGRLSTGETRGNIDYNNNPLSRTVKRKTGFVAHSNVFYLHLTVTETLVFIALFRLPIKRV   93 (413)
Q Consensus        14 e~~~ilG~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~f~~~~~~~~krv   93 (413)
                      .-..|+||+|+|||++..-++.++..    |++       .+..+...-+...-..+....+-+..+         .+|+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~----~~v-------p~~l~~~~i~~l~~~~liag~~~~g~~---------e~r~   99 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQ----GDV-------PEVMADCTIYSLDIGSLLAGTKYRGDF---------EKRF   99 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH----TCS-------CGGGTTCEEEECCCC---CCCCCSSCH---------HHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHh----CCc-------ccccccceeEEeeechHhccCccchhH---------HHHH
Confidence            46789999999999999999987531    111       111222222222222232222211111         1333


Q ss_pred             -HHHHHHhhCC-CEEEEeCCCCCC-------CHHHHHHHH--HhcCCcEEEec--CcchHhHHH
Q 048308           94 -SRAQELLINP-SLLFLDEPASGL-------DSTIAKQIL--LNSEGNSLHVG--KGDGVMSYF  144 (413)
Q Consensus        94 -sia~~l~~~p-~llllDEPtsgL-------D~~~~~~i~--ll~~G~~v~~G--~~~~~~~~f  144 (413)
                       .+..++...+ .++++||.-+=+       ++..+..++  .|+.|.+-..|  ++++...++
T Consensus       100 ~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~  163 (268)
T d1r6bx2         100 KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF  163 (268)
T ss_dssp             HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCC
T ss_pred             HHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHH
Confidence             4566666666 567799964422       233445554  66778654444  444444444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.86  E-value=0.1  Score=49.11  Aligned_cols=28  Identities=36%  Similarity=0.640  Sum_probs=22.3

Q ss_pred             EecCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           10 SSLGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+++. ...+||+|+|||-|.|.||....
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence            34554 56679999999999999997653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=88.19  E-value=0.12  Score=44.28  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGG   35 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g   35 (413)
                      |.=-++|+|.-++|||||++.|.+
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHH
Confidence            333489999999999999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.82  E-value=0.15  Score=45.70  Aligned_cols=27  Identities=26%  Similarity=0.217  Sum_probs=23.1

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      .+--++|+|-+-+|||||+|.|.|+..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccce
Confidence            344589999999999999999999753

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.41  E-value=0.18  Score=45.60  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=24.5

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGR   36 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~   36 (413)
                      ..+-.|+-.+|.|++|+|||||+.-++..
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            34678999999999999999997777543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.13  Score=47.19  Aligned_cols=20  Identities=45%  Similarity=0.720  Sum_probs=18.1

Q ss_pred             ecCcEEEEECCCCCCHHHHH
Q 048308           11 SLGELLAILGPSGRGKTTLP   30 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl   30 (413)
                      +.|++.+..|.||+|||||=
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            57899999999999999974

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.15  Score=47.70  Aligned_cols=40  Identities=18%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-hc-CCcEEEecCcchHhH
Q 048308          102 NPSLLFLDEPASGLDSTIAKQILL-NS-EGNSLHVGKGDGVMS  142 (413)
Q Consensus       102 ~p~llllDEPtsgLD~~~~~~i~l-l~-~G~~v~~G~~~~~~~  142 (413)
                      +.+++++||-.- +|......++- +. +.++|+.|++.+..+
T Consensus       261 ~~d~lIIDEaSm-v~~~l~~~ll~~~~~~~~lILvGD~~QLpp  302 (359)
T d1w36d1         261 HLDVLVVDEASM-IDLPMMSRLIDALPDHARVIFLGDRDQLAS  302 (359)
T ss_dssp             SCSEEEECSGGG-CBHHHHHHHHHTCCTTCEEEEEECTTSGGG
T ss_pred             ccceeeehhhhc-cCHHHHHHHHHHhcCCCEEEEECChhhccC
Confidence            468999999755 88776666642 23 458999999877644

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.10  E-value=0.066  Score=41.72  Aligned_cols=21  Identities=24%  Similarity=0.050  Sum_probs=18.0

Q ss_pred             EecCcEEEEECCCCCCHHHHH
Q 048308           10 SSLGELLAILGPSGRGKTTLP   30 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKSTLl   30 (413)
                      +++|+.+.|.+|+|||||...
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            468999999999999999543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.86  E-value=0.13  Score=47.43  Aligned_cols=19  Identities=47%  Similarity=0.737  Sum_probs=17.4

Q ss_pred             ecCcEEEEECCCCCCHHHH
Q 048308           11 SLGELLAILGPSGRGKTTL   29 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTL   29 (413)
                      +.|++.+..|.||+|||||
T Consensus        12 ~~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHH
T ss_pred             CCCCEEEEEccCCCCcccc
Confidence            4689999999999999997

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.43  E-value=0.19  Score=46.28  Aligned_cols=20  Identities=45%  Similarity=0.725  Sum_probs=18.3

Q ss_pred             ecCcEEEEECCCCCCHHHHH
Q 048308           11 SLGELLAILGPSGRGKTTLP   30 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl   30 (413)
                      +.|++.+..|-||+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            57899999999999999995

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.19  E-value=0.27  Score=39.56  Aligned_cols=23  Identities=39%  Similarity=0.367  Sum_probs=19.6

Q ss_pred             CcEEEEECCCCCCHHH-HHHHHhC
Q 048308           13 GELLAILGPSGRGKTT-LPTTLGG   35 (413)
Q Consensus        13 Ge~~~ilG~sGsGKST-Ll~~l~g   35 (413)
                      |.+..|+||=.||||| |++.+..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            7899999999999999 7776643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.71  E-value=0.18  Score=39.56  Aligned_cols=23  Identities=22%  Similarity=0.301  Sum_probs=18.2

Q ss_pred             ecCcEEEEECCCCCCHHHHHHHH
Q 048308           11 SLGELLAILGPSGRGKTTLPTTL   33 (413)
Q Consensus        11 ~~Ge~~~ilG~sGsGKSTLl~~l   33 (413)
                      +..+...|.+|.|||||+++-.+
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHH
Confidence            34577889999999999987443

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=83.57  E-value=0.25  Score=45.70  Aligned_cols=23  Identities=43%  Similarity=0.401  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      ++|=|+-||||||+++.|+..+.
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEECCcCCCHHHHHHHHHHHhC
Confidence            67889999999999999987654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.42  E-value=0.26  Score=42.63  Aligned_cols=20  Identities=35%  Similarity=0.428  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 048308           15 LLAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        15 ~~~ilG~sGsGKSTLl~~l~   34 (413)
                      -++++|.-++|||||+..|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            38999999999999999883

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=83.01  E-value=0.18  Score=44.92  Aligned_cols=19  Identities=26%  Similarity=0.141  Sum_probs=17.7

Q ss_pred             EecCcEEEEECCCCCCHHH
Q 048308           10 SSLGELLAILGPSGRGKTT   28 (413)
Q Consensus        10 ~~~Ge~~~ilG~sGsGKST   28 (413)
                      +++|+.+.|.+|+|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            5789999999999999996

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=82.73  E-value=0.33  Score=42.12  Aligned_cols=19  Identities=32%  Similarity=0.295  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 048308           16 LAILGPSGRGKTTLPTTLG   34 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~   34 (413)
                      ++++|.-.+|||||++.|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5999999999999999994

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.79  E-value=0.27  Score=45.70  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHH---hCCCC
Q 048308           16 LAILGPSGRGKTTLPTTL---GGRLS   38 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l---~g~~~   38 (413)
                      ++|+|.-|+|||||++.|   +|...
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            899999999999999999   45543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=81.40  E-value=0.3  Score=43.70  Aligned_cols=30  Identities=17%  Similarity=0.326  Sum_probs=25.0

Q ss_pred             eEEecCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308            8 GVSSLGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus         8 ~~~~~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      +..+.-..+.+.||.++||||++++|...+
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344555678899999999999999999876

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=81.02  E-value=0.4  Score=44.29  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Q 048308           16 LAILGPSGRGKTTLPTTLGGRLS   38 (413)
Q Consensus        16 ~~ilG~sGsGKSTLl~~l~g~~~   38 (413)
                      +.|=|+-|+||||+++.|+..+.
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEECCccCCHHHHHHHHHHHhc
Confidence            56779999999999999998764

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=0.46  Score=37.80  Aligned_cols=26  Identities=35%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Q 048308           12 LGELLAILGPSGRGKTTLPTTLGGRL   37 (413)
Q Consensus        12 ~Ge~~~ilG~sGsGKSTLl~~l~g~~   37 (413)
                      .|.+..|+||=.|||||-|--.+.++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            58999999999999999765554443